FFCP PHASE1:Hg19::chr6:106534192..106534224,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr6:106534192..106534224,+
|short_description=p1@PRDM1
|description=CAGE_peak_1_at_PRDM1_5end
|association_with_transcript=0bp_to_ENST00000369091,ENST000003690...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=639 | |EntrezGene=639 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9346 | |HGNC=9346 | ||
|TSSclassifier=strong | |||
|UniProt=O75626,Q5T4E8 | |UniProt=O75626,Q5T4E8 | ||
|association_with_transcript=0bp_to_ENST00000369091,ENST00000369096,NM_001198,uc003prd.2_5end | |||
|cluster_id=chr6:106534192..106534224,+ | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_1_at_PRDM1_5end | |||
|id=chr6:106534192..106534224,+ | |||
|ontology_enrichment_celltype=CL:0000738!3.68e-33!140;CL:0002087!2.17e-29!119;CL:0002009!1.78e-25!65;CL:0002057!6.70e-25!42;CL:0002194!2.99e-24!63;CL:0000576!2.99e-24!63;CL:0000040!2.99e-24!63;CL:0000559!2.99e-24!63;CL:0000860!3.52e-24!45;CL:0000766!4.24e-24!76;CL:0002031!4.62e-24!124;CL:0000557!2.78e-21!71;CL:0000037!2.09e-19!172;CL:0000566!2.09e-19!172;CL:0002032!2.62e-18!165;CL:0000837!2.62e-18!165;CL:0000839!2.93e-18!70;CL:0000988!6.24e-18!182;CL:0000763!2.30e-12!112;CL:0000049!2.30e-12!112 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.37e-21;33!CL:0002057;1.37e-21;33!CL:0000473;1.78e-18;39!CL:0000234;1.78e-18;39!CL:0000576;3.57e-17;48!CL:0000766;9.42e-12;69!CL:0002087;5.26e-10;104!CL:0000738;2.67e-08;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,6.63e-37,136;CL:0002087,3.34e-32,115;CL:0002009,3.53e-28,61;CL:0000473,3.16e-27,48;CL:0000234,3.16e-27,48;CL:0000766,4.78e-27,72;CL:0002031,5.60e-27,120;CL:0002194,7.44e-27,59;CL:0000576,7.44e-27,59;CL:0000040,7.44e-27,59;CL:0000559,7.44e-27,59;CL:0000860,2.40e-26,42;CL:0002057,2.40e-26,42;CL:0000557,5.60e-24,67;CL:0000037,4.04e-22,168;CL:0002032,7.73e-21,161;CL:0000837,7.73e-21,161;CL:0000839,8.94e-21,66;CL:0000988,1.27e-20,177;CL:0000763,3.37e-14,108;CL:0000049,3.37e-14,108;CL:0000542,9.40e-07,53;CL:0000051,9.40e-07,53 | |||
|ontology_enrichment_development_v019=CL:0002057;3.36e-19;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!5.05e-27!102;UBERON:0003061!5.05e-27!102;UBERON:0002193!1.22e-25!112;UBERON:0002371!3.89e-19!80;UBERON:0001474!1.51e-16!86;UBERON:0002405!3.51e-14!115;UBERON:0004765!5.70e-14!101;UBERON:0001434!5.70e-14!101;UBERON:0003081!1.40e-10!216;UBERON:0000178!6.91e-08!15;UBERON:0000179!6.91e-08!15;UBERON:0000463!6.91e-08!15;UBERON:0002204!7.41e-08!167 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.78e-08;15!UBERON:0000179;2.78e-08;15!UBERON:0000463;2.78e-08;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,6.10e-30,98;UBERON:0003061,6.10e-30,98;UBERON:0002193,3.15e-28,108;UBERON:0002371,1.85e-21,76;UBERON:0002405,2.49e-21,93;UBERON:0001474,1.57e-18,82;UBERON:0004765,2.81e-16,90;UBERON:0001434,1.99e-13,100;UBERON:0003081,1.54e-12,203;UBERON:0000178,2.80e-08,15;UBERON:0000179,2.80e-08,15;UBERON:0000463,2.80e-08,15 | |||
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| ||
|short_description=p1@PRDM1 | |||
}} | }} |
Latest revision as of 14:57, 19 September 2015
Short description: | p1@PRDM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PRDM1_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | 0bp_to_ENST00000369091, ENST00000369096, NM_001198, uc003prd.2_5end |
EntrezGene: | PRDM1 |
HGNC: | 9346 |
UniProt: | O75626Q5T4E8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 6.63e-37 | 136 |
nongranular leukocyte | 3.34e-32 | 115 |
macrophage dendritic cell progenitor | 3.53e-28 | 61 |
defensive cell | 3.16e-27 | 48 |
phagocyte | 3.16e-27 | 48 |
myeloid leukocyte | 4.78e-27 | 72 |
hematopoietic lineage restricted progenitor cell | 5.60e-27 | 120 |
monopoietic cell | 7.44e-27 | 59 |
monocyte | 7.44e-27 | 59 |
monoblast | 7.44e-27 | 59 |
promonocyte | 7.44e-27 | 59 |
classical monocyte | 2.40e-26 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.40e-26 | 42 |
granulocyte monocyte progenitor cell | 5.60e-24 | 67 |
hematopoietic stem cell | 4.04e-22 | 168 |
hematopoietic oligopotent progenitor cell | 7.73e-21 | 161 |
hematopoietic multipotent progenitor cell | 7.73e-21 | 161 |
myeloid lineage restricted progenitor cell | 8.94e-21 | 66 |
hematopoietic cell | 1.27e-20 | 177 |
myeloid cell | 3.37e-14 | 108 |
common myeloid progenitor | 3.37e-14 | 108 |
lymphocyte | 9.40e-07 | 53 |
common lymphoid progenitor | 9.40e-07 | 53 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 6.10e-30 | 98 |
blood island | 6.10e-30 | 98 |
hemolymphoid system | 3.15e-28 | 108 |
bone marrow | 1.85e-21 | 76 |
immune system | 2.49e-21 | 93 |
bone element | 1.57e-18 | 82 |
skeletal element | 2.81e-16 | 90 |
skeletal system | 1.99e-13 | 100 |
lateral plate mesoderm | 1.54e-12 | 203 |
blood | 2.80e-08 | 15 |
haemolymphatic fluid | 2.80e-08 | 15 |
organism substance | 2.80e-08 | 15 |