FFCP PHASE1:Hg19::chr6:160114266..160114282,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr6:160114266..160114282,-
|short_description=p1@SOD2
|description=CAGE_peak_1_at_SOD2_5end
|association_with_transcript=0bp_to_ENST00000367055,ENST00000444946...") |
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(13 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6648 | |EntrezGene=6648 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11180 | |HGNC=11180 | ||
|TSSclassifier=strong | |||
|UniProt=P04179,B4E3K9,G5E9P6,F5GXZ9 | |UniProt=P04179,B4E3K9,G5E9P6,F5GXZ9 | ||
|association_with_transcript=0bp_to_ENST00000367055,ENST00000444946,ENST00000452684,ENST00000546260_5end | |||
|cluster_id=chr6:160114266..160114282,- | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_1_at_SOD2_5end | |||
|id=chr6:160114266..160114282,- | |||
|ontology_enrichment_celltype=CL:0002057!4.64e-22!42;CL:0000766!2.61e-21!76;CL:0000860!3.40e-21!45;CL:0002194!3.39e-20!63;CL:0000576!3.39e-20!63;CL:0000040!3.39e-20!63;CL:0000559!3.39e-20!63;CL:0002009!3.87e-20!65;CL:0000557!3.31e-17!71;CL:0000839!1.62e-16!70;CL:0000048!6.89e-12!430;CL:0000723!6.77e-11!436;CL:0000034!5.51e-10!444;CL:0000680!2.24e-09!57;CL:0000056!2.24e-09!57;CL:0000355!2.24e-09!57;CL:0000187!2.21e-08!54;CL:0000359!6.63e-08!32;CL:0000763!8.92e-08!112;CL:0000049!8.92e-08!112;CL:0000192!1.19e-07!42;CL:0000514!1.19e-07!42;CL:0000222!3.75e-07!119;CL:0000393!7.59e-07!60;CL:0000211!7.59e-07!60 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.22e-18;33!CL:0002057;1.22e-18;33!CL:0000473;4.81e-18;39!CL:0000234;4.81e-18;39!CL:0000576;1.84e-12;48!CL:0000766;3.66e-10;69!CL:0000359;1.96e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,5.32e-25,48;CL:0000234,5.32e-25,48;CL:0000860,4.64e-22,42;CL:0002057,4.64e-22,42;CL:0000766,2.19e-21,72;CL:0002194,2.25e-20,59;CL:0000576,2.25e-20,59;CL:0000040,2.25e-20,59;CL:0000559,2.25e-20,59;CL:0002009,2.72e-20,61;CL:0000557,3.25e-17,67;CL:0000839,1.64e-16,66;CL:0000048,3.58e-12,427;CL:0000723,3.65e-11,433;CL:0000034,3.08e-10,441;CL:0000680,1.23e-09,58;CL:0000056,1.23e-09,58;CL:0000355,1.23e-09,58;CL:0000187,1.23e-08,55;CL:0000192,6.55e-08,43;CL:0000514,6.55e-08,43;CL:0000359,6.63e-08,32;CL:0000763,1.49e-07,108;CL:0000049,1.49e-07,108;CL:0000222,4.24e-07,121;CL:0000393,4.44e-07,61;CL:0000211,4.44e-07,61 | |||
|ontology_enrichment_development_v019=CL:0002057;2.72e-16;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002204!1.80e-22!167;UBERON:0000926!1.84e-19!448;UBERON:0004120!1.84e-19!448;UBERON:0006603!1.84e-19!448;UBERON:0002193!2.67e-19!112;UBERON:0003081!9.07e-18!216;UBERON:0002390!2.21e-17!102;UBERON:0003061!2.21e-17!102;UBERON:0002405!1.40e-16!115;UBERON:0002371!2.95e-15!80;UBERON:0001474!8.22e-13!86;UBERON:0004765!1.16e-11!101;UBERON:0001434!1.16e-11!101;UBERON:0002385!9.50e-10!63;UBERON:0001015!9.50e-10!63;UBERON:0000383!9.50e-10!63;UBERON:0001134!1.07e-09!61;UBERON:0002036!1.07e-09!61;UBERON:0003082!1.07e-09!61;UBERON:0000486!1.07e-09!82;UBERON:0004290!1.39e-09!70;UBERON:0000923!1.16e-08!604;UBERON:0005291!1.16e-08!604;UBERON:0006598!1.16e-08!604;UBERON:0002532!1.16e-08!604;UBERON:0002050!1.57e-08!605;UBERON:0005423!1.57e-08!605;UBERON:0000467!1.75e-08!625;UBERON:0000480!3.01e-08!626;UBERON:0001009!3.46e-08!113;UBERON:0000914!4.27e-08!83;UBERON:0002329!4.27e-08!83;UBERON:0003077!4.27e-08!83;UBERON:0003059!4.27e-08!83;UBERON:0007282!4.27e-08!83;UBERON:0009618!4.27e-08!83;UBERON:0007285!4.27e-08!83;UBERON:0004535!1.30e-07!110;UBERON:0005256!2.73e-07!143;UBERON:0000922!3.08e-07!612;UBERON:0000468!5.57e-07!659;UBERON:0007023!7.29e-07!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002204,2.93e-23,167;UBERON:0000926,2.28e-22,315;UBERON:0004120,2.28e-22,315;UBERON:0006603,2.28e-22,315;UBERON:0002193,3.79e-19,108;UBERON:0003081,1.08e-17,203;UBERON:0002390,3.08e-17,98;UBERON:0003061,3.08e-17,98;UBERON:0002405,1.36e-15,93;UBERON:0002371,3.64e-15,76;UBERON:0004765,1.30e-13,90;UBERON:0001474,1.18e-12,82;UBERON:0001434,4.36e-12,100;UBERON:0002385,5.23e-10,64;UBERON:0001015,5.23e-10,64;UBERON:0000383,5.23e-10,64;UBERON:0001134,5.88e-10,62;UBERON:0002036,5.88e-10,62;UBERON:0003082,5.88e-10,62;UBERON:0000486,6.10e-10,83;UBERON:0002329,7.78e-10,71;UBERON:0003059,7.78e-10,71;UBERON:0007282,7.78e-10,71;UBERON:0004290,7.78e-10,71;UBERON:0009618,7.78e-10,71;UBERON:0003077,1.70e-09,72;UBERON:0007285,1.70e-09,72;UBERON:0007524,3.67e-09,73;UBERON:0005423,1.60e-08,581;UBERON:0005256,1.91e-08,122;UBERON:0002050,4.21e-08,564;UBERON:0000923,4.61e-08,560;UBERON:0010316,4.61e-08,560;UBERON:0005291,4.61e-08,560;UBERON:0006598,4.61e-08,560;UBERON:0010317,4.61e-08,560;UBERON:0002532,4.61e-08,560;UBERON:0001009,5.65e-08,112;UBERON:0003104,6.32e-08,160;UBERON:0009142,6.32e-08,160;UBERON:0007503,1.14e-07,78;UBERON:0004535,2.09e-07,109;UBERON:0007023,7.77e-07,114;UBERON:0000922,9.81e-07,592 | |||
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| ||
|short_description=p1@SOD2 | |||
}} | }} |
Latest revision as of 14:47, 16 September 2015
Short description: | p1@SOD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SOD2_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | 0bp_to_ENST00000367055, ENST00000444946, ENST00000452684, ENST00000546260_5end |
EntrezGene: | SOD2 |
HGNC: | 11180 |
UniProt: | P04179B4E3K9G5E9P6F5GXZ9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 5.32e-25 | 48 |
phagocyte | 5.32e-25 | 48 |
classical monocyte | 4.64e-22 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.64e-22 | 42 |
myeloid leukocyte | 2.19e-21 | 72 |
monopoietic cell | 2.25e-20 | 59 |
monocyte | 2.25e-20 | 59 |
monoblast | 2.25e-20 | 59 |
promonocyte | 2.25e-20 | 59 |
macrophage dendritic cell progenitor | 2.72e-20 | 61 |
granulocyte monocyte progenitor cell | 3.25e-17 | 67 |
myeloid lineage restricted progenitor cell | 1.64e-16 | 66 |
multi fate stem cell | 3.58e-12 | 427 |
somatic stem cell | 3.65e-11 | 433 |
stem cell | 3.08e-10 | 441 |
muscle precursor cell | 1.23e-09 | 58 |
myoblast | 1.23e-09 | 58 |
multi-potent skeletal muscle stem cell | 1.23e-09 | 58 |
muscle cell | 1.23e-08 | 55 |
smooth muscle cell | 6.55e-08 | 43 |
smooth muscle myoblast | 6.55e-08 | 43 |
vascular associated smooth muscle cell | 6.63e-08 | 32 |
myeloid cell | 1.49e-07 | 108 |
common myeloid progenitor | 1.49e-07 | 108 |
mesodermal cell | 4.24e-07 | 121 |
electrically responsive cell | 4.44e-07 | 61 |
electrically active cell | 4.44e-07 | 61 |