FFCP PHASE1:Hg19::chr11:66824276..66824298,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=29984 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=670 | |||
|TSSclassifier=strong | |||
|UniProt=O00212 | |||
|association_with_transcript=0bp_to_ENST00000308831,NM_014578,uc001ojv.2_5end | |||
|cluster_id=chr11:66824276..66824298,+ | |||
|coexpression_cluster_id=C511 | |||
|description=CAGE_peak_2_at_RHOD_5end | |||
|id=chr11:66824276..66824298,+ | |||
|ontology_enrichment_celltype=CL:0000066!2.14e-35!254;CL:0000220!2.62e-18!246;CL:0002321!4.89e-18!248;CL:0002076!3.51e-13!43;CL:0000223!2.02e-11!59;CL:0000076!9.60e-10!62;CL:0000222!3.08e-08!119;CL:0002251!4.03e-07!21;CL:0000548!7.32e-07!679;CL:0000004!7.32e-07!679;CL:0000255!7.32e-07!679 | |||
|ontology_enrichment_celltype_v019=CL:0002076;4.92e-10;42!CL:0002251;5.46e-07;20!CL:0000349;5.47e-07;19!CL:0002368;6.13e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.73e-36,253;CL:0002321,2.46e-19,250;CL:0002076,1.57e-13,42;CL:0000223,1.88e-11,58;CL:0000076,9.40e-11,63;CL:0000222,1.10e-08,121;CL:0002251,4.70e-07,20;CL:0002368,6.00e-07,13;CL:0000349,7.83e-07,19 | |||
|ontology_enrichment_development_v019=CL:0000223;9.06e-07;58 | |||
|ontology_enrichment_disease=DOID:305!1.28e-08!106 | |||
|ontology_enrichment_disease_v019=DOID:299;8.48e-07;25 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.97e-08,106;DOID:299,5.73e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0003104!2.16e-16!238;UBERON:0009142!2.16e-16!238;UBERON:0002100!4.08e-16!216;UBERON:0004119!6.96e-16!169;UBERON:0000925!6.96e-16!169;UBERON:0006595!6.96e-16!169;UBERON:0000481!4.23e-15!347;UBERON:0000468!2.78e-13!659;UBERON:0005256!1.97e-12!143;UBERON:0000475!6.82e-12!365;UBERON:0001007!1.33e-11!155;UBERON:0001555!1.33e-11!155;UBERON:0007026!1.33e-11!155;UBERON:0000466!1.79e-11!126;UBERON:0000464!7.53e-11!104;UBERON:0009569!9.07e-11!113;UBERON:0001048!1.07e-10!168;UBERON:0000483!3.04e-10!309;UBERON:0000077!3.81e-10!130;UBERON:0000119!5.59e-10!312;UBERON:0001004!1.05e-09!72;UBERON:0000490!3.36e-09!138;UBERON:0000477!3.97e-09!286;UBERON:0000467!4.07e-09!625;UBERON:0000480!5.06e-09!626;UBERON:0000915!5.78e-09!52;UBERON:0003914!1.26e-08!118;UBERON:0000064!1.91e-08!219;UBERON:0004921!2.28e-08!129;UBERON:0004185!2.28e-08!129;UBERON:0001444!2.43e-08!48;UBERON:0002050!1.03e-07!605;UBERON:0005423!1.03e-07!605;UBERON:0000923!1.22e-07!604;UBERON:0005291!1.22e-07!604;UBERON:0006598!1.22e-07!604;UBERON:0002532!1.22e-07!604;UBERON:0000922!1.48e-07!612;UBERON:0005631!2.93e-07!14;UBERON:0000158!2.93e-07!14;UBERON:0001041!3.23e-07!98;UBERON:0000486!3.32e-07!82;UBERON:0000161!3.64e-07!35;UBERON:0003064!3.75e-07!37;UBERON:0004923!5.04e-07!57;UBERON:0003102!5.13e-07!95;UBERON:0000926!6.23e-07!448;UBERON:0004120!6.23e-07!448;UBERON:0006603!6.23e-07!448;UBERON:0000063!7.18e-07!97;UBERON:0004111!7.84e-07!241 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.40e-15,160;UBERON:0000925,1.40e-15,160;UBERON:0006595,1.40e-15,160;UBERON:0002100,1.44e-14,199;UBERON:0001007,1.94e-11,145;UBERON:0001555,1.94e-11,145;UBERON:0007026,1.94e-11,145;UBERON:0001048,1.33e-10,160;UBERON:0009569,1.40e-10,112;UBERON:0001004,6.43e-10,74;UBERON:0003104,7.62e-10,160;UBERON:0009142,7.62e-10,160;UBERON:0000033,3.03e-09,56;UBERON:0003914,9.08e-09,117;UBERON:0000915,1.00e-08,52;UBERON:0000490,1.42e-08,148;UBERON:0005256,1.45e-08,122;UBERON:0001444,1.78e-08,49;UBERON:0003102,2.68e-08,99;UBERON:0000483,3.04e-08,306;UBERON:0004923,3.13e-08,66;UBERON:0000119,6.70e-08,309;UBERON:0004921,6.71e-08,118;UBERON:0000161,1.15e-07,36;UBERON:0000153,1.40e-07,62;UBERON:0007811,1.40e-07,62;UBERON:0005631,1.81e-07,14;UBERON:0000158,1.81e-07,14;UBERON:0001041,5.51e-07,87;UBERON:0000486,6.77e-07,83;UBERON:0000165,8.51e-07,29;UBERON:0000930,8.51e-07,29 | |||
|phase1_expression=7.81217030863394,10.7050261945492,6.90676580070259,17.0124607200322,10.2801051718276,12.2127393374052,7.59899634504932,0.631719873426831,1.82829939739887,10.5665592695649,46.0548770861802,17.0384270261534,24.0027950187893,9.90130823680373,16.2384714106679,5.3786011716142,2.41077811209591,2.92124036154949,3.90346239032406,5.54044761345546,15.300051843319,10.3440058087769,3.43483184557268,3.14811177667634,1.75759695432724,0,0,0,0,0,0.77408061658038,44.1322187749885,56.0243008927545,51.0260534030167,0,0,0.293600439334847,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0,0.853460445133014,0,0,0.661044872784862,0.954053754535364,0,0,0.382273228125229,0,0,0,0.196709770113833,0.393010762749165,0,0.334372990781356,0,0,1.94826728407911,0.222820913770347,0,0.221533894583621,0.270803863765016,0.128091319725675,0,0.164437904603676,0.276350017785848,0,0.14828656316206,0,0,0,0,0.34362744548263,0.253019692019503,0,0,0,0.301150238155546,0.383959833463255,0,0,0,0.201606743224732,0,0,2.43806866313962,3.35350429851818,6.13740296848946,7.59022220007589,19.5521785147997,15.7882705667298,5.5670016293577,14.1124112387764,6.42836756715661,6.65188192387692,5.35792192728069,2.5540919722054,50.2727497843708,43.3817798057782,0,0,0.132957960518865,0,0,0,1.98762407366705,1.72046919021225,6.59566953054429,5.08777147731609,3.35599548967925,6.60283300656162,2.92592953151535,3.35941786920128,2.49036383880697,3.68192674041137,13.2933674646019,12.9246257972147,24.8943298699133,4.04429388380456,5.67099363517232,3.75058858793135,4.93964619777574,4.0540132973996,9.19899824795299,3.79706263827252,6.59526278149466,0,3.87780264148325,50.1508159963915,4.96971951695318,4.81195944325403,0.926864265692532,0,1.41867352879343,5.60677600142307,2.1349799145941,4.9333509683432,3.11211035399766,2.96363478553314,2.12500474047496,5.90293967815232,2.88087962239999,6.32667865951251,3.1216007683032,1.71141546463335,2.39117888882882,1.87895197830024,0.971237666208789,1.26405726032024,3.47062091133319,5.03620700978249,5.47626640231557,8.31602000097437,9.89067717114228,1.82032272387605,17.965453545406,2.18836948140286,2.87772595705518,2.77064115484183,3.95079858792754,4.90380473278431,12.0190447125277,1.47461838108027,0.717558542755448,5.55249210928275,3.17897851739343,1.50045548042201,3.60683852334536,2.57640540045629,8.93360910391631,1.5189869901714,4.38466523225394,2.01947019395292,9.02089006694534,6.14255015911485,1.77504796258307,3.42557133973977,3.56077243852024,27.8295628555147,19.3649745619493,16.9214711279512,1.70763188581434,1.06023814657188,1.51052125730374,1.34759371519982,2.27088765788066,1.82488679537915,1.56449532329816,7.07565032012174,6.90674606762403,8.35862270457562,12.271951188383,8.75470320294845,8.26064981382698,4.33819853790268,8.27204795492955,7.40790109914181,5.69449485866632,7.14605933248871,6.67152981426177,5.77120735419586,2.95262181849859,0,7.4083322039652,13.2307840246988,3.80265104465493,9.82827216677626,3.54473944008842,0,3.07471096357784,4.28919525746314,34.4615896183084,60.6969467591146,17.3915122272121,22.9619343993153,12.7065239071027,4.15973914111831,5.77325368101093,3.24605133930215,5.51820862908362,6.92958949253154,7.87075371380238,6.46864117597634,30.0277671224525,30.0470156733205,0,1.40402559083543,0.445893486866185,44.0549019737852,21.501712409454,16.7294614746016,23.9121255616605,26.4476884047705,48.3062175748166,0,0,0.414656231081544,0.432359860250884,0.12624243342638,0,1.90994212779139,0,6.84289784090821,0.308482478109971,0.600686115687835,1.14330573052231,1.45770409648969,0.87192013766656,1.10007428731425,8.66120495577111,21.4593867511129,0.845302752556,5.05282421511254,3.12022310734098,2.82928111688356,1.41849132023278,7.72624319146688,3.43147184779554,5.42621605391443,5.76268235746538,0.325736184293735,4.97548728239564,0.791951872933429,16.8806051153368,14.816068796205,18.6949493510447,0,0,0,5.03212196532324,8.04033550838797,4.27910715122155,2.60606352001643,4.72595541865882,1.79060963239896,0,0,0,0,0.254094624222463,0,0,0.670065061337395,0,0,0,0,9.81531933753119,15.0051156317903,14.377046256086,7.69492187663986,12.4900292158013,9.77754973210395,9.01988895443892,7.52365249319297,20.4666753650386,10.3473071292505,5.31380478828349,7.55913591020983,5.03924963914881,3.72022199179207,1.71571711905428,0.206768026122887,0,0,75.4787652901186,61.5811126188839,32.3557613862758,8.68377327365719,2.91577749247319,15.9976253826852,9.99485364194467,6.14048698880044,8.68611174175481,19.2943486378488,0.308419387605311,2.48586415438378,1.23190734020714,1.55776328755086,2.5566283261191,2.1754700926492,16.8425435054759,19.9815745990895,3.3296189967736,2.00300284807389,4.72047893853927,8.57279264524082,5.00599691178696,19.6087442294214,16.0753147118587,6.12199447578679,5.68666920354483,4.25234263191289,2.15915916102139,16.9649977959318,11.108803939298,21.0709705019038,11.7243085600718,21.6079762321468,11.4176124908311,0,0,3.84675187674584,6.23227826829441,10.0867302345934,6.4915837338065,0,0,38.4757910457435,30.5528315637165,12.8547143875328,6.96029171703278,3.38906957652218,3.07007349452259,0.275673144969061,3.33002759091648,6.0907011443976,2.30111894023472,4.71869788927708,20.3300445894003,27.09879949848,7.78437546216963,19.6246094859767,2.32422774648643,1.5740617341532,9.0614845120878,4.00443654228915,6.38767236380426,2.60979897622522,11.1194531462352,3.14874750832381,2.232950216158,6.64396791909324,4.19386426632415,11.0036050263874,2.1396949401696,3.18203247925937,1.56989728039846,4.67668389716618,4.39259247577688,5.06593330086452,5.66110948405285,33.2871674463317,14.7440459683643,13.6537446945085,7.06769119930725,8.45201174054043,4.7774968992795,5.65621727814851,13.5609739944291,6.06501877900737,13.2687795048244,7.0152141640602,12.7330617538671,7.21484227251296,5.0727594240676,5.88664646389525,7.04239006330604,3.58528380510129,9.23540985523339,3.92338156629375,1.41904425628239,12.6664581178598,14.4889752902357,4.17420491142287,16.0969971312692,23.3819733922994,56.9756934205419,49.0009431875952,6.59006605437454,18.5117310248629,18.5318623234388,22.6149378303705,12.4050636111758,0,0,1.13929437434833,0,0,0.648473311192717,0.540031437238115,0,0,0,20.5833781424067,0.371606350251437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425846237690326,0,0,0,0,0,0,0,0,0,0,6.54991891428769,1.02555725490326,32.4032593071201,0,0,38.6766065275058,23.7571744666111,40.2380519749994,0,0.844016498463076,2.44879151050393,0,10.7673958145277,5.37969568277888,0.828851746593443,0,0,0,6.84287092855976,15.8168298019295,6.08671993897071,0,3.25523238601881,2.3948309234694,13.3364388173564,0,0.371072392647405,0,24.2197817809267,15.7427999993152,1.44999915086959,12.1758989665485,10.1701460117107,14.6560362696121,1.03423011972439,0,3.47249989866585,0,0.844175070377856,1.52581736317083,0.663475559587348,1.47773809476774,0.219385397153973,2.28770773389879,14.0817981721389,4.69396576873162,0,11.7587591237911,5.83424688663519,6.30154757147647,24.8820904590897,8.15218581276575,16.5240780565777,0,0,0,0,0,0,0,0,9.91690903281727,8.48810602427568,3.67517985728246,1.94749775767882,1.99052386215701,3.09601475761687,1.83309043480088,0,0,0,0.202203398942031,4.81546588379273,0.468528891450678,0,12.9138648495179,6.5550702474205,5.12959723704208,4.83962864194656,0,3.79119477770928,0,0,0,0,0,0,7.9690672888342,0,19.9593699085401,19.6964718802899,15.2353611515704,2.97035336011451,6.53546923392143,7.45023750925956,7.6012889769633,8.12943024826771,9.69890164884194,0,1.35588444468319,0,0,0.126621591911757,8.01760669212692,7.69524674414724,5.76323085796252,8.79162282161373,12.6799567095613,0,0,8.78734267727713,0,36.7682694002201,3.12579673969312,5.02093662299199,0,0,0,0.273810757783986,0,3.43812353135966,0,4.74780082162832,5.27068975226872,2.15361907373044,20.1675790503981,14.5936856366434,12.274430159303,3.62790751428322,5.76479813667846,2.32991899054908,0.236349546921671,0.0824158583811665,0.13480708770837,4.72451911270794,0,0,1.0896272488926,2.25054407851027,1.65047323916681,2.07720169014593,0.2249738915515,6.1904156364636,0.425246896606173,9.72760594037872,5.12237097444788,3.09482069996489,0.633602019116439,3.22717210799121,25.7166364408057,7.14695326373367,4.63464379255802,0,11.402991636828,14.6917653504216,6.20515984207877,4.7892076624995,0,0.170388021785422,0,16.7069546393014,5.30027555648885,0.387848869084652,0.52893040697076,4.61934462287689,11.2770403570668,2.56289790162467,1.41483874589699,2.89967338743037,1.48849806543585,0.395223263795889,0.365377795142688,18.5118964753353,9.79232046065053,7.520696820681,5.51422038174231,3.93447156851765,2.35581144375351,0,0.244052529803926,0.1251909307065,1.72022758707021,1.44207766997908,0.372578417648301,0,0,0,0,0,0,0,1.34329322598187,3.27198633786114,2.21922344601045,9.47015026375446,13.0815308911339,4.44905610798268,3.66144109435078,3.17584939902802,3.88593001456951,2.06997209985487,3.50452887760145,4.04822800947244,4.50262574941152,5.80588690977198,5.3168342911599,5.21745061811734,13.9739576367413,11.4241563650639,2.84809513243263,2.90957854724095,9.02248679156903,5.10437135866343,4.77715066438339,0,6.86791410365586,10.4392341517435,0,5.7785949122191,9.00654683774688,0,6.80117776536817,7.17719670403885,0.244736704506468,0,17.2928810410144,9.42921413188441,4.94729608648467,8.87404576046208,4.56144589763296,0,0,4.86175929883811,0.691292180758654,1.94860308839388,1.86010776438708,0.490696182767533,2.6208787907713,0,24.0895820628835,0,0,0,0,3.68211900503681,36.3686720070556,17.4181632809232,0,0,0,0,4.07358071889661,3.40119872162693,1.36329340684902,5.02780426175919,9.22212616894914,0,0,7.75887076119505,3.6749457282384,0.128458450192919,0,0.159633859057151,0.205116364240755,0,0.345786262321089,0.322951291263702,1.42769420259154,14.5258623381518,0,14.1240020861693,21.6032995701132,7.62764190934334,0,6.76315155195334,4.28698871590766,0,11.7227101684964,7.33338744547983,2.94789451518174,12.2720551560148,0.270150338473579,0,0,0.0634158101939068,0,14.2547019382867,4.46590060550365,11.7833733720946,28.4910213636297,0.535701835878287,0,2.42786241694653,2.95960848756687,6.65267776219791,0.576169937778896,32.7542098025469,0.339848664884159,0.197318320688547,16.5471377237555,10.5669831797466,5.0235579424329,0.157115589916002,14.574152492317,0,0.215927591218621,2.8665101273223,4.07416301806941,0,0,0,10.4222477414933,17.4061577896951,28.8514226288775,14.5164528980959,7.31386509994472,6.62659204091166,5.87972492838188,3.81048345171836,8.2478472675858,5.89392132762208,8.5998504507969,6.48761504427195,17.4707415835132,2.31644057466312,1.29485767437579,2.77189578511867,6.95888658802919,3.39997695141398,0,0.596852325484105,3.80544290488219,1.1294608203896,0,1.66059127923341,3.31848879864162,4.15263164957519,0.470317296361523,1.71603825227734,1.64973582971138,0.392616934229891,0.297046400327086,1.6906229103336,8.32642861970303,0.751871343838829,0.386747327841463,0,8.03492723725459,15.5273743554904,5.45641293486344,4.3820183294791,6.88093925106811,0.143339583151451,9.30852216939789,0.339957450954573,0.436350690340377,4.2322147241232,9.67187047233553,18.4870251452567,11.2482906152185,1.64016352285603,0,2.02717601618299,1.93778776509765,0.534434810531121,1.47031839255752,1.0028301571695,2.34913964476542,1.87574891109325,0,0.20686599172379,7.67642334843531,4.52322419781107,0.322944549180031,0.806971285846153,8.63415341870723,8.97424931722125,5.65928129083014,10.8858373948481,3.42233301085281,5.25346013513783,6.09638745837749,3.99192427855216,9.52418242748402,0.533636729388577,5.7921684686082,17.2464388044647,7.03922827210363,2.81155321620593,4.47585796147312,1.99727032255654,1.61019034872821,1.28227396921293 | |||
|short_description=p2@RHOD | |||
}} |
Latest revision as of 16:39, 19 September 2015
Short description: | p2@RHOD |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_RHOD_5end |
Coexpression cluster: | C511_Placental_Alveolar_Bronchial_amniotic_Gingival_Corneal_Mammary |
Association with transcript: | 0bp_to_ENST00000308831, NM_014578, uc001ojv.2_5end |
EntrezGene: | RHOD |
HGNC: | 670 |
UniProt: | O00212 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.73e-36 | 253 |
embryonic cell | 2.46e-19 | 250 |
endo-epithelial cell | 1.57e-13 | 42 |
endodermal cell | 1.88e-11 | 58 |
squamous epithelial cell | 9.40e-11 | 63 |
mesodermal cell | 1.10e-08 | 121 |
epithelial cell of alimentary canal | 4.70e-07 | 20 |
respiratory epithelial cell | 6.00e-07 | 13 |
extraembryonic cell | 7.83e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 1.40e-15 | 160 |
endoderm | 1.40e-15 | 160 |
presumptive endoderm | 1.40e-15 | 160 |
trunk | 1.44e-14 | 199 |
digestive system | 1.94e-11 | 145 |
digestive tract | 1.94e-11 | 145 |
primitive gut | 1.94e-11 | 145 |
primordium | 1.33e-10 | 160 |
subdivision of trunk | 1.40e-10 | 112 |
respiratory system | 6.43e-10 | 74 |
mesenchyme | 7.62e-10 | 160 |
entire embryonic mesenchyme | 7.62e-10 | 160 |
head | 3.03e-09 | 56 |
epithelial tube | 9.08e-09 | 117 |
thoracic segment of trunk | 1.00e-08 | 52 |
unilaminar epithelium | 1.42e-08 | 148 |
trunk mesenchyme | 1.45e-08 | 122 |
subdivision of head | 1.78e-08 | 49 |
surface structure | 2.68e-08 | 99 |
epithelium | 3.04e-08 | 306 |
organ component layer | 3.13e-08 | 66 |
cell layer | 6.70e-08 | 309 |
subdivision of digestive tract | 6.71e-08 | 118 |
orifice | 1.15e-07 | 36 |
anterior region of body | 1.40e-07 | 62 |
craniocervical region | 1.40e-07 | 62 |
extraembryonic membrane | 1.81e-07 | 14 |
membranous layer | 1.81e-07 | 14 |
foregut | 5.51e-07 | 87 |
multilaminar epithelium | 6.77e-07 | 83 |
mouth | 8.51e-07 | 29 |
stomodeum | 8.51e-07 | 29 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.97e-08 | 106 |
adenocarcinoma | 5.73e-07 | 25 |