FFCP PHASE1:Hg19::chr8:146078860..146078917,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr8:146078860..146078917,-
|short_description=p3@COMMD5
|description=CAGE_peak_3_at_COMMD5_5end
|association_with_transcript=14bp_to_NM_001081003_5end
|Entrez...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=28991 | |EntrezGene=28991 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17902 | |HGNC=17902 | ||
|TSSclassifier=strong | |||
|UniProt=Q9GZQ3 | |UniProt=Q9GZQ3 | ||
|association_with_transcript=14bp_to_NM_001081003_5end | |||
|cluster_id=chr8:146078860..146078917,- | |||
|coexpression_cluster_id=C3670 | |||
|description=CAGE_peak_3_at_COMMD5_5end | |||
|id=chr8:146078860..146078917,- | |||
|ontology_enrichment_celltype=CL:0000766!6.16e-34!76;CL:0000557!4.78e-29!71;CL:0002009!1.04e-28!65;CL:0002194!1.68e-27!63;CL:0000576!1.68e-27!63;CL:0000040!1.68e-27!63;CL:0000559!1.68e-27!63;CL:0000839!2.02e-27!70;CL:0002057!3.32e-27!42;CL:0000860!5.13e-24!45;CL:0000763!4.27e-22!112;CL:0000049!4.27e-22!112;CL:0000738!1.94e-18!140;CL:0000048!1.94e-16!430;CL:0002320!1.74e-15!365;CL:0000723!3.53e-15!436;CL:0000134!3.71e-15!358;CL:0002031!5.57e-15!124;CL:0002087!5.31e-14!119;CL:0000037!8.17e-14!172;CL:0000566!8.17e-14!172;CL:0000034!1.36e-13!444;CL:0002032!2.98e-13!165;CL:0000837!2.98e-13!165;CL:0000988!6.25e-13!182;CL:0000219!1.87e-10!390;CL:0000115!1.46e-08!35;CL:0002371!3.94e-07!591;CL:0002139!4.31e-07!24 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.23e-20;33!CL:0002057;1.23e-20;33!CL:0000473;2.14e-20;39!CL:0000234;2.14e-20;39!CL:0000576;2.59e-18;48!CL:0000766;2.17e-16;69!CL:0000763;1.87e-08;100!CL:0000115;1.86e-07;36!CL:0002139;4.11e-07;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,2.70e-38,72;CL:0000557,2.60e-33,67;CL:0002009,5.49e-33,61;CL:0002194,9.80e-32,59;CL:0000576,9.80e-32,59;CL:0000040,9.80e-32,59;CL:0000559,9.80e-32,59;CL:0000473,3.32e-31,48;CL:0000234,3.32e-31,48;CL:0000839,3.46e-31,66;CL:0000860,1.53e-27,42;CL:0002057,1.53e-27,42;CL:0000763,6.80e-25,108;CL:0000049,6.80e-25,108;CL:0000738,4.95e-21,136;CL:0000048,1.99e-17,427;CL:0002031,3.49e-17,120;CL:0002087,3.02e-16,115;CL:0002320,3.08e-16,361;CL:0000723,3.69e-16,433;CL:0000037,5.72e-16,168;CL:0000134,6.65e-16,354;CL:0002032,2.67e-15,161;CL:0000837,2.67e-15,161;CL:0000034,1.21e-14,441;CL:0000988,1.78e-14,177;CL:0000219,2.92e-11,386;CL:0000115,9.51e-09,36;CL:0002139,3.64e-07,24 | |||
|ontology_enrichment_development_v019=CL:0002057;2.88e-20;42!CL:0000049;1.98e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!3.69e-27!112;UBERON:0003081!6.79e-27!216;UBERON:0002371!3.01e-26!80;UBERON:0002390!1.61e-24!102;UBERON:0003061!1.61e-24!102;UBERON:0001474!8.03e-23!86;UBERON:0002405!5.93e-22!115;UBERON:0004765!5.23e-21!101;UBERON:0001434!5.23e-21!101;UBERON:0002204!3.47e-19!167;UBERON:0002384!5.74e-14!375;UBERON:0000926!5.86e-09!448;UBERON:0004120!5.86e-09!448;UBERON:0006603!5.86e-09!448;UBERON:0001009!2.57e-07!113;UBERON:0004535!5.38e-07!110 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003081,1.44e-31,203;UBERON:0002405,1.28e-30,93;UBERON:0002193,3.36e-30,108;UBERON:0002371,3.61e-30,76;UBERON:0002390,1.64e-27,98;UBERON:0003061,1.64e-27,98;UBERON:0001474,4.24e-26,82;UBERON:0004765,5.90e-25,90;UBERON:0000926,7.01e-25,315;UBERON:0004120,7.01e-25,315;UBERON:0006603,7.01e-25,315;UBERON:0001434,4.63e-23,100;UBERON:0002204,9.97e-21,167;UBERON:0002384,8.27e-15,371;UBERON:0001009,2.11e-07,112;UBERON:0004535,4.46e-07,109;UBERON:0000055,9.38e-07,68 | |||
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| ||
|short_description=p3@COMMD5 | |||
}} | }} |
Latest revision as of 02:51, 17 September 2015
Short description: | p3@COMMD5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_COMMD5_5end |
Coexpression cluster: | C3670_CD14_Mesenchymal_Eosinophils_CD14CD16_Monocytederived_Neutrophils_Macrophage |
Association with transcript: | 14bp_to_NM_001081003_5end |
EntrezGene: | COMMD5 |
HGNC: | 17902 |
UniProt: | Q9GZQ3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 2.70e-38 | 72 |
granulocyte monocyte progenitor cell | 2.60e-33 | 67 |
macrophage dendritic cell progenitor | 5.49e-33 | 61 |
monopoietic cell | 9.80e-32 | 59 |
monocyte | 9.80e-32 | 59 |
monoblast | 9.80e-32 | 59 |
promonocyte | 9.80e-32 | 59 |
defensive cell | 3.32e-31 | 48 |
phagocyte | 3.32e-31 | 48 |
myeloid lineage restricted progenitor cell | 3.46e-31 | 66 |
classical monocyte | 1.53e-27 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.53e-27 | 42 |
myeloid cell | 6.80e-25 | 108 |
common myeloid progenitor | 6.80e-25 | 108 |
leukocyte | 4.95e-21 | 136 |
multi fate stem cell | 1.99e-17 | 427 |
hematopoietic lineage restricted progenitor cell | 3.49e-17 | 120 |
nongranular leukocyte | 3.02e-16 | 115 |
connective tissue cell | 3.08e-16 | 361 |
somatic stem cell | 3.69e-16 | 433 |
hematopoietic stem cell | 5.72e-16 | 168 |
mesenchymal cell | 6.65e-16 | 354 |
hematopoietic oligopotent progenitor cell | 2.67e-15 | 161 |
hematopoietic multipotent progenitor cell | 2.67e-15 | 161 |
stem cell | 1.21e-14 | 441 |
hematopoietic cell | 1.78e-14 | 177 |
motile cell | 2.92e-11 | 386 |
endothelial cell | 9.51e-09 | 36 |
endothelial cell of vascular tree | 3.64e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
lateral plate mesoderm | 1.44e-31 | 203 |
immune system | 1.28e-30 | 93 |
hemolymphoid system | 3.36e-30 | 108 |
bone marrow | 3.61e-30 | 76 |
hematopoietic system | 1.64e-27 | 98 |
blood island | 1.64e-27 | 98 |
bone element | 4.24e-26 | 82 |
skeletal element | 5.90e-25 | 90 |
mesoderm | 7.01e-25 | 315 |
mesoderm-derived structure | 7.01e-25 | 315 |
presumptive mesoderm | 7.01e-25 | 315 |
skeletal system | 4.63e-23 | 100 |
musculoskeletal system | 9.97e-21 | 167 |
connective tissue | 8.27e-15 | 371 |
circulatory system | 2.11e-07 | 112 |
cardiovascular system | 4.46e-07 | 109 |
vessel | 9.38e-07 | 68 |