FFCP PHASE1:Hg19::chr15:75074410..75074506,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1445 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2444 | |||
|TSSclassifier=strong | |||
|UniProt=P41240,A8K3B6,B2R6Q4 | |||
|association_with_transcript=0bp_to_ENST00000220003,ENST00000439220,NM_001127190,NM_004383,uc002ays.2,uc010bka.2,uc010bkb.1_5end | |||
|cluster_id=chr15:75074410..75074506,+ | |||
|description=CAGE_peak_1_at_CSK_5end | |||
|id=chr15:75074410..75074506,+ | |||
|ontology_enrichment_celltype=CL:0000988!5.76e-46!182;CL:0000037!4.79e-45!172;CL:0000566!4.79e-45!172;CL:0002032!1.03e-43!165;CL:0000837!1.03e-43!165;CL:0000738!2.58e-37!140;CL:0002087!8.71e-34!119;CL:0002031!1.81e-29!124;CL:0000763!4.49e-25!112;CL:0000049!4.49e-25!112;CL:0000766!2.26e-20!76;CL:0000542!6.14e-17!53;CL:0000051!6.14e-17!53;CL:0000838!1.63e-16!52;CL:0000557!2.13e-15!71;CL:0002194!3.76e-15!63;CL:0000576!3.76e-15!63;CL:0000040!3.76e-15!63;CL:0000559!3.76e-15!63;CL:0000839!2.24e-14!70;CL:0002009!5.84e-14!65;CL:0002057!7.10e-12!42;CL:0000860!2.00e-11!45;CL:0000945!9.94e-11!24;CL:0000826!9.94e-11!24;CL:0002371!9.76e-09!591;CL:0000134!1.75e-07!358;CL:0000219!1.96e-07!390;CL:0000003!2.82e-07!722;CL:0002320!3.53e-07!365 | |||
|ontology_enrichment_celltype_v019=CL:0000945;1.02e-10;24!CL:0000542;9.25e-10;53!CL:0002087;1.96e-09;104!CL:0000766;2.86e-09;69!CL:0000763;3.24e-09;100!CL:0000988;4.58e-09;177!CL:0000576;8.76e-09;48!CL:0000738;1.16e-08;136!CL:0000473;7.44e-08;39!CL:0000234;7.44e-08;39!CL:0000860;4.27e-07;33!CL:0002057;4.27e-07;33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,1.17e-46,177;CL:0000037,5.80e-46,168;CL:0002032,1.19e-44,161;CL:0000837,1.19e-44,161;CL:0000738,2.70e-38,136;CL:0002087,7.39e-35,115;CL:0002031,2.31e-30,120;CL:0000763,6.29e-26,108;CL:0000049,6.29e-26,108;CL:0000766,1.99e-21,72;CL:0000542,6.14e-17,53;CL:0000051,6.14e-17,53;CL:0000838,1.63e-16,52;CL:0000557,3.00e-16,67;CL:0002194,4.23e-16,59;CL:0000576,4.23e-16,59;CL:0000040,4.23e-16,59;CL:0000559,4.23e-16,59;CL:0000839,3.52e-15,66;CL:0002009,8.38e-15,61;CL:0000473,5.21e-14,48;CL:0000234,5.21e-14,48;CL:0000860,7.10e-12,42;CL:0002057,7.10e-12,42;CL:0000945,9.94e-11,24;CL:0000826,9.94e-11,24;CL:0000134,2.49e-07,354;CL:0000219,2.83e-07,386;CL:0002320,5.01e-07,361 | |||
|ontology_enrichment_development_v019=CL:0000051;9.25e-10;53!CL:0002057;8.05e-09;42!CL:0000049;1.57e-08;108 | |||
|ontology_enrichment_disease_v019=DOID:1240;3.59e-09;39!DOID:8692;5.32e-09;31!DOID:2531;5.61e-09;51!DOID:0060083;5.61e-09;51 | |||
|ontology_enrichment_disease_v019_2=DOID:2531,9.47e-15,51;DOID:0060083,9.47e-15,51;DOID:1240,1.16e-11,39;DOID:8692,2.52e-09,31 | |||
|ontology_enrichment_uberon=UBERON:0002193!2.73e-24!112;UBERON:0002390!3.58e-23!102;UBERON:0003061!3.58e-23!102;UBERON:0002405!1.32e-16!115;UBERON:0002371!1.42e-14!80;UBERON:0001474!1.71e-13!86;UBERON:0003081!1.11e-12!216;UBERON:0004765!1.66e-09!101;UBERON:0001434!1.66e-09!101;UBERON:0000178!2.89e-07!15;UBERON:0000179!2.89e-07!15;UBERON:0000463!2.89e-07!15;UBERON:0002384!3.65e-07!375 | |||
|ontology_enrichment_uberon_v019=UBERON:0002390;9.94e-08;32!UBERON:0000178;2.88e-07;15!UBERON:0000179;2.88e-07;15!UBERON:0000463;2.88e-07;15!UBERON:0002193;5.40e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,4.07e-25,108;UBERON:0002390,4.78e-24,98;UBERON:0003061,4.78e-24,98;UBERON:0002405,3.41e-19,93;UBERON:0002371,2.78e-15,76;UBERON:0001474,4.23e-14,82;UBERON:0003081,6.93e-12,203;UBERON:0004765,2.51e-11,90;UBERON:0001434,2.75e-09,100;UBERON:0000178,2.89e-07,15;UBERON:0000179,2.89e-07,15;UBERON:0000463,2.89e-07,15;UBERON:0002384,5.19e-07,371 | |||
|phase1_expression=29.0685406832891,38.9662953481589,31.8556953256895,37.0271203906583,26.8176656656373,24.4254786748103,58.2589719787114,53.6961892412806,57.1996525757646,79.6177954264889,204.455742215921,47.1833363801172,57.5012012538029,26.60976588641,36.1223139543428,45.7181099587207,46.4074786578462,41.6276751520803,38.54669110445,80.6442930402961,103.836351843325,81.8116823057809,34.0620824685957,50.2329140017485,37.7883345180356,276.998595836323,288.09096837986,269.663136780665,159.705896400655,107.47223146722,177.883725690171,113.088810610908,162.952402059033,90.2199784806962,126.968741751114,113.451047524962,76.0425137877254,153.45672816333,163.042635793225,171.872609606955,74.3399374476549,92.9574821474471,103.287802621309,171.133727043548,129.98932462895,171.506931259786,160.840893538734,114.304672870068,97.2478004610625,104.720030805263,92.2178543504762,61.2488975411436,85.841674503418,63.257498991215,54.1705946377367,153.793991406308,104.523055472155,62.2484051912884,118.454466347539,102.69728866435,97.1792431214543,140.186802579354,112.696966556222,115.933132144893,97.2200949405756,108.370577916008,80.3440701204292,97.4844821196164,72.486125660408,67.5457307032913,93.2315234055388,71.8141390175751,44.6211966291647,177.454440502031,214.730342964694,142.358220300187,135.805315056113,129.452481629378,167.797512511752,161.317212957547,202.497177388674,185.404116071103,114.39755889986,138.719207260581,112.967675240671,96.0143000774641,146.544931255181,109.202963591352,122.293301465199,108.762128017032,135.472686648049,107.464405654882,116.593334578195,38.3296852879175,28.5859367120583,63.7389485155686,101.305531608624,88.8204323813112,105.473568986748,153.477202768642,64.2066865268173,51.1323630193512,116.896037044747,163.550550707435,79.543595018206,88.8350917280321,107.238330050946,255.029817573819,230.855341918784,186.96589753438,169.955260938297,141.423905838706,96.5345526185013,71.4334010999534,93.0366161864293,166.67804310812,80.0930831628015,76.2852928971438,98.4246601955866,107.037979212897,87.2451828167601,79.8379717336634,109.317536450463,111.348351704344,113.686961162635,105.839431663676,97.7142316336045,86.2876861001855,79.6971783434852,101.232258314076,90.2085405361658,34.8764447045891,38.6144936767462,47.3485289623782,41.6110465827788,37.804941448775,34.9925816702484,53.0432008629873,47.1728737648699,46.5631734671384,49.0996452024575,44.2709275182269,134.060666091656,88.9882662682631,113.591587779139,128.33361638956,149.045873741648,65.1079404353584,57.7714859887929,52.0040501861391,70.5606546151803,83.4427557252941,128.44198559481,78.5778039274373,105.294358488686,125.728945166611,101.780548703427,42.8971820221086,39.4900551582248,55.8983423316999,95.873377471977,58.5409521403255,162.545330327081,81.253540756437,112.609730755565,51.7045426764822,68.4814586509818,85.0216677649083,137.984973719295,114.861144807744,78.9599516340055,208.21305954898,232.668158488995,121.234146495625,42.2426158941021,39.2554586160197,34.9560237346898,37.5755973180946,68.4509977642829,54.9464048139461,69.3868472243082,81.4002909776628,46.0592332391654,42.7032830460911,40.7020138752512,50.2506659781172,35.7229073177599,117.395037348732,56.1888138294577,70.7385058715117,48.869718540439,66.1156227364396,62.806702414835,63.9051170495231,40.8308342509787,60.1888154827663,59.2056726137136,39.2040942903078,58.602262239018,186.583079197295,159.533227483205,38.7173062094352,80.0758527180571,63.4476824458779,64.968687890364,40.1499012496716,60.5459377393585,45.9400341798085,34.0840307808838,35.2369691550636,49.3801329701779,35.4107493379595,41.324064224614,31.947426965658,43.7374612379236,36.6244640963548,37.3183729767391,29.0298840380732,41.3304044903924,32.0059192501248,37.6310168067611,36.7745158530887,43.2379510391743,59.910864480622,61.3678771329378,79.7316775181431,36.1042170143602,34.4577397635862,35.4391525752031,44.0559483815324,40.6236569909762,25.1834377762323,53.1928409921374,63.6808528810956,85.6436512385379,35.2919625304304,32.4845766751314,29.9316204100805,32.8740145652298,26.99323534695,35.0734833289013,35.7322288311546,28.7097449124427,29.1235625625955,30.610548559554,28.0865424570865,91.5312763734564,179.509470468411,77.7874881416346,107.316359311446,58.3073160180422,92.3857583676969,59.6697805748218,74.6072638010759,35.5436587389598,45.4654697291093,86.3734746165883,114.649788322772,64.0369554262088,65.6452076173975,100.67476634089,129.991848159947,59.175850230362,59.5882281571895,61.7569731680422,90.3733962984322,79.633508163177,76.6724233505431,123.271886081647,114.178659558618,123.847154061961,94.7717273813913,159.778499460383,46.8669169933885,44.0113175881012,55.5758381190155,48.8093948730523,58.9986895183343,79.3602145871987,40.8910487453633,233.504447003075,120.457635129189,107.225245342219,143.032677072088,77.2769373535697,179.916548437949,182.859217647673,164.229548181797,92.4419159402878,77.7888519815746,108.328217966989,95.7599460309381,74.9851318393242,72.0181966761729,32.3179289394444,1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| |||
|short_description=p1@CSK | |||
}} |
Latest revision as of 01:49, 19 September 2015
Short description: | p1@CSK |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CSK_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000220003, ENST00000439220, NM_001127190, NM_004383, uc002ays.2, uc010bka.2, uc010bkb.1_5end |
EntrezGene: | CSK |
HGNC: | 2444 |
UniProt: | P41240A8K3B6B2R6Q4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 1.17e-46 | 177 |
hematopoietic stem cell | 5.80e-46 | 168 |
hematopoietic oligopotent progenitor cell | 1.19e-44 | 161 |
hematopoietic multipotent progenitor cell | 1.19e-44 | 161 |
leukocyte | 2.70e-38 | 136 |
nongranular leukocyte | 7.39e-35 | 115 |
hematopoietic lineage restricted progenitor cell | 2.31e-30 | 120 |
myeloid cell | 6.29e-26 | 108 |
common myeloid progenitor | 6.29e-26 | 108 |
myeloid leukocyte | 1.99e-21 | 72 |
lymphocyte | 6.14e-17 | 53 |
common lymphoid progenitor | 6.14e-17 | 53 |
lymphoid lineage restricted progenitor cell | 1.63e-16 | 52 |
granulocyte monocyte progenitor cell | 3.00e-16 | 67 |
monopoietic cell | 4.23e-16 | 59 |
monocyte | 4.23e-16 | 59 |
monoblast | 4.23e-16 | 59 |
promonocyte | 4.23e-16 | 59 |
myeloid lineage restricted progenitor cell | 3.52e-15 | 66 |
macrophage dendritic cell progenitor | 8.38e-15 | 61 |
defensive cell | 5.21e-14 | 48 |
phagocyte | 5.21e-14 | 48 |
classical monocyte | 7.10e-12 | 42 |
CD14-positive, CD16-negative classical monocyte | 7.10e-12 | 42 |
lymphocyte of B lineage | 9.94e-11 | 24 |
pro-B cell | 9.94e-11 | 24 |
mesenchymal cell | 2.49e-07 | 354 |
motile cell | 2.83e-07 | 386 |
connective tissue cell | 5.01e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 4.07e-25 | 108 |
hematopoietic system | 4.78e-24 | 98 |
blood island | 4.78e-24 | 98 |
immune system | 3.41e-19 | 93 |
bone marrow | 2.78e-15 | 76 |
bone element | 4.23e-14 | 82 |
lateral plate mesoderm | 6.93e-12 | 203 |
skeletal element | 2.51e-11 | 90 |
skeletal system | 2.75e-09 | 100 |
blood | 2.89e-07 | 15 |
haemolymphatic fluid | 2.89e-07 | 15 |
organism substance | 2.89e-07 | 15 |
connective tissue | 5.19e-07 | 371 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 9.47e-15 | 51 |
immune system cancer | 9.47e-15 | 51 |
leukemia | 1.16e-11 | 39 |
myeloid leukemia | 2.52e-09 | 31 |