FFCP PHASE1:Hg19::chr19:36001122..36001196,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=93099 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25063 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_uc002nzj.2_5end | |||
|cluster_id=chr19:36001122..36001196,- | |||
|coexpression_cluster_id=C2484 | |||
|description=CAGE_peak_6_at_DMKN_5end | |||
|id=chr19:36001122..36001196,- | |||
|ontology_enrichment_celltype=CL:0000066!1.15e-35!254;CL:0002076!2.32e-15!43;CL:0000223!1.92e-10!59;CL:0002368!1.31e-08!13;CL:0002251!8.53e-07!21;CL:0002077!9.35e-07!33 | |||
|ontology_enrichment_celltype_v019=CL:0002076;5.56e-17;42!CL:0002368;2.90e-12;13!CL:0002251;3.12e-10;20!CL:0002202;1.95e-08;9!CL:0002632;1.95e-08;9!CL:0002159;9.87e-08;14!CL:1000507;6.84e-07;10!CL:1000494;6.84e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.19e-50,253;CL:0002076,1.85e-22,42;CL:0000223,1.50e-16,58;CL:0002368,2.74e-12,13;CL:0002251,2.84e-10,20;CL:0002202,1.88e-08,9;CL:0002632,1.88e-08,9;CL:0002159,1.01e-07,14;CL:0000076,1.39e-07,63;CL:1000507,7.76e-07,10;CL:1000494,7.76e-07,10 | |||
|ontology_enrichment_development_v019=CL:0000223;2.28e-09;58!UBERON:0008947;3.18e-07;29 | |||
|ontology_enrichment_disease=DOID:305!4.82e-20!106;DOID:0050687!5.47e-16!143;DOID:1749!1.45e-08!14;DOID:162!2.63e-08!235;DOID:14566!1.17e-07!239;DOID:193!8.40e-07!29 | |||
|ontology_enrichment_disease_v019=DOID:1749;7.01e-12;14!DOID:305;4.57e-09;106!DOID:299;2.08e-07;25 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.16e-28,106;DOID:0050687,1.30e-21,143;DOID:1749,8.95e-12,14;DOID:162,1.37e-11,235;DOID:14566,7.98e-11,239;DOID:299,1.60e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.51e-19!169;UBERON:0000925!1.51e-19!169;UBERON:0006595!1.51e-19!169;UBERON:0001007!1.27e-14!155;UBERON:0001555!1.27e-14!155;UBERON:0007026!1.27e-14!155;UBERON:0001004!2.20e-14!72;UBERON:0000464!4.07e-14!104;UBERON:0004921!1.18e-13!129;UBERON:0004185!1.18e-13!129;UBERON:0000466!1.54e-12!126;UBERON:0000065!2.00e-12!53;UBERON:0000077!3.24e-12!130;UBERON:0000064!1.22e-11!219;UBERON:0008947!3.93e-11!38;UBERON:0003258!3.93e-11!38;UBERON:0000481!9.89e-11!347;UBERON:0001041!2.27e-10!98;UBERON:0001048!4.65e-10!168;UBERON:0000072!8.38e-10!46;UBERON:0000062!8.40e-10!511;UBERON:0005157!5.68e-09!51;UBERON:0006554!7.85e-09!44;UBERON:0000063!8.38e-09!97;UBERON:0005177!1.29e-08!107;UBERON:0005153!1.65e-08!37;UBERON:0001008!2.48e-08!45;UBERON:0009569!3.12e-08!113;UBERON:0005911!4.48e-08!82;UBERON:0002553!7.22e-08!70;UBERON:0003104!7.41e-08!238;UBERON:0009142!7.41e-08!238;UBERON:0003100!8.00e-08!41;UBERON:0005181!1.03e-07!35;UBERON:0005178!1.46e-07!34;UBERON:0002224!1.46e-07!34;UBERON:0005156!2.42e-07!59;UBERON:0000990!2.42e-07!59;UBERON:0003886!7.30e-07!63;UBERON:0003103!9.23e-07!69 | |||
|ontology_enrichment_uberon_v019=UBERON:0000065;5.74e-10;44!UBERON:0000072;1.55e-09;37!UBERON:0006554;2.84e-09;30!UBERON:0001008;2.84e-09;30!UBERON:0005911;4.60e-09;36!UBERON:0004807;3.68e-08;22!UBERON:0001004;6.50e-08;65!UBERON:0001737;6.73e-08;9!UBERON:0001557;6.73e-08;9!UBERON:0004211;6.84e-07;10!UBERON:0009773;6.84e-07;10!UBERON:0001231;6.84e-07;10!UBERON:0004810;6.84e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.33e-19,160;UBERON:0000925,1.33e-19,160;UBERON:0006595,1.33e-19,160;UBERON:0001004,7.77e-15,74;UBERON:0001007,3.88e-14,145;UBERON:0001555,3.88e-14,145;UBERON:0007026,3.88e-14,145;UBERON:0004921,5.81e-13,118;UBERON:0000065,1.25e-12,54;UBERON:0001041,2.46e-12,87;UBERON:0008947,1.36e-11,38;UBERON:0003258,1.36e-11,38;UBERON:0006554,1.10e-10,47;UBERON:0000072,2.40e-10,47;UBERON:0001008,2.88e-10,48;UBERON:0005911,4.19e-09,82;UBERON:0005177,5.81e-09,101;UBERON:0005153,3.71e-08,37;UBERON:0001737,8.11e-08,9;UBERON:0009569,1.78e-07,112;UBERON:0005157,2.52e-07,47;UBERON:0001048,5.49e-07,160;UBERON:0004810,7.76e-07,10 | |||
|phase1_expression=0.181678379270557,0.214100523890983,0.422863212287913,1.0007329835313,0.446961094427288,0,0,0,0,16.9556416186041,62.1043039495461,3.49506195408276,5.01157258634062,0,0.331397375727916,0.672325146451775,0,0,0,0.123121058076788,0,0.313454721478088,0,0,0,1.52826811495903,1.80621296789881,2.20390187678302,0,0,0.309632246632152,12.871897142705,16.867531451582,10.7228662948368,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320929027076094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276350017785848,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0.236777252044017,0,0.201606743224732,0,0.144824403882799,0,1.34140171940727,0.12786256184353,0.361439152384566,0,0.434539556882471,0,0,0.189069634328136,1.33037638477538,0.702678285545008,0.327447688744282,12.750335090239,17.4268688108682,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.0076680335588,0.496971951695318,0,0.132409180813219,0,0.709336764396714,0.560677600142307,0,0.24666754841716,1.24484414159907,0,0,0,0,0,0,0,0.597794722207204,0.117434498643765,0,0,0,0,0.103325781175765,0,0,0,0.718618141816238,0,0,0,0.438977620880838,0,0.150238058906597,0.226864366320042,0,0,0,0,0.309157587715317,0,0,0.168776332241266,0.487185025805993,0,0.552299391853796,0,0,0.302256294682921,0,15.2676073999004,12.2735754265876,17.4950803187292,4.02513230227665,4.90360142789496,2.5562667431294,2.798848485415,5.2987378683882,5.47466038613745,0,0,0,0.464367928031979,0,4.37735160147422,4.04603256187444,2.6511213287183,5.29411069115491,4.35758888184812,4.27087114399974,6.20224017536756,6.47530834913642,4.61696588335668,0,0,2.4694440679884,0,0,0,0.590789906681404,0,3.93563003337963,0.686271241194102,19.4258005173267,11.240175325762,7.64020190328394,3.70353780634118,0,0,0,0.34779121492523,0.352226082707465,0,0,0,6.3216351836742,7.72637545885385,0,0,0,40.3055486143141,16.6302306916871,21.1244894891156,11.1052568151532,11.6253575405585,19.1691339582606,0.492663237895943,0,0,0,0,0.126995788584338,1.52795370223311,0,1.71072446022705,0.719792448923265,2.70308752059526,0.571652865261156,0,0.43596006883328,0,0.129271715757778,3.57656445851882,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,6.33022691825131,4.35766729300147,8.79762322402102,0,0,0,0.718874566474748,0,0,0.434343920002738,1.2328579353023,1.25342674267927,0,0.197030760201927,0.215627574859517,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0.271265023699736,0,0.178428988797162,0.157702415033935,0,0,0,0,0.664225598535437,0.368738337083406,0,0.195801157462741,0,0,0,0,1.81876542867756,4.99306318531491,1.20956117331872,0.744323423456331,0.153461973288062,1.40330047216537,0.768834895534206,1.53512174720011,0,0,0,0,0,0,0,3.98836183652353,13.4339335103201,8.56353197103836,0,0,0.131124414959424,10.3775910968705,3.54270550680308,3.13739907670742,2.92278449306521,2.11103257785751,0,0,0.863663664408557,1.54227252690289,0.541892875087706,4.51520796469368,6.11703055308092,8.31076008928724,6.71624264166535,0,0,1.28225062558195,1.31205858279882,1.62689197332152,0.721287081534056,0,0,14.9309039879005,21.4519881192052,0,0,0.462145851343933,0.15350367472613,0,0.322260734604821,0.145016693914229,0.340906509664404,0,16.8590613668198,16.1439656586689,5.6149593497617,10.5204092089772,0,0,0,0,1.59691809095107,0,0,0.143124886741991,0,0,0.38126038784765,0.255897791311334,0,0.318203247925937,0,1.2591072030832,0.274537029736055,0.589062011728432,0.808729926293264,0,0,0.48763373908959,0,0,0.136499911407986,0.141405431953713,0,0,0,0,0,0.655894752046633,0,0,0,0,0,0,0.354761064070598,0,0.987884678879706,0,0,9.91087761072774,16.7575568883947,13.0669181833587,0.282431402330337,13.3456665528081,16.8471475667626,6.65145230305014,4.13502120372527,0,0,0,0,0,0,0,0,5.34120355637366,0,4.90080431962063,0,0,0,0.159426272728822,0,0,0.211673582723883,0,0,0,0,0,8.80317244568337,0,0,0,0,0,0,0,0,0,0,0,0,0,1.8714054040822,0,3.27673408723686,0,0,0.71623345421307,0,0.921482106297696,0,0.140669416410513,0,0,1.05562704063997,0.597743964753209,0.552567831062295,1.76352923497993,3.98847861758404,1.47701766553283,0,7.27933644293347,6.98182581234876,0,0.394573622547734,0,0,0,0.463840490809256,0,1.30213880542617,1.13697999995054,0,15.248322070257,11.4414142631745,8.27356886187777,0,0,0,0,0.361789315876224,0,0.221158519862449,0,0.658156191461918,1.52513848926586,6.13464474825854,1.38510465306835,0,3.4584585658209,1.16684937732704,4.67183699264635,0,0.0915975934018623,1.06606955203727,0,0,0,0,0,0,0,0,3.79796516150449,1.95879369790977,11.7323049290171,0,0.995261931078505,0.442287822516696,0.611030144933625,0,0,0,0.471807930864739,0.802577647298789,0.234264445725339,0,4.50028623543806,0,1.18375320854817,0,0,0.884612114798832,5.56196651833622,1.55532287095871,0,0.330991955875499,1.88359751044335,2.38944859545918,6.26141001265544,0.138674673013139,3.64475450503775,5.97753624227704,6.35532208036939,0.698906672968121,0.859930162358083,5.51511088347785,4.97007356186062,7.1440447636292,2.81268147816416,1.76512253383001,0.225980740780532,2.74083849293502,0.19871461170299,0.759729551470544,4.49768180290047,0.160317640503067,0.213452994739353,9.19124204077799,10.3745100350956,6.98673236612086,2.4023299700675,5.18597272757339,0.869767748958028,11.7847017308398,0.67952103036807,0.418411385249333,0,0,0,0.136905378891993,0,0.859530882839914,0,0.558564802544508,0.458320848023367,1.43574604915363,3.59422200898184,0.858452096273142,0.223171457441873,0.604651252380536,0,0,2.12714592229504,1.81314888438566,2.2243169471881,0,11.1768798326836,0,0.136203406111576,5.30485389934563,3.57602535152808,7.89336642255452,0,0.77380195455795,0.546746009922222,3.01891218839339,1.49730843868477,0.944182586429966,3.69601177817923,0,2.68681276247223,0.714695326373367,1.32418394073086,2.79695391420225,0.542999601753713,0,0,0,0.164185041498678,0.340776043570843,0.339936274560377,0.146552233678082,1.32506888912221,0.258565912723101,0.66116300871345,3.25064991980226,0.704815022316672,1.49502377594773,0.943225830597996,0.414239055347196,0,0,0.730755590285376,7.021753835472,0,0,0.306345576763462,0,0,0.886068179966986,0.976210119215705,0.625954653532499,1.14681839138014,0.554645257684261,0.372578417648301,0,0,0.606596470166591,0.285465333544967,0,0,0,0,0,0,0.757612021100357,0,0,0.228840068396924,1.05861646634267,0,0.147855149989634,0.63718706865481,0.449803112163605,0.931577741257556,0.414706207840855,0.265841714557995,0.521745061811734,7.06210762286927,6.85449381903832,3.66183659884195,0,3.22231671127465,0.928067519756987,0.796191777397232,0,0,0,0,0,6.6476893326227,0.260994291965212,0.453411851024545,0.231522474323834,7.09736443068756,0.179088841081487,6.79363183754139,4.16639694199544,1.94358060540469,5.78742114812744,0.168942440653073,0,0,0,0.553033744606923,0,0,0,1.31043939538565,14.2548287077157,12.8900395248762,0,0.213383459388282,0,0,0,4.19638523158333,6.8428498603627,0,0,0,0,0,0,0,0,0,0,0.80057074828547,0,0,0.321146125482298,0,0.319267718114302,0.82046545696302,0,0.899044282034833,0.161475645631851,0,6.28145398406564,3.65706142377995,7.8874297364322,6.00733463981759,0,0.690359926060101,0,1.50420656698514,2.0170506870352,4.68908406739856,0,0.163771917510097,3.252833896775,0.87798860003913,0,1.03343398250592,0.697573912132975,0,2.19303106742873,0,0.175871244359621,2.8107734080711,0,0,0.606965604236632,0.91064876540519,0.0887023701626388,0.576169937778896,0,0,0.591954962065642,10.8738333613251,3.22571065487001,0.627944742804112,0.785577949580009,3.64353812307926,1.82631744101899,0,0,3.00201485541957,0,11.8566253875488,0,0,1.24329698497822,0.85359238546975,2.76503864725637,1.72090943528111,0,0,5.08064460229115,3.2074961596167,0.31020638566432,0,0.223710863595585,0,3.77945567445035,0,0,0,0.485710993059139,9.35757853848422,1.19370465096821,0.118920090777569,0.11294608203896,0,2.2644426535001,0.463044948647668,0.874238242015829,0,0.245148321753905,0.707029641304878,0.196308467114945,0,0.4226557275834,0,0.0939839179798536,0,0.199882311849858,2.32120120187355,8.4694769211766,6.5797920685118,1.46067277649303,1.37618785021362,0,0.157771562193185,0.679914901909147,0,1.5870805215462,0,0,0,1.00933139868063,1.85751472338282,1.52038201213724,1.73381010561369,0.26721740526556,1.01084389488329,1.50424523575425,0.151557396436479,0,0.829169439458779,0.724030971033267,2.55880778281177,1.1903221573187,0.129177819672012,0.0620747142958579,2.24263725161227,1.65482611523229,3.23387502333151,3.04803447055746,1.36893320434112,2.62673006756891,1.79305513481691,0.332660356546013,5.45401899693529,5.97673136915207,0,0.0898252021065869,2.34640942403454,0.733448665097199,1.22068853494722,0,0,5.12909587685173 | |||
|short_description=p6@DMKN | |||
}} |
Latest revision as of 12:18, 17 September 2015
Short description: | p6@DMKN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_DMKN_5end |
Coexpression cluster: | C2484_Alveolar_Mallassezderived_Urothelial_epidermoid_Esophageal_Corneal_endometrial |
Association with transcript: | 0bp_to_uc002nzj.2_5end |
EntrezGene: | DMKN |
HGNC: | 25063 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.19e-50 | 253 |
endo-epithelial cell | 1.85e-22 | 42 |
endodermal cell | 1.50e-16 | 58 |
respiratory epithelial cell | 2.74e-12 | 13 |
epithelial cell of alimentary canal | 2.84e-10 | 20 |
epithelial cell of tracheobronchial tree | 1.88e-08 | 9 |
epithelial cell of lower respiratory tract | 1.88e-08 | 9 |
general ecto-epithelial cell | 1.01e-07 | 14 |
squamous epithelial cell | 1.39e-07 | 63 |
kidney tubule cell | 7.76e-07 | 10 |
nephron tubule epithelial cell | 7.76e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 1.33e-19 | 160 |
endoderm | 1.33e-19 | 160 |
presumptive endoderm | 1.33e-19 | 160 |
respiratory system | 7.77e-15 | 74 |
digestive system | 3.88e-14 | 145 |
digestive tract | 3.88e-14 | 145 |
primitive gut | 3.88e-14 | 145 |
subdivision of digestive tract | 5.81e-13 | 118 |
respiratory tract | 1.25e-12 | 54 |
foregut | 2.46e-12 | 87 |
respiratory primordium | 1.36e-11 | 38 |
endoderm of foregut | 1.36e-11 | 38 |
urinary system structure | 1.10e-10 | 47 |
segment of respiratory tract | 2.40e-10 | 47 |
renal system | 2.88e-10 | 48 |
endo-epithelium | 4.19e-09 | 82 |
trunk region element | 5.81e-09 | 101 |
epithelial bud | 3.71e-08 | 37 |
larynx | 8.11e-08 | 9 |
subdivision of trunk | 1.78e-07 | 112 |
epithelial fold | 2.52e-07 | 47 |
primordium | 5.49e-07 | 160 |
nephron tubule epithelium | 7.76e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.16e-28 | 106 |
cell type cancer | 1.30e-21 | 143 |
squamous cell carcinoma | 8.95e-12 | 14 |
cancer | 1.37e-11 | 235 |
disease of cellular proliferation | 7.98e-11 | 239 |
adenocarcinoma | 1.60e-07 | 25 |