FFCP PHASE1:Hg19::chrX:80065319..80065351,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chrX:80065319..80065351,-
|short_description=p3@BRWD3
|description=CAGE_peak_3_at_BRWD3_5end
|association_with_transcript=-86bp_to_NM_153252,uc004edt.2,uc004edu...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=254065 | |EntrezGene=254065 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17342 | |HGNC=17342 | ||
|TSSclassifier=strong | |||
|UniProt=Q6RI45 | |UniProt=Q6RI45 | ||
|association_with_transcript=-86bp_to_NM_153252,uc004edt.2,uc004edu.2,uc004edv.2,uc004edw.2,uc004edx.2,uc004edy.2,uc004edz.2,uc004eea.2,uc004eeb.2_5end | |||
|cluster_id=chrX:80065319..80065351,- | |||
|description=CAGE_peak_3_at_BRWD3_5end | |||
|id=chrX:80065319..80065351,- | |||
|ontology_enrichment_celltype=CL:0000738!1.05e-22!140;CL:0002087!7.07e-19!119;CL:0002031!8.74e-19!124;CL:0000037!1.42e-18!172;CL:0000566!1.42e-18!172;CL:0002032!6.85e-17!165;CL:0000837!6.85e-17!165;CL:0000988!5.15e-16!182;CL:0000766!9.27e-13!76;CL:0000557!2.70e-11!71;CL:0000860!3.17e-11!45;CL:0000839!1.30e-10!70;CL:0002057!2.43e-10!42;CL:0002009!6.62e-10!65;CL:0002194!1.06e-09!63;CL:0000576!1.06e-09!63;CL:0000040!1.06e-09!63;CL:0000559!1.06e-09!63;CL:0000763!6.90e-09!112;CL:0000049!6.90e-09!112;CL:0000542!9.47e-09!53;CL:0000051!9.47e-09!53;CL:0000838!1.76e-08!52 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.78e-10;33!CL:0002057;3.78e-10;33!CL:0000576;3.45e-08;48!CL:0002087;7.09e-08;104!CL:0000473;2.86e-07;39!CL:0000234;2.86e-07;39!CL:0000766;4.73e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,7.37e-24,136;CL:0002087,2.13e-19,115;CL:0002031,1.13e-18,120;CL:0000037,4.78e-18,168;CL:0002032,4.77e-16,161;CL:0000837,4.77e-16,161;CL:0000988,5.77e-16,177;CL:0000766,1.78e-12,72;CL:0000860,4.89e-12,42;CL:0002057,4.89e-12,42;CL:0000473,8.63e-11,48;CL:0000234,8.63e-11,48;CL:0000557,1.06e-10,67;CL:0000542,7.57e-10,53;CL:0000051,7.57e-10,53;CL:0000839,1.33e-09,66;CL:0000838,1.67e-09,52;CL:0002009,3.95e-09,61;CL:0002194,5.92e-09,59;CL:0000576,5.92e-09,59;CL:0000040,5.92e-09,59;CL:0000559,5.92e-09,59;CL:0000763,1.77e-07,108;CL:0000049,1.77e-07,108 | |||
|ontology_enrichment_development_v019=CL:0002057;4.01e-09;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.86e-14!115;UBERON:0002390!8.29e-13!102;UBERON:0003061!8.29e-13!102;UBERON:0002193!1.49e-11!112;UBERON:0002371!5.82e-09!80;UBERON:0001474!9.86e-09!86;UBERON:0001049!5.10e-07!57;UBERON:0005068!5.10e-07!57;UBERON:0006241!5.10e-07!57;UBERON:0007135!5.10e-07!57;UBERON:0003080!5.34e-07!42 | |||
|ontology_enrichment_uberon_v019=UBERON:0000922;1.85e-07;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.73e-12,98;UBERON:0003061,1.73e-12,98;UBERON:0002193,1.11e-10,108;UBERON:0007023,3.38e-09,114;UBERON:0002371,3.44e-08,76;UBERON:0002405,3.41e-07,93;UBERON:0001474,4.43e-07,82 | |||
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| ||
|short_description=p3@BRWD3 | |||
}} | }} |
Latest revision as of 12:31, 16 September 2015
Short description: | p3@BRWD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_BRWD3_5end |
Coexpression cluster: | NA |
Association with transcript: | -86bp_to_NM_153252, uc004edt.2, uc004edu.2, uc004edv.2, uc004edw.2, uc004edx.2, uc004edy.2, uc004edz.2, uc004eea.2, uc004eeb.2_5end |
EntrezGene: | BRWD3 |
HGNC: | 17342 |
UniProt: | Q6RI45 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 7.37e-24 | 136 |
nongranular leukocyte | 2.13e-19 | 115 |
hematopoietic lineage restricted progenitor cell | 1.13e-18 | 120 |
hematopoietic stem cell | 4.78e-18 | 168 |
hematopoietic oligopotent progenitor cell | 4.77e-16 | 161 |
hematopoietic multipotent progenitor cell | 4.77e-16 | 161 |
hematopoietic cell | 5.77e-16 | 177 |
myeloid leukocyte | 1.78e-12 | 72 |
classical monocyte | 4.89e-12 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.89e-12 | 42 |
defensive cell | 8.63e-11 | 48 |
phagocyte | 8.63e-11 | 48 |
granulocyte monocyte progenitor cell | 1.06e-10 | 67 |
lymphocyte | 7.57e-10 | 53 |
common lymphoid progenitor | 7.57e-10 | 53 |
myeloid lineage restricted progenitor cell | 1.33e-09 | 66 |
lymphoid lineage restricted progenitor cell | 1.67e-09 | 52 |
macrophage dendritic cell progenitor | 3.95e-09 | 61 |
monopoietic cell | 5.92e-09 | 59 |
monocyte | 5.92e-09 | 59 |
monoblast | 5.92e-09 | 59 |
promonocyte | 5.92e-09 | 59 |
myeloid cell | 1.77e-07 | 108 |
common myeloid progenitor | 1.77e-07 | 108 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.73e-12 | 98 |
blood island | 1.73e-12 | 98 |
hemolymphoid system | 1.11e-10 | 108 |
adult organism | 3.38e-09 | 114 |
bone marrow | 3.44e-08 | 76 |
immune system | 3.41e-07 | 93 |
bone element | 4.43e-07 | 82 |