FFCP PHASE1:Hg19::chr7:93690316..93690375,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-77bp_to_ENST00000438538_5end | |||
|cluster_id=chr7:93690316..93690375,+ | |||
|coexpression_cluster_id=C2908 | |||
|description=CAGE_peak_1_at_ENST00000438538_5end | |||
|id=chr7:93690316..93690375,+ | |||
|ontology_enrichment_celltype=CL:0000723!1.12e-23!436;CL:0000048!1.55e-23!430;CL:0000034!2.44e-22!444;CL:0000680!1.86e-20!57;CL:0000056!1.86e-20!57;CL:0000355!1.86e-20!57;CL:0000187!6.21e-19!54;CL:0000055!1.00e-18!180;CL:0002057!3.91e-18!42;CL:0000183!4.01e-18!59;CL:0000860!3.80e-16!45;CL:0000192!1.08e-15!42;CL:0000514!1.08e-15!42;CL:0000393!1.13e-15!60;CL:0000211!1.13e-15!60;CL:0002371!2.20e-15!591;CL:0000144!3.61e-15!625;CL:0000359!8.50e-15!32;CL:0000548!5.24e-14!679;CL:0000004!5.24e-14!679;CL:0000255!5.24e-14!679;CL:0000012!1.11e-13!682;CL:0002009!1.02e-10!65;CL:0002194!1.02e-10!63;CL:0000576!1.02e-10!63;CL:0000040!1.02e-10!63;CL:0000559!1.02e-10!63;CL:0002620!4.44e-10!23;CL:0000134!4.86e-10!358;CL:0000003!1.29e-09!722;CL:0002320!2.94e-09!365;CL:0000219!4.85e-09!390;CL:0000557!6.55e-09!71;CL:0000839!1.33e-08!70;CL:0000766!1.23e-07!76 | |||
|ontology_enrichment_celltype_v019=CL:0000860;6.02e-27;33!CL:0002057;6.02e-27;33!CL:0000473;7.63e-18;39!CL:0000234;7.63e-18;39!CL:0000576;1.41e-11;48!CL:0000359;1.73e-07;32!CL:0000766;9.78e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.07e-21,42;CL:0002057,1.07e-21,42;CL:0000473,4.69e-18,48;CL:0000234,4.69e-18,48;CL:0002194,1.74e-14,59;CL:0000576,1.74e-14,59;CL:0000040,1.74e-14,59;CL:0000559,1.74e-14,59;CL:0002009,8.83e-14,61;CL:0000723,2.86e-13,433;CL:0000048,3.42e-13,427;CL:0000034,1.25e-12,441;CL:0000839,3.26e-12,66;CL:0000557,6.28e-12,67;CL:0000766,1.24e-10,72;CL:0000187,1.28e-08,55;CL:0000680,6.48e-08,58;CL:0000056,6.48e-08,58;CL:0000355,6.48e-08,58;CL:0000192,1.09e-07,43;CL:0000514,1.09e-07,43;CL:0000359,1.45e-07,32;CL:0000134,2.19e-07,354;CL:0000393,2.76e-07,61;CL:0000211,2.76e-07,61;CL:0002320,5.98e-07,361 | |||
|ontology_enrichment_development_v019=CL:0002057;1.84e-16;42 | |||
|ontology_enrichment_disease=DOID:2394!1.14e-14!14;DOID:120!2.13e-08!27;DOID:193!1.93e-07!29 | |||
|ontology_enrichment_disease_v019=DOID:2394;3.64e-22;14!DOID:120;3.94e-13;27!DOID:193;6.10e-12;29!DOID:0060072;1.50e-08;4 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,4.57e-22,14;DOID:120,4.05e-13,27;DOID:193,6.26e-12,29;DOID:0060072,1.44e-08,4 | |||
|ontology_enrichment_uberon=UBERON:0002204!5.56e-23!167;UBERON:0004290!5.43e-20!70;UBERON:0001134!3.83e-18!61;UBERON:0002036!3.83e-18!61;UBERON:0003082!3.83e-18!61;UBERON:0000914!1.35e-17!83;UBERON:0002329!1.35e-17!83;UBERON:0003077!1.35e-17!83;UBERON:0003059!1.35e-17!83;UBERON:0007282!1.35e-17!83;UBERON:0009618!1.35e-17!83;UBERON:0007285!1.35e-17!83;UBERON:0002385!4.17e-17!63;UBERON:0001015!4.17e-17!63;UBERON:0000383!4.17e-17!63;UBERON:0000486!3.37e-16!82;UBERON:0005256!3.55e-10!143;UBERON:0000926!7.94e-10!448;UBERON:0004120!7.94e-10!448;UBERON:0006603!7.94e-10!448;UBERON:0002384!2.50e-09!375;UBERON:0003081!3.73e-09!216;UBERON:0001637!7.56e-09!42;UBERON:0003509!7.56e-09!42;UBERON:0004572!7.56e-09!42;UBERON:0002371!1.38e-08!80;UBERON:0004573!5.39e-08!33;UBERON:0004571!5.39e-08!33;UBERON:0001474!5.60e-08!86;UBERON:0000992!9.64e-08!13;UBERON:0004765!2.01e-07!101;UBERON:0001434!2.01e-07!101;UBERON:0002199!9.54e-07!45;UBERON:0002416!9.54e-07!45 | |||
|ontology_enrichment_uberon_v019=UBERON:0000992;1.26e-11;13!UBERON:0003134;1.59e-10;33!UBERON:0002118;4.63e-10;5!UBERON:0002119;2.05e-09;4!UBERON:0000474;1.78e-07;37!UBERON:0003100;5.21e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002204,1.10e-13,167;UBERON:0000926,4.18e-13,315;UBERON:0004120,4.18e-13,315;UBERON:0006603,4.18e-13,315;UBERON:0002371,1.38e-11,76;UBERON:0000992,1.43e-11,13;UBERON:0001474,2.66e-11,82;UBERON:0002118,5.31e-10,5;UBERON:0003134,8.90e-10,37;UBERON:0000474,8.90e-10,37;UBERON:0004765,1.23e-09,90;UBERON:0002119,2.17e-09,4;UBERON:0002405,6.35e-09,93;UBERON:0003100,2.03e-08,41;UBERON:0002390,4.13e-08,98;UBERON:0003061,4.13e-08,98;UBERON:0001434,5.80e-08,100;UBERON:0003081,2.66e-07,203;UBERON:0001134,4.32e-07,62;UBERON:0002036,4.32e-07,62;UBERON:0003082,4.32e-07,62;UBERON:0002329,4.46e-07,71;UBERON:0003059,4.46e-07,71;UBERON:0007282,4.46e-07,71;UBERON:0004290,4.46e-07,71;UBERON:0009618,4.46e-07,71;UBERON:0003077,6.61e-07,72;UBERON:0007285,6.61e-07,72;UBERON:0002384,8.92e-07,371;UBERON:0007524,9.67e-07,73;UBERON:0002193,9.81e-07,108 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,2.52687949370732,0,0.982935746006035,0,0,0,0,0,2.01697543935533,1.80808358407193,0,0.487932798790507,0,0,0,0.286235987131057,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0.401088894940283,0.217010870715852,0,0,0,0.872389432677388,0.755751887377619,0,6.97287110717054,4.11167888021826,3.71647645074124,11.2200033005639,2.81776777182011,4.49316236788312,16.8925383560943,9.68227025375739,1.35426486594342,4.51781614902251,3.27487380069415,4.26974620445661,13.7737751566906,10.5906578935111,6.39337125799041,0.989553900560148,0.598390972864896,0.426224750532694,9.57690487474327,11.3477044938228,5.60540024096017,10.80369260604,6.77927793946262,4.12658804939722,4.23779651843358,16.940771255428,4.74693581161327,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0,0.361439152384566,0,0,1.5905718941022,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,1.32409180813219,0,0.709336764396714,0,0,0.24666754841716,0,0,0.163461903113459,0,0,0,0.936480230490962,1.71141546463335,2.69007624993242,0.352303495931295,0.809364721840658,0.280901613404497,0,0.122834317311768,0,0,0,0.910161361938026,0,0,0,0.277064115484183,0,0,0.45071417671979,0,0.717558542755448,0.427114777637135,1.27159140695737,0,0.103052529238439,0.515281080091258,0.18611685633159,0.506328996723799,0.0974370051611986,1.00973509697646,0.276149695926898,0,0.710019185033229,0.302256294682921,0.508681776931463,0.193260853163297,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,1.1240175325762,0,0.0925884451585296,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0.93733833986777,0,0.141775097242386,0.179117045405697,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1466765716419,0,0,1.690605505112,0.531876233169741,0,0.257207374262142,0,0,0,0,0,2.28015329005615,0,1.58390374586686,0.602878754119172,1.74306691720059,1.19967589418468,0,0,0,0,0,2.85273810081437,0.434343920002738,0.61642896765115,0.358121926479791,1.34502172792233,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0.173767228936166,0,0,0,0,0,0,0,0,0,0,0.280660094433074,0.384417447767103,0,0.160853921143607,0,3.08419387605311,3.01854933032316,1.97105174433142,7.2695620085707,1.97557643381931,0,0,0,0.114814448164607,0.728364672026868,0,0,3.54270550680308,2.35304930753057,0,6.43864936246542,0,0,0.215915916102139,0,0.270946437543853,0.501689773854853,0.509752546090077,0,0.447749509444357,0,0,0,0,0,0,0,0,0,0,0,1.25671933779759,0.770243085573222,0.15350367472613,1.65403886981437,0.107420244868274,0.290033387828457,2.64202544989913,0,0.165284915360978,0,0.510450849978337,0,0.464845549297286,0.62962469366128,2.0911118104818,0,2.12922412126809,4.34966496037536,2.59453906745488,0.572499546967965,0,0.316379424718726,0.190630193923825,0.255897791311334,0,0.636406495851874,2.35484592059769,0.899362287916574,1.92175920815238,2.00281083987667,2.62837226045311,0,5.89761838734574,0,6.82397770967596,1.05650146756755,0.136499911407986,0,2.26016233240486,1.65409603063837,0.66343897524122,0.438450885253763,0,0,0.608731130888112,0.92947049429925,0.281695602532241,0.143411352204052,0,1.07001315444375,6.38569915327076,0.211107635297664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425846237690326,0,0,0,0,0,0.278406173895242,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.66963057534359,3.95529298144223,0,0,0,0,0.20453736500431,0.369254416383208,0.622079175323615,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0.652931232636591,0,0,0,0,0,0,0,0,0,0,0,0.547364367646998,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,43.1210707395488,0,0,3.20635281006135,0,0,0,0,0,0,10.6857180586272,0,0.271808412147228,0.104602846312333,0,1.15580235960608,0,0,0,0,0,0,0,0,0,0,0,0,2.16179930125442,0,0,0,0,0,0,0,0,0,0,0,0.2249738915515,0,0,0,0,0.0524545881349981,0.633602019116439,19.1837453086144,0,0,0,0,3.25799761052228,3.45688596480507,5.87857248196936,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.974340787047167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.94031243752936,3.27198633786114,9.43169964554443,2.08343305802598,1.25783950876288,0,0.915360273587694,0.302461847526478,2.95330681107283,5.47064054961645,10.0356963313133,21.590549383853,7.29735897318419,17.8323669371568,11.1653520114358,3.1304703708704,2.25386413495828,2.66563648518157,8.13741466409323,3.27327586564607,8.16320233522912,10.6727764772054,1.19428766609585,0,0.343395705182793,0,0,0,0,0.260994291965212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265729680626726,0.327130788511688,1.63804924423206,6.88164144510414,0,0,0,0,0,7.18013205982179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.381382095467167,11.7361187430217,0,0,2.21875575573872,0,0,0.327543835020193,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115233987555779,0.685952037749674,0,0,0,0,0,0,0,0,10.3645243784938,2.8665101273223,0,0,0.348724276104376,0,0,0,0,0,0,7.45491604602562,7.58399302356503,0,0,1.86123831398592,5.7332336338646,0.335566295393377,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169927114687817,0,0,0.0999411559249289,0,72.6963435734325,0,0,0,0,0,0,0,0,0,0.462175628631418,0.865253124247578,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0645889098360061,0,0.784923038064294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p1@ENST00000438538 | |||
}} |
Latest revision as of 12:40, 31 July 2015
Short description: | p1@ENST00000438538 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ENST00000438538_5end |
Coexpression cluster: | C2908_squamous_fibrous_large_mesenchymal_giant_Renal_serous |
Association with transcript: | -77bp_to_ENST00000438538_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.07e-21 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.07e-21 | 42 |
defensive cell | 4.69e-18 | 48 |
phagocyte | 4.69e-18 | 48 |
monopoietic cell | 1.74e-14 | 59 |
monocyte | 1.74e-14 | 59 |
monoblast | 1.74e-14 | 59 |
promonocyte | 1.74e-14 | 59 |
macrophage dendritic cell progenitor | 8.83e-14 | 61 |
somatic stem cell | 2.86e-13 | 433 |
multi fate stem cell | 3.42e-13 | 427 |
stem cell | 1.25e-12 | 441 |
myeloid lineage restricted progenitor cell | 3.26e-12 | 66 |
granulocyte monocyte progenitor cell | 6.28e-12 | 67 |
myeloid leukocyte | 1.24e-10 | 72 |
muscle cell | 1.28e-08 | 55 |
muscle precursor cell | 6.48e-08 | 58 |
myoblast | 6.48e-08 | 58 |
multi-potent skeletal muscle stem cell | 6.48e-08 | 58 |
smooth muscle cell | 1.09e-07 | 43 |
smooth muscle myoblast | 1.09e-07 | 43 |
vascular associated smooth muscle cell | 1.45e-07 | 32 |
mesenchymal cell | 2.19e-07 | 354 |
electrically responsive cell | 2.76e-07 | 61 |
electrically active cell | 2.76e-07 | 61 |
connective tissue cell | 5.98e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system | 1.10e-13 | 167 |
mesoderm | 4.18e-13 | 315 |
mesoderm-derived structure | 4.18e-13 | 315 |
presumptive mesoderm | 4.18e-13 | 315 |
bone marrow | 1.38e-11 | 76 |
female gonad | 1.43e-11 | 13 |
bone element | 2.66e-11 | 82 |
right ovary | 5.31e-10 | 5 |
female reproductive organ | 8.90e-10 | 37 |
female reproductive system | 8.90e-10 | 37 |
skeletal element | 1.23e-09 | 90 |
left ovary | 2.17e-09 | 4 |
immune system | 6.35e-09 | 93 |
female organism | 2.03e-08 | 41 |
hematopoietic system | 4.13e-08 | 98 |
blood island | 4.13e-08 | 98 |
skeletal system | 5.80e-08 | 100 |
lateral plate mesoderm | 2.66e-07 | 203 |
skeletal muscle tissue | 4.32e-07 | 62 |
striated muscle tissue | 4.32e-07 | 62 |
myotome | 4.32e-07 | 62 |
somite | 4.46e-07 | 71 |
presomitic mesoderm | 4.46e-07 | 71 |
presumptive segmental plate | 4.46e-07 | 71 |
dermomyotome | 4.46e-07 | 71 |
trunk paraxial mesoderm | 4.46e-07 | 71 |
paraxial mesoderm | 6.61e-07 | 72 |
presumptive paraxial mesoderm | 6.61e-07 | 72 |
connective tissue | 8.92e-07 | 371 |
dense mesenchyme tissue | 9.67e-07 | 73 |
hemolymphoid system | 9.81e-07 | 108 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 4.57e-22 | 14 |
female reproductive organ cancer | 4.05e-13 | 27 |
reproductive organ cancer | 6.26e-12 | 29 |
benign neoplasm | 1.44e-08 | 4 |