FFCP PHASE1:Mm9::chr9:40183944..40184000,-: Difference between revisions
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{{FFCP|EntrezGene=235283|HGNC=|MCL_coexpression_id=694|UniProt=|association_with_transcript=0bp_to_ENSMUST00000149492_5end|description=CAGE_peak_4_at_Gramd1b_5end|id=chr9:40183944..40184000,-|ontology_enrichment_celltype=CL:0000117!1.25e-09!23;CL:0000337!1.25e-09!23;CL:0000221!9.01e-07!44;CL:0000133!9.01e-07!44|ontology_enrichment_celltype_v019_2=CL:0000117,3.70e-07,23;CL:0000337,3.70e-07,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!1.34e-26!63;UBERON:0002346!2.49e-22!71;UBERON:0003075!2.49e-22!71;UBERON:0007284!2.49e-22!71;UBERON:0004121!3.24e-22!102;UBERON:0000924!3.24e-22!102;UBERON:0006601!3.24e-22!102;UBERON:0001049!1.78e-21!52;UBERON:0005068!1.78e-21!52;UBERON:0006241!1.78e-21!52;UBERON:0007135!1.78e-21!52;UBERON:0000955!6.23e-21!50;UBERON:0006238!6.23e-21!50;UBERON:0000073!8.94e-21!75;UBERON:0001016!8.94e-21!75;UBERON:0001017!1.32e-20!73;UBERON:0005743!1.32e-20!73;UBERON:0002616!3.23e-20!49;UBERON:0003056!3.44e-20!49;UBERON:0002020!1.37e-17!34;UBERON:0007811!4.77e-17!86;UBERON:0003080!4.88e-15!40;UBERON:0002791!1.08e-14!29;UBERON:0003528!1.08e-14!29;UBERON:0001893!1.08e-14!29;UBERON:0002780!2.37e-14!39;UBERON:0001890!2.37e-14!39;UBERON:0006240!2.37e-14!39;UBERON:0000153!1.47e-13!94;UBERON:0002619!8.69e-11!17;UBERON:0000956!1.49e-10!21;UBERON:0001869!1.49e-10!21;UBERON:0000203!1.49e-10!21;UBERON:0002021!5.38e-09!10;UBERON:0000411!5.38e-09!10;UBERON:0001950!5.38e-09!10;UBERON:0003076!3.06e-07!12;UBERON:0003057!3.06e-07!12;UBERON:0000489!7.65e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0002346,2.33e-33,64;UBERON:0003075,2.33e-33,64;UBERON:0007284,2.33e-33,64;UBERON:0000073,1.86e-31,54;UBERON:0004121,1.04e-28,95;UBERON:0000924,1.04e-28,95;UBERON:0006601,1.04e-28,95;UBERON:0001049,2.84e-28,52;UBERON:0005068,2.84e-28,52;UBERON:0006241,2.84e-28,52;UBERON:0007135,2.84e-28,52;UBERON:0001017,5.91e-28,73;UBERON:0010371,7.38e-28,73;UBERON:0001016,6.56e-27,75;UBERON:0000955,6.33e-23,47;UBERON:0006238,6.33e-23,47;UBERON:0003056,7.40e-23,49;UBERON:0002616,1.01e-21,46;UBERON:0002020,1.67e-21,34;UBERON:0010314,8.42e-20,92;UBERON:0002619,1.97e-16,17;UBERON:0002021,2.13e-16,10;UBERON:0000411,2.13e-16,10;UBERON:0001950,2.13e-16,10;UBERON:0003080,2.20e-16,40;UBERON:0003528,2.81e-16,29;UBERON:0002791,2.81e-16,29;UBERON:0001893,2.81e-16,29;UBERON:0002780,2.97e-15,39;UBERON:0001890,2.97e-15,39;UBERON:0006240,2.97e-15,39;UBERON:0000956,9.13e-15,21;UBERON:0001869,9.13e-15,21;UBERON:0000203,9.13e-15,21;UBERON:0003076,1.43e-13,12;UBERON:0003057,1.43e-13,12;UBERON:0004111,2.16e-10,122;UBERON:0000025,4.46e-10,114;UBERON:0002240,3.92e-08,6;UBERON:0005174,3.92e-08,6;UBERON:0001137,3.92e-08,6;UBERON:0007023,7.45e-08,51;UBERON:0000970,1.32e-07,9;UBERON:0000019,1.32e-07,9;UBERON:0000047,1.32e-07,9;UBERON:0010312,1.32e-07,9;UBERON:0004088,1.32e-07,9;UBERON:0002104,1.32e-07,9;UBERON:0001456,1.32e-07,9;UBERON:0003072,1.32e-07,9;UBERON:0004128,1.32e-07,9;UBERON:0003071,1.32e-07,9;UBERON:0000483,3.42e-07,174;UBERON:0000119,5.46e-07,176;UBERON:0004733,5.58e-07,6;UBERON:0004732,5.58e-07,6;UBERON:0002028,5.58e-07,6;UBERON:0007277,5.58e-07,6;UBERON:0002950,6.99e-07,4;UBERON:0001891,6.99e-07,4;UBERON:0009616,6.99e-07,4;UBERON:0010286,6.99e-07,4;UBERON:0001948,7.47e-07,5;UBERON:0002315,7.47e-07,5|phase1_expression=0.480446541314382,0,0,0,0,0.33575854382378,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,3.74190476664707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52617609466313,1.5378032791413,2.52758868796568,1.1198913730029,0,0,0,0,0,0,0,1.01158230429799,0.528990979272033,0.633831403506179,0,0,0,0,0,0.299600110518405,1.92109152660777,0,0.270011876663381,0.210324961351382,6.28432165688368,2.87129103237098,0.857435594504678,0.766763768145891,0,36.3382407297983,21.7068474744819,28.1099955858926,0.923204014111357,0.548925861614458,0.52091337055676,20.6595419261022,6.75315132038016,10.6958773443767,2.06240009831567,2.42031857358475,1.3047961207771,0.151452386666368,0.226714680320357,0,0,0,0,0,0,0.983110940922263,0,0,0,0.281686839553361,0,0,0,0,0,0,0.79928715803342,0,0.29688427812965,0,0,0,0,0.352766121407114,0.251333182659351,0,0,0,0.161766849947409,0.662524555381181,0,1.86391761218122,45.3810235367898,47.9632958602812,0,0,0,0,17.8250860891739,10.980014467647,0.628271760564322,22.2495129846114,24.8043993610421,23.6878370797899,13.9527486238272,0,1.61729061793121,3.0326731012041,47.1389757185702,0.260240885925407,0.919608417733892,1.26043490863744,1.80845781402858,2.58538696775046,4.61209393025459,3.37326208415024,73.4717572898804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.3466752678997,1.64647379806855,0,0,0,0,0,0.201683524623343,0,0.190225626112559,0,0,0.251335208800269,0,0.38992817423824,0.898819408654221,0,0.398282546508734,0.379335801906163,0.114248512609729,1.1270773567308,0.407302655690628,0.387904974335251,0.140271639780637,0.316182685621286,0.295220295959204,0.156998727841375,0.246794327843601,0,0.333690211432188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1894914117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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=235283 | |||
|HGNC= | |||
|MCL_coexpression_id=694 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENSMUST00000149492_5end | |||
|cluster_id=chr9:40183944..40184000,- | |||
|description=CAGE_peak_4_at_Gramd1b_5end | |||
|id=chr9:40183944..40184000,- | |||
|ontology_enrichment_celltype=CL:0000117!1.25e-09!23;CL:0000337!1.25e-09!23;CL:0000221!9.01e-07!44;CL:0000133!9.01e-07!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.70e-07,23;CL:0000337,3.70e-07,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!1.34e-26!63;UBERON:0002346!2.49e-22!71;UBERON:0003075!2.49e-22!71;UBERON:0007284!2.49e-22!71;UBERON:0004121!3.24e-22!102;UBERON:0000924!3.24e-22!102;UBERON:0006601!3.24e-22!102;UBERON:0001049!1.78e-21!52;UBERON:0005068!1.78e-21!52;UBERON:0006241!1.78e-21!52;UBERON:0007135!1.78e-21!52;UBERON:0000955!6.23e-21!50;UBERON:0006238!6.23e-21!50;UBERON:0000073!8.94e-21!75;UBERON:0001016!8.94e-21!75;UBERON:0001017!1.32e-20!73;UBERON:0005743!1.32e-20!73;UBERON:0002616!3.23e-20!49;UBERON:0003056!3.44e-20!49;UBERON:0002020!1.37e-17!34;UBERON:0007811!4.77e-17!86;UBERON:0003080!4.88e-15!40;UBERON:0002791!1.08e-14!29;UBERON:0003528!1.08e-14!29;UBERON:0001893!1.08e-14!29;UBERON:0002780!2.37e-14!39;UBERON:0001890!2.37e-14!39;UBERON:0006240!2.37e-14!39;UBERON:0000153!1.47e-13!94;UBERON:0002619!8.69e-11!17;UBERON:0000956!1.49e-10!21;UBERON:0001869!1.49e-10!21;UBERON:0000203!1.49e-10!21;UBERON:0002021!5.38e-09!10;UBERON:0000411!5.38e-09!10;UBERON:0001950!5.38e-09!10;UBERON:0003076!3.06e-07!12;UBERON:0003057!3.06e-07!12;UBERON:0000489!7.65e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,2.33e-33,64;UBERON:0003075,2.33e-33,64;UBERON:0007284,2.33e-33,64;UBERON:0000073,1.86e-31,54;UBERON:0004121,1.04e-28,95;UBERON:0000924,1.04e-28,95;UBERON:0006601,1.04e-28,95;UBERON:0001049,2.84e-28,52;UBERON:0005068,2.84e-28,52;UBERON:0006241,2.84e-28,52;UBERON:0007135,2.84e-28,52;UBERON:0001017,5.91e-28,73;UBERON:0010371,7.38e-28,73;UBERON:0001016,6.56e-27,75;UBERON:0000955,6.33e-23,47;UBERON:0006238,6.33e-23,47;UBERON:0003056,7.40e-23,49;UBERON:0002616,1.01e-21,46;UBERON:0002020,1.67e-21,34;UBERON:0010314,8.42e-20,92;UBERON:0002619,1.97e-16,17;UBERON:0002021,2.13e-16,10;UBERON:0000411,2.13e-16,10;UBERON:0001950,2.13e-16,10;UBERON:0003080,2.20e-16,40;UBERON:0003528,2.81e-16,29;UBERON:0002791,2.81e-16,29;UBERON:0001893,2.81e-16,29;UBERON:0002780,2.97e-15,39;UBERON:0001890,2.97e-15,39;UBERON:0006240,2.97e-15,39;UBERON:0000956,9.13e-15,21;UBERON:0001869,9.13e-15,21;UBERON:0000203,9.13e-15,21;UBERON:0003076,1.43e-13,12;UBERON:0003057,1.43e-13,12;UBERON:0004111,2.16e-10,122;UBERON:0000025,4.46e-10,114;UBERON:0002240,3.92e-08,6;UBERON:0005174,3.92e-08,6;UBERON:0001137,3.92e-08,6;UBERON:0007023,7.45e-08,51;UBERON:0000970,1.32e-07,9;UBERON:0000019,1.32e-07,9;UBERON:0000047,1.32e-07,9;UBERON:0010312,1.32e-07,9;UBERON:0004088,1.32e-07,9;UBERON:0002104,1.32e-07,9;UBERON:0001456,1.32e-07,9;UBERON:0003072,1.32e-07,9;UBERON:0004128,1.32e-07,9;UBERON:0003071,1.32e-07,9;UBERON:0000483,3.42e-07,174;UBERON:0000119,5.46e-07,176;UBERON:0004733,5.58e-07,6;UBERON:0004732,5.58e-07,6;UBERON:0002028,5.58e-07,6;UBERON:0007277,5.58e-07,6;UBERON:0002950,6.99e-07,4;UBERON:0001891,6.99e-07,4;UBERON:0009616,6.99e-07,4;UBERON:0010286,6.99e-07,4;UBERON:0001948,7.47e-07,5;UBERON:0002315,7.47e-07,5 | |||
|phase1_expression=0.480446541314382,0,0,0,0,0.33575854382378,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,3.74190476664707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52617609466313,1.5378032791413,2.52758868796568,1.1198913730029,0,0,0,0,0,0,0,1.01158230429799,0.528990979272033,0.633831403506179,0,0,0,0,0,0.299600110518405,1.92109152660777,0,0.270011876663381,0.210324961351382,6.28432165688368,2.87129103237098,0.857435594504678,0.766763768145891,0,36.3382407297983,21.7068474744819,28.1099955858926,0.923204014111357,0.548925861614458,0.52091337055676,20.6595419261022,6.75315132038016,10.6958773443767,2.06240009831567,2.42031857358475,1.3047961207771,0.151452386666368,0.226714680320357,0,0,0,0,0,0,0.983110940922263,0,0,0,0.281686839553361,0,0,0,0,0,0,0.79928715803342,0,0.29688427812965,0,0,0,0,0.352766121407114,0.251333182659351,0,0,0,0.161766849947409,0.662524555381181,0,1.86391761218122,45.3810235367898,47.9632958602812,0,0,0,0,17.8250860891739,10.980014467647,0.628271760564322,22.2495129846114,24.8043993610421,23.6878370797899,13.9527486238272,0,1.61729061793121,3.0326731012041,47.1389757185702,0.260240885925407,0.919608417733892,1.26043490863744,1.80845781402858,2.58538696775046,4.61209393025459,3.37326208415024,73.4717572898804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.3466752678997,1.64647379806855,0,0,0,0,0,0.201683524623343,0,0.190225626112559,0,0,0.251335208800269,0,0.38992817423824,0.898819408654221,0,0.398282546508734,0.379335801906163,0.114248512609729,1.1270773567308,0.407302655690628,0.387904974335251,0.140271639780637,0.316182685621286,0.295220295959204,0.156998727841375,0.246794327843601,0,0.333690211432188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189491411770485,0,0,0,0,0,0,0,0,0.159454768657487,0,0,0,0,0,0,0.275936746304732,17.6605648986571,16.4096361229084,0,0.252470927204373,0,0,0,0,0,0,0,0,0,14.7807805554031,0.425820255624806,0.35613120733451,0.81443479676788,3.79431282836832,0,0,0,0.377210159511796,0.295301892880773,0,0,0,0,0.316036757935816,0,0,6.12791290356818,0,0,0,0,0.713475270408282,0.493647061806363,0.304464949114599,0,0,10.5853631066382,0,0,0.120625849856312,0,0.164140899745061,0.291480836629851,13.5360470467672,0,0,0.185194527369712,0,0,0,0,0,0,0,0,0,0,0,0.436725127492355,0,0,0,1.16653475962614,0.621339313086926,0,0,0,0,0,0,0,0.13020438484395,0,0,0.576060012515731,0.316011120628178,0.405450430580328,0,0.129920822977795,0,0,0.120195449519969,0,0,0,0.100826185136841,0.0974578807397524,0,0.116876902181569,0,0,0,0,0.19318959403219,0,1.83151624267265,0,12.0377304968487,19.2015626489803,22.0956113523445,20.6242384838183,25.9498305338968,17.8121455140367,20.3956352295219,25.6508550088086,21.1650965515384,18.1256963593682,19.6748918465692,0,0,0,0.243106717068294,0.419226325255965,0.183843508450014,0,0.206035057238894,0.320919209591815,0.252697211763798,0.25347929989024,0.377252682772152,0.468207537349412,0.448176066834085,0.114870937911227,1.42888107384922,0.347652977834566,0.192909220463705,0.412085900803307,0.441596760403192,0.342869252385415,0.354951612318675,0.715308569841963,0.436039249896986,0.376437521661322,0.338458431566706,0.548783918618318,0,0.407412341537585,0.561142271657738,0.118635018124174,0.0985044823755635,0,0,0,0,0.233931608445408,0.214871054048298,0,0.661774257358546,0.231867835620421 | |||
|short_description=p4@Gramd1b | |||
}} |
Latest revision as of 15:10, 26 September 2015
Short description: | p4@Gramd1b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Gramd1b_5end |
Coexpression cluster: | MCL_coexpression_mm9:694 |
Association with transcript: | 0bp_to_ENSMUST00000149492_5end |
EntrezGene: | Gramd1b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
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Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.70e-07 | 23 |
neuroblast (sensu Vertebrata) | 3.70e-07 | 23 |