FFCP PHASE1:Mm9::chrX:70070500..70070522,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=57249|HGNC=|MCL_coexpression_id=159|UniProt=B1AUQ5|association_with_transcript=0bp_to_ENSMUST00000114553_5end|description=CAGE_peak_2_at_Gabrq_5end|id=chrX:70070500..70070522,+|ontology_enrichment_celltype=CL:0000117!1.74e-13!23;CL:0000337!1.74e-13!23;CL:0000540!6.70e-08!33;CL:0000047!6.70e-08!33;CL:0000031!6.70e-08!33;CL:0000404!6.70e-08!33|ontology_enrichment_celltype_v019_2=CL:0000117,5.62e-26,23;CL:0000337,5.62e-26,23;CL:0000540,9.53e-17,33;CL:0000047,9.53e-17,33;CL:0000031,9.53e-17,33;CL:0000404,9.53e-17,33;CL:0000393,1.70e-13,39;CL:0000211,1.70e-13,39;CL:0000221,6.37e-13,44;CL:0000133,6.37e-13,44;CL:0002319,7.74e-12,43;CL:0002614,2.52e-08,3;CL:0002610,6.49e-08,3;CL:0002612,1.08e-07,3;CL:0002613,1.98e-07,3;CL:0000120,3.94e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!1.72e-19!71;UBERON:0003075!1.72e-19!71;UBERON:0007284!1.72e-19!71;UBERON:0000033!5.48e-19!63;UBERON:0001049!5.42e-18!52;UBERON:0005068!5.42e-18!52;UBERON:0006241!5.42e-18!52;UBERON:0007135!5.42e-18!52;UBERON:0003056!8.36e-17!49;UBERON:0000955!4.84e-16!50;UBERON:0006238!4.84e-16!50;UBERON:0002616!6.53e-16!49;UBERON:0001017!2.54e-15!73;UBERON:0005743!2.54e-15!73;UBERON:0002020!4.35e-15!34;UBERON:0000073!2.74e-14!75;UBERON:0001016!2.74e-14!75;UBERON:0004121!8.97e-14!102;UBERON:0000924!8.97e-14!102;UBERON:0006601!8.97e-14!102;UBERON:0003080!1.24e-13!40;UBERON:0002780!6.66e-13!39;UBERON:0001890!6.66e-13!39;UBERON:0006240!6.66e-13!39;UBERON:0002791!1.74e-11!29;UBERON:0003528!1.74e-11!29;UBERON:0001893!1.74e-11!29;UBERON:0007811!6.18e-09!86;UBERON:0000153!2.11e-08!94;UBERON:0002420!3.55e-07!8;UBERON:0007245!3.55e-07!8;UBERON:0010009!3.55e-07!8;UBERON:0010011!3.55e-07!8;UBERON:0000454!3.55e-07!8;UBERON:0002619!8.51e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.44e-28,54;UBERON:0001017,3.81e-26,73;UBERON:0001016,3.07e-25,75;UBERON:0001049,8.36e-25,52;UBERON:0005068,8.36e-25,52;UBERON:0006241,8.36e-25,52;UBERON:0007135,8.36e-25,52;UBERON:0002020,2.43e-23,34;UBERON:0004121,5.13e-21,95;UBERON:0000924,5.13e-21,95;UBERON:0006601,5.13e-21,95;UBERON:0002346,1.87e-20,64;UBERON:0003075,1.87e-20,64;UBERON:0007284,1.87e-20,64;UBERON:0010371,1.54e-18,73;UBERON:0002420,2.55e-17,8;UBERON:0007245,2.55e-17,8;UBERON:0010009,2.55e-17,8;UBERON:0010011,2.55e-17,8;UBERON:0000454,2.55e-17,8;UBERON:0002616,8.39e-16,46;UBERON:0000955,2.35e-15,47;UBERON:0006238,2.35e-15,47;UBERON:0003528,5.52e-15,29;UBERON:0002791,5.52e-15,29;UBERON:0001893,5.52e-15,29;UBERON:0003080,6.02e-15,40;UBERON:0002240,1.04e-13,6;UBERON:0005174,1.04e-13,6;UBERON:0001137,1.04e-13,6;UBERON:0002780,1.72e-13,39;UBERON:0001890,1.72e-13,39;UBERON:0006240,1.72e-13,39;UBERON:0010314,2.90e-13,92;UBERON:0003056,1.11e-12,49;UBERON:0001948,6.80e-12,5;UBERON:0002315,6.80e-12,5;UBERON:0003076,2.85e-11,12;UBERON:0003057,2.85e-11,12;UBERON:0000369,1.24e-10,5;UBERON:0002435,1.24e-10,5;UBERON:0000204,1.24e-10,5;UBERON:0010082,1.24e-10,5;UBERON:0002950,1.55e-10,4;UBERON:0001891,1.55e-10,4;UBERON:0009616,1.55e-10,4;UBERON:0010286,1.55e-10,4;UBERON:0002038,2.52e-08,3;UBERON:0009663,2.52e-08,3;UBERON:0009661,2.52e-08,3;UBERON:0000125,2.52e-08,3;UBERON:0002308,2.52e-08,3;UBERON:0004684,6.49e-08,3;UBERON:0002275,6.49e-08,3;UBERON:0000025,9.32e-08,114;UBERON:0002257,1.08e-07,3;UBERON:0004111,1.43e-07,122;UBERON:0011216,6.43e-07,194|phase1_expression=0.640595388419176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.36069264241712,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0.219686182734472,0.194429899074283,0,0,0,0,0,0,0,0,2.83243045203437,6.87688273053643,2.53532561402472,0,0,0,0,0,0,0,0.103689612308478,0.135005938331691,0,8.56952953211411,7.95126747425809,0.857435594504678,0.958454710182364,0.919218786610021,8.8092704799511,5.2351808614927,9.06278546211836,5.53922408466814,4.7573574673253,4.68822033501084,8.93385596804419,14.069065250792,12.835052813252,10.606629077052,8.11518580554887,2.79599168737951,0,0,0,0,0,0,0,0,0.561777680527007,0,0,0,1.54927761754349,0,0,0,0,0,0,0.11418387971906,0,0.445326417194474,0.173485326766136,0.608930956624282,0,0,0.117588707135705,0.251333182659351,0,0.722996784599558,0,0.161766849947409,0,0,0,0,0.41889341362691,0.510914110417183,0,0,0,10.1857634795279,3.66000482254901,1.13088916901578,1.91206752211504,0,7.06479351502504,4.38051410282946,0.305518091550949,0.248813941220186,0,0.420883711772948,0.390361328888111,0.919608417733892,0.540186389416048,0.753524089178575,1.15662048557257,0.512454881139399,0.843315521037559,0.258703370739016,0,0.189106080167819,0.175951124163949,0,0.834141747676794,0,0.61734640922383,0.199034266818493,0,0,0,0,0.234526059981096,0,0,0.196764231747404,0,0.232533944750408,0,0,0.16455984991348,0.164167464079095,0.0810688095458557,0.292399974850665,0,0.402619256281115,0.630869845692382,1.13195073617213,0,0,0,0.232236671860439,0.257734922644187,0.201683524623343,0,0.190225626112559,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0701358198903186,0.0632365371242573,0,0,0,0.296452627087149,0,0,0,0,0.482354319504834,0,0,0,0,0,0,0,0.252578877947112,0,0,0,0.189491411770485,0,0.339490171550376,0.704070744865506,0.335012514883631,0.238043640886014,0.390267295715598,0.472905432318573,0.221464689648775,0.159454768657487,0,0,0,0,0,0,0,5.13761887960934,6.44664276257117,0,0.504941854408746,0,0,0.430846795465598,0,0,0,0,0,0,0.321321316421807,0.283880170416537,0.534196811001766,0.325773918707152,0.329940245945071,3.98235415019888,0,0,0.565815239267694,0,0.614870295887855,0,0.363533729477506,0,0,0,0,0.340439605753788,0.36012218806262,0.258717367565509,0,0.354680467284547,0.356737635204141,0.329098041204242,0.304464949114599,0,0,0.220528398054962,0,0,0.0603129249281559,0,0,0.291480836629851,3.70850604021019,0.683483523191411,4.33412422722767,2.59272338317596,0.941842285023455,0.956859594047176,0.686334519619568,0,0,0,0,0,0.406638934253697,0,0.209088296014469,0.218362563746178,0.134864346384821,0.165306911450672,0,0,0,0,0.149516546043979,0,0.777804753376191,0.387479470433193,0,0.117357238645754,0,0,0,0.288030006257865,0.316011120628178,0,0,0,0,0,0,0,0,0.0762068066549998,0,0,0,0,0,0,0,0,0.19318959403219,0,0,0,0,2.25900737046827,2.30162618253588,1.71868654031819,1.3748254587495,2.05524755931193,0,1.35004500046361,0.45032120322422,0.453142408984205,0.51776031175182,0.103787347584177,0,0.853668028770671,0.486213434136588,0.838452650511929,0.735374033800057,0.888986911206461,1.44224540067226,0.962757628775446,0.505394423527595,1.52087579934144,0.377252682772152,0.561849044819294,0.384150914429216,0.402048282689293,0.476293691283074,0.463537303779422,0.578727661391115,0.412085900803307,0.441596760403192,0.342869252385415,0.532427418478012,0.238436189947321,0.290692833264657,0.752875043322645,0.761531471025089,0.73171189149109,0.263069711437843,0.950628796921032,1.12228454331548,0.355905054372522,0.29551344712669,1.63692417267876,0.464810523557898,0.192906610981141,0.749431733813838,0.701794825336225,0.859484216193193,0.57386499620653,0.441182838239031,0.231867835620421|short_description=p2@Gabrq}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=57249 | |||
|HGNC= | |||
|MCL_coexpression_id=159 | |||
|TSSclassifier=NA | |||
|UniProt=B1AUQ5 | |||
|association_with_transcript=0bp_to_ENSMUST00000114553_5end | |||
|cluster_id=chrX:70070500..70070522,+ | |||
|description=CAGE_peak_2_at_Gabrq_5end | |||
|id=chrX:70070500..70070522,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.74e-13!23;CL:0000337!1.74e-13!23;CL:0000540!6.70e-08!33;CL:0000047!6.70e-08!33;CL:0000031!6.70e-08!33;CL:0000404!6.70e-08!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,5.62e-26,23;CL:0000337,5.62e-26,23;CL:0000540,9.53e-17,33;CL:0000047,9.53e-17,33;CL:0000031,9.53e-17,33;CL:0000404,9.53e-17,33;CL:0000393,1.70e-13,39;CL:0000211,1.70e-13,39;CL:0000221,6.37e-13,44;CL:0000133,6.37e-13,44;CL:0002319,7.74e-12,43;CL:0002614,2.52e-08,3;CL:0002610,6.49e-08,3;CL:0002612,1.08e-07,3;CL:0002613,1.98e-07,3;CL:0000120,3.94e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!1.72e-19!71;UBERON:0003075!1.72e-19!71;UBERON:0007284!1.72e-19!71;UBERON:0000033!5.48e-19!63;UBERON:0001049!5.42e-18!52;UBERON:0005068!5.42e-18!52;UBERON:0006241!5.42e-18!52;UBERON:0007135!5.42e-18!52;UBERON:0003056!8.36e-17!49;UBERON:0000955!4.84e-16!50;UBERON:0006238!4.84e-16!50;UBERON:0002616!6.53e-16!49;UBERON:0001017!2.54e-15!73;UBERON:0005743!2.54e-15!73;UBERON:0002020!4.35e-15!34;UBERON:0000073!2.74e-14!75;UBERON:0001016!2.74e-14!75;UBERON:0004121!8.97e-14!102;UBERON:0000924!8.97e-14!102;UBERON:0006601!8.97e-14!102;UBERON:0003080!1.24e-13!40;UBERON:0002780!6.66e-13!39;UBERON:0001890!6.66e-13!39;UBERON:0006240!6.66e-13!39;UBERON:0002791!1.74e-11!29;UBERON:0003528!1.74e-11!29;UBERON:0001893!1.74e-11!29;UBERON:0007811!6.18e-09!86;UBERON:0000153!2.11e-08!94;UBERON:0002420!3.55e-07!8;UBERON:0007245!3.55e-07!8;UBERON:0010009!3.55e-07!8;UBERON:0010011!3.55e-07!8;UBERON:0000454!3.55e-07!8;UBERON:0002619!8.51e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.44e-28,54;UBERON:0001017,3.81e-26,73;UBERON:0001016,3.07e-25,75;UBERON:0001049,8.36e-25,52;UBERON:0005068,8.36e-25,52;UBERON:0006241,8.36e-25,52;UBERON:0007135,8.36e-25,52;UBERON:0002020,2.43e-23,34;UBERON:0004121,5.13e-21,95;UBERON:0000924,5.13e-21,95;UBERON:0006601,5.13e-21,95;UBERON:0002346,1.87e-20,64;UBERON:0003075,1.87e-20,64;UBERON:0007284,1.87e-20,64;UBERON:0010371,1.54e-18,73;UBERON:0002420,2.55e-17,8;UBERON:0007245,2.55e-17,8;UBERON:0010009,2.55e-17,8;UBERON:0010011,2.55e-17,8;UBERON:0000454,2.55e-17,8;UBERON:0002616,8.39e-16,46;UBERON:0000955,2.35e-15,47;UBERON:0006238,2.35e-15,47;UBERON:0003528,5.52e-15,29;UBERON:0002791,5.52e-15,29;UBERON:0001893,5.52e-15,29;UBERON:0003080,6.02e-15,40;UBERON:0002240,1.04e-13,6;UBERON:0005174,1.04e-13,6;UBERON:0001137,1.04e-13,6;UBERON:0002780,1.72e-13,39;UBERON:0001890,1.72e-13,39;UBERON:0006240,1.72e-13,39;UBERON:0010314,2.90e-13,92;UBERON:0003056,1.11e-12,49;UBERON:0001948,6.80e-12,5;UBERON:0002315,6.80e-12,5;UBERON:0003076,2.85e-11,12;UBERON:0003057,2.85e-11,12;UBERON:0000369,1.24e-10,5;UBERON:0002435,1.24e-10,5;UBERON:0000204,1.24e-10,5;UBERON:0010082,1.24e-10,5;UBERON:0002950,1.55e-10,4;UBERON:0001891,1.55e-10,4;UBERON:0009616,1.55e-10,4;UBERON:0010286,1.55e-10,4;UBERON:0002038,2.52e-08,3;UBERON:0009663,2.52e-08,3;UBERON:0009661,2.52e-08,3;UBERON:0000125,2.52e-08,3;UBERON:0002308,2.52e-08,3;UBERON:0004684,6.49e-08,3;UBERON:0002275,6.49e-08,3;UBERON:0000025,9.32e-08,114;UBERON:0002257,1.08e-07,3;UBERON:0004111,1.43e-07,122;UBERON:0011216,6.43e-07,194 | |||
|phase1_expression=0.640595388419176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.36069264241712,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0.219686182734472,0.194429899074283,0,0,0,0,0,0,0,0,2.83243045203437,6.87688273053643,2.53532561402472,0,0,0,0,0,0,0,0.103689612308478,0.135005938331691,0,8.56952953211411,7.95126747425809,0.857435594504678,0.958454710182364,0.919218786610021,8.8092704799511,5.2351808614927,9.06278546211836,5.53922408466814,4.7573574673253,4.68822033501084,8.93385596804419,14.069065250792,12.835052813252,10.606629077052,8.11518580554887,2.79599168737951,0,0,0,0,0,0,0,0,0.561777680527007,0,0,0,1.54927761754349,0,0,0,0,0,0,0.11418387971906,0,0.445326417194474,0.173485326766136,0.608930956624282,0,0,0.117588707135705,0.251333182659351,0,0.722996784599558,0,0.161766849947409,0,0,0,0,0.41889341362691,0.510914110417183,0,0,0,10.1857634795279,3.66000482254901,1.13088916901578,1.91206752211504,0,7.06479351502504,4.38051410282946,0.305518091550949,0.248813941220186,0,0.420883711772948,0.390361328888111,0.919608417733892,0.540186389416048,0.753524089178575,1.15662048557257,0.512454881139399,0.843315521037559,0.258703370739016,0,0.189106080167819,0.175951124163949,0,0.834141747676794,0,0.61734640922383,0.199034266818493,0,0,0,0,0.234526059981096,0,0,0.196764231747404,0,0.232533944750408,0,0,0.16455984991348,0.164167464079095,0.0810688095458557,0.292399974850665,0,0.402619256281115,0.630869845692382,1.13195073617213,0,0,0,0.232236671860439,0.257734922644187,0.201683524623343,0,0.190225626112559,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0701358198903186,0.0632365371242573,0,0,0,0.296452627087149,0,0,0,0,0.482354319504834,0,0,0,0,0,0,0,0.252578877947112,0,0,0,0.189491411770485,0,0.339490171550376,0.704070744865506,0.335012514883631,0.238043640886014,0.390267295715598,0.472905432318573,0.221464689648775,0.159454768657487,0,0,0,0,0,0,0,5.13761887960934,6.44664276257117,0,0.504941854408746,0,0,0.430846795465598,0,0,0,0,0,0,0.321321316421807,0.283880170416537,0.534196811001766,0.325773918707152,0.329940245945071,3.98235415019888,0,0,0.565815239267694,0,0.614870295887855,0,0.363533729477506,0,0,0,0,0.340439605753788,0.36012218806262,0.258717367565509,0,0.354680467284547,0.356737635204141,0.329098041204242,0.304464949114599,0,0,0.220528398054962,0,0,0.0603129249281559,0,0,0.291480836629851,3.70850604021019,0.683483523191411,4.33412422722767,2.59272338317596,0.941842285023455,0.956859594047176,0.686334519619568,0,0,0,0,0,0.406638934253697,0,0.209088296014469,0.218362563746178,0.134864346384821,0.165306911450672,0,0,0,0,0.149516546043979,0,0.777804753376191,0.387479470433193,0,0.117357238645754,0,0,0,0.288030006257865,0.316011120628178,0,0,0,0,0,0,0,0,0.0762068066549998,0,0,0,0,0,0,0,0,0.19318959403219,0,0,0,0,2.25900737046827,2.30162618253588,1.71868654031819,1.3748254587495,2.05524755931193,0,1.35004500046361,0.45032120322422,0.453142408984205,0.51776031175182,0.103787347584177,0,0.853668028770671,0.486213434136588,0.838452650511929,0.735374033800057,0.888986911206461,1.44224540067226,0.962757628775446,0.505394423527595,1.52087579934144,0.377252682772152,0.561849044819294,0.384150914429216,0.402048282689293,0.476293691283074,0.463537303779422,0.578727661391115,0.412085900803307,0.441596760403192,0.342869252385415,0.532427418478012,0.238436189947321,0.290692833264657,0.752875043322645,0.761531471025089,0.73171189149109,0.263069711437843,0.950628796921032,1.12228454331548,0.355905054372522,0.29551344712669,1.63692417267876,0.464810523557898,0.192906610981141,0.749431733813838,0.701794825336225,0.859484216193193,0.57386499620653,0.441182838239031,0.231867835620421 | |||
|short_description=p2@Gabrq | |||
}} |
Latest revision as of 23:24, 1 October 2015
Short description: | p2@Gabrq |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Gabrq_5end |
Coexpression cluster: | MCL_coexpression_mm9:159 |
Association with transcript: | 0bp_to_ENSMUST00000114553_5end |
EntrezGene: | Gabrq |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 5.62e-26 | 23 |
neuroblast (sensu Vertebrata) | 5.62e-26 | 23 |
neuron | 9.53e-17 | 33 |
neuronal stem cell | 9.53e-17 | 33 |
neuroblast | 9.53e-17 | 33 |
electrically signaling cell | 9.53e-17 | 33 |
electrically responsive cell | 1.70e-13 | 39 |
electrically active cell | 1.70e-13 | 39 |
ectodermal cell | 6.37e-13 | 44 |
neurectodermal cell | 6.37e-13 | 44 |
neural cell | 7.74e-12 | 43 |
neuron of the substantia nigra | 2.52e-08 | 3 |
raphe nuclei neuron | 6.49e-08 | 3 |
neuron of the ventral spinal cord | 1.08e-07 | 3 |
striatum neuron | 1.98e-07 | 3 |
granule cell | 3.94e-07 | 3 |