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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS008314
|DRA_sample_Accession=CAGE@SAMD00005323
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005323
|accession_numbers=CAGE;DRX008422;DRR009294;DRZ000719;DRZ002104;DRZ012069;DRZ013454
|accession_numbers_RNASeq=sRNA-Seq;DRX037157;DRR041523;DRZ007165
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002367,UBERON:0002384,UBERON:0000479,UBERON:0005156,UBERON:0004119,UBERON:0000062,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002530,UBERON:0010147,UBERON:0010317,UBERON:0003937,UBERON:0005399,UBERON:0003101,UBERON:0000079
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002367,UBERON:0002384,UBERON:0000479,UBERON:0005156,UBERON:0004119,UBERON:0000062,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002530,UBERON:0010147,UBERON:0010317,UBERON:0003937,UBERON:0005399,UBERON:0003101,UBERON:0000079
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000499,CL:0000255,CL:0002622
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000499,CL:0000255,CL:0002622
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!2.11!128.25!TCF21;;chr16:86544113..86544145,+!p1@FOXF1!2.06!140.65!FOXF1;;chr5:134369879..134369898,-!p2@PITX1!1.93!84.62!PITX1;;chr5:134369905..134369972,-!p1@PITX1!1.77!87.03!PITX1;;chr15:57511609..57511651,+!p2@TCF12!1.62!66.48!TCF12;;chr11:46299199..46299233,+!p1@CREB3L1!1.56!175.55!CREB3L1;;chr10:28034739..28034756,-!p1@MKX!1.36!21.70!MKX;;chr11:46299539..46299620,+!p2@CREB3L1!1.28!30.66!CREB3L1;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.24!16.30!SEBOX;;chr7:27224842..27224872,-!p1@HOXA11!1.17!13.78!HOXA11;;chr18:19749541..19749557,+!p1@GATA6!1.14!40.07!GATA6;;chr6:1389789..1389821,+!p1@FOXF2!1.12!16.76!FOXF2;;chr5:92918919..92918942,+!p1@NR2F1!1.10!52.24!NR2F1;;chr17:59477233..59477263,+!p1@TBX2!1.06!32.72!TBX2;;chr5:174151553..174151610,+!p1@MSX2!1.06!17.68!MSX2;;chr19:45260775..45260838,+!p5@BCL3!1.02!12.40!BCL3;;chr2:239756671..239756732,+!p1@TWIST2!1.01!29.97!TWIST2;;chr7:27224795..27224840,-!p2@HOXA11!0.99!8.73!HOXA11;;chr3:25469724..25469773,+!p1@RARB!0.98!12.63!RARB;;chr5:174151612..174151633,+!p2@MSX2!0.97!8.27!MSX2;;chr18:19749386..19749404,+!p2@GATA6!0.96!11.71!GATA6;;chr5:92919100..92919135,+!p3@NR2F1!0.96!9.87!NR2F1;;chr15:67430351..67430366,+!p10@SMAD3!0.93!7.58!SMAD3;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!0.93!7.46!SEBOX;;chr7:27239703..27239715,-!p1@HOXA13!0.92!7.35!HOXA13;;chr5:92918956..92918969,+!p4@NR2F1!0.91!7.81!NR2F1;;chrY:21906594..21906622,-!p1@KDM5D!0.89!6.77!KDM5D;;chr14:61116183..61116208,-!p1@SIX1!0.88!26.18!SIX1;;chr2:239756739..239756755,+!p2@TWIST2!0.86!11.14!TWIST2;;chr3:141121847..141121868,+!p5@ZBTB38!0.82!8.73!ZBTB38;;chr15:57511589..57511608,+!p4@TCF12!0.81!5.51!TCF12;;chr7:27205136..27205164,-!p1@HOXA9!0.81!5.40!HOXA9;;chr7:27213893..27213954,-!p1@HOXA10!0.81!5.40!HOXA10;;chr15:42749722..42749739,-!p2@ZFP106!0.80!9.99!ZFP106;;chr7:27239740..27239759,-!p2@HOXA13!0.79!5.17!HOXA13;;chr11:65667884..65667895,-!p2@FOSL1!0.78!21.13!FOSL1;;chr8:99956662..99956684,+!p1@OSR2!0.78!8.04!OSR2;;chr10:63809106..63809127,+!p1@ARID5B!0.77!72.10!ARID5B;;chr12:115121962..115121987,-!p1@TBX3!0.77!44.66!TBX3;;chr2:66662281..66662308,+!p1@MEIS1!0.77!18.37!MEIS1;;chr8:72756667..72756736,-!p2@MSC!0.77!7.92!MSC;;chr17:59477275..59477286,+!p3@TBX2!0.75!6.31!TBX2;;chr8:72756637..72756664,-!p3@MSC!0.75!5.28!MSC;;chr5:92919375..92919438,+!p6@NR2F1!0.75!5.05!NR2F1;;chr3:25470156..25470227,+!p2@RARB!0.75!4.59!RARB;;chr1:170633348..170633399,+!p2@PRRX1!0.74!6.31!PRRX1;;chr10:28032421..28032494,-!p2@MKX!0.74!4.48!MKX;;chr11:46333934..46333963,+!p5@CREB3L1!0.74!4.48!CREB3L1;;chr9:132427883..132427951,+!p2@PRRX2!0.74!4.48!PRRX2;;chr6:126102292..126102329,+!p3@NCOA7!0.73!15.61!NCOA7;;chr5:92919068..92919082,+!p5@NR2F1!0.73!5.28!NR2F1;;chr7:27205106..27205134,-!p2@HOXA9!0.73!4.36!HOXA9;;chr3:128206762..128206781,-!p2@GATA2!0.72!29.28!GATA2;;chr16:31076332..31076388,-!p3@ZNF668!0.71!4.13!ZNF668;;chr2:19558373..19558392,-!p1@OSR1!0.70!12.06!OSR1;;chr17:1959369..1959388,+!p2@HIC1!0.70!11.71!HIC1;;chr11:46299186..46299195,+!p3@CREB3L1!0.70!4.59!CREB3L1;;chrY:2803415..2803468,+!p1@ZFY!0.70!4.02!ZFY;;chr11:65686802..65686818,+!p6@DRAP1!0.69!7.35!DRAP1;;chr9:132427972..132428056,+!p1@PRRX2!0.69!5.28!PRRX2;;chr2:66662396..66662407,+!p4@MEIS1!0.69!3.90!MEIS1;;chr6:34204921..34204939,+!p3@HMGA1!0.68!130.89!HMGA1;;chr11:65687362..65687436,+!p3@DRAP1!0.68!19.75!DRAP1;;chr2:66662510..66662521,+!p6@MEIS1!0.68!3.79!MEIS1;;chr18:19749517..19749531,+!p3@GATA6!0.67!7.00!GATA6;;chr7:27192185..27192209,-!p1@HOXA3!0.67!3.67!HOXA3;;chr7:27196267..27196311,-!p1@HOXA7!0.66!3.56!HOXA7;;chr2:66662249..66662267,+!p2@MEIS1!0.65!15.16!MEIS1;;chr15:67430381..67430396,+!p21@SMAD3!0.65!3.44!SMAD3;;chr5:321810..321877,+!p1@AHRR!0.64!12.17!AHRR;;chr19:13134772..13134822,+!p2@NFIX!0.63!5.17!NFIX;;chr15:83953397..83953425,-!p1@BNC1!0.63!3.90!BNC1;;chr2:178128149..178128198,-!p2@NFE2L2!0.62!19.86!NFE2L2;;chr11:46299443..46299459,+!p4@CREB3L1!0.62!3.21!CREB3L1;;chr12:100867653..100867677,+!p2@NR1H4!0.62!3.21!NR1H4;;chr2:121493492..121493537,+!p2@GLI2!0.61!5.51!GLI2;;chr11:65686732..65686756,+!p2@DRAP1!0.60!14.70!DRAP1;;chr2:121493425..121493474,+!p1@GLI2!0.60!7.46!GLI2;;chr6:1389824..1389840,+!p3@FOXF2!0.60!2.99!FOXF2;;chr1:164528445..164528459,+!p2@PBX1!0.59!10.45!PBX1;;chr3:25469815..25469866,+!p3@RARB!0.59!2.87!RARB;;chr17:1958388..1958404,+!p1@HIC1!0.58!21.81!HIC1;;chr2:185463247..185463263,+!p1@ZNF804A!0.58!5.51!ZNF804A;;chr15:76629123..76629151,+!p1@ISL2!0.58!3.21!ISL2;;chr10:63853436..63853442,+!p4@ARID5B!0.57!17.57!ARID5B;;chr1:158979872..158979898,+!p3@IFI16!0.57!9.87!IFI16;;chr2:66662895..66662907,+!p3@MEIS1!0.57!3.56!MEIS1;;chr12:100867627..100867652,+!p1@NR1H4!0.57!2.76!NR1H4;;chr17:46132044..46132080,+!p4@NFE2L1!0.57!2.76!NFE2L1;;chr7:1577899..1577943,+!p3@MAFK!0.57!2.76!MAFK;;chr10:63809013..63809041,+!p3@ARID5B!0.56!17.80!ARID5B;;chr12:27485762..27485776,+!p3@ARNTL2!0.56!8.38!ARNTL2;;chr3:12329397..12329433,+!p2@PPARG!0.56!7.00!PPARG;;chr17:26697257..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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000499;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002622;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000079;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000161;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000990;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001353;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002367;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005153;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005157;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005399;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911
|ffid_belonging_in_development=CL:0000134
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
Line 39: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Prostate%2520Stromal%2520Cells%252c%2520donor1.CNhs10883.11254-116F3.hg19.nobarcode.bam
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|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Prostate%2520Stromal%2520Cells%252c%2520donor1.CNhs10883.11254-116F3.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Prostate%2520Stromal%2520Cells%252c%2520donor1.CNhs10883.11254-116F3.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Prostate%2520Stromal%2520Cells%252c%2520donor1.CNhs10883.11254-116F3.hg38.nobarcode.ctss.bed.gz
|id=FF:11254-116F3
|id=FF:11254-116F3
|is_a=EFO:0002091;;FF:0000277
|is_a=EFO:0002091;;FF:0000277
|is_obsolete=
|is_obsolete=
|library_ids=CNhs10883
|library_id=CNhs10883
|library_id_phase_based=2:CNhs10883
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11254
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10010.CCGTCC.11254
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11254
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10010.CCGTCC.11254
|name=Prostate Stromal Cells, donor1
|name=Prostate Stromal Cells, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 48: Line 65:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs10883,LSID703,release008,COMPLETED
|profile_hcage=CNhs10883,LSID703,release008,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10010,,,
|profile_srnaseq=SRhi10010,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|sample_category=primary cells
Line 87: Line 106:
|top_motifs=TAL1_TCF{3,4,12}:1.95175010535;HSF1,2:1.83013764171;EN1,2:1.64342113655;MYBL2:1.57423525319;NKX2-2,8:1.27702301472;ALX4:1.27463564751;HES1:1.14777959286;ZNF238:1.09224137312;YY1:1.06769288396;PAX1,9:0.944557587056;NFE2L1:0.920873263019;KLF4:0.919006495536;UFEwm:0.917069737548;LHX3,4:0.871136635245;MYB:0.859067112888;ESR1:0.81375851635;GLI1..3:0.80686909408;TEAD1:0.801461653947;GTF2A1,2:0.78061024975;TBP:0.766658253418;TLX2:0.735946359447;TBX4,5:0.724507091004;TFAP4:0.697561361242;FOXL1:0.691762317194;NKX3-1:0.67828010503;HOX{A5,B5}:0.669825073904;POU5F1:0.660615574453;FOXD3:0.650138756761;GFI1:0.646837895527;E2F1..5:0.637279897109;SRF:0.634364011855;ZNF384:0.621668614556;ELK1,4_GABP{A,B1}:0.586383278535;TLX1..3_NFIC{dimer}:0.574175536119;MAFB:0.569426497262;CRX:0.56593390602;GFI1B:0.547578389716;NR3C1:0.537122433507;NFE2L2:0.533586230245;bHLH_family:0.479471440758;FOX{I1,J2}:0.475869866462;STAT5{A,B}:0.457901672915;TEF:0.445584254494;HLF:0.442273598498;GZF1:0.426262930435;IKZF1:0.413753231274;CDC5L:0.409197534062;POU3F1..4:0.408669513662;PAX4:0.387339731225;CEBPA,B_DDIT3:0.378305700159;NKX6-1,2:0.375482070508;HMGA1,2:0.369067367084;TP53:0.3497202124;XBP1:0.348142892547;NFIX:0.34678220302;HAND1,2:0.327108864232;MAZ:0.318326581177;STAT2,4,6:0.313593391371;PATZ1:0.308209187104;EVI1:0.297228566979;NFATC1..3:0.277556143779;NFY{A,B,C}:0.262323113741;T:0.251042223634;LEF1_TCF7_TCF7L1,2:0.250579576677;TFDP1:0.245065968356;PRDM1:0.230724133303;HOX{A4,D4}:0.229097865534;GTF2I:0.228255874094;PPARG:0.225041091264;SPZ1:0.210860779268;NR5A1,2:0.208201499753;EBF1:0.196902967293;NR1H4:0.178932887533;ZNF143:0.176895896633;MYFfamily:0.170112304747;HMX1:0.160854184168;IRF1,2:0.149329753761;HOX{A6,A7,B6,B7}:0.132193338865;PBX1:0.129623968769;NRF1:0.127452574458;HNF4A_NR2F1,2:0.117228324641;TFCP2:0.100526365337;HOXA9_MEIS1:0.0987428529156;ATF6:0.082037922093;NANOG{mouse}:0.0802285789233;AHR_ARNT_ARNT2:0.0790272403647;XCPE1{core}:0.0700334126091;FOXA2:0.061646680461;NKX3-2:0.0587490964454;RXR{A,B,G}:0.0570239364661;AIRE:0.0564549299897;NFE2:0.0451762370525;HNF1A:0.0407013643657;ADNP_IRX_SIX_ZHX:0.0388573786283;MZF1:0.028460122563;BACH2:0.0192488192221;TOPORS:0.0090633538622;DBP:0.00539543775079;SOX5:0.000865098166114;PAX8:-0.00462908646355;NHLH1,2:-0.00726311190649;FOXQ1:-0.0125249306682;ZNF148:-0.0160453534418;ZIC1..3:-0.021882279183;FOS_FOS{B,L1}_JUN{B,D}:-0.0305690672407;MTE{core}:-0.0335305144632;RFX1:-0.0414355201161;SOX17:-0.0467133739284;ESRRA:-0.0683245737461;NR6A1:-0.0752550190402;IRF7:-0.116953762675;ZBTB6:-0.121151243172;PRRX1,2:-0.133253682729;ZNF423:-0.133726465523;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.137504803112;STAT1,3:-0.158428910411;NFIL3:-0.162671376055;FOSL2:-0.17488969031;MTF1:-0.190981089407;RREB1:-0.198744498005;VSX1,2:-0.208227300586;HIC1:-0.22841875624;SMAD1..7,9:-0.230443810821;RUNX1..3:-0.243819203632;DMAP1_NCOR{1,2}_SMARC:-0.247921638516;TFAP2B:-0.252138248261;LMO2:-0.258931847486;FOX{F1,F2,J1}:-0.25921555818;FOXO1,3,4:-0.266567672442;ELF1,2,4:-0.275483409964;JUN:-0.278222378072;GATA4:-0.284382315524;HIF1A:-0.319112333628;MED-1{core}:-0.322689730466;FOX{D1,D2}:-0.3242533404;ARID5B:-0.329635707797;PAX5:-0.344472788259;SOX2:-0.344680932324;MEF2{A,B,C,D}:-0.349122027186;TFAP2{A,C}:-0.352827713773;FOXM1:-0.372721221051;NFKB1_REL_RELA:-0.385761713926;ONECUT1,2:-0.389371553207;GATA6:-0.398388573522;POU6F1:-0.407229138423;REST:-0.414244817153;ZFP161:-0.433760990503;OCT4_SOX2{dimer}:-0.449042619365;SP1:-0.454792568436;EGR1..3:-0.461775680972;FOXP3:-0.465627403996;NKX2-3_NKX2-5:-0.487053391897;FOXN1:-0.487248342774;RXRA_VDR{dimer}:-0.503070973165;CDX1,2,4:-0.513615001119;BPTF:-0.515540999193;SPIB:-0.527611476888;PAX2:-0.555206438229;SREBF1,2:-0.563408582169;PDX1:-0.56403945947;ATF2:-0.570886982988;ATF5_CREB3:-0.580279867118;GCM1,2:-0.582152095071;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.594076581207;PAX3,7:-0.597886992901;ETS1,2:-0.60711910637;SPI1:-0.613010562823;RORA:-0.618713095152;AR:-0.619915382008;CREB1:-0.626849847054;MYOD1:-0.680711290465;SNAI1..3:-0.682134967544;PAX6:-0.694312617506;EP300:-0.697385010007;SOX{8,9,10}:-0.700497626275;ATF4:-0.702742539393;PITX1..3:-0.71460139947;BREu{core}:-0.736819135212;CUX2:-0.751389850453;FOXP1:-0.800086063074;TGIF1:-0.81772799906;POU2F1..3:-0.865035167641;HBP1_HMGB_SSRP1_UBTF:-0.877100495781;RFX2..5_RFXANK_RFXAP:-0.877974602434;ZEB1:-0.956656113728;NANOG:-1.01142979085;NKX2-1,4:-1.16754106983;ALX1:-1.22574754973;POU1F1:-1.24625738215;ZBTB16:-1.34440563839;IKZF2:-1.36218283545;RBPJ:-1.44186814656
|top_motifs=TAL1_TCF{3,4,12}:1.95175010535;HSF1,2:1.83013764171;EN1,2:1.64342113655;MYBL2:1.57423525319;NKX2-2,8:1.27702301472;ALX4:1.27463564751;HES1:1.14777959286;ZNF238:1.09224137312;YY1:1.06769288396;PAX1,9:0.944557587056;NFE2L1:0.920873263019;KLF4:0.919006495536;UFEwm:0.917069737548;LHX3,4:0.871136635245;MYB:0.859067112888;ESR1:0.81375851635;GLI1..3:0.80686909408;TEAD1:0.801461653947;GTF2A1,2:0.78061024975;TBP:0.766658253418;TLX2:0.735946359447;TBX4,5:0.724507091004;TFAP4:0.697561361242;FOXL1:0.691762317194;NKX3-1:0.67828010503;HOX{A5,B5}:0.669825073904;POU5F1:0.660615574453;FOXD3:0.650138756761;GFI1:0.646837895527;E2F1..5:0.637279897109;SRF:0.634364011855;ZNF384:0.621668614556;ELK1,4_GABP{A,B1}:0.586383278535;TLX1..3_NFIC{dimer}:0.574175536119;MAFB:0.569426497262;CRX:0.56593390602;GFI1B:0.547578389716;NR3C1:0.537122433507;NFE2L2:0.533586230245;bHLH_family:0.479471440758;FOX{I1,J2}:0.475869866462;STAT5{A,B}:0.457901672915;TEF:0.445584254494;HLF:0.442273598498;GZF1:0.426262930435;IKZF1:0.413753231274;CDC5L:0.409197534062;POU3F1..4:0.408669513662;PAX4:0.387339731225;CEBPA,B_DDIT3:0.378305700159;NKX6-1,2:0.375482070508;HMGA1,2:0.369067367084;TP53:0.3497202124;XBP1:0.348142892547;NFIX:0.34678220302;HAND1,2:0.327108864232;MAZ:0.318326581177;STAT2,4,6:0.313593391371;PATZ1:0.308209187104;EVI1:0.297228566979;NFATC1..3:0.277556143779;NFY{A,B,C}:0.262323113741;T:0.251042223634;LEF1_TCF7_TCF7L1,2:0.250579576677;TFDP1:0.245065968356;PRDM1:0.230724133303;HOX{A4,D4}:0.229097865534;GTF2I:0.228255874094;PPARG:0.225041091264;SPZ1:0.210860779268;NR5A1,2:0.208201499753;EBF1:0.196902967293;NR1H4:0.178932887533;ZNF143:0.176895896633;MYFfamily:0.170112304747;HMX1:0.160854184168;IRF1,2:0.149329753761;HOX{A6,A7,B6,B7}:0.132193338865;PBX1:0.129623968769;NRF1:0.127452574458;HNF4A_NR2F1,2:0.117228324641;TFCP2:0.100526365337;HOXA9_MEIS1:0.0987428529156;ATF6:0.082037922093;NANOG{mouse}:0.0802285789233;AHR_ARNT_ARNT2:0.0790272403647;XCPE1{core}:0.0700334126091;FOXA2:0.061646680461;NKX3-2:0.0587490964454;RXR{A,B,G}:0.0570239364661;AIRE:0.0564549299897;NFE2:0.0451762370525;HNF1A:0.0407013643657;ADNP_IRX_SIX_ZHX:0.0388573786283;MZF1:0.028460122563;BACH2:0.0192488192221;TOPORS:0.0090633538622;DBP:0.00539543775079;SOX5:0.000865098166114;PAX8:-0.00462908646355;NHLH1,2:-0.00726311190649;FOXQ1:-0.0125249306682;ZNF148:-0.0160453534418;ZIC1..3:-0.021882279183;FOS_FOS{B,L1}_JUN{B,D}:-0.0305690672407;MTE{core}:-0.0335305144632;RFX1:-0.0414355201161;SOX17:-0.0467133739284;ESRRA:-0.0683245737461;NR6A1:-0.0752550190402;IRF7:-0.116953762675;ZBTB6:-0.121151243172;PRRX1,2:-0.133253682729;ZNF423:-0.133726465523;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.137504803112;STAT1,3:-0.158428910411;NFIL3:-0.162671376055;FOSL2:-0.17488969031;MTF1:-0.190981089407;RREB1:-0.198744498005;VSX1,2:-0.208227300586;HIC1:-0.22841875624;SMAD1..7,9:-0.230443810821;RUNX1..3:-0.243819203632;DMAP1_NCOR{1,2}_SMARC:-0.247921638516;TFAP2B:-0.252138248261;LMO2:-0.258931847486;FOX{F1,F2,J1}:-0.25921555818;FOXO1,3,4:-0.266567672442;ELF1,2,4:-0.275483409964;JUN:-0.278222378072;GATA4:-0.284382315524;HIF1A:-0.319112333628;MED-1{core}:-0.322689730466;FOX{D1,D2}:-0.3242533404;ARID5B:-0.329635707797;PAX5:-0.344472788259;SOX2:-0.344680932324;MEF2{A,B,C,D}:-0.349122027186;TFAP2{A,C}:-0.352827713773;FOXM1:-0.372721221051;NFKB1_REL_RELA:-0.385761713926;ONECUT1,2:-0.389371553207;GATA6:-0.398388573522;POU6F1:-0.407229138423;REST:-0.414244817153;ZFP161:-0.433760990503;OCT4_SOX2{dimer}:-0.449042619365;SP1:-0.454792568436;EGR1..3:-0.461775680972;FOXP3:-0.465627403996;NKX2-3_NKX2-5:-0.487053391897;FOXN1:-0.487248342774;RXRA_VDR{dimer}:-0.503070973165;CDX1,2,4:-0.513615001119;BPTF:-0.515540999193;SPIB:-0.527611476888;PAX2:-0.555206438229;SREBF1,2:-0.563408582169;PDX1:-0.56403945947;ATF2:-0.570886982988;ATF5_CREB3:-0.580279867118;GCM1,2:-0.582152095071;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.594076581207;PAX3,7:-0.597886992901;ETS1,2:-0.60711910637;SPI1:-0.613010562823;RORA:-0.618713095152;AR:-0.619915382008;CREB1:-0.626849847054;MYOD1:-0.680711290465;SNAI1..3:-0.682134967544;PAX6:-0.694312617506;EP300:-0.697385010007;SOX{8,9,10}:-0.700497626275;ATF4:-0.702742539393;PITX1..3:-0.71460139947;BREu{core}:-0.736819135212;CUX2:-0.751389850453;FOXP1:-0.800086063074;TGIF1:-0.81772799906;POU2F1..3:-0.865035167641;HBP1_HMGB_SSRP1_UBTF:-0.877100495781;RFX2..5_RFXANK_RFXAP:-0.877974602434;ZEB1:-0.956656113728;NANOG:-1.01142979085;NKX2-1,4:-1.16754106983;ALX1:-1.22574754973;POU1F1:-1.24625738215;ZBTB16:-1.34440563839;IKZF2:-1.36218283545;RBPJ:-1.44186814656
|xref=
|xref=
}} {{DRAAccessionNumbers
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11254-116F3;search_select_hide=table117:FF:11254-116F3
|DRA_sample_Accession=CAGE@DRS008314
|accession_numbers=DRX008422;DRR009294;DRZ000719;DRZ002104;CAGE
|library_id=CNhs10883
}}
}}

Latest revision as of 16:28, 3 June 2020

Name:Prostate Stromal Cells, donor1
Species:Human (Homo sapiens)
Library ID:CNhs10883
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueprostate
dev stage55 years old adult
sexmale
age55
cell typeprostatic stromal cell
cell lineNA
companyLonza
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberN/A
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005323
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10883 CAGE DRX008422 DRR009294
Accession ID Hg19

Library idBAMCTSS
CNhs10883 DRZ000719 DRZ002104
Accession ID Hg38

Library idBAMCTSS
CNhs10883 DRZ012069 DRZ013454
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005323
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10010.CCGTCC sRNA-Seq DRX037157 DRR041523
Accession ID Hg19

Library idBAMCTSS
SRhi10010.CCGTCC DRZ007165


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0269
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.369
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.256
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.0898
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0286
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.165
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.16
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.0472
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.355
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0507
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0152
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.0898
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.368
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory-0.0114
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.664
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.129
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0414
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.364
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0898
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0472
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.0472
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.416
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.416
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.332
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.503
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.228
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10883

Jaspar motifP-value
MA0002.20.111
MA0003.10.68
MA0004.10.133
MA0006.10.442
MA0007.10.808
MA0009.10.794
MA0014.10.233
MA0017.10.863
MA0018.22.71662e-5
MA0019.10.461
MA0024.10.0299
MA0025.10.0329
MA0027.10.4
MA0028.10.0636
MA0029.10.764
MA0030.10.354
MA0031.10.113
MA0035.20.897
MA0038.10.156
MA0039.20.0768
MA0040.10.112
MA0041.10.516
MA0042.10.577
MA0043.10.0103
MA0046.10.444
MA0047.20.495
MA0048.10.0205
MA0050.10.285
MA0051.10.0911
MA0052.10.175
MA0055.10.407
MA0057.10.121
MA0058.10.0267
MA0059.10.924
MA0060.10.694
MA0061.10.19
MA0062.20.334
MA0065.20.656
MA0066.10.993
MA0067.10.0103
MA0068.10.373
MA0069.10.206
MA0070.10.946
MA0071.10.529
MA0072.10.406
MA0073.10.769
MA0074.10.483
MA0076.10.156
MA0077.10.397
MA0078.10.832
MA0079.20.0937
MA0080.26.79852e-9
MA0081.10.0356
MA0083.10.1
MA0084.10.269
MA0087.10.508
MA0088.10.0848
MA0090.10.0113
MA0091.19.2341e-4
MA0092.10.418
MA0093.10.174
MA0099.20.28
MA0100.10.282
MA0101.10.00933
MA0102.20.535
MA0103.10.00122
MA0104.20.28
MA0105.10.479
MA0106.10.225
MA0107.10.00686
MA0108.20.0133
MA0111.10.783
MA0112.20.00816
MA0113.10.409
MA0114.10.686
MA0115.10.645
MA0116.10.149
MA0117.10.734
MA0119.10.155
MA0122.10.295
MA0124.10.942
MA0125.10.236
MA0131.10.927
MA0135.10.358
MA0136.17.20599e-9
MA0137.20.562
MA0138.20.441
MA0139.10.665
MA0140.10.724
MA0141.10.82
MA0142.10.0804
MA0143.10.663
MA0144.10.887
MA0145.10.437
MA0146.10.851
MA0147.10.653
MA0148.10.819
MA0149.10.95
MA0150.10.327
MA0152.10.157
MA0153.10.566
MA0154.10.859
MA0155.10.366
MA0156.18.81267e-5
MA0157.10.242
MA0159.10.492
MA0160.10.352
MA0162.10.0762
MA0163.13.77054e-4
MA0164.10.88
MA0258.10.883
MA0259.10.931



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10883

Novel motifP-value
10.991
100.403
1000.0246
1010.113
1020.0214
1030.456
1040.662
1050.275
1060.343
1070.13
1080.799
1090.247
110.901
1100.176
1110.346
1120.716
1130.316
1140.719
1150.0968
1160.166
1170.764
1180.802
1190.056
120.141
1200.378
1210.568
1220.0926
1230.0043
1240.695
1250.453
1260.717
1270.371
1280.52
1290.0273
130.0742
1300.147
1310.693
1320.762
1330.687
1340.429
1350.922
1360.0166
1370.0902
1380.177
1390.286
140.075
1400.201
1410.167
1420.976
1430.877
1440.752
1450.443
1460.794
1470.23
1480.676
1490.355
150.226
1500.337
1510.89
1520.039
1530.668
1540.295
1550.00418
1560.864
1570.15
1580.00499
1590.407
160.157
1600.576
1610.828
1620.809
1630.594
1640.176
1650.855
1660.0742
1670.41
1680.96
1690.0504
170.96
180.219
190.0147
20.374
200.341
210.182
220.711
230.344
240.737
250.365
260.613
270.921
280.0981
290.391
30.919
300.557
310.911
322.39001e-10
330.698
340.861
350.682
360.443
370.284
380.182
390.384
40.0414
400.767
410.0667
420.813
430.894
440.181
450.308
460.825
470.781
480.958
490.183
50.495
500.46
510.705
520.686
530.119
540.723
550.528
560.892
570.644
580.297
590.423
60.985
600.536
610.6
620.578
630.413
640.456
650.64
660.571
670.73
680.835
690.548
70.477
700.145
710.125
720.604
730.0186
740.292
750.657
760.57
770.19
780.129
790.0648
80.108
800.735
810.577
820.164
830.593
840.822
850.164
860.567
870.049
880.332
890.232
90.657
900.188
910.715
920.364
930.618
940.348
950.191
960.305
970.708
980.0362
994.90824e-4



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10883


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000499 (stromal cell)
0000255 (eukaryotic cell)
0002622 (prostate stromal cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002367 (prostate gland)
0002384 (connective tissue)
0000479 (tissue)
0005156 (reproductive structure)
0004119 (endoderm-derived structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002530 (gland)
0010147 (male accessory sex gland)
0010317 (germ layer / neural crest derived structure)
0003937 (sex gland)
0005399 (male reproductive gland)
0003101 (male organism)
0000079 (male reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000277 (human prostate stromal cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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