FF:354-16G2: Difference between revisions

Latest revision as of 19:10, 4 June 2020

Name:	lung, embryo E12
Species:	Mouse (Mus musculus)
Library ID:	CNhs10522
Sample type:	developmental
Genomic View:	UCSC
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	C57BL/6J
tissue	lung
dev stage	12 days embryo
sex	mixture
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004946

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10522		CAGE		DRX009031		DRR009905

Accession ID Mm9

Library id		BAM		CTSS
CNhs10522		DRZ001330		DRZ002713

Accession ID Mm10

Library id		BAM		CTSS
CNhs10522		DRZ012680		DRZ014063

Download raw sequence, BAM & CTSS

Mm9

Fasta	BAM	CTSS
download	download	donwload

Mm10

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs10522

0	0
1	0
10	0
100	0
1000	0
1001	-0.0668
1002	0.194
1003	-0.119
1004	0
1005	-0.0389
1006	-0.0351
1007	0.118
1008	0
1009	-0.0045
101	0.141
1010	0
1011	0
1012	0
1013	-0.164
1014	0.339
1015	0.323
1016	0.26
1017	0
1018	0
1019	0
102	0
1020	0
1021	0.14
1022	-0.12
1023	0
1024	-0.0298
1025	0.713
1026	0.0147
1027	0.107
1028	0
1029	-0.107
103	0
1030	0
1031	0.364
1032	-0.108
1033	1.40711e-4
1034	0
1035	0
1036	0.162
1037	0
1038	-0.0181
1039	-0.157
104	0
1040	-0.016
1041	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10522

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0146
MA0003.1	MA0003.1	0.673
MA0004.1	MA0004.1	0.57
MA0006.1	MA0006.1	0.549
MA0007.1	MA0007.1	0.193
MA0009.1	MA0009.1	0.373
MA0014.1	MA0014.1	0.632
MA0017.1	MA0017.1	1.42932e-4
MA0018.2	MA0018.2	0.329
MA0019.1	MA0019.1	0.897
MA0024.1	MA0024.1	2.18435e-6
MA0025.1	MA0025.1	0.728
MA0027.1	MA0027.1	0.0148
MA0028.1	MA0028.1	0.0211
MA0029.1	MA0029.1	0.948
MA0030.1	MA0030.1	0.421
MA0031.1	MA0031.1	0.114
MA0035.2	MA0035.2	0.296
MA0038.1	MA0038.1	0.00568
MA0039.2	MA0039.2	0.439
MA0040.1	MA0040.1	0.684
MA0041.1	MA0041.1	0.353
MA0042.1	MA0042.1	0.357
MA0043.1	MA0043.1	0.00569
MA0046.1	MA0046.1	7.03748e-6
MA0047.2	MA0047.2	0.534
MA0048.1	MA0048.1	0.261
MA0050.1	MA0050.1	1.16588e-6
MA0051.1	MA0051.1	5.34885e-5
MA0052.1	MA0052.1	0.138
MA0055.1	MA0055.1	0.00987
MA0057.1	MA0057.1	0.236
MA0058.1	MA0058.1	0.284
MA0059.1	MA0059.1	0.49
MA0060.1	MA0060.1	1.51678e-16
MA0061.1	MA0061.1	0.0837
MA0062.2	MA0062.2	0.0515
MA0065.2	MA0065.2	3.21981e-4
MA0066.1	MA0066.1	0.0238
MA0067.1	MA0067.1	0.46
MA0068.1	MA0068.1	0.203
MA0069.1	MA0069.1	0.914
MA0070.1	MA0070.1	0.437
MA0071.1	MA0071.1	0.134
MA0072.1	MA0072.1	0.0481
MA0073.1	MA0073.1	0.893
MA0074.1	MA0074.1	0.396
MA0076.1	MA0076.1	0.0311
MA0077.1	MA0077.1	0.0938
MA0078.1	MA0078.1	0.57
MA0079.2	MA0079.2	0.365
MA0080.2	MA0080.2	1.12909e-6
MA0081.1	MA0081.1	0.606
MA0083.1	MA0083.1	7.41234e-5
MA0084.1	MA0084.1	0.224
MA0087.1	MA0087.1	0.878
MA0088.1	MA0088.1	0.649
MA0090.1	MA0090.1	0.302
MA0091.1	MA0091.1	0.689
MA0092.1	MA0092.1	0.639
MA0093.1	MA0093.1	0.49
MA0099.2	MA0099.2	3.52694e-4
MA0100.1	MA0100.1	0.57
MA0101.1	MA0101.1	0.57
MA0102.2	MA0102.2	0.595
MA0103.1	MA0103.1	3.3923e-4
MA0104.2	MA0104.2	0.339
MA0105.1	MA0105.1	0.00262
MA0106.1	MA0106.1	0.163
MA0107.1	MA0107.1	0.318
MA0108.2	MA0108.2	7.10597e-4
MA0111.1	MA0111.1	0.268
MA0112.2	MA0112.2	1.96819e-6
MA0113.1	MA0113.1	0.583
MA0114.1	MA0114.1	4.08906e-4
MA0115.1	MA0115.1	0.0562
MA0116.1	MA0116.1	0.00872
MA0117.1	MA0117.1	0.192
MA0119.1	MA0119.1	0.071
MA0122.1	MA0122.1	0.599
MA0124.1	MA0124.1	0.799
MA0125.1	MA0125.1	0.139
MA0131.1	MA0131.1	0.16
MA0135.1	MA0135.1	0.102
MA0136.1	MA0136.1	0.202
MA0137.2	MA0137.2	0.421
MA0138.2	MA0138.2	0.00169
MA0139.1	MA0139.1	0.0801
MA0140.1	MA0140.1	0.31
MA0141.1	MA0141.1	0.0156
MA0142.1	MA0142.1	0.404
MA0143.1	MA0143.1	0.229
MA0144.1	MA0144.1	0.445
MA0145.1	MA0145.1	0.0332
MA0146.1	MA0146.1	0.608
MA0147.1	MA0147.1	0.411
MA0148.1	MA0148.1	0.0717
MA0149.1	MA0149.1	0.0183
MA0150.1	MA0150.1	0.00727
MA0152.1	MA0152.1	0.991
MA0153.1	MA0153.1	0.00346
MA0154.1	MA0154.1	0.00287
MA0155.1	MA0155.1	0.823
MA0156.1	MA0156.1	0.982
MA0157.1	MA0157.1	0.161
MA0159.1	MA0159.1	0.0286
MA0160.1	MA0160.1	0.051
MA0162.1	MA0162.1	0.574
MA0163.1	MA0163.1	0.0803
MA0164.1	MA0164.1	0.665
MA0258.1	MA0258.1	1.66496e-4
MA0259.1	MA0259.1	0.488

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10522

Novel motif	Logo	P-value
1	1	0.0554
10	10	0.27
100	100	0.952
101	101	0.636
102	102	0.47
103	103	0.0642
104	104	0.859
105	105	0.673
106	106	0.017
107	107	0.144
108	108	0.978
109	109	0.208
11	11	0.141
110	110	0.284
111	111	0.0178
112	112	0.0316
113	113	0.535
114	114	0.00857
115	115	0.783
116	116	0.646
117	117	0.36
118	118	0.646
119	119	0.0267
12	12	0.568
120	120	0.449
121	121	0.991
122	122	0.907
123	123	0.138
124	124	0.263
125	125	0.491
126	126	0.585
127	127	0.67
128	128	0.0357
129	129	0.0402
13	13	0.692
130	130	0.171
131	131	0.89
132	132	0.376
133	133	0.259
134	134	0.587
135	135	0.469
136	136	0.547
137	137	0.413
138	138	0.859
139	139	0.0021
14	14	0.276
140	140	0.0153
141	141	0.186
142	142	0.397
143	143	0.533
144	144	0.771
145	145	0.716
146	146	0.568
147	147	0.427
148	148	0.0189
149	149	0.383
15	15	0.0963
150	150	0.539
151	151	0.129
152	152	0.167
153	153	0.171
154	154	0.24
155	155	0.627
156	156	3.11907e-5
157	157	0.725
158	158	0.335
159	159	0.0391
160	160	0.645
161	161	0.556
162	162	0.786
163	163	0.161
164	164	0.516
165	165	0.537
166	166	0.656
167	167	0.467
168	168	0.941
169	169	0.018
17	17	0.0579
18	18	0.331
19	19	0.203
2	2	0.695
20	20	0.769
21	21	0.813
22	22	0.357
23	23	0.0324
24	24	0.858
25	25	0.406
26	26	0.57
27	27	0.233
28	28	0.249
29	29	0.553
3	3	0.0972
30	30	0.853
31	31	0.323
32	32	0.148
33	33	0.815
34	34	0.968
35	35	0.133
36	36	0.374
37	37	0.119
38	38	0.517
39	39	0.775
4	4	0.649
40	40	0.776
41	41	0.927
42	42	0.294
43	43	0.116
44	44	0.177
45	45	0.596
46	46	0.229
47	47	0.177
48	48	0.216
49	49	0.0909
5	5	0.13
50	50	0.812
51	51	0.588
52	52	0.461
53	53	0.736
54	54	0.44
55	55	0.83
56	56	0.324
57	57	0.397
58	58	0.259
59	59	0.366
6	6	0.4
60	60	0.158
61	61	0.506
62	62	0.0603
63	63	0.152
64	64	0.469
65	65	0.146
66	66	0.276
67	67	0.713
68	68	0.279
69	69	0.56
7	7	0.379
70	70	9.4056e-4
71	71	0.339
72	72	0.465
73	73	0.218
74	74	0.446
75	75	0.0751
76	76	0.984
77	77	0.197
78	78	0.244
79	79	0.517
8	8	0.245
80	80	0.463
81	81	0.325
82	82	0.0593
83	83	0.896
84	84	0.645
85	85	0.0114
86	86	0.527
87	87	0.432
88	88	0.998
89	89	0.307
9	9	0.555
90	90	0.0389
91	91	0.216
92	92	0.0864
93	93	0.364
94	94	0.199
95	95	0.368
96	96	0.365
97	97	0.313
98	98	0.127
99	99	0.804

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10522

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011319 mouse lung- embryo E12 sample

part_of relathionship
UBERON:0000310 breast

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0002048 (lung)
0000310 (breast)
0002100 (trunk)
0000479 (tissue)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0005177 (trunk region element)
0000117 (respiratory tube)
0000171 (respiration organ)
0000464 (anatomical space)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0000065 (respiratory tract)
0000170 (pair of lungs)
0001004 (respiratory system)
0001443 (chest)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000999 (fetal tissue sample)
0000292 (embryonic day sample - mouse)
0000004 (tissue sample)
0000295 (mouse embryonic day 12 sample)
0011319 (mouse lung- embryo E12 sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0001041 (foregut)
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)
FF:0000294 (mouse embryonic day 11 sample)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008894
+|DRA_sample_Accession=CAGE@SAMD00004946
+|accession_numbers=CAGE;DRX009031;DRR009905;DRZ001330;DRZ002713;DRZ012680;DRZ014063
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002048,UBERON:0000310,UBERON:0002100,UBERON:0000479,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0005178,UBERON:0005177,UBERON:0000117,UBERON:0000171,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0000065,UBERON:0000170,UBERON:0001004,UBERON:0001443,UBERON:0002224,UBERON:0000915
 |ancestors_in_cell_lineage_facet=
@@ Line 8: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr8:123608252..123608268,+!p1@Foxf1a!1.54!49.08!Foxf1a;;chr2:180069370..180069409,-!p1@Gata5!1.52!37.71!Gata5;;chr11:85699862..85699920,+!p1@Tbx4!1.50!30.70!Tbx4;;chr10:22539932..22539956,-!p1@Tcf21!1.44!68.79!Tcf21;;chr10:119913278..119913298,-!p2@Hmga2!1.39!51.92!Hmga2;;chr9:24578720..24578735,-!p1@Tbx20!1.38!23.12!Tbx20;;chr6:52154386..52154407,-!p2@Hoxa5!1.34!26.53!Hoxa5;;chr10:119913546..119913583,-!p3@Hmga2!1.32!41.12!Hmga2;;chr6:52154414..52154462,-!p1@Hoxa5!1.30!25.96!Hoxa5;;chr12:3891810..3891829,+!p2@Dnmt3a!1.27!27.48!Dnmt3a;;chr10:119913310..119913366,-!p1@Hmga2!1.25!127.15!Hmga2;;chr11:18918434..18918489,-!p3@Meis1!1.23!25.20!Meis1;;chr14:63864056..63864102,-!p1@Gata4!1.22!26.91!Gata4;;chr12:34642510..34642530,+!p1@Twist1!1.17!43.96!Twist1;;chr11:96160426..96160443,+!p2@Hoxb6!1.17!13.64!Hoxb6;;chr8:59799772..59799789,+!p1@Hand2!1.16!38.09!Hand2;;chr6:14851440..14851497,+!p2@Foxp2!1.14!31.27!Foxp2;;chr10:119914001..119914078,-!p4@Hmga2!1.10!15.73!Hmga2;;chr11:18918406..18918431,-!p6@Meis1!1.08!14.97!Meis1;;chr11:85646303..85646329,+!p1@Tbx2!1.03!65.75!Tbx2;;chr11:85646263..85646278,+!p2@Tbx2!1.03!25.39!Tbx2;;chr10:126778916..126778974,-!p1@Gli1!1.01!21.03!Gli1;;chr11:96180045..96180059,+!p1@Hoxb4!1.01!13.07!Hoxb4;;chr12:58646974..58647003,-!p1@Foxa1!1.01!12.51!Foxa1;;chr11:96164821..96164865,+!p1@Hoxb5!1.00!9.10!Hoxb5;;chr17:26978409..26978442,-!p1@Nkx2-5!1.00!9.10!Nkx2-5;;chr13:31717548..31717596,+!p1@Foxf2!0.98!17.24!Foxf2;;chr11:96164905..96164919,+!p2@Hoxb5!0.97!8.34!Hoxb5;;chr12:28027561..28027591,-!p1@Sox11!0.96!54.95!Sox11;;chr13:72766250..72766273,+!p1@Irx2!0.96!12.70!Irx2;;chr13:99124189..99124205,+!p1@Foxd1!0.96!12.70!Foxd1;;chr10:12810631..12810649,+!p1@Plagl1!0.95!214.88!Plagl1;;chr9:71743854..71743909,-!p1@Tcf12!0.95!64.62!Tcf12;;chr13:72101161..72101177,-!p2@Irx1!0.95!11.18!Irx1;;chr12:57636220..57636236,-!p3@Nkx2-1!0.95!7.96!Nkx2-1;;chr12:3891753..3891801,+!p4@Dnmt3a!0.94!12.89!Dnmt3a;;chr12:9581262..9581282,+!p1@Osr1!0.92!91.15!Osr1;;chr11:101755669..101755686,-!p1@Meox1!0.92!13.45!Meox1;;chr16:14705961..14705978,+!p2@Snai2!0.90!34.11!Snai2;;chr12:57636240..57636256,-!p4@Nkx2-1!0.89!6.82!Nkx2-1;;chr11:96213288..96213332,+!p@chr11:96213288..96213332,+!0.88!11.56!Hoxb2;;chr2:147871627..147871641,-!p1@Foxa2!0.88!6.63!Foxa2;;chr7:52471143..52471186,+!p1@Tead2!0.85!69.16!Tead2;;chr16:14705925..14705951,+!p1@Snai2!0.85!45.10!Snai2;;chr2:104966766..104966786,+!p1@Wt1!0.85!9.85!Wt1;;chr5:120285144..120285160,+!p1@Tbx5!0.85!6.06!Tbx5;;chr17:48061584..48061601,-!p2@Foxp4!0.84!40.74!Foxp4;;chr1:170361730..170361769,-!p7@Pbx1!0.84!14.02!Pbx1;;chr13:72766279..72766296,+!p2@Irx2!0.84!9.10!Irx2;;chr11:96180069..96180089,+!p3@Hoxb4!0.84!5.87!Hoxb4;;chr1:136186574..136186592,+!p1@Myog!0.84!5.87!Myog;;chr1:170361695..170361722,-!p12@Pbx1!0.82!7.39!Pbx1;;chr2:167363692..167363710,+!p1@Snai1!0.81!72.01!Snai1;;chr11:85703483..85703508,+!p2@Tbx4!0.81!5.50!Tbx4;;chr13:15555670..15555771,+!p2@Gli3!0.80!14.40!Gli3;;chr1:170361678..170361689,-!p13@Pbx1!0.79!6.44!Pbx1;;chr6:14851403..14851422,+!p8@Foxp2!0.79!5.12!Foxp2;;chr18:11052642..11052659,+!p1@Gata6!0.77!27.10!Gata6;;chr15:102865088..102865107,+!p1@Hoxc4!0.77!6.63!Hoxc4;;chr11:96160360..96160397,+!p3@Hoxb6!0.77!4.93!Hoxb6;;chr7:17647736..17647772,-!p1@Hif3a!0.76!18.19!Hif3a;;chr8:90483433..90483457,-!p2@Zfp423!0.76!6.63!Zfp423;;chr11:96213434..96213452,+!p@chr11:96213434..96213452,+!0.76!6.44!Hoxb2;;chr9:106356211..106356242,+!p1@Pcbp4!0.74!97.40!Pcbp4;;chr12:12948633..12948651,-!p1@Mycn!0.74!47.75!Mycn;;chr7:6649134..6649167,-!p1@Zim1!0.74!26.72!Zim1;;chr14:17407549..17407575,-!p3@Rarb!0.74!7.20!Rarb;;chr9:87625971..87625992,-!p2@Tbx18!0.74!4.55!Tbx18;;chr3:66785857..66785873,-!p1@Shox2!0.74!4.55!Shox2;;chrX:45245679..45245702,-!p1@Smarca1!0.73!21.41!Smarca1;;chr11:85646341..85646352,+!p3@Tbx2!0.73!9.29!Tbx2;;chr8:123640063..123640077,+!p1@Foxc2!0.73!8.34!Foxc2;;chr13:72101178..72101203,-!p1@Irx1!0.73!7.20!Irx1;;chr3:130813736..130813752,+!p3@Lef1!0.73!6.44!Lef1;;chr15:40486883..40486903,+!p4@Zfpm2!0.73!6.06!Zfpm2;;chr6:14851250..14851277,+!p4@Foxp2!0.73!5.87!Foxp2;;chr7:108966820..108966835,+!p1@Phox2a!0.73!4.36!Phox2a;;chr7:53631837..53631850,+!p1@Myod1!0.73!4.36!Myod1;;chr11:23978291..23978323,+!p7@Bcl11a!0.73!4.36!Bcl11a;;chr10:119913266..119913277,-!p6@Hmga2!0.73!4.36!Hmga2;;chr14:22807083..22807104,-!p1@Zfp503!0.72!83.94!Zfp503;;chr15:102865131..102865151,+!p2@Hoxc4!0.72!4.93!Hoxc4;;chr6:52158644..52158677,-!p2@Hoxa6!0.71!4.17!Hoxa6;;chr2:104966874..104966907,+!p2@Wt1!0.71!4.17!Wt1;;chr14:22807107..22807119,-!p2@Zfp503!0.70!19.71!Zfp503;;chr10:119913792..119913820,-!p5@Hmga2!0.70!7.39!Hmga2;;chr2:30700788..30700824,+!p2@Prrx2!0.70!6.44!Prrx2;;chr8:87425854..87425891,+!p1@Klf1!0.70!3.98!Klf1;;chr17:37139472..37139514,+!p1@Zfp57!0.69!30.13!Zfp57;;chr17:35031460..35031518,+!p1@Zbtb12!0.69!22.36!Zbtb12;;chr11:74981654..74981658,-!p1@Hic1!0.69!17.24!Hic1;;chr14:17407878..17407926,-!p1@Rarb!0.69!9.47!Rarb;;chr14:5644380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@@ Line 42: / Line 44: @@
 |is_a=EFO:0002091;;FF:0011319
 |is_obsolete=
-|library_ids=CNhs10522
+|library_id=CNhs10522
+|library_id_phase_based=2:CNhs10522
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;354
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;354
+|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/lung%252c%2520embryo%2520E12.CNhs10522.354-16G2.mm10.nobarcode.bam
+|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/lung%252c%2520embryo%2520E12.CNhs10522.354-16G2.mm10.nobarcode.ctss.bed.gz
+|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/lung%252c%2520embryo%2520E12.CNhs10522.354-16G2.mm9.nobarcode.bam
+|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/lung%252c%2520embryo%2520E12.CNhs10522.354-16G2.mm9.ctss.bed.gz
+|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/lung%252c%2520embryo%2520E12.CNhs10522.354-16G2.mm9.nobarcode.rdna.fa.gz
 |name=lung, embryo E12
 |namespace=FANTOM5
@@ Line 48: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10522,LSID649,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
 |repeat_enrich_byfamily=-0.0480161679978621,0,0,0,0,0,-0.175836219120618,0,0,0,0,0.0552196162884936,0,0,0,0,0,0,-0.0523344941975395,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.418863935638996,0,0,0,0,0,-0.171642070125137,0.0197304458223997,-0.178099132349739,0.0588774684979744,0.0968231963864864,0,0,0,0,0,0,0,0,0,0,0.0753613107413788,0,0.223462342755979,0.0753613107413788,0,0,0,-0.0428469550828748,0,0,0,0,0,-0.0200278201667805,0.0191433925766993,0.131376847548337,0.00108794637383595,0,0,0,0,0.0753613107413788,0,0.00067952821583006,-0.118143945456838,-0.163679750110377,-0.00347028409852859,0,0,0,0,0,0,-0.0326378624110613,-0.0255797093871855,0.0440532576404373,0,0,0,0,0
@@ Line 85: / Line 97: @@
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 |xref=
-}} {{DRAAccessionNumbers
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:354-16G2;search_select_hide=table117:354-16G2
-|DRA_sample_Accession=CAGE@DRS008894
-|accession_numbers=DRX009031;DRR009905;DRZ001330;DRZ002713;CAGE
-|library_id=CNhs10522
 }}

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From FANTOM5_SSTAR

Latest revision as of 19:10, 4 June 2020

CNhs10522

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0