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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS007681
|DRA_sample_Accession=CAGE@SAMD00005506
|accession_numbers=CAGE;DRX007786;DRR008658;DRZ000083;DRZ001468;DRZ011433;DRZ012818
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001737,UBERON:0000064,UBERON:0004119,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000072,UBERON:0010317,UBERON:0000065,UBERON:0001004,UBERON:0001557
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001737,UBERON:0000064,UBERON:0004119,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000072,UBERON:0010317,UBERON:0000065,UBERON:0001004,UBERON:0001557
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr6:10415276..10415341,-!p2@TFAP2A!1.69!57.52!TFAP2A;;chr6:126240380..126240430,+!p2@NCOA7!1.54!85.41!NCOA7;;chr6:10415484..10415508,-!p3@TFAP2A!1.53!32.90!TFAP2A;;chr2:238592039..238592054,+!p4@LRRFIP1!1.49!29.63!LRRFIP1;;chr5:134369905..134369972,-!p1@PITX1!1.47!42.70!PITX1;;chr6:1312325..1312340,+!p1@FOXQ1!1.46!45.10!FOXQ1;;chr6:126240442..126240459,+!p4@NCOA7!1.39!29.85!NCOA7;;chr6:10412600..10412637,-!p1@TFAP2A!1.35!35.08!TFAP2A;;chr1:201979743..201979762,+!p1@ELF3!1.30!18.96!ELF3;;chr6:126240463..126240489,+!p6@NCOA7!1.29!20.70!NCOA7;;chr5:134369879..134369898,-!p2@PITX1!1.26!17.21!PITX1;;chr5:170736243..170736279,+!p1@TLX3!1.24!16.56!TLX3;;chr6:1389789..1389821,+!p1@FOXF2!1.22!21.57!FOXF2;;chr6:126240356..126240379,+!p7@NCOA7!1.20!18.30!NCOA7;;chr1:201979703..201979721,+!p2@ELF3!1.16!13.51!ELF3;;chr12:54380036..54380091,+!p4@HOXC10!1.16!13.51!HOXC10;;chr22:19748231..19748317,+!p1@TBX1!1.13!12.64!TBX1;;chr18:55102598..55102623,+!p1@ONECUT2!1.09!11.33!ONECUT2;;chr18:55102628..55102646,+!p2@ONECUT2!1.08!10.89!ONECUT2;;chrX:131624056..131624069,-!p2@MBNL3!1.07!14.60!MBNL3;;chr1:44513995..44514031,+!p1@KLF17!1.06!10.46!KLF17;;chr9:100615499..100615519,+!p1@FOXE1!1.04!10.02!FOXE1;;chr12:54380404..54380433,+!p3@HOXC10!1.02!9.59!HOXC10;;chr12:54332608..54332636,+!p1@HOXC13!1.02!9.37!HOXC13;;chr7:101917447..101917479,+!p4@CUX1!0.98!8.50!CUX1;;chr20:6748325..6748352,+!p1@BMP2!0.96!11.77!BMP2;;chr17:46682321..46682362,-!p1@HOXB6!0.96!8.06!HOXB6;;chr10:104155659..104155676,+!p4@NFKB2!0.95!10.02!NFKB2;;chr6:10412576..10412599,-!p5@TFAP2A!0.95!7.84!TFAP2A;;chr17:46687959..46688007,-!p2@HOXB7!0.94!10.68!HOXB7;;chr5:170736216..170736238,+!p2@TLX3!0.94!7.63!TLX3;;chr12:54378923..54378966,+!p1@HOXC10!0.94!7.63!HOXC10;;chr3:69915385..69915438,+!p3@MITF!0.94!7.63!MITF;;chr13:73633131..73633149,+!p1@KLF5!0.91!80.40!KLF5;;chr6:31126291..31126399,+!p1@TCF19!0.90!69.94!TCF19;;chr16:29818199..29818216,+!p11@MAZ!0.90!11.77!MAZ;;chr6:10412392..10412409,-!p4@TFAP2A!0.88!7.63!TFAP2A;;chr10:28034739..28034756,-!p1@MKX!0.88!6.54!MKX;;chr11:34663913..34663945,+!p6@EHF!0.88!6.54!EHF;;chr7:27224842..27224872,-!p1@HOXA11!0.84!5.88!HOXA11;;chr20:42295745..42295765,+!p1@MYBL2!0.81!96.74!MYBL2;;chr21:38071430..38071456,+!p1@SIM2!0.79!5.23!SIM2;;chr7:27239703..27239715,-!p1@HOXA13!0.79!5.23!HOXA13;;chr8:128748308..128748324,+!p2@MYC!0.78!153.82!MYC;;chr17:17726907..17726958,-!p2@SREBF1!0.78!34.21!SREBF1;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.78!5.01!SEBOX;;chr6:10415263..10415274,-!p8@TFAP2A!0.78!5.01!TFAP2A;;chr7:101917482..101917507,+!p6@CUX1!0.78!5.01!CUX1;;chr12:3068544..3068597,+!p1@TEAD4!0.77!31.81!TEAD4;;chr10:51572408..51572454,+!p3@NCOA4!0.77!30.94!NCOA4;;chr12:80084737..80084763,-!p3@PAWR!0.76!19.17!PAWR;;chr5:321810..321877,+!p1@AHRR!0.76!16.56!AHRR;;chr7:101917407..101917443,+!p3@CUX1!0.76!4.79!CUX1;;chrX:70503529..70503549,+!p2@NONO!0.75!27.02!NONO;;chr2:178129853..178129860,-!p14@NFE2L2!0.75!4.58!NFE2L2;;chr1:8938709..8938720,-!p3@ENO1!0.74!243.81!ENO1;;chr3:128206762..128206781,-!p2@GATA2!0.74!30.72!GATA2;;chr12:7079780..7079791,-!p2@PHB2!0.74!25.71!PHB2;;chrX:131623044..131623089,-!p1@MBNL3!0.74!20.48!MBNL3;;chr17:7492684..7492778,-!p2@SOX15!0.74!10.24!SOX15;;chr20:42295713..42295738,+!p2@MYBL2!0.73!28.76!MYBL2;;chr12:54379029..54379057,+!p2@HOXC10!0.73!4.36!HOXC10;;chr14:37131058..37131139,+!p1@PAX9!0.73!4.36!PAX9;;chr2:45236540..45236577,-!p1@SIX2!0.73!4.36!SIX2;;chr6:1389989..1390019,+!p2@FOXF2!0.73!4.36!FOXF2;;chr2:172967621..172967637,-!p1@DLX2!0.71!11.98!DLX2;;chrX:131622958..131622978,-!p3@MBNL3!0.71!5.45!MBNL3;;chr3:69915369..69915381,+!p4@MITF!0.71!4.14!MITF;;chr11:34664014..34664045,+!p4@EHF!0.71!4.14!EHF;;chr17:46806067..46806097,-!p1@HOXB13!0.71!4.14!HOXB13;;chr1:23885981..23886002,-!p1@ID3!0.69!777.61!ID3;;chr12:52445218..52445237,+!p1@NR4A1!0.69!56.87!NR4A1;;chr9:99180617..99180658,-!p1@ZNF367!0.69!9.37!ZNF367;;chr15:67418119..67418162,+!p5@SMAD3!0.69!4.36!SMAD3;;chr1:45805872..45805900,+!p2@TOE1!0.68!10.02!TOE1;;chr19:45908292..45908374,-!p1@PPP1R13L!0.67!37.91!PPP1R13L;;chr16:29818160..29818188,+!p6@MAZ!0.67!19.39!MAZ;;chr2:46524897..46524911,+!p2@EPAS1!0.67!11.33!EPAS1;;chr22:42229210..42229229,+!p3@SREBF2!0.67!9.59!SREBF2;;chr3:138665969..138665993,-!p2@FOXL2!0.67!3.70!FOXL2;;chr19:12348371..12348386,-!p5@ZNF44!0.67!3.70!ZNF44;;chr1:151804244..151804310,-!p1@RORC!0.67!3.70!RORC;;chr8:55370487..55370503,+!p1@SOX17!0.67!3.70!SOX17;;chr12:2986275..2986363,-!p1@FOXM1!0.66!42.05!FOXM1;;chr17:41277372..41277418,-!p1@BRCA1!0.66!14.82!BRCA1;;chr8:67525443..67525459,-!p2@MYBL1!0.66!5.66!MYBL1;;chr16:54964740..54964789,+!p1@IRX5!0.66!5.45!IRX5;;chr3:141087393..141087426,+!p3@ZBTB38!0.65!15.91!ZBTB38;;chr1:935398..935465,-!p2@HES4!0.65!7.84!HES4;;chr3:12330560..12330579,+!p1@PPARG!0.65!4.14!PPARG;;chr3:138665937..138665968,-!p1@FOXL2!0.65!3.49!FOXL2;;chr17:46687935..46687950,-!p3@HOXB7!0.65!3.49!HOXB7;;chr7:27224795..27224840,-!p2@HOXA11!0.65!3.49!HOXA11;;chrX:131623026..13162303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Line 39: Line 41:
|fonse_treatment_closure=FF:0000625,FF:0000632,FF:0000638,FF:0011133,FF:11891-125E1
|fonse_treatment_closure=FF:0000625,FF:0000632,FF:0000638,FF:0011133,FF:11891-125E1
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Line 62: Line 75:
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|sample_age=56
Line 87: Line 100:
|top_motifs=ESRRA:1.81748395725;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.79285064137;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.61347357106;HES1:1.61100618428;E2F1..5:1.57919546816;PPARG:1.50618086821;FOXM1:1.47030653359;ELK1,4_GABP{A,B1}:1.21476733065;HIF1A:1.18095701727;NR5A1,2:1.1629818906;FOXQ1:1.16225315738;bHLH_family:0.974236031262;HOX{A6,A7,B6,B7}:0.868978044402;NR6A1:0.850773417963;NRF1:0.84814066537;PAX1,9:0.833979207962;YY1:0.769191752183;NKX3-2:0.759650661298;MYB:0.698228942488;NFY{A,B,C}:0.653945843184;ZNF143:0.650673118898;HNF4A_NR2F1,2:0.608207086305;SNAI1..3:0.603558290676;FOXN1:0.582658290354;PAX8:0.576062360257;GCM1,2:0.541875890336;PAX5:0.536303357533;POU1F1:0.53387260431;TEAD1:0.529519508713;NKX3-1:0.496538768465;TFDP1:0.462983284401;ZNF148:0.438930552822;IRF7:0.409793904686;NFE2L1:0.395535777728;ZEB1:0.379512486637;TBX4,5:0.379421589502;FOXD3:0.364527725829;MYOD1:0.355600789306;ARID5B:0.349514193514;VSX1,2:0.344665490519;HOX{A5,B5}:0.319400404721;LEF1_TCF7_TCF7L1,2:0.318934916543;RXR{A,B,G}:0.317269870726;FOXL1:0.305979507818;TP53:0.279442892833;BREu{core}:0.269953657765;EP300:0.269865428494;UFEwm:0.263191776701;IKZF1:0.209584114365;MYBL2:0.185157853894;GZF1:0.166361705417;CUX2:0.165893400371;CREB1:0.15743277155;GTF2A1,2:0.151918313738;PAX3,7:0.124577552893;RORA:0.122668909648;SOX{8,9,10}:0.0781176938541;ZNF423:0.0763368302251;MTF1:0.0750267151765;TEF:0.0616113036675;GFI1:0.0454593073714;HOXA9_MEIS1:0.0314343335654;FOX{I1,J2}:0.0110723580465;NFE2:0.0103248362435;PAX2:0.00305482674719;HLF:0.00203188199769;HSF1,2:-0.000919897107634;ALX4:-0.00180239809222;HNF1A:-0.00490371090153;NFE2L2:-0.00617331063664;GFI1B:-0.0063356840373;RFX2..5_RFXANK_RFXAP:-0.00911209057487;ZNF384:-0.0154689514627;PDX1:-0.0211724061678;BACH2:-0.0228586495835;LHX3,4:-0.0257362645379;FOS_FOS{B,L1}_JUN{B,D}:-0.0413996693145;EN1,2:-0.0467013258183;OCT4_SOX2{dimer}:-0.0501563837985;FOX{F1,F2,J1}:-0.0603533453311;ZBTB16:-0.0709638778629;NKX6-1,2:-0.0884538460921;AHR_ARNT_ARNT2:-0.0895445124317;ONECUT1,2:-0.0914988610864;ATF5_CREB3:-0.0962317161561;CEBPA,B_DDIT3:-0.0980383077389;POU2F1..3:-0.105782021555;NR1H4:-0.120005138553;PITX1..3:-0.153314508149;HOX{A4,D4}:-0.165118025245;TFAP2{A,C}:-0.167077002073;T:-0.178757516687;NR3C1:-0.180857223505;NANOG:-0.187257207873;ZBTB6:-0.187608706661;TBP:-0.189584583957;PRRX1,2:-0.193096864906;MEF2{A,B,C,D}:-0.209500134823;TLX1..3_NFIC{dimer}:-0.218912974493;LMO2:-0.219274870723;CDC5L:-0.228346264509;POU3F1..4:-0.231504248064;HAND1,2:-0.237849337423;EBF1:-0.243963356607;IKZF2:-0.26833977539;STAT2,4,6:-0.272770351576;TFCP2:-0.295924630694;ELF1,2,4:-0.29774647453;ATF4:-0.298524468625;NFKB1_REL_RELA:-0.299466159717;CRX:-0.300955951526;RXRA_VDR{dimer}:-0.304977723388;STAT5{A,B}:-0.312182413129;HBP1_HMGB_SSRP1_UBTF:-0.324588826705;ZFP161:-0.332906492734;CDX1,2,4:-0.333329029344;PBX1:-0.336194621676;ATF6:-0.356743975762;FOSL2:-0.366746661244;NFIL3:-0.376822486107;TFAP2B:-0.381514840133;HIC1:-0.385902628388;KLF4:-0.40234258545;JUN:-0.414977925481;BPTF:-0.437961469326;ESR1:-0.446629032336;IRF1,2:-0.449102578657;GATA6:-0.454911149459;GTF2I:-0.46141937904;DBP:-0.471440469203;SPIB:-0.473782738841;SP1:-0.49445857634;SREBF1,2:-0.500869714054;EVI1:-0.506808205993;NKX2-1,4:-0.508807050202;RFX1:-0.514312246602;GLI1..3:-0.532308270677;HMGA1,2:-0.549733469299;POU5F1:-0.55881919379;PAX4:-0.559289484949;FOXP3:-0.570861639327;SRF:-0.590833935563;ADNP_IRX_SIX_ZHX:-0.600207247757;SOX5:-0.609288366114;NKX2-2,8:-0.611836055675;PAX6:-0.628611802172;SOX17:-0.63039012522;EGR1..3:-0.632584065912;SPI1:-0.633513870442;REST:-0.639027852901;MAFB:-0.642594315061;POU6F1:-0.647921016725;NHLH1,2:-0.65006448073;RBPJ:-0.659003068497;ZIC1..3:-0.671679146648;RUNX1..3:-0.674372740461;MED-1{core}:-0.680420031166;FOXP1:-0.680532512746;SOX2:-0.697027513228;MTE{core}:-0.699214313347;FOXA2:-0.709995200098;ETS1,2:-0.720704886792;TFAP4:-0.726627392024;AIRE:-0.726921920329;ALX1:-0.733859956843;AR:-0.774396414708;ZNF238:-0.7796695623;NFATC1..3:-0.795221064959;NKX2-3_NKX2-5:-0.82284312059;TAL1_TCF{3,4,12}:-0.843707009563;XCPE1{core}:-0.847372257481;MAZ:-0.848104290621;ATF2:-0.893845521577;XBP1:-0.916479033755;FOX{D1,D2}:-0.949449617094;STAT1,3:-0.980527158714;MYFfamily:-0.986307935911;RREB1:-0.996912014516;NFIX:-0.999294865787;DMAP1_NCOR{1,2}_SMARC:-1.02335465848;TOPORS:-1.02474396718;GATA4:-1.02822929682;SMAD1..7,9:-1.0400436417;FOXO1,3,4:-1.05844864851;PRDM1:-1.15365297043;TLX2:-1.2103409419;MZF1:-1.27234322531;TGIF1:-1.30903376119;PATZ1:-1.33862185655;HMX1:-1.43032143689;NANOG{mouse}:-1.83559204556;SPZ1:-1.89297119813
|top_motifs=ESRRA:1.81748395725;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.79285064137;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.61347357106;HES1:1.61100618428;E2F1..5:1.57919546816;PPARG:1.50618086821;FOXM1:1.47030653359;ELK1,4_GABP{A,B1}:1.21476733065;HIF1A:1.18095701727;NR5A1,2:1.1629818906;FOXQ1:1.16225315738;bHLH_family:0.974236031262;HOX{A6,A7,B6,B7}:0.868978044402;NR6A1:0.850773417963;NRF1:0.84814066537;PAX1,9:0.833979207962;YY1:0.769191752183;NKX3-2:0.759650661298;MYB:0.698228942488;NFY{A,B,C}:0.653945843184;ZNF143:0.650673118898;HNF4A_NR2F1,2:0.608207086305;SNAI1..3:0.603558290676;FOXN1:0.582658290354;PAX8:0.576062360257;GCM1,2:0.541875890336;PAX5:0.536303357533;POU1F1:0.53387260431;TEAD1:0.529519508713;NKX3-1:0.496538768465;TFDP1:0.462983284401;ZNF148:0.438930552822;IRF7:0.409793904686;NFE2L1:0.395535777728;ZEB1:0.379512486637;TBX4,5:0.379421589502;FOXD3:0.364527725829;MYOD1:0.355600789306;ARID5B:0.349514193514;VSX1,2:0.344665490519;HOX{A5,B5}:0.319400404721;LEF1_TCF7_TCF7L1,2:0.318934916543;RXR{A,B,G}:0.317269870726;FOXL1:0.305979507818;TP53:0.279442892833;BREu{core}:0.269953657765;EP300:0.269865428494;UFEwm:0.263191776701;IKZF1:0.209584114365;MYBL2:0.185157853894;GZF1:0.166361705417;CUX2:0.165893400371;CREB1:0.15743277155;GTF2A1,2:0.151918313738;PAX3,7:0.124577552893;RORA:0.122668909648;SOX{8,9,10}:0.0781176938541;ZNF423:0.0763368302251;MTF1:0.0750267151765;TEF:0.0616113036675;GFI1:0.0454593073714;HOXA9_MEIS1:0.0314343335654;FOX{I1,J2}:0.0110723580465;NFE2:0.0103248362435;PAX2:0.00305482674719;HLF:0.00203188199769;HSF1,2:-0.000919897107634;ALX4:-0.00180239809222;HNF1A:-0.00490371090153;NFE2L2:-0.00617331063664;GFI1B:-0.0063356840373;RFX2..5_RFXANK_RFXAP:-0.00911209057487;ZNF384:-0.0154689514627;PDX1:-0.0211724061678;BACH2:-0.0228586495835;LHX3,4:-0.0257362645379;FOS_FOS{B,L1}_JUN{B,D}:-0.0413996693145;EN1,2:-0.0467013258183;OCT4_SOX2{dimer}:-0.0501563837985;FOX{F1,F2,J1}:-0.0603533453311;ZBTB16:-0.0709638778629;NKX6-1,2:-0.0884538460921;AHR_ARNT_ARNT2:-0.0895445124317;ONECUT1,2:-0.0914988610864;ATF5_CREB3:-0.0962317161561;CEBPA,B_DDIT3:-0.0980383077389;POU2F1..3:-0.105782021555;NR1H4:-0.120005138553;PITX1..3:-0.153314508149;HOX{A4,D4}:-0.165118025245;TFAP2{A,C}:-0.167077002073;T:-0.178757516687;NR3C1:-0.180857223505;NANOG:-0.187257207873;ZBTB6:-0.187608706661;TBP:-0.189584583957;PRRX1,2:-0.193096864906;MEF2{A,B,C,D}:-0.209500134823;TLX1..3_NFIC{dimer}:-0.218912974493;LMO2:-0.219274870723;CDC5L:-0.228346264509;POU3F1..4:-0.231504248064;HAND1,2:-0.237849337423;EBF1:-0.243963356607;IKZF2:-0.26833977539;STAT2,4,6:-0.272770351576;TFCP2:-0.295924630694;ELF1,2,4:-0.29774647453;ATF4:-0.298524468625;NFKB1_REL_RELA:-0.299466159717;CRX:-0.300955951526;RXRA_VDR{dimer}:-0.304977723388;STAT5{A,B}:-0.312182413129;HBP1_HMGB_SSRP1_UBTF:-0.324588826705;ZFP161:-0.332906492734;CDX1,2,4:-0.333329029344;PBX1:-0.336194621676;ATF6:-0.356743975762;FOSL2:-0.366746661244;NFIL3:-0.376822486107;TFAP2B:-0.381514840133;HIC1:-0.385902628388;KLF4:-0.40234258545;JUN:-0.414977925481;BPTF:-0.437961469326;ESR1:-0.446629032336;IRF1,2:-0.449102578657;GATA6:-0.454911149459;GTF2I:-0.46141937904;DBP:-0.471440469203;SPIB:-0.473782738841;SP1:-0.49445857634;SREBF1,2:-0.500869714054;EVI1:-0.506808205993;NKX2-1,4:-0.508807050202;RFX1:-0.514312246602;GLI1..3:-0.532308270677;HMGA1,2:-0.549733469299;POU5F1:-0.55881919379;PAX4:-0.559289484949;FOXP3:-0.570861639327;SRF:-0.590833935563;ADNP_IRX_SIX_ZHX:-0.600207247757;SOX5:-0.609288366114;NKX2-2,8:-0.611836055675;PAX6:-0.628611802172;SOX17:-0.63039012522;EGR1..3:-0.632584065912;SPI1:-0.633513870442;REST:-0.639027852901;MAFB:-0.642594315061;POU6F1:-0.647921016725;NHLH1,2:-0.65006448073;RBPJ:-0.659003068497;ZIC1..3:-0.671679146648;RUNX1..3:-0.674372740461;MED-1{core}:-0.680420031166;FOXP1:-0.680532512746;SOX2:-0.697027513228;MTE{core}:-0.699214313347;FOXA2:-0.709995200098;ETS1,2:-0.720704886792;TFAP4:-0.726627392024;AIRE:-0.726921920329;ALX1:-0.733859956843;AR:-0.774396414708;ZNF238:-0.7796695623;NFATC1..3:-0.795221064959;NKX2-3_NKX2-5:-0.82284312059;TAL1_TCF{3,4,12}:-0.843707009563;XCPE1{core}:-0.847372257481;MAZ:-0.848104290621;ATF2:-0.893845521577;XBP1:-0.916479033755;FOX{D1,D2}:-0.949449617094;STAT1,3:-0.980527158714;MYFfamily:-0.986307935911;RREB1:-0.996912014516;NFIX:-0.999294865787;DMAP1_NCOR{1,2}_SMARC:-1.02335465848;TOPORS:-1.02474396718;GATA4:-1.02822929682;SMAD1..7,9:-1.0400436417;FOXO1,3,4:-1.05844864851;PRDM1:-1.15365297043;TLX2:-1.2103409419;MZF1:-1.27234322531;TGIF1:-1.30903376119;PATZ1:-1.33862185655;HMX1:-1.43032143689;NANOG{mouse}:-1.83559204556;SPZ1:-1.89297119813
|xref=
|xref=
}} {{DRAAccessionNumbers
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11891-125E1;search_select_hide=table117:FF:11891-125E1
|DRA_sample_Accession=CAGE@DRS007681
|accession_numbers=DRX007786;DRR008658;DRZ000083;DRZ001468;CAGE
|library_id=CNhs13496
}}
}}

Latest revision as of 18:27, 4 June 2020

Name:Hep-2 cells treated with Streptococci strain 5448, biol_rep2
Species:Human (Homo sapiens)
Library ID:CNhs13496
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueNA
dev stageNA
sexmale
age56
cell typeunclassifiable
cell lineHep-2
companyNA
collaborationChristine Wells (University of Queensland)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1b
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005506
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13496 CAGE DRX007786 DRR008658
Accession ID Hg19

Library idBAMCTSS
CNhs13496 DRZ000083 DRZ001468
Accession ID Hg38

Library idBAMCTSS
CNhs13496 DRZ011433 DRZ012818
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0359
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0.779
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.469
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.0856
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0.0428
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0176
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.183
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.213
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.00614
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0151
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.0856
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.711
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.359
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory-0.0163
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.809
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.476
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.525
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0.0856
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13496

Jaspar motifP-value
MA0002.20.11
MA0003.10.908
MA0004.10.0913
MA0006.10.455
MA0007.10.266
MA0009.10.631
MA0014.10.734
MA0017.10.417
MA0018.20.884
MA0019.10.66
MA0024.16.01466e-9
MA0025.10.209
MA0027.10.908
MA0028.13.86065e-6
MA0029.10.79
MA0030.10.326
MA0031.10.216
MA0035.20.326
MA0038.10.881
MA0039.20.00919
MA0040.10.559
MA0041.10.261
MA0042.10.332
MA0043.10.276
MA0046.10.256
MA0047.20.708
MA0048.10.0744
MA0050.10.0259
MA0051.10.889
MA0052.10.0066
MA0055.11.04409e-4
MA0057.10.197
MA0058.10.0493
MA0059.10.00923
MA0060.10.0378
MA0061.10.0329
MA0062.20.00583
MA0065.20.0246
MA0066.10.634
MA0067.10.317
MA0068.18.72918e-4
MA0069.10.48
MA0070.10.471
MA0071.10.0412
MA0072.10.429
MA0073.10.265
MA0074.10.669
MA0076.15.90352e-5
MA0077.10.611
MA0078.10.524
MA0079.20.433
MA0080.29.47497e-8
MA0081.10.37
MA0083.10.0278
MA0084.10.168
MA0087.10.662
MA0088.10.0503
MA0090.10.00478
MA0091.10.694
MA0092.10.705
MA0093.10.0538
MA0099.20.162
MA0100.10.26
MA0101.10.235
MA0102.20.412
MA0103.10.0189
MA0104.24.93283e-4
MA0105.10.331
MA0106.10.716
MA0107.10.0787
MA0108.20.471
MA0111.10.81
MA0112.20.0686
MA0113.10.754
MA0114.10.0286
MA0115.10.0456
MA0116.10.738
MA0117.10.923
MA0119.10.917
MA0122.10.928
MA0124.10.883
MA0125.10.218
MA0131.10.418
MA0135.10.771
MA0136.10.00203
MA0137.20.0404
MA0138.20.0571
MA0139.10.842
MA0140.10.875
MA0141.10.00265
MA0142.10.612
MA0143.10.141
MA0144.10.445
MA0145.10.709
MA0146.10.258
MA0147.12.36108e-4
MA0148.10.217
MA0149.10.0311
MA0150.10.633
MA0152.10.358
MA0153.10.00684
MA0154.10.449
MA0155.10.232
MA0156.10.153
MA0157.10.21
MA0159.10.0983
MA0160.10.0149
MA0162.10.217
MA0163.10.397
MA0164.10.389
MA0258.10.807
MA0259.10.0143



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13496

Novel motifP-value
10.117
100.117
1000.035
1010.176
1020.686
1030.784
1040.838
1050.245
1060.013
1070.182
1080.537
1096.7025e-4
110.84
1100.333
1110.517
1120.232
1130.00269
1140.774
1150.837
1160.421
1170.263
1180.227
1190.995
120.546
1200.0601
1210.318
1220.132
1230.161
1240.842
1250.736
1260.799
1270.112
1281.14153e-4
1290.472
137.60177e-5
1300.319
1310.473
1320.379
1330.134
1340.851
1350.192
1360.00261
1370.225
1380.79
1390.0428
140.439
1400.184
1410.537
1420.673
1430.261
1440.356
1450.149
1460.962
1470.624
1480.55
1490.542
150.507
1500.717
1510.736
1520.771
1530.525
1540.339
1550.632
1560.0379
1570.0843
1580.138
1590.147
160.859
1600.375
1610.529
1620.657
1630.18
1640.0251
1650.848
1660.0349
1670.295
1680.27
1690.327
170.818
180.177
190.755
20.535
200.141
210.634
220.935
230.00734
240.782
250.186
260.738
270.964
280.815
290.0336
30.458
300.557
310.527
320.0429
330.164
340.222
350.607
360.113
370.462
380.694
390.934
40.269
400.00964
410.197
420.978
430.407
440.063
450.191
460.468
470.403
480.424
490.213
50.235
500.906
510.593
520.318
530.0743
540.419
550.0375
560.977
570.538
580.945
590.904
60.956
600.497
610.0817
620.737
630.678
640.807
650.497
660.489
670.218
680.561
690.894
70.0112
700.252
710.0641
720.936
730.372
740.0698
750.188
760.25
770.759
780.315
790.552
80.118
800.0785
810.243
820.0469
830.751
840.274
850.0366
860.665
870.00414
880.82
890.764
90.54
900.0107
910.0451
920.118
930.234
940.328
950.0118
960.366
970.793
980.869
990.613



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13496


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001737 (larynx)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000072 (segment of respiratory tract)
0010317 (germ layer / neural crest derived structure)
0000065 (respiratory tract)
0001004 (respiratory system)
0001557 (upper respiratory tract)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000632 (group A streptococci treatment sample)
0104978 (HEp-2 cell sample)
0000638 (Streptococcus strain 5448 treatment sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0011133 (human Hep-2 cells treated with Streptococci strain 5448 sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

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