FF:11230-116C6: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@ | |DRA_sample_Accession=CAGE@SAMD00005732 | ||
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005732 | |||
|accession_numbers=CAGE;DRX008370;DRR009242;DRZ000667;DRZ002052;DRZ012017;DRZ013402 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037156;DRR041522;DRZ007164 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000623 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000623 | ||
Line 8: | Line 11: | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr1:25256756..25256774,-!p1@RUNX3!2.43!482.92!RUNX3;;chr2:192015701..192015743,-!p1@STAT4!2.27!250.43!STAT4;;chr17:45810594..45810608,+!p1@TBX21!2.15!139.89!TBX21;;chr2:157189180..157189290,-!p1@NR4A2!1.94!422.63!NR4A2;;chr19:45971246..45971265,+!p1@FOSB!1.90!1377.44!FOSB;;chr2:68592406..68592424,+!p1@PLEK!1.89!76.64!PLEK;;chr19:54041669..54041697,+!p2@ZNF331!1.86!71.52!ZNF331;;chr1:26697243..26697258,-!p1@ZNF683!1.85!69.35!ZNF683;;chr19:54058073..54058088,+!p1@ZNF331!1.84!68.57!ZNF331;;chr9:117150254..117150271,-!p1@AKNA!1.82!170.83!AKNA;;chr2:61108878..61108891,+!p5@REL!1.81!63.64!REL;;chr7:50343634..50343717,+!p2@IKZF1!1.81!63.05!IKZF1;;chr6:106546808..106546833,+!p3@PRDM1!1.78!73.49!PRDM1;;chr2:192015677..192015691,-!p3@STAT4!1.78!59.11!STAT4;;chr20:50159198..50159299,-!p1@NFATC2!1.77!82.56!NFATC2;;chr3:63953435..63953499,+!p1@ATXN7!1.75!54.97!ATXN7;;chr10:35484053..35484076,+!p1@CREM!1.74!131.03!CREM;;chr10:8096772..8096787,+!p2@GATA3!1.72!60.49!GATA3;;chr15:60884706..60884743,-!p1@RORA!1.71!249.44!RORA;;chr2:145271342..145271377,-!p5@ZEB2!1.68!46.70!ZEB2;;chr14:75745523..75745537,+!p1@FOS!1.67!5105.66!FOS;;chr2:192015750..192015793,-!p2@STAT4!1.67!60.88!STAT4;;chr20:56195474..56195506,-!p1@ZBP1!1.66!44.33!ZBP1;;chr10:8096631..8096660,+!p1@GATA3!1.65!53.00!GATA3;;chr3:39195075..39195088,-!p1@CSRNP1!1.61!238.80!CSRNP1;;chr17:38020392..38020477,-!p1@IKZF3!1.61!39.80!IKZF3;;chr5:133451294..133451310,+!p2@TCF7!1.61!39.80!TCF7;;chr5:133450365..133450444,+!p1@TCF7!1.58!163.93!TCF7;;chr14:64971288..64971316,-!p2@ZBTB25!1.58!110.53!ZBTB25;;chr9:3525727..3525828,-!p2@RFX3!1.56!88.27!RFX3;;chr16:85932760..85932775,+!p1@IRF8!1.56!35.47!IRF8;;chr2:231090433..231090469,+!p1@SP140!1.56!35.47!SP140;;chr9:102584262..102584276,+!p1@NR4A3!1.55!75.86!NR4A3;;chr8:67525443..67525459,-!p2@MYBL1!1.54!49.85!MYBL1;;chrY:21906594..21906622,-!p1@KDM5D!1.54!33.69!KDM5D;;chr6:391743..391759,+!p1@IRF4!1.53!32.51!IRF4;;chr2:145277640..145277771,-!p1@ZEB2!1.51!403.52!ZEB2;;chr12:72056800..72056834,+!p1@THAP2!1.51!41.77!THAP2;;chr1:25291475..25291511,-!p2@RUNX3!1.51!31.13!RUNX3;;chr8:123793988..123794016,+!p1@ZHX2!1.50!52.80!ZHX2;;chr1:26697189..26697205,-!p2@ZNF683!1.49!29.95!ZNF683;;chr2:231090471..231090504,+!p2@SP140!1.49!29.75!SP140;;chr1:59249688..59249703,-!p3@JUN!1.48!168.46!JUN;;chr17:37934365..37934387,-!p2@IKZF3!1.47!28.77!IKZF3;;chr1:59249707..59249727,-!p1@JUN!1.46!1123.86!JUN;;chr8:81397820..81397836,+!p2@ZBTB10!1.46!34.48!ZBTB10;;chr4:57522166..57522260,-!p2@HOPX!1.45!30.93!HOPX;;chr5:131826457..131826514,-!p1@IRF1!1.44!998.75!IRF1;;chr19:16435625..16435682,+!p1@KLF2!1.42!774.53!KLF2;;chr10:35484090..35484104,+!p6@CREM!1.41!24.63!CREM;;chr6:106546834..106546850,+!p4@PRDM1!1.40!23.84!PRDM1;;chr7:104654690..104654704,+!p2@MLL5!1.38!45.12!MLL5;;chr8:123793252..123793266,+!p10@ZHX2!1.38!23.25!ZHX2;;chr21:36421347..36421380,-!p8@RUNX1!1.38!23.25!RUNX1;;chrX:106960285..106960299,-!p1@TSC22D3!1.37!585.18!TSC22D3;;chr8:81397846..81397860,+!p3@ZBTB10!1.37!27.98!ZBTB10;;chr4:57522513..57522548,-!p4@HOPX!1.37!22.46!HOPX;;chr3:5020939..5020952,+!p2@BHLHE40!1.36!67.58!BHLHE40;;chr7:50343895..50343936,+!p5@IKZF1!1.36!21.67!IKZF1;;chr3:23986824..23986848,+!p2@NR1D2!1.35!117.23!NR1D2;;chr10:35416142..35416169,+!p3@CREM!1.35!55.17!CREM;;chr8:81397876..81397898,+!p5@ZBTB10!1.35!25.02!ZBTB10;;chr18:46475696..46475713,-!p1@SMAD7!1.35!24.04!SMAD7;;chr6:91006518..91006570,-!p1@BACH2!1.34!47.68!BACH2;;chr4:109087445..109087463,-!p1@LEF1!1.34!20.89!LEF1;;chr4:57522598..57522664,-!p3@HOPX!1.34!20.89!HOPX;;chr1:151030536..151030549,+!p8@MLLT11!1.34!20.69!MLLT11;;chr4:103422499..103422632,+!p1@NFKB1!1.33!412.19!NFKB1;;chr10:3824332..3824425,-!p4@KLF6!1.32!31.92!KLF6;;chr12:72056773..72056796,+!p3@THAP2!1.29!24.04!THAP2;;chr6:106546786..106546802,+!p6@PRDM1!1.29!18.32!PRDM1;;chr7:137620650..137620677,-!p3@CREB3L2!1.29!18.32!CREB3L2;;chr17:38497662..38497713,+!p4@RARA!1.28!21.08!RARA;;chr19:12902289..12902307,+!p1@JUNB!1.27!3938.05!JUNB;;chr7:104654718..104654741,+!p3@MLL5!1.27!25.61!MLL5;;chr3:71542615..71542644,-!p12@FOXP1!1.27!17.54!FOXP1;;chr14:35873947..35873965,-!p1@NFKBIA!1.26!1047.02!NFKBIA;;chr2:61108695..61108753,+!p1@REL!1.26!115.46!REL;;chr9:102584241..102584261,+!p4@NR4A3!1.26!26.60!NR4A3;;chr3:18486354..18486377,-!p2@SATB1!1.26!21.67!SATB1;;chr11:47400078..47400106,-!p1@SPI1!1.26!17.34!SPI1;;chr2:68592394..68592405,+!p2@PLEK!1.26!17.14!PLEK;;chr1:10754477..10754517,-!p1@CASZ1!1.25!27.98!CASZ1;;chr3:27763807..27763822,-!p1@EOMES!1.24!16.55!EOMES;;chr6:106546731..106546755,+!p5@PRDM1!1.24!16.35!PRDM1;;chr19:12721790..12721810,+!p2@ZNF791!1.23!43.74!ZNF791;;chr19:19729477..19729542,-!p1@PBX4!1.23!34.28!PBX4;;chr19:45972701..45972774,+!p2@FOSB!1.23!21.87!FOSB;;chr13:74707894..74707947,-!p6@KLF12!1.22!17.14!KLF12;;chr7:50344289..50344323,+!p1@IKZF1!1.22!15.57!IKZF1;;chr3:101546827..101546847,+!p2@NFKBIZ!1.21!21.28!NFKBIZ;;chr3:39195037..39195069,-!p2@CSRNP1!1.20!91.23!CSRNP1;;chrX:106960221..106960236,-!p3@TSC22D3!1.20!40.98!TSC22D3;;chr9:102584128..102584144,+!p3@NR4A3!1.20!28.18!NR4A3;;chr11:67007611..67007622,+!p6@KDM2A!1.18!18.91!KDM2A;;chr10:104154415..104154434,+!p5@NFKB2!1.18!14.19!NFKB2;;chr2:208394817..208394834,+!p3@CREB1!1.17!55.56!CREB1;;chr3:71355163..71355209,-!p5@FOXP1!1.17!19.31!FOXP1;;chr11:85375237..85375277,-!p4@CREBZF!1.17!15.96!CREBZF;;chr10:104154246..104154347,+!p3@NFKB2!1.16!80.98!NFKB2;;chrX:106960180..106960197,-!p2@TSC22D3!1.16!50.64!TSC22D3;;chr3:39195139..39195150,-!p3@CSRNP1!1.16!16.94!CSRNP1;;chr2:214017168..214017189,-!p8@IKZF2!1.16!13.60!IKZF2;;chr19:54041645..54041661,+!p5@ZNF331!1.16!13.60!ZNF331;;chr16:89789271..89789291,+!p5@ZNF276!1.15!13.20!ZNF276;;chr7:50344251..50344288,+!p3@IKZF1!1.15!13.20!IKZF1;;chr5:133451347..133451358,+!p3@TCF7!1.15!13.00!TCF7;;chr2:43453734..43453751,-!p1@ZFP36L2!1.14!1359.12!ZFP36L2;;chr11:67007548..67007610,+!p3@KDM2A!1.14!93.79!KDM2A;;chr15:57211634..57211657,+!p5@TCF12!1.14!19.31!TCF12;;chr6:91006575..91006602,-!p2@BACH2!1.14!18.91!BACH2;;chr8:60031619..60031676,-!p1@TOX!1.13!26.99!TOX;;chr8:102218439..102218455,-!p3@ZNF706!1.13!12.61!ZNF706;;chr2:122042770..122042785,-!p1@TFCP2L1!1.13!12.61!TFCP2L1;;chr4:38665769..38665801,+!p2@KLF3!1.12!110.73!KLF3;;chr22:38597987..38598021,+!p2@MAFF!1.12!75.27!MAFF;;chr2:61108808..61108821,+!p3@REL!1.12!15.57!REL;;chr19:47616992..47617011,-!p4@ZC3H4!1.11!25.42!ZC3H4;;chr17:45810816..45810838,+!p2@TBX21!1.11!12.02!TBX21;;chr1:37940170..37940190,+!p1@ZC3H12A!1.10!143.83!ZC3H12A;;chr17:38020557..38020572,-!p4@IKZF3!1.10!11.62!IKZF3;;chr2:28616358..28616380,+!p3@FOSL2!1.09!59.11!FOSL2;;chr14:35872962..35873025,-!p3@NFKBIA!1.09!28.57!NFKBIA;;chr8:67525473..67525518,-!p1@MYBL1!1.09!26.21!MYBL1;;chr6:12009042..12009092,+!p6@HIVEP1!1.09!14.78!HIVEP1;;chr4:57522674..57522699,-!p5@HOPX!1.09!11.43!HOPX;;chr12:51158359..51158395,+!p4@ATF1!1.09!11.23!ATF1;;chr14:64971461..64971542,+!p1@ZBTB1!1.08!224.02!ZBTB1;;chr12:72056749..72056767,+!p6@THAP2!1.08!12.41!THAP2;;chr10:3827389..3827408,-!p1@KLF6!1.07!833.83!KLF6;;chr12:57914286..57914304,-!p1@DDIT3!1.07!389.33!DDIT3;;chr2:97202480..97202499,+!p1@ARID5A!1.07!109.94!ARID5A;;chr3:18487057..18487105,-!p4@SATB1!1.07!10.84!SATB1;;chr3:71542684..71542720,-!p18@FOXP1!1.07!10.84!FOXP1;;chrY:2803415..2803468,+!p1@ZFY!1.07!10.84!ZFY;;chr14:99738138..99738163,-!p1@BCL11B!1.07!10.64!BCL11B;;chr13:41593425..41593480,-!p1@ELF1!1.06!67.98!ELF1;;chr9:32550839..32550962,-!p3@TOPORS!1.06!26.40!TOPORS;;chr11:113930425..113930471,+!p1@ZBTB16!1.06!15.37!ZBTB16;;chr21:36421147..36421193,-!p10@RUNX1!1.06!10.44!RUNX1;;chr17:38020516..38020544,-!p5@IKZF3!1.06!10.44!IKZF3;;chr19:18392422..18392440,-!p1@JUND!1.05!1419.80!JUND;;chr1:59249645..59249656,-!p4@JUN!1.05!25.81!JUN;;chr17:7388010..7388017,-!p5@ZBTB4!1.05!17.54!ZBTB4;;chr7:106809470..106809481,+!p2@HBP1!1.05!14.58!HBP1;;chr16:29819579..29819591,+!p32@MAZ!1.05!10.25!MAZ;;chr16:68119324..68119364,+!p1@NFATC3!1.04!44.92!NFATC3;;chr1:91487774..91487802,-!p2@ZNF644!1.04!26.99!ZNF644;;chr9:102584159..102584174,+!p2@NR4A3!1.04!18.32!NR4A3;;chr7:50344144..50344157,+!p6@IKZF1!1.04!10.05!IKZF1;;chr8:123794038..123794056,+!p5@ZHX2!1.03!9.65!ZHX2;;chr3:101568349..101568365,+!p1@NFKBIZ!1.02!498.29!NFKBIZ;;chr7:64838786..64838809,+!p2@ZNF92!1.02!55.37!ZNF92;;chr2:157189617..157189667,-!p4@NR4A2!1.02!9.46!NR4A2;;chr3:71179699..71179744,-!p2@FOXP1!1.01!70.93!FOXP1;;chr6:143266297..143266356,-!p1@HIVEP2!1.01!44.92!HIVEP2;;chr14:75988771..75988826,+!p1@BATF!1.01!12.41!BATF;;chr15:31619407..31619419,+!p9@KLF13!1.01!11.62!KLF13;;chr20:44600199..44600219,-!p3@ZNF335!1.00!12.41!ZNF335;;chr14:69262947..69262986,-!p3@ZFP36L1!1.00!11.03!ZFP36L1;;chr20:57757940..57757966,+!p@chr20:57757940..57757966,+!1.00!9.06!ZNF831;;chr9:102584278..102584285,+!p5@NR4A3!1.00!9.06!NR4A3;;chr11:128392085..128392232,-!p1@ETS1!0.99!302.05!ETS1;;chr2:174828545..174828644,-!p1@SP3!0.99!138.12!SP3;;chr2:145275162..145275202,-!p2@ZEB2!0.99!52.61!ZEB2;;chr21:36421535..36421610,-!p2@RUNX1!0.99!32.12!RUNX1;;chr13:74708029..74708077,-!p2@KLF12!0.99!25.61!KLF12;;chr15:60884747..60884774,-!p3@RORA!0.99!21.87!RORA;;chr5:142782823..142782854,-!p3@NR3C1!0.99!12.61!NR3C1;;chr19:18391615..18391637,-!p5@JUND!0.99!11.62!JUND;;chr4:83822199..83822239,+!p2@THAP9!0.99!10.44!THAP9;;chr7:137620684..137620711,-!p4@CREB3L2!0.99!8.87!CREB3L2;;chr7:99680193..99680204,-!p2@ZNF3!0.99!8.87!ZNF3;;chr1:151030388..151030419,+!p9@MLLT11!0.99!8.67!MLLT11;;chr1:25256175..25256228,-!p5@RUNX3!0.99!8.67!RUNX3;;chr15:31619326..31619390,+!p2@KLF13!0.98!101.08!KLF13;;chr14:90085458..90085557,-!p1@FOXN3!0.98!92.01!FOXN3;;chr6:45390300..45390335,+!p4@RUNX2!0.98!13.40!RUNX2;;chr14:75746722..75746777,+!p2@FOS!0.98!11.03!FOS;;chr4:109090075..109090095,-!p2@LEF1!0.98!8.47!LEF1;;chr19:50529028..50529040,+!p5@ZNF473!0.98!8.47!ZNF473;;chr5:172483347..172483407,+!p1@C5orf41!0.97!64.03!CREBRF;;chr19:45252008..45252024,+!p2@BCL3!0.97!27.98!BCL3;;chr8:71316428..71316459,-!p2@NCOA2!0.97!14.38!NCOA2;;chr20:52226313..52226350,-!p3@ZNF217!0.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| |expression_enrichment_score=chr1:25256756..25256774,-!p1@RUNX3!2.43!482.92!RUNX3;;chr2:192015701..192015743,-!p1@STAT4!2.27!250.43!STAT4;;chr17:45810594..45810608,+!p1@TBX21!2.15!139.89!TBX21;;chr2:157189180..157189290,-!p1@NR4A2!1.94!422.63!NR4A2;;chr19:45971246..45971265,+!p1@FOSB!1.90!1377.44!FOSB;;chr2:68592406..68592424,+!p1@PLEK!1.89!76.64!PLEK;;chr19:54041669..54041697,+!p2@ZNF331!1.86!71.52!ZNF331;;chr1:26697243..26697258,-!p1@ZNF683!1.85!69.35!ZNF683;;chr19:54058073..54058088,+!p1@ZNF331!1.84!68.57!ZNF331;;chr9:117150254..117150271,-!p1@AKNA!1.82!170.83!AKNA;;chr2:61108878..61108891,+!p5@REL!1.81!63.64!REL;;chr7:50343634..50343717,+!p2@IKZF1!1.81!63.05!IKZF1;;chr6:106546808..106546833,+!p3@PRDM1!1.78!73.49!PRDM1;;chr2:192015677..192015691,-!p3@STAT4!1.78!59.11!STAT4;;chr20:50159198..50159299,-!p1@NFATC2!1.77!82.56!NFATC2;;chr3:63953435..63953499,+!p1@ATXN7!1.75!54.97!ATXN7;;chr10:35484053..35484076,+!p1@CREM!1.74!131.03!CREM;;chr10:8096772..8096787,+!p2@GATA3!1.72!60.49!GATA3;;chr15:60884706..60884743,-!p1@RORA!1.71!249.44!RORA;;chr2:145271342..145271377,-!p5@ZEB2!1.68!46.70!ZEB2;;chr14:75745523..75745537,+!p1@FOS!1.67!5105.66!FOS;;chr2:192015750..192015793,-!p2@STAT4!1.67!60.88!STAT4;;chr20:56195474..56195506,-!p1@ZBP1!1.66!44.33!ZBP1;;chr10:8096631..8096660,+!p1@GATA3!1.65!53.00!GATA3;;chr3:39195075..39195088,-!p1@CSRNP1!1.61!238.80!CSRNP1;;chr17:38020392..38020477,-!p1@IKZF3!1.61!39.80!IKZF3;;chr5:133451294..133451310,+!p2@TCF7!1.61!39.80!TCF7;;chr5:133450365..133450444,+!p1@TCF7!1.58!163.93!TCF7;;chr14:64971288..64971316,-!p2@ZBTB25!1.58!110.53!ZBTB25;;chr9:3525727..3525828,-!p2@RFX3!1.56!88.27!RFX3;;chr16:85932760..85932775,+!p1@IRF8!1.56!35.47!IRF8;;chr2:231090433..231090469,+!p1@SP140!1.56!35.47!SP140;;chr9:102584262..102584276,+!p1@NR4A3!1.55!75.86!NR4A3;;chr8:67525443..67525459,-!p2@MYBL1!1.54!49.85!MYBL1;;chrY:21906594..21906622,-!p1@KDM5D!1.54!33.69!KDM5D;;chr6:391743..391759,+!p1@IRF4!1.53!32.51!IRF4;;chr2:145277640..145277771,-!p1@ZEB2!1.51!403.52!ZEB2;;chr12:72056800..72056834,+!p1@THAP2!1.51!41.77!THAP2;;chr1:25291475..25291511,-!p2@RUNX3!1.51!31.13!RUNX3;;chr8:123793988..123794016,+!p1@ZHX2!1.50!52.80!ZHX2;;chr1:26697189..26697205,-!p2@ZNF683!1.49!29.95!ZNF683;;chr2:231090471..231090504,+!p2@SP140!1.49!29.75!SP140;;chr1:59249688..59249703,-!p3@JUN!1.48!168.46!JUN;;chr17:37934365..37934387,-!p2@IKZF3!1.47!28.77!IKZF3;;chr1:59249707..59249727,-!p1@JUN!1.46!1123.86!JUN;;chr8:81397820..81397836,+!p2@ZBTB10!1.46!34.48!ZBTB10;;chr4:57522166..57522260,-!p2@HOPX!1.45!30.93!HOPX;;chr5:131826457..131826514,-!p1@IRF1!1.44!998.75!IRF1;;chr19:16435625..16435682,+!p1@KLF2!1.42!774.53!KLF2;;chr10:35484090..35484104,+!p6@CREM!1.41!24.63!CREM;;chr6:106546834..106546850,+!p4@PRDM1!1.40!23.84!PRDM1;;chr7:104654690..104654704,+!p2@MLL5!1.38!45.12!MLL5;;chr8:123793252..123793266,+!p10@ZHX2!1.38!23.25!ZHX2;;chr21:36421347..36421380,-!p8@RUNX1!1.38!23.25!RUNX1;;chrX:106960285..106960299,-!p1@TSC22D3!1.37!585.18!TSC22D3;;chr8:81397846..81397860,+!p3@ZBTB10!1.37!27.98!ZBTB10;;chr4:57522513..57522548,-!p4@HOPX!1.37!22.46!HOPX;;chr3:5020939..5020952,+!p2@BHLHE40!1.36!67.58!BHLHE40;;chr7:50343895..50343936,+!p5@IKZF1!1.36!21.67!IKZF1;;chr3:23986824..23986848,+!p2@NR1D2!1.35!117.23!NR1D2;;chr10:35416142..35416169,+!p3@CREM!1.35!55.17!CREM;;chr8:81397876..81397898,+!p5@ZBTB10!1.35!25.02!ZBTB10;;chr18:46475696..46475713,-!p1@SMAD7!1.35!24.04!SMAD7;;chr6:91006518..91006570,-!p1@BACH2!1.34!47.68!BACH2;;chr4:109087445..109087463,-!p1@LEF1!1.34!20.89!LEF1;;chr4:57522598..57522664,-!p3@HOPX!1.34!20.89!HOPX;;chr1:151030536..151030549,+!p8@MLLT11!1.34!20.69!MLLT11;;chr4:103422499..103422632,+!p1@NFKB1!1.33!412.19!NFKB1;;chr10:3824332..3824425,-!p4@KLF6!1.32!31.92!KLF6;;chr12:72056773..72056796,+!p3@THAP2!1.29!24.04!THAP2;;chr6:106546786..106546802,+!p6@PRDM1!1.29!18.32!PRDM1;;chr7:137620650..137620677,-!p3@CREB3L2!1.29!18.32!CREB3L2;;chr17:38497662..38497713,+!p4@RARA!1.28!21.08!RARA;;chr19:12902289..12902307,+!p1@JUNB!1.27!3938.05!JUNB;;chr7:104654718..104654741,+!p3@MLL5!1.27!25.61!MLL5;;chr3:71542615..71542644,-!p12@FOXP1!1.27!17.54!FOXP1;;chr14:35873947..35873965,-!p1@NFKBIA!1.26!1047.02!NFKBIA;;chr2:61108695..61108753,+!p1@REL!1.26!115.46!REL;;chr9:102584241..102584261,+!p4@NR4A3!1.26!26.60!NR4A3;;chr3:18486354..18486377,-!p2@SATB1!1.26!21.67!SATB1;;chr11:47400078..47400106,-!p1@SPI1!1.26!17.34!SPI1;;chr2:68592394..68592405,+!p2@PLEK!1.26!17.14!PLEK;;chr1:10754477..10754517,-!p1@CASZ1!1.25!27.98!CASZ1;;chr3:27763807..27763822,-!p1@EOMES!1.24!16.55!EOMES;;chr6:106546731..106546755,+!p5@PRDM1!1.24!16.35!PRDM1;;chr19:12721790..12721810,+!p2@ZNF791!1.23!43.74!ZNF791;;chr19:19729477..19729542,-!p1@PBX4!1.23!34.28!PBX4;;chr19:45972701..45972774,+!p2@FOSB!1.23!21.87!FOSB;;chr13:74707894..74707947,-!p6@KLF12!1.22!17.14!KLF12;;chr7:50344289..50344323,+!p1@IKZF1!1.22!15.57!IKZF1;;chr3:101546827..101546847,+!p2@NFKBIZ!1.21!21.28!NFKBIZ;;chr3:39195037..39195069,-!p2@CSRNP1!1.20!91.23!CSRNP1;;chrX:106960221..106960236,-!p3@TSC22D3!1.20!40.98!TSC22D3;;chr9:102584128..102584144,+!p3@NR4A3!1.20!28.18!NR4A3;;chr11:67007611..67007622,+!p6@KDM2A!1.18!18.91!KDM2A;;chr10:104154415..104154434,+!p5@NFKB2!1.18!14.19!NFKB2;;chr2:208394817..208394834,+!p3@CREB1!1.17!55.56!CREB1;;chr3:71355163..71355209,-!p5@FOXP1!1.17!19.31!FOXP1;;chr11:85375237..85375277,-!p4@CREBZF!1.17!15.96!CREBZF;;chr10:104154246..104154347,+!p3@NFKB2!1.16!80.98!NFKB2;;chrX:106960180..106960197,-!p2@TSC22D3!1.16!50.64!TSC22D3;;chr3:39195139..39195150,-!p3@CSRNP1!1.16!16.94!CSRNP1;;chr2:214017168..214017189,-!p8@IKZF2!1.16!13.60!IKZF2;;chr19:54041645..54041661,+!p5@ZNF331!1.16!13.60!ZNF331;;chr16:89789271..89789291,+!p5@ZNF276!1.15!13.20!ZNF276;;chr7:50344251..50344288,+!p3@IKZF1!1.15!13.20!IKZF1;;chr5:133451347..133451358,+!p3@TCF7!1.15!13.00!TCF7;;chr2:43453734..43453751,-!p1@ZFP36L2!1.14!1359.12!ZFP36L2;;chr11:67007548..67007610,+!p3@KDM2A!1.14!93.79!KDM2A;;chr15:57211634..57211657,+!p5@TCF12!1.14!19.31!TCF12;;chr6:91006575..91006602,-!p2@BACH2!1.14!18.91!BACH2;;chr8:60031619..60031676,-!p1@TOX!1.13!26.99!TOX;;chr8:102218439..102218455,-!p3@ZNF706!1.13!12.61!ZNF706;;chr2:122042770..122042785,-!p1@TFCP2L1!1.13!12.61!TFCP2L1;;chr4:38665769..38665801,+!p2@KLF3!1.12!110.73!KLF3;;chr22:38597987..38598021,+!p2@MAFF!1.12!75.27!MAFF;;chr2:61108808..61108821,+!p3@REL!1.12!15.57!REL;;chr19:47616992..47617011,-!p4@ZC3H4!1.11!25.42!ZC3H4;;chr17:45810816..45810838,+!p2@TBX21!1.11!12.02!TBX21;;chr1:37940170..37940190,+!p1@ZC3H12A!1.10!143.83!ZC3H12A;;chr17:38020557..38020572,-!p4@IKZF3!1.10!11.62!IKZF3;;chr2:28616358..28616380,+!p3@FOSL2!1.09!59.11!FOSL2;;chr14:35872962..35873025,-!p3@NFKBIA!1.09!28.57!NFKBIA;;chr8:67525473..67525518,-!p1@MYBL1!1.09!26.21!MYBL1;;chr6:12009042..12009092,+!p6@HIVEP1!1.09!14.78!HIVEP1;;chr4:57522674..57522699,-!p5@HOPX!1.09!11.43!HOPX;;chr12:51158359..51158395,+!p4@ATF1!1.09!11.23!ATF1;;chr14:64971461..64971542,+!p1@ZBTB1!1.08!224.02!ZBTB1;;chr12:72056749..72056767,+!p6@THAP2!1.08!12.41!THAP2;;chr10:3827389..3827408,-!p1@KLF6!1.07!833.83!KLF6;;chr12:57914286..57914304,-!p1@DDIT3!1.07!389.33!DDIT3;;chr2:97202480..97202499,+!p1@ARID5A!1.07!109.94!ARID5A;;chr3:18487057..18487105,-!p4@SATB1!1.07!10.84!SATB1;;chr3:71542684..71542720,-!p18@FOXP1!1.07!10.84!FOXP1;;chrY:2803415..2803468,+!p1@ZFY!1.07!10.84!ZFY;;chr14:99738138..99738163,-!p1@BCL11B!1.07!10.64!BCL11B;;chr13:41593425..41593480,-!p1@ELF1!1.06!67.98!ELF1;;chr9:32550839..32550962,-!p3@TOPORS!1.06!26.40!TOPORS;;chr11:113930425..113930471,+!p1@ZBTB16!1.06!15.37!ZBTB16;;chr21:36421147..36421193,-!p10@RUNX1!1.06!10.44!RUNX1;;chr17:38020516..38020544,-!p5@IKZF3!1.06!10.44!IKZF3;;chr19:18392422..18392440,-!p1@JUND!1.05!1419.80!JUND;;chr1:59249645..59249656,-!p4@JUN!1.05!25.81!JUN;;chr17:7388010..7388017,-!p5@ZBTB4!1.05!17.54!ZBTB4;;chr7:106809470..106809481,+!p2@HBP1!1.05!14.58!HBP1;;chr16:29819579..29819591,+!p32@MAZ!1.05!10.25!MAZ;;chr16:68119324..68119364,+!p1@NFATC3!1.04!44.92!NFATC3;;chr1:91487774..91487802,-!p2@ZNF644!1.04!26.99!ZNF644;;chr9:102584159..102584174,+!p2@NR4A3!1.04!18.32!NR4A3;;chr7:50344144..50344157,+!p6@IKZF1!1.04!10.05!IKZF1;;chr8:123794038..123794056,+!p5@ZHX2!1.03!9.65!ZHX2;;chr3:101568349..101568365,+!p1@NFKBIZ!1.02!498.29!NFKBIZ;;chr7:64838786..64838809,+!p2@ZNF92!1.02!55.37!ZNF92;;chr2:157189617..157189667,-!p4@NR4A2!1.02!9.46!NR4A2;;chr3:71179699..71179744,-!p2@FOXP1!1.01!70.93!FOXP1;;chr6:143266297..143266356,-!p1@HIVEP2!1.01!44.92!HIVEP2;;chr14:75988771..75988826,+!p1@BATF!1.01!12.41!BATF;;chr15:31619407..31619419,+!p9@KLF13!1.01!11.62!KLF13;;chr20:44600199..44600219,-!p3@ZNF335!1.00!12.41!ZNF335;;chr14:69262947..69262986,-!p3@ZFP36L1!1.00!11.03!ZFP36L1;;chr20:57757940..57757966,+!p@chr20:57757940..57757966,+!1.00!9.06!ZNF831;;chr9:102584278..102584285,+!p5@NR4A3!1.00!9.06!NR4A3;;chr11:128392085..128392232,-!p1@ETS1!0.99!302.05!ETS1;;chr2:174828545..174828644,-!p1@SP3!0.99!138.12!SP3;;chr2:145275162..145275202,-!p2@ZEB2!0.99!52.61!ZEB2;;chr21:36421535..36421610,-!p2@RUNX1!0.99!32.12!RUNX1;;chr13:74708029..74708077,-!p2@KLF12!0.99!25.61!KLF12;;chr15:60884747..60884774,-!p3@RORA!0.99!21.87!RORA;;chr5:142782823..142782854,-!p3@NR3C1!0.99!12.61!NR3C1;;chr19:18391615..18391637,-!p5@JUND!0.99!11.62!JUND;;chr4:83822199..83822239,+!p2@THAP9!0.99!10.44!THAP9;;chr7:137620684..137620711,-!p4@CREB3L2!0.99!8.87!CREB3L2;;chr7:99680193..99680204,-!p2@ZNF3!0.99!8.87!ZNF3;;chr1:151030388..151030419,+!p9@MLLT11!0.99!8.67!MLLT11;;chr1:25256175..25256228,-!p5@RUNX3!0.99!8.67!RUNX3;;chr15:31619326..31619390,+!p2@KLF13!0.98!101.08!KLF13;;chr14:90085458..90085557,-!p1@FOXN3!0.98!92.01!FOXN3;;chr6:45390300..45390335,+!p4@RUNX2!0.98!13.40!RUNX2;;chr14:75746722..75746777,+!p2@FOS!0.98!11.03!FOS;;chr4:109090075..109090095,-!p2@LEF1!0.98!8.47!LEF1;;chr19:50529028..50529040,+!p5@ZNF473!0.98!8.47!ZNF473;;chr5:172483347..172483407,+!p1@C5orf41!0.97!64.03!CREBRF;;chr19:45252008..45252024,+!p2@BCL3!0.97!27.98!BCL3;;chr8:71316428..71316459,-!p2@NCOA2!0.97!14.38!NCOA2;;chr20:52226313..52226350,-!p3@ZNF217!0.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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000623;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988 | |||
|ffid_belonging_in_development=CL:0000134,CL:0000051 | |ffid_belonging_in_development=CL:0000134,CL:0000051 | ||
|fonse_cell_line= | |fonse_cell_line= | ||
Line 39: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Natural%2520Killer%2520Cells%252c%2520donor1.CNhs10859.11230-116C6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Natural%2520Killer%2520Cells%252c%2520donor1.CNhs10859.11230-116C6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Natural%2520Killer%2520Cells%252c%2520donor1.CNhs10859.11230-116C6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Natural%2520Killer%2520Cells%252c%2520donor1.CNhs10859.11230-116C6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Natural%2520Killer%2520Cells%252c%2520donor1.CNhs10859.11230-116C6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11230-116C6 | |id=FF:11230-116C6 | ||
|is_a=EFO:0002091;;FF:0000119 | |is_a=EFO:0002091;;FF:0000119 | ||
|is_obsolete= | |is_obsolete= | ||
| | |library_id=CNhs10859 | ||
|library_id_phase_based=2:CNhs10859 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11230 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10010.ATGTCA.11230 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11230 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10010.ATGTCA.11230 | |||
|name=Natural Killer Cells, donor1 | |name=Natural Killer Cells, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 48: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10859,LSID702,release008,COMPLETED | |profile_hcage=CNhs10859,LSID702,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10010,,, | |profile_srnaseq=SRhi10010,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| ||
Line 64: | Line 82: | ||
|rna_tube_id=116C6 | |rna_tube_id=116C6 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10010.ATGTCA | |||
|sample_age=47 | |sample_age=47 | ||
|sample_category=primary cells | |sample_category=primary cells | ||
Line 87: | Line 106: | ||
|top_motifs=RORA:4.54284170619;PAX3,7:3.87128400184;RUNX1..3:3.71473833468;CREB1:3.62516220857;ATF5_CREB3:3.50083091249;ATF4:3.42713696972;RFX2..5_RFXANK_RFXAP:3.25301354337;NFKB1_REL_RELA:2.98368455824;FOXO1,3,4:2.97329513557;FOX{D1,D2}:2.96774058542;T:2.92923002669;ELF1,2,4:2.90416625732;ETS1,2:2.74113497615;DMAP1_NCOR{1,2}_SMARC:2.65922060281;PAX2:2.59992724355;BPTF:2.56386926169;FOXN1:2.2906723776;TBX4,5:2.26163588883;RFX1:2.12691290293;TGIF1:2.11851634851;SPI1:2.11154620654;JUN:2.05658330079;FOX{F1,F2,J1}:1.90589620056;TLX2:1.80840314096;IRF1,2:1.77072984459;HMX1:1.76261447811;SPIB:1.74535098932;ATF2:1.6324684267;ATF6:1.58615782935;PITX1..3:1.40886017792;FOXP1:1.36483374814;FOX{I1,J2}:1.32814420657;NKX2-1,4:1.29923881037;HIF1A:1.2253645613;EP300:1.17991784776;FOSL2:1.16275434893;NFATC1..3:1.11604151996;FOS_FOS{B,L1}_JUN{B,D}:1.02219781072;HMGA1,2:0.967763875476;ZBTB16:0.966759448686;NANOG{mouse}:0.95500016144;BREu{core}:0.945372635986;IRF7:0.842114763137;LEF1_TCF7_TCF7L1,2:0.816278813916;PAX6:0.813257795089;BACH2:0.708037819354;IKZF2:0.696150384723;SREBF1,2:0.679652173062;FOXP3:0.667776590647;MAFB:0.667656631755;SOX2:0.659726805125;ZNF384:0.648107740381;NFIL3:0.640763281488;NFE2:0.639778752698;ELK1,4_GABP{A,B1}:0.635486765897;MYB:0.594802653735;SMAD1..7,9:0.561950372171;PAX4:0.522977413836;CDX1,2,4:0.448178264478;GATA6:0.365812077416;EGR1..3:0.349282013384;NKX6-1,2:0.330759635103;TFDP1:0.308253718498;STAT2,4,6:0.295850038061;CEBPA,B_DDIT3:0.235274466469;NFE2L1:0.18738506401;HLF:0.158961422958;RBPJ:0.14711791106;MYFfamily:0.111141622503;PDX1:0.111032405207;RREB1:0.0876750440215;HBP1_HMGB_SSRP1_UBTF:0.0861414977178;NFE2L2:0.0817217047857;NFY{A,B,C}:0.0331267686222;AHR_ARNT_ARNT2:0.0203089447346;PPARG:0.0174250194827;RXRA_VDR{dimer}:0.0120295822754;NANOG:-0.022531992828;GCM1,2:-0.110943428422;HOX{A6,A7,B6,B7}:-0.145303671584;FOXQ1:-0.221767937621;SOX5:-0.238650029298;STAT1,3:-0.24274418762;CRX:-0.244702775078;POU2F1..3:-0.329076463613;FOXL1:-0.335337834385;E2F1..5:-0.351941404592;TOPORS:-0.369867891346;GLI1..3:-0.433126127411;NRF1:-0.433921094613;AIRE:-0.434207578494;ZEB1:-0.447630929545;HOXA9_MEIS1:-0.450157459846;PBX1:-0.450483762171;ZFP161:-0.451184715643;SNAI1..3:-0.491318205558;PRRX1,2:-0.498114854138;MTE{core}:-0.513796188196;MED-1{core}:-0.517536215845;MYOD1:-0.534453168445;NKX3-1:-0.577913079392;CUX2:-0.581062184293;HSF1,2:-0.584710908721;SRF:-0.588514604228;XBP1:-0.604316252471;TAL1_TCF{3,4,12}:-0.6073801045;NFIX:-0.613113118696;HES1:-0.621327322803;PAX5:-0.642335251158;TFAP4:-0.644847746924;FOXD3:-0.648100762235;PATZ1:-0.650861953519;TFAP2B:-0.652754611785;NHLH1,2:-0.705515720092;DBP:-0.719023979973;MZF1:-0.761415166515;STAT5{A,B}:-0.765598314311;SPZ1:-0.77889311453;EVI1:-0.779799938546;HNF1A:-0.794758217689;HNF4A_NR2F1,2:-0.823075124417;SOX{8,9,10}:-0.839539787292;MTF1:-0.84203779726;NR5A1,2:-0.847074636953;NR1H4:-0.850410549119;MAZ:-0.85938291639;REST:-0.883811313835;bHLH_family:-0.895111515282;MEF2{A,B,C,D}:-0.89972933878;TFCP2:-0.908010895805;OCT4_SOX2{dimer}:-0.911938379544;GATA4:-0.912460044204;YY1:-0.944839484601;SP1:-0.987667043155;AR:-0.990852345062;LMO2:-1.00009145781;ZNF148:-1.01055227903;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.01522386525;FOXA2:-1.01740249685;LHX3,4:-1.02269290169;TFAP2{A,C}:-1.02788129312;ZBTB6:-1.0455277388;ALX4:-1.07670335348;ESRRA:-1.12832431452;FOXM1:-1.13953455585;HIC1:-1.18437005189;ZNF143:-1.20555918128;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.22976466061;ZNF423:-1.25486634992;ZNF238:-1.2746573615;NKX2-2,8:-1.2977149184;MYBL2:-1.3049857755;ZIC1..3:-1.33400263286;VSX1,2:-1.35562411238;ALX1:-1.36791881712;POU5F1:-1.37448755473;TBP:-1.376184528;GFI1:-1.3874997917;PAX8:-1.47210020173;XCPE1{core}:-1.48414775416;RXR{A,B,G}:-1.48633455545;SOX17:-1.58363368953;HOX{A5,B5}:-1.586818244;TP53:-1.59178712531;CDC5L:-1.6512822012;GTF2I:-1.73812675455;GTF2A1,2:-1.80524008862;GFI1B:-1.80774554157;EN1,2:-1.8630579372;TEAD1:-1.88908533263;ARID5B:-1.88913968363;NKX2-3_NKX2-5:-1.88995981251;HAND1,2:-1.91527620615;TLX1..3_NFIC{dimer}:-1.91581302623;ESR1:-1.95678197733;GZF1:-1.95779883154;POU1F1:-1.9578916231;UFEwm:-1.96608240252;PRDM1:-2.02268532768;TEF:-2.02479109574;POU6F1:-2.04696487437;HOX{A4,D4}:-2.15369130756;POU3F1..4:-2.18809074293;IKZF1:-2.38086878413;EBF1:-2.40546640124;KLF4:-2.46571274922;ADNP_IRX_SIX_ZHX:-2.47400756013;NKX3-2:-2.63544542823;PAX1,9:-2.72343148039;NR6A1:-2.72551060221;NR3C1:-2.91884518532;ONECUT1,2:-3.07519189978 | |top_motifs=RORA:4.54284170619;PAX3,7:3.87128400184;RUNX1..3:3.71473833468;CREB1:3.62516220857;ATF5_CREB3:3.50083091249;ATF4:3.42713696972;RFX2..5_RFXANK_RFXAP:3.25301354337;NFKB1_REL_RELA:2.98368455824;FOXO1,3,4:2.97329513557;FOX{D1,D2}:2.96774058542;T:2.92923002669;ELF1,2,4:2.90416625732;ETS1,2:2.74113497615;DMAP1_NCOR{1,2}_SMARC:2.65922060281;PAX2:2.59992724355;BPTF:2.56386926169;FOXN1:2.2906723776;TBX4,5:2.26163588883;RFX1:2.12691290293;TGIF1:2.11851634851;SPI1:2.11154620654;JUN:2.05658330079;FOX{F1,F2,J1}:1.90589620056;TLX2:1.80840314096;IRF1,2:1.77072984459;HMX1:1.76261447811;SPIB:1.74535098932;ATF2:1.6324684267;ATF6:1.58615782935;PITX1..3:1.40886017792;FOXP1:1.36483374814;FOX{I1,J2}:1.32814420657;NKX2-1,4:1.29923881037;HIF1A:1.2253645613;EP300:1.17991784776;FOSL2:1.16275434893;NFATC1..3:1.11604151996;FOS_FOS{B,L1}_JUN{B,D}:1.02219781072;HMGA1,2:0.967763875476;ZBTB16:0.966759448686;NANOG{mouse}:0.95500016144;BREu{core}:0.945372635986;IRF7:0.842114763137;LEF1_TCF7_TCF7L1,2:0.816278813916;PAX6:0.813257795089;BACH2:0.708037819354;IKZF2:0.696150384723;SREBF1,2:0.679652173062;FOXP3:0.667776590647;MAFB:0.667656631755;SOX2:0.659726805125;ZNF384:0.648107740381;NFIL3:0.640763281488;NFE2:0.639778752698;ELK1,4_GABP{A,B1}:0.635486765897;MYB:0.594802653735;SMAD1..7,9:0.561950372171;PAX4:0.522977413836;CDX1,2,4:0.448178264478;GATA6:0.365812077416;EGR1..3:0.349282013384;NKX6-1,2:0.330759635103;TFDP1:0.308253718498;STAT2,4,6:0.295850038061;CEBPA,B_DDIT3:0.235274466469;NFE2L1:0.18738506401;HLF:0.158961422958;RBPJ:0.14711791106;MYFfamily:0.111141622503;PDX1:0.111032405207;RREB1:0.0876750440215;HBP1_HMGB_SSRP1_UBTF:0.0861414977178;NFE2L2:0.0817217047857;NFY{A,B,C}:0.0331267686222;AHR_ARNT_ARNT2:0.0203089447346;PPARG:0.0174250194827;RXRA_VDR{dimer}:0.0120295822754;NANOG:-0.022531992828;GCM1,2:-0.110943428422;HOX{A6,A7,B6,B7}:-0.145303671584;FOXQ1:-0.221767937621;SOX5:-0.238650029298;STAT1,3:-0.24274418762;CRX:-0.244702775078;POU2F1..3:-0.329076463613;FOXL1:-0.335337834385;E2F1..5:-0.351941404592;TOPORS:-0.369867891346;GLI1..3:-0.433126127411;NRF1:-0.433921094613;AIRE:-0.434207578494;ZEB1:-0.447630929545;HOXA9_MEIS1:-0.450157459846;PBX1:-0.450483762171;ZFP161:-0.451184715643;SNAI1..3:-0.491318205558;PRRX1,2:-0.498114854138;MTE{core}:-0.513796188196;MED-1{core}:-0.517536215845;MYOD1:-0.534453168445;NKX3-1:-0.577913079392;CUX2:-0.581062184293;HSF1,2:-0.584710908721;SRF:-0.588514604228;XBP1:-0.604316252471;TAL1_TCF{3,4,12}:-0.6073801045;NFIX:-0.613113118696;HES1:-0.621327322803;PAX5:-0.642335251158;TFAP4:-0.644847746924;FOXD3:-0.648100762235;PATZ1:-0.650861953519;TFAP2B:-0.652754611785;NHLH1,2:-0.705515720092;DBP:-0.719023979973;MZF1:-0.761415166515;STAT5{A,B}:-0.765598314311;SPZ1:-0.77889311453;EVI1:-0.779799938546;HNF1A:-0.794758217689;HNF4A_NR2F1,2:-0.823075124417;SOX{8,9,10}:-0.839539787292;MTF1:-0.84203779726;NR5A1,2:-0.847074636953;NR1H4:-0.850410549119;MAZ:-0.85938291639;REST:-0.883811313835;bHLH_family:-0.895111515282;MEF2{A,B,C,D}:-0.89972933878;TFCP2:-0.908010895805;OCT4_SOX2{dimer}:-0.911938379544;GATA4:-0.912460044204;YY1:-0.944839484601;SP1:-0.987667043155;AR:-0.990852345062;LMO2:-1.00009145781;ZNF148:-1.01055227903;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.01522386525;FOXA2:-1.01740249685;LHX3,4:-1.02269290169;TFAP2{A,C}:-1.02788129312;ZBTB6:-1.0455277388;ALX4:-1.07670335348;ESRRA:-1.12832431452;FOXM1:-1.13953455585;HIC1:-1.18437005189;ZNF143:-1.20555918128;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.22976466061;ZNF423:-1.25486634992;ZNF238:-1.2746573615;NKX2-2,8:-1.2977149184;MYBL2:-1.3049857755;ZIC1..3:-1.33400263286;VSX1,2:-1.35562411238;ALX1:-1.36791881712;POU5F1:-1.37448755473;TBP:-1.376184528;GFI1:-1.3874997917;PAX8:-1.47210020173;XCPE1{core}:-1.48414775416;RXR{A,B,G}:-1.48633455545;SOX17:-1.58363368953;HOX{A5,B5}:-1.586818244;TP53:-1.59178712531;CDC5L:-1.6512822012;GTF2I:-1.73812675455;GTF2A1,2:-1.80524008862;GFI1B:-1.80774554157;EN1,2:-1.8630579372;TEAD1:-1.88908533263;ARID5B:-1.88913968363;NKX2-3_NKX2-5:-1.88995981251;HAND1,2:-1.91527620615;TLX1..3_NFIC{dimer}:-1.91581302623;ESR1:-1.95678197733;GZF1:-1.95779883154;POU1F1:-1.9578916231;UFEwm:-1.96608240252;PRDM1:-2.02268532768;TEF:-2.02479109574;POU6F1:-2.04696487437;HOX{A4,D4}:-2.15369130756;POU3F1..4:-2.18809074293;IKZF1:-2.38086878413;EBF1:-2.40546640124;KLF4:-2.46571274922;ADNP_IRX_SIX_ZHX:-2.47400756013;NKX3-2:-2.63544542823;PAX1,9:-2.72343148039;NR6A1:-2.72551060221;NR3C1:-2.91884518532;ONECUT1,2:-3.07519189978 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11230-116C6;search_select_hide=table117:FF:11230-116C6 | |||
| | |||
}} | }} |
Latest revision as of 16:26, 3 June 2020
Name: | Natural Killer Cells, donor1 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs10859 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10859
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10859
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.904 |
10 | 10 | 0.0169 |
100 | 100 | 0.792 |
101 | 101 | 0.56 |
102 | 102 | 0.992 |
103 | 103 | 0.798 |
104 | 104 | 0.694 |
105 | 105 | 0.402 |
106 | 106 | 0.25 |
107 | 107 | 0.038 |
108 | 108 | 0.36 |
109 | 109 | 0.857 |
11 | 11 | 0.891 |
110 | 110 | 0.36 |
111 | 111 | 0.536 |
112 | 112 | 0.896 |
113 | 113 | 0.277 |
114 | 114 | 0.934 |
115 | 115 | 0.215 |
116 | 116 | 0.112 |
117 | 117 | 0.0134 |
118 | 118 | 0.469 |
119 | 119 | 0.333 |
12 | 12 | 0.371 |
120 | 120 | 0.192 |
121 | 121 | 0.392 |
122 | 122 | 0.648 |
123 | 123 | 0.00365 |
124 | 124 | 0.944 |
125 | 125 | 0.593 |
126 | 126 | 0.442 |
127 | 127 | 0.764 |
128 | 128 | 0.884 |
129 | 129 | 0.252 |
13 | 13 | 0.5 |
130 | 130 | 0.262 |
131 | 131 | 0.273 |
132 | 132 | 0.0845 |
133 | 133 | 0.471 |
134 | 134 | 0.831 |
135 | 135 | 0.679 |
136 | 136 | 0.874 |
137 | 137 | 0.0231 |
138 | 138 | 0.479 |
139 | 139 | 0.18 |
14 | 14 | 0.475 |
140 | 140 | 0.733 |
141 | 141 | 0.875 |
142 | 142 | 0.519 |
143 | 143 | 0.00909 |
144 | 144 | 0.879 |
145 | 145 | 0.543 |
146 | 146 | 0.551 |
147 | 147 | 0.0226 |
148 | 148 | 0.542 |
149 | 149 | 0.121 |
15 | 15 | 0.301 |
150 | 150 | 0.991 |
151 | 151 | 0.443 |
152 | 152 | 0.841 |
153 | 153 | 0.893 |
154 | 154 | 0.249 |
155 | 155 | 0.101 |
156 | 156 | 0.694 |
157 | 157 | 0.687 |
158 | 158 | 0.0133 |
159 | 159 | 0.609 |
16 | 16 | 0.287 |
160 | 160 | 0.0307 |
161 | 161 | 0.924 |
162 | 162 | 0.00736 |
163 | 163 | 0.897 |
164 | 164 | 0.173 |
165 | 165 | 0.632 |
166 | 166 | 0.572 |
167 | 167 | 0.214 |
168 | 168 | 0.719 |
169 | 169 | 0.211 |
17 | 17 | 0.708 |
18 | 18 | 0.846 |
19 | 19 | 0.0298 |
2 | 2 | 0.139 |
20 | 20 | 0.178 |
21 | 21 | 0.551 |
22 | 22 | 0.314 |
23 | 23 | 0.994 |
24 | 24 | 0.776 |
25 | 25 | 0.189 |
26 | 26 | 0.763 |
27 | 27 | 0.489 |
28 | 28 | 0.394 |
29 | 29 | 0.128 |
3 | 3 | 0.729 |
30 | 30 | 0.0921 |
31 | 31 | 0.632 |
32 | 32 | 0.00241 |
33 | 33 | 0.365 |
34 | 34 | 0.518 |
35 | 35 | 0.431 |
36 | 36 | 0.0986 |
37 | 37 | 0.498 |
38 | 38 | 0.709 |
39 | 39 | 0.478 |
4 | 4 | 0.765 |
40 | 40 | 0.919 |
41 | 41 | 0.0387 |
42 | 42 | 0.544 |
43 | 43 | 0.445 |
44 | 44 | 0.492 |
45 | 45 | 0.163 |
46 | 46 | 0.911 |
47 | 47 | 0.963 |
48 | 48 | 0.864 |
49 | 49 | 0.285 |
5 | 5 | 0.482 |
50 | 50 | 0.523 |
51 | 51 | 0.922 |
52 | 52 | 0.869 |
53 | 53 | 0.357 |
54 | 54 | 0.968 |
55 | 55 | 0.313 |
56 | 56 | 0.776 |
57 | 57 | 0.614 |
58 | 58 | 0.206 |
59 | 59 | 0.189 |
6 | 6 | 0.774 |
60 | 60 | 0.521 |
61 | 61 | 0.326 |
62 | 62 | 0.335 |
63 | 63 | 0.637 |
64 | 64 | 0.912 |
65 | 65 | 0.561 |
66 | 66 | 0.447 |
67 | 67 | 0.615 |
68 | 68 | 0.606 |
69 | 69 | 0.576 |
7 | 7 | 0.559 |
70 | 70 | 0.28 |
71 | 71 | 0.24 |
72 | 72 | 0.24 |
73 | 73 | 0.528 |
74 | 74 | 0.952 |
75 | 75 | 0.0731 |
76 | 76 | 0.132 |
77 | 77 | 0.00315 |
78 | 78 | 0.983 |
79 | 79 | 0.893 |
8 | 8 | 0.215 |
80 | 80 | 0.00856 |
81 | 81 | 0.971 |
82 | 82 | 0.667 |
83 | 83 | 0.59 |
84 | 84 | 0.147 |
85 | 85 | 0.761 |
86 | 86 | 0.0495 |
87 | 87 | 0.894 |
88 | 88 | 0.725 |
89 | 89 | 0.00789 |
9 | 9 | 0.965 |
90 | 90 | 0.833 |
91 | 91 | 0.703 |
92 | 92 | 0.586 |
93 | 93 | 0.656 |
94 | 94 | 0.222 |
95 | 95 | 0.289 |
96 | 96 | 0.934 |
97 | 97 | 0.559 |
98 | 98 | 0.597 |
99 | 99 | 4.34782e-7 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10859
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000623 (natural killer cell)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000119 (human natural killer cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)