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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS008486
|DRA_sample_Accession=CAGE@SAMD00005797
|accession_numbers=CAGE;DRX008594;DRR009466;DRZ000891;DRZ002276;DRZ012241;DRZ013626
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000075,CL:0000066,CL:0002371,CL:0000325,CL:0000147,CL:0000710,CL:0000255,CL:0002077,CL:0000148
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000075,CL:0000066,CL:0002371,CL:0000325,CL:0000147,CL:0000710,CL:0000255,CL:0002077,CL:0000148
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
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553..158985574,+!p14@IFI16!0.62!3.19!IFI16;;chr6:10412477..10412490,-!p10@TFAP2A!0.62!3.19!TFAP2A;;chr1:935398..935465,-!p2@HES4!0.61!7.10!HES4;;chr9:99180662..99180690,-!p2@ZNF367!0.61!4.63!ZNF367;;chr2:176994408..176994492,+!p1@HOXD8!0.61!3.08!HOXD8;;chr18:3449720..3449749,+!p2@TGIF1!0.60!7.10!TGIF1;;chr9:99180597..99180614,-!p3@ZNF367!0.60!3.50!ZNF367;;chr12:26277929..26277955,-!p3@BHLHE41!0.59!4.42!BHLHE41;;chr11:16627528..16627550,-!p7@SOX6!0.59!2.88!SOX6;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.59!2.88!HOXC5;;chr13:41635759..41635774,-!p21@ELF1!0.59!2.88!ELF1;;chr2:96012353..96012378,+!p4@KCNIP3!0.59!2.88!KCNIP3;;chr11:65686732..65686756,+!p2@DRAP1!0.58!14.29!DRAP1;;chr19:22817119..22817145,+!p1@ZNF492!0.58!5.14!ZNF492;;chr20:50179368..50179392,-!p2@NFATC2!0.58!3.80!NFATC2;;chr4:109089901..109089930,-!p3@LEF1!0.58!2.78!LEF1;;chr6:10415645..10415675,-!p19@TFAP2A!0.58!2.78!TFAP2A;;chr1:204042233..204042249,+!p1@SOX13!0.57!20.87!SOX13;;chr6:19837592..19837621,+!p1@ID4!0.57!20.46!ID4;;chr8:22550982..22550999,-!p1@EGR3!0.57!9.05!EGR3;;chr3:185826286..185826318,-!p5@ETV5!0.57!3.19!ETV5;;chr1:25256439..25256476,-!p3@RUNX3!0.57!2.67!RUNX3;;chr16:29819403..29819442,+!p5@MAZ!0.56!27.04!MAZ;;chr12:3068544..3068597,+!p1@TEAD4!0.56!19.43!TEAD4;;chr17:41277372..41277418,-!p1@BRCA1!0.56!11.62!BRCA1;;chr3:126076264..126076305,-!p2@KLF15!0.56!4.01!KLF15;;chr9:102584241..102584261,+!p4@NR4A3!0.55!4.32!NR4A3;;chr3:32023232..32023273,+!p1@ZNF860!0.55!3.91!ZNF860;;chr20:61493117..61493187,-!p1@TCFL5!0.54!35.99!TCFL5;;chr6:20402102..20402152,+!p1@E2F3!0.54!12.34!E2F3;;chr12:2986275..2986363,-!p1@FOXM1!0.53!30.23!FOXM1;;chr14:55493763..55493824,-!p1@WDHD1!0.53!22.72!WDHD1;;chr16:29819446..29819471,+!p9@MAZ!0.53!8.53!MAZ;;chr2:71127699..71127744,+!p1@VAX2!0.53!5.76!VAX2;;chr16:54964740..54964789,+!p1@IRX5!0.53!3.80!IRX5;;chr12:24715376..24715432,-!p1@SOX5!0.53!3.19!SOX5;;chr12:54422217..54422239,+!p3@HOXC6!0.53!2.37!HOXC6;;chr15:57511589..57511608,+!p4@TCF12!0.53!2.37!TCF12;;chr3:185826855..185826911,-!p1@ETV5!0.52!82.88!ETV5;;chr19:58341656..58341694,+!p5@ZNF587!0.51!2.88!ZNF587;;chr20:42295713..42295738,+!p2@MYBL2!0.50!16.56!MYBL2;;chrY:21906761..21906810,-!p2@KDM5D!0.50!2.16!KDM5D;;chr11:125034586..125034604,+!p3@PKNOX2!0.50!2.16!PKNOX2;;chr1:158979792..158979814,+!p2@IFI16!0.49!26.53!IFI16;;chr9:16870659..16870675,-!p2@BNC2!0.49!2.78!BNC2;;chr4:109090106..109090124,-!p10@LEF1!0.49!2.06!LEF1;;chr16:79634624..79634642,-!p1@MAF!0.48!10.18!MAF;;chr3:126076242..126076257,-!p1@KLF15!0.48!2.67!KLF15;;chr19:1592714..1592762,-!p1@MBD3!0.47!19.64!MBD3;;chr9:99180739..99180752,-!p4@ZNF367!0.47!1.95!ZNF367;;chr2:145277833..145277845,-!p16@ZEB2!0.47!1.95!ZEB2;;chr19:35759824..35759891,+!p1@USF2!0.46!80.72!USF2;;chr3:25469724..25469773,+!p1@RARB!0.46!3.08!RARB;;chr6:34204921..34204939,+!p3@HMGA1!0.45!76.81!HMGA1;;chr8:67525473..67525518,-!p1@MYBL1!0.45!5.14!MYBL1;;chr5:139487608..139487663,+!p3@PURA!0.45!4.83!PURA;;chr16:67197654..67197716,+!p3@HSF4!0.45!1.85!HSF4;;chr17:46806067..46806097,-!p1@HOXB13!0.45!1.85!HOXB13;;chr9:132427883..132427951,+!p2@PRRX2!0.45!1.85!PRRX2;;chr9:16728161..16728185,-!p4@BNC2!0.45!1.85!BNC2;;chr13:41635029..41635044,-!p4@ELF1!0.44!4.63!ELF1;;chr17:46622440..46622477,-!p5@HOXB2!0.44!2.06!HOXB2;;chr7:27190547..27190591,-!p1@HOXA6!0.44!1.75!HOXA6;;chr8:49834430..49834446,-!p5@SNAI2!0.44!1.75!SNAI2;;chr2:145277792..145277808,-!p15@ZEB2!0.44!1.75!ZEB2;;chr3:69986115..69986119,+!p12@MITF!0.44!1.75!MITF;;chr11:695006..695074,-!p1@DEAF1!0.43!37.74!DEAF1;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.43!10.49!TAL1;;chr5:88179017..88179046,-!p2@MEF2C!0.43!9.15!MEF2C;;chr7:150945754..150945789,-!p2@SMARCD3!0.43!6.89!SMARCD3;;chr19:46271505..46271575,-!p2@SIX5!0.43!5.55!SIX5;;chr17:46655730..46655791,-!p1@HOXB4!0.43!5.45!HOXB4;;chr13:46543725..46543747,-!p2@ZC3H13!0.43!3.91!ZC3H13;;chr1:170632285..170632309,+!p1@PRRX1!0.43!2.06!PRRX1;;chr11:128392085..128392232,-!p1@ETS1!0.42!80.00!ETS1;;chr1:158979686..158979745,+!p1@IFI16!0.42!78.97!IFI16;;chr3:69788576..69788648,+!p1@MITF!0.42!12.13!MITF;;chr12:7079780..7079791,-!p2@PHB2!0.42!12.03!PHB2;;chr1:45805872..45805900,+!p2@TOE1!0.42!5.04!TOE1;;chr15:42743341..42743377,-!p3@ZFP106!0.42!3.29!ZFP106;;chr15:96875657..96875760,+!p14@NR2F2!0.42!3.19!NR2F2;;chr22:42269885..42269899,+!p4@SREBF2!0.42!2.88!SREBF2;;chr5:124082279..124082319,-!p3@ZNF608!0.42!2.16!ZNF608;;chr5:3595977..3595999,+!p1@IRX1!0.42!1.65!IRX1;;chr6:10412338..10412345,-!p17@TFAP2A!0.42!1.65!TFAP2A;;chr7:27205136..27205164,-!p1@HOXA9!0.42!1.65!HOXA9;;chr11:65480222..65480241,+!p4@KAT5!0.42!1.65!KAT5;;chr19:17356697..17356762,-!p1@NR2F6!0.41!31.67!NR2F6;;chr1:249153268..249153298,-!p1@ZNF692!0.41!11.83!ZNF692;;chr1:45805813..45805859,+!p1@TOE1!0.41!10.08!TOE1;;chr8:102217679..102217719,-!p2@ZNF706!0.41!7.40!ZNF706;;chr17:20492136..20492165,+!p1@MEIS3P2!0.41!2.98!MEIS3P2;;chr18:3449695..3449712,+!p9@TGIF1!0.41!2.88!TGIF1;;chr16:1031762..1031781,+!p1@SOX8!0.41!1.54!SOX8;;chr17:59477266..59477273,+!p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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000147;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000148;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000710;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002077
|ffid_belonging_in_development=CL:0000133,CL:0000221
|ffid_belonging_in_development=CL:0000133,CL:0000221
|fonse_cell_line=
|fonse_cell_line=
Line 39: Line 42:
|fonse_treatment_closure=FF:0000343,FF:0000730,FF:12641-134G4
|fonse_treatment_closure=FF:0000343,FF:0000730,FF:12641-134G4
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Melanocyte%252c%2520donor1%2520%2528MC%252b1%2529.CNhs12816.12641-134G4.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Melanocyte%252c%2520donor1%2520%2528MC%252b1%2529.CNhs12816.12641-134G4.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Melanocyte%252c%2520donor1%2520%2528MC%252b1%2529.CNhs12816.12641-134G4.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/Melanocyte%252c%2520donor1%2520%2528MC%252b1%2529.CNhs12816.12641-134G4.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/Melanocyte%252c%2520donor1%2520%2528MC%252b1%2529.CNhs12816.12641-134G4.hg38.nobarcode.ctss.bed.gz
|id=FF:12641-134G4
|id=FF:12641-134G4
|is_a=EFO:0002091;;FF:0000730
|is_a=EFO:0002091;;FF:0000730
|is_obsolete=
|is_obsolete=
|library_ids=CNhs12816
|library_id=CNhs12816
|library_id_phase_based=2:CNhs12816
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12641
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12641
|name=Melanocyte, donor1 (MC+1)
|name=Melanocyte, donor1 (MC+1)
|namespace=FANTOM5
|namespace=FANTOM5
Line 48: Line 61:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12816,LSID972,release012,COMPLETED
|profile_hcage=CNhs12816,LSID972,release012,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 63: Line 77:
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|sample_category=time courses
Line 85: Line 99:
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|sample_tissue=skin
|timecourse=Melanocytic_differentiation
|top_motifs=HOX{A6,A7,B6,B7}:2.56578222217;PAX6:2.14961939183;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.05996203256;NR3C1:1.97457264012;ESRRA:1.72823459809;NFE2L1:1.3864946309;TFDP1:1.3535937005;E2F1..5:1.21144097647;SREBF1,2:1.19424407075;POU3F1..4:1.16867051608;XCPE1{core}:1.12254924234;bHLH_family:1.10903685463;PAX8:1.08180688991;EN1,2:1.0535688635;RXR{A,B,G}:1.04264537041;ALX4:1.0227188549;ZNF423:0.966676292599;GFI1:0.943526939435;NR5A1,2:0.859146001534;PBX1:0.83243908499;NFIX:0.735909590872;HOX{A4,D4}:0.735746884761;NKX2-3_NKX2-5:0.666415416403;ELK1,4_GABP{A,B1}:0.662938307732;HES1:0.647914893043;UFEwm:0.621909744415;ZNF143:0.614865585311;PAX1,9:0.551295873074;NKX2-2,8:0.512618737964;EVI1:0.500706436925;CDC5L:0.478498859762;FOXQ1:0.459795255241;NRF1:0.450020633646;NFY{A,B,C}:0.441535645015;PAX5:0.400479220903;SOX{8,9,10}:0.392924030953;TEF:0.364072484554;XBP1:0.289635007321;GTF2A1,2:0.278179542947;ZNF238:0.274319946187;HNF4A_NR2F1,2:0.256708345578;NANOG:0.240685548501;STAT1,3:0.217724273388;ARID5B:0.209056851208;HSF1,2:0.200296117759;PRRX1,2:0.199970485543;ZIC1..3:0.19910593498;TLX1..3_NFIC{dimer}:0.187118240606;YY1:0.175025043463;ONECUT1,2:0.113426898435;TP53:0.107896265457;JUN:0.107119892647;HBP1_HMGB_SSRP1_UBTF:0.102758196918;BREu{core}:0.10172025708;ESR1:0.0866567635895;OCT4_SOX2{dimer}:0.0766190190503;AR:0.0501170408738;SOX5:0.0484390944931;SP1:0.0471700490467;CREB1:0.0411039568688;REST:0.0363390529456;FOXL1:0.0346849543012;LEF1_TCF7_TCF7L1,2:0.0286664136535;LHX3,4:0.0275828095398;KLF4:0.0253877517929;TOPORS:0.0238455458432;NKX3-1:0.0225324228441;ZBTB6:0.0143432529175;MYB:-0.00827094699405;BACH2:-0.0125744848081;GTF2I:-0.0168148483411;STAT5{A,B}:-0.027521677885;TAL1_TCF{3,4,12}:-0.0317087664323;HIC1:-0.0404501521195;FOXM1:-0.0528874173498;VSX1,2:-0.0569197912228;PPARG:-0.071038882939;TEAD1:-0.0713210353698;FOX{F1,F2,J1}:-0.0733879379393;ZFP161:-0.0750807072917;HOX{A5,B5}:-0.0767997689985;PAX4:-0.0895999220667;RORA:-0.0966075572666;TFAP2B:-0.0976409097755;IKZF1:-0.097879065097;RFX2..5_RFXANK_RFXAP:-0.101149139988;EBF1:-0.104326605644;ZBTB16:-0.109661770257;TFCP2:-0.122878586349;EP300:-0.131327049465;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.149370051882;POU6F1:-0.152022261743;HNF1A:-0.162782752836;CUX2:-0.16607573637;ATF4:-0.170911472426;GFI1B:-0.171913063311;FOSL2:-0.173771030458;POU2F1..3:-0.180109497575;ELF1,2,4:-0.18936057347;SOX17:-0.194708022431;RUNX1..3:-0.195240324111;NHLH1,2:-0.198002870833;POU1F1:-0.202036115747;NKX3-2:-0.20707920102;FOS_FOS{B,L1}_JUN{B,D}:-0.207528255989;PAX2:-0.210685713838;SMAD1..7,9:-0.211417077761;ADNP_IRX_SIX_ZHX:-0.231395341525;FOXA2:-0.247535890869;AHR_ARNT_ARNT2:-0.250233967218;RFX1:-0.255623584671;NFIL3:-0.266101085728;MEF2{A,B,C,D}:-0.279414795339;MTF1:-0.279619987836;SOX2:-0.283867889073;CRX:-0.289367517137;DMAP1_NCOR{1,2}_SMARC:-0.292837677481;NR6A1:-0.295142977908;RXRA_VDR{dimer}:-0.300131921004;ZNF148:-0.308236345049;GCM1,2:-0.313434892153;HAND1,2:-0.314725617146;NFE2:-0.320343407002;SPZ1:-0.320872138547;ZNF384:-0.322253538245;SPIB:-0.324325915143;MYBL2:-0.327387283873;NFE2L2:-0.332880125418;LMO2:-0.333005326057;SPI1:-0.336559266803;PRDM1:-0.351208910513;ALX1:-0.357393146495;HMX1:-0.364311643506;FOXP3:-0.388183996867;IKZF2:-0.395493043537;NR1H4:-0.409182346121;RBPJ:-0.424151272064;ATF5_CREB3:-0.432684870532;FOXD3:-0.441110112743;GLI1..3:-0.443186069124;HMGA1,2:-0.445186781575;HLF:-0.483628309764;NKX2-1,4:-0.485184769753;NFKB1_REL_RELA:-0.504858805941;GATA6:-0.51722890684;GATA4:-0.517816303471;ETS1,2:-0.518073314732;GZF1:-0.522755616316;SNAI1..3:-0.539021391601;T:-0.565153847972;EGR1..3:-0.570167156561;HOXA9_MEIS1:-0.570449383508;IRF7:-0.586388184954;MYOD1:-0.586768647557;BPTF:-0.594069197015;HIF1A:-0.59877976764;CEBPA,B_DDIT3:-0.60187580973;TFAP2{A,C}:-0.604264594508;MAZ:-0.613912460743;NFATC1..3:-0.619537689179;MED-1{core}:-0.622411146246;FOX{I1,J2}:-0.625579654322;SRF:-0.631488695657;ZEB1:-0.644507383929;TBP:-0.654531170949;NANOG{mouse}:-0.658293957525;MAFB:-0.674378823665;IRF1,2:-0.680471760949;FOX{D1,D2}:-0.682229795368;TFAP4:-0.683351269704;PAX3,7:-0.687785035376;RREB1:-0.690249396809;AIRE:-0.704071414944;TBX4,5:-0.710008477594;NKX6-1,2:-0.719804906529;STAT2,4,6:-0.720855686955;MTE{core}:-0.724523489172;FOXO1,3,4:-0.729248771673;PITX1..3:-0.774305243968;ATF2:-0.776593167776;CDX1,2,4:-0.784571811923;DBP:-0.794525402908;TGIF1:-0.79568445866;FOXP1:-0.860382199467;ATF6:-0.914866306225;MYFfamily:-0.951991327759;MZF1:-0.996218623853;PDX1:-1.11701586261;PATZ1:-1.16035173883;TLX2:-1.3349499084;FOXN1:-1.35844366919;POU5F1:-1.46672703371
|top_motifs=HOX{A6,A7,B6,B7}:2.56578222217;PAX6:2.14961939183;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.05996203256;NR3C1:1.97457264012;ESRRA:1.72823459809;NFE2L1:1.3864946309;TFDP1:1.3535937005;E2F1..5:1.21144097647;SREBF1,2:1.19424407075;POU3F1..4:1.16867051608;XCPE1{core}:1.12254924234;bHLH_family:1.10903685463;PAX8:1.08180688991;EN1,2:1.0535688635;RXR{A,B,G}:1.04264537041;ALX4:1.0227188549;ZNF423:0.966676292599;GFI1:0.943526939435;NR5A1,2:0.859146001534;PBX1:0.83243908499;NFIX:0.735909590872;HOX{A4,D4}:0.735746884761;NKX2-3_NKX2-5:0.666415416403;ELK1,4_GABP{A,B1}:0.662938307732;HES1:0.647914893043;UFEwm:0.621909744415;ZNF143:0.614865585311;PAX1,9:0.551295873074;NKX2-2,8:0.512618737964;EVI1:0.500706436925;CDC5L:0.478498859762;FOXQ1:0.459795255241;NRF1:0.450020633646;NFY{A,B,C}:0.441535645015;PAX5:0.400479220903;SOX{8,9,10}:0.392924030953;TEF:0.364072484554;XBP1:0.289635007321;GTF2A1,2:0.278179542947;ZNF238:0.274319946187;HNF4A_NR2F1,2:0.256708345578;NANOG:0.240685548501;STAT1,3:0.217724273388;ARID5B:0.209056851208;HSF1,2:0.200296117759;PRRX1,2:0.199970485543;ZIC1..3:0.19910593498;TLX1..3_NFIC{dimer}:0.187118240606;YY1:0.175025043463;ONECUT1,2:0.113426898435;TP53:0.107896265457;JUN:0.107119892647;HBP1_HMGB_SSRP1_UBTF:0.102758196918;BREu{core}:0.10172025708;ESR1:0.0866567635895;OCT4_SOX2{dimer}:0.0766190190503;AR:0.0501170408738;SOX5:0.0484390944931;SP1:0.0471700490467;CREB1:0.0411039568688;REST:0.0363390529456;FOXL1:0.0346849543012;LEF1_TCF7_TCF7L1,2:0.0286664136535;LHX3,4:0.0275828095398;KLF4:0.0253877517929;TOPORS:0.0238455458432;NKX3-1:0.0225324228441;ZBTB6:0.0143432529175;MYB:-0.00827094699405;BACH2:-0.0125744848081;GTF2I:-0.0168148483411;STAT5{A,B}:-0.027521677885;TAL1_TCF{3,4,12}:-0.0317087664323;HIC1:-0.0404501521195;FOXM1:-0.0528874173498;VSX1,2:-0.0569197912228;PPARG:-0.071038882939;TEAD1:-0.0713210353698;FOX{F1,F2,J1}:-0.0733879379393;ZFP161:-0.0750807072917;HOX{A5,B5}:-0.0767997689985;PAX4:-0.0895999220667;RORA:-0.0966075572666;TFAP2B:-0.0976409097755;IKZF1:-0.097879065097;RFX2..5_RFXANK_RFXAP:-0.101149139988;EBF1:-0.104326605644;ZBTB16:-0.109661770257;TFCP2:-0.122878586349;EP300:-0.131327049465;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.149370051882;POU6F1:-0.152022261743;HNF1A:-0.162782752836;CUX2:-0.16607573637;ATF4:-0.170911472426;GFI1B:-0.171913063311;FOSL2:-0.173771030458;POU2F1..3:-0.180109497575;ELF1,2,4:-0.18936057347;SOX17:-0.194708022431;RUNX1..3:-0.195240324111;NHLH1,2:-0.198002870833;POU1F1:-0.202036115747;NKX3-2:-0.20707920102;FOS_FOS{B,L1}_JUN{B,D}:-0.207528255989;PAX2:-0.210685713838;SMAD1..7,9:-0.211417077761;ADNP_IRX_SIX_ZHX:-0.231395341525;FOXA2:-0.247535890869;AHR_ARNT_ARNT2:-0.250233967218;RFX1:-0.255623584671;NFIL3:-0.266101085728;MEF2{A,B,C,D}:-0.279414795339;MTF1:-0.279619987836;SOX2:-0.283867889073;CRX:-0.289367517137;DMAP1_NCOR{1,2}_SMARC:-0.292837677481;NR6A1:-0.295142977908;RXRA_VDR{dimer}:-0.300131921004;ZNF148:-0.308236345049;GCM1,2:-0.313434892153;HAND1,2:-0.314725617146;NFE2:-0.320343407002;SPZ1:-0.320872138547;ZNF384:-0.322253538245;SPIB:-0.324325915143;MYBL2:-0.327387283873;NFE2L2:-0.332880125418;LMO2:-0.333005326057;SPI1:-0.336559266803;PRDM1:-0.351208910513;ALX1:-0.357393146495;HMX1:-0.364311643506;FOXP3:-0.388183996867;IKZF2:-0.395493043537;NR1H4:-0.409182346121;RBPJ:-0.424151272064;ATF5_CREB3:-0.432684870532;FOXD3:-0.441110112743;GLI1..3:-0.443186069124;HMGA1,2:-0.445186781575;HLF:-0.483628309764;NKX2-1,4:-0.485184769753;NFKB1_REL_RELA:-0.504858805941;GATA6:-0.51722890684;GATA4:-0.517816303471;ETS1,2:-0.518073314732;GZF1:-0.522755616316;SNAI1..3:-0.539021391601;T:-0.565153847972;EGR1..3:-0.570167156561;HOXA9_MEIS1:-0.570449383508;IRF7:-0.586388184954;MYOD1:-0.586768647557;BPTF:-0.594069197015;HIF1A:-0.59877976764;CEBPA,B_DDIT3:-0.60187580973;TFAP2{A,C}:-0.604264594508;MAZ:-0.613912460743;NFATC1..3:-0.619537689179;MED-1{core}:-0.622411146246;FOX{I1,J2}:-0.625579654322;SRF:-0.631488695657;ZEB1:-0.644507383929;TBP:-0.654531170949;NANOG{mouse}:-0.658293957525;MAFB:-0.674378823665;IRF1,2:-0.680471760949;FOX{D1,D2}:-0.682229795368;TFAP4:-0.683351269704;PAX3,7:-0.687785035376;RREB1:-0.690249396809;AIRE:-0.704071414944;TBX4,5:-0.710008477594;NKX6-1,2:-0.719804906529;STAT2,4,6:-0.720855686955;MTE{core}:-0.724523489172;FOXO1,3,4:-0.729248771673;PITX1..3:-0.774305243968;ATF2:-0.776593167776;CDX1,2,4:-0.784571811923;DBP:-0.794525402908;TGIF1:-0.79568445866;FOXP1:-0.860382199467;ATF6:-0.914866306225;MYFfamily:-0.951991327759;MZF1:-0.996218623853;PDX1:-1.11701586261;PATZ1:-1.16035173883;TLX2:-1.3349499084;FOXN1:-1.35844366919;POU5F1:-1.46672703371
|xref=
|xref=
}} {{DRAAccessionNumbers
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12641-134G4;search_select_hide=table117:FF:12641-134G4
|DRA_sample_Accession=CAGE@DRS008486
|accession_numbers=DRX008594;DRR009466;DRZ000891;DRZ002276;CAGE
|library_id=CNhs12816
}}
}}

Latest revision as of 18:41, 4 June 2020

Name:Melanocyte, donor1 (MC+1)
Species:Human (Homo sapiens)
Library ID:CNhs12816
Sample type:time courses
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueskin
dev stageNA
sexmale
ageNA
cell typemelanocyte
cell lineNA
companyNA
collaborationSusan Zabierowski (Wistar Institute)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005797
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12816 CAGE DRX008594 DRR009466
Accession ID Hg19

Library idBAMCTSS
CNhs12816 DRZ000891 DRZ002276
Accession ID Hg38

Library idBAMCTSS
CNhs12816 DRZ012241 DRZ013626
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis3.910772e-4
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.37
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.117
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0266
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.155
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0159
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.209
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.132
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0834
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.238
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.41
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0812
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature-0.00596
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.209
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90.594
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.0812
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.0898
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.261
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0.583
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12816

Jaspar motifP-value
MA0002.20.271
MA0003.10.958
MA0004.16.35896e-5
MA0006.10.174
MA0007.10.0359
MA0009.10.282
MA0014.10.302
MA0017.10.833
MA0018.20.708
MA0019.10.174
MA0024.11.87424e-10
MA0025.10.146
MA0027.10.883
MA0028.14.77374e-5
MA0029.10.982
MA0030.10.162
MA0031.10.247
MA0035.20.659
MA0038.10.0137
MA0039.20.0617
MA0040.10.973
MA0041.10.622
MA0042.10.628
MA0043.10.00333
MA0046.10.26
MA0047.20.484
MA0048.10.0269
MA0050.14.79486e-7
MA0051.10.00544
MA0052.10.377
MA0055.11.78543e-6
MA0057.10.0892
MA0058.18.05319e-8
MA0059.14.23202e-5
MA0060.11.22961e-6
MA0061.12.44718e-5
MA0062.22.14772e-4
MA0065.20.375
MA0066.10.225
MA0067.10.0109
MA0068.10.0498
MA0069.10.134
MA0070.10.00158
MA0071.10.633
MA0072.10.681
MA0073.10.613
MA0074.10.188
MA0076.10.001
MA0077.10.395
MA0078.10.591
MA0079.20.597
MA0080.25.08774e-5
MA0081.10.379
MA0083.10.0154
MA0084.10.417
MA0087.10.489
MA0088.10.00397
MA0090.10.553
MA0091.10.922
MA0092.10.72
MA0093.11.86456e-5
MA0099.28.86057e-4
MA0100.10.758
MA0101.10.00594
MA0102.22.75215e-6
MA0103.10.0773
MA0104.22.53429e-5
MA0105.10.00267
MA0106.10.119
MA0107.13.52916e-4
MA0108.20.00474
MA0111.10.869
MA0112.20.857
MA0113.10.861
MA0114.10.334
MA0115.10.856
MA0116.10.459
MA0117.10.178
MA0119.10.91
MA0122.10.721
MA0124.10.151
MA0125.10.0565
MA0131.10.861
MA0135.10.0774
MA0136.17.87767e-4
MA0137.20.115
MA0138.20.559
MA0139.10.85
MA0140.10.609
MA0141.10.0215
MA0142.10.599
MA0143.10.953
MA0144.10.282
MA0145.10.201
MA0146.10.32
MA0147.11.14017e-4
MA0148.10.626
MA0149.10.0426
MA0150.10.00118
MA0152.10.827
MA0153.10.652
MA0154.10.274
MA0155.10.99
MA0156.10.397
MA0157.10.392
MA0159.10.216
MA0160.10.613
MA0162.10.413
MA0163.10.884
MA0164.10.842
MA0258.10.924
MA0259.10.00252



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12816

Novel motifP-value
10.63
100.559
1000.105
1010.131
1020.188
1030.0407
1040.508
1050.0599
1060.00513
1070.0573
1080.775
1090.0387
110.872
1100.0428
1110.849
1120.851
1130.003
1140.233
1150.944
1160.687
1170.463
1180.172
1190.548
120.351
1200.215
1210.805
1220.821
1230.279
1240.711
1250.578
1260.598
1270.627
1280.316
1290.32
130.08
1300.364
1310.0262
1320.499
1330.555
1340.875
1350.736
1360.00259
1370.81
1380.948
1390.0068
140.456
1400.349
1410.4
1420.911
1430.578
1440.558
1450.597
1460.224
1470.428
1480.163
1490.228
150.881
1500.867
1510.568
1520.394
1530.137
1540.143
1550.828
1560.943
1570.68
1580.11
1590.371
160.462
1600.318
1610.934
1620.606
1630.478
1640.883
1650.263
1660.15
1670.946
1680.748
1690.825
170.82
180.403
190.613
20.465
200.259
210.558
220.541
230.133
240.919
250.438
260.582
270.368
280.412
290.0127
30.683
300.142
310.806
320.283
330.455
340.465
350.251
360.863
370.523
380.608
390.766
40.387
400.0909
410.989
420.147
430.693
440.0558
450.0753
460.706
470.778
480.497
490.45
50.45
500.804
510.876
520.149
530.0926
540.875
550.213
560.522
570.242
580.051
590.599
60.38
600.0975
610.775
620.033
630.936
640.751
650.865
660.037
670.228
680.384
690.936
70.634
700.341
710.971
720.251
730.398
740.556
750.614
760.0777
770.574
780.254
790.86
80.616
800.346
810.483
820.367
830.888
840.368
850.341
860.244
870.0127
880.668
890.425
90.519
900.224
910.255
920.012
930.0542
940.805
955.34884e-6
960.439
970.598
980.175
990.0804



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12816


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000075 (columnar/cuboidal epithelial cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000325 (stuff accumulating cell)
0000147 (pigment cell)
0000710 (neurecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
0000148 (melanocyte)

FF: FANTOM5
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000343 (control treatment sample)
0000350 (experimentally modified sample)
0000730 (human melanocyte (MC) sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000221 (ectodermal cell)

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