FF:10703-109H1: Difference between revisions

Latest revision as of 14:34, 3 June 2020

Name:	carcinoid cell line:NCI-H1770
Species:	Human (Homo sapiens)
Library ID:	CNhs11834
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	lung
dev stage	NA
sex	male
age	57
cell type	neuroendocrine cell
cell line	NCI-H1770
company	ATCC
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005215

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11834		CAGE		DRX007842		DRR008714

Accession ID Hg19

Library id		BAM		CTSS
CNhs11834		DRZ000139		DRZ001524

Accession ID Hg38

Library id		BAM		CTSS
CNhs11834		DRZ011489		DRZ012874

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.152
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.572
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0.129
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.0256
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0712
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.186
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0711
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.00903
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.129
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.391
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0.129
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0.129
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.596
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.361
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11834

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	1.93616e-6
MA0003.1	MA0003.1	0.236
MA0004.1	MA0004.1	0.473
MA0006.1	MA0006.1	0.0879
MA0007.1	MA0007.1	0.35
MA0009.1	MA0009.1	0.627
MA0014.1	MA0014.1	0.277
MA0017.1	MA0017.1	0.00558
MA0018.2	MA0018.2	0.0134
MA0019.1	MA0019.1	0.0714
MA0024.1	MA0024.1	3.65904e-8
MA0025.1	MA0025.1	0.3
MA0027.1	MA0027.1	0.783
MA0028.1	MA0028.1	0.18
MA0029.1	MA0029.1	0.905
MA0030.1	MA0030.1	0.229
MA0031.1	MA0031.1	0.019
MA0035.2	MA0035.2	0.73
MA0038.1	MA0038.1	0.00445
MA0039.2	MA0039.2	0.156
MA0040.1	MA0040.1	0.232
MA0041.1	MA0041.1	0.346
MA0042.1	MA0042.1	0.439
MA0043.1	MA0043.1	0.306
MA0046.1	MA0046.1	0.0215
MA0047.2	MA0047.2	0.0172
MA0048.1	MA0048.1	0.598
MA0050.1	MA0050.1	1.67041e-8
MA0051.1	MA0051.1	1.94884e-5
MA0052.1	MA0052.1	0.204
MA0055.1	MA0055.1	0.0596
MA0057.1	MA0057.1	0.307
MA0058.1	MA0058.1	0.444
MA0059.1	MA0059.1	0.233
MA0060.1	MA0060.1	2.05055e-16
MA0061.1	MA0061.1	0.00419
MA0062.2	MA0062.2	0.584
MA0065.2	MA0065.2	0.0726
MA0066.1	MA0066.1	0.478
MA0067.1	MA0067.1	0.624
MA0068.1	MA0068.1	0.57
MA0069.1	MA0069.1	0.93
MA0070.1	MA0070.1	0.484
MA0071.1	MA0071.1	0.686
MA0072.1	MA0072.1	0.664
MA0073.1	MA0073.1	0.0542
MA0074.1	MA0074.1	0.306
MA0076.1	MA0076.1	0.0682
MA0077.1	MA0077.1	0.129
MA0078.1	MA0078.1	0.704
MA0079.2	MA0079.2	0.232
MA0080.2	MA0080.2	1.42507e-10
MA0081.1	MA0081.1	0.00849
MA0083.1	MA0083.1	4.26304e-5
MA0084.1	MA0084.1	0.386
MA0087.1	MA0087.1	0.409
MA0088.1	MA0088.1	0.0951
MA0090.1	MA0090.1	0.00689
MA0091.1	MA0091.1	0.576
MA0092.1	MA0092.1	0.184
MA0093.1	MA0093.1	0.437
MA0099.2	MA0099.2	6.47075e-16
MA0100.1	MA0100.1	0.133
MA0101.1	MA0101.1	0.00266
MA0102.2	MA0102.2	0.00489
MA0103.1	MA0103.1	0.0315
MA0104.2	MA0104.2	0.0176
MA0105.1	MA0105.1	0.0141
MA0106.1	MA0106.1	0.497
MA0107.1	MA0107.1	2.57504e-4
MA0108.2	MA0108.2	0.0752
MA0111.1	MA0111.1	0.749
MA0112.2	MA0112.2	0.00413
MA0113.1	MA0113.1	0.0832
MA0114.1	MA0114.1	0.142
MA0115.1	MA0115.1	0.29
MA0116.1	MA0116.1	0.0614
MA0117.1	MA0117.1	0.645
MA0119.1	MA0119.1	0.706
MA0122.1	MA0122.1	0.309
MA0124.1	MA0124.1	0.372
MA0125.1	MA0125.1	0.45
MA0131.1	MA0131.1	0.341
MA0135.1	MA0135.1	0.463
MA0136.1	MA0136.1	3.04869e-9
MA0137.2	MA0137.2	0.00521
MA0138.2	MA0138.2	0.238
MA0139.1	MA0139.1	0.411
MA0140.1	MA0140.1	0.571
MA0141.1	MA0141.1	0.188
MA0142.1	MA0142.1	0.643
MA0143.1	MA0143.1	0.186
MA0144.1	MA0144.1	1.67769e-4
MA0145.1	MA0145.1	0.0581
MA0146.1	MA0146.1	0.218
MA0147.1	MA0147.1	0.0329
MA0148.1	MA0148.1	0.0942
MA0149.1	MA0149.1	0.766
MA0150.1	MA0150.1	0.00132
MA0152.1	MA0152.1	0.718
MA0153.1	MA0153.1	0.012
MA0154.1	MA0154.1	0.117
MA0155.1	MA0155.1	0.165
MA0156.1	MA0156.1	1.36352e-6
MA0157.1	MA0157.1	0.0363
MA0159.1	MA0159.1	0.105
MA0160.1	MA0160.1	0.126
MA0162.1	MA0162.1	0.299
MA0163.1	MA0163.1	0.00741
MA0164.1	MA0164.1	0.864
MA0258.1	MA0258.1	0.274
MA0259.1	MA0259.1	0.0335

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11834

Novel motif	Logo	P-value
1	1	0.902
10	10	0.29
100	100	0.196
101	101	0.823
102	102	0.531
103	103	0.0445
104	104	0.507
105	105	0.781
106	106	1.97329e-4
107	107	0.0166
108	108	0.799
109	109	0.399
11	11	0.657
110	110	0.772
111	111	0.911
112	112	0.106
113	113	0.672
114	114	0.227
115	115	0.98
116	116	0.892
117	117	0.543
118	118	0.845
119	119	0.425
12	12	0.62
120	120	0.135
121	121	0.465
122	122	0.783
123	123	2.41649e-4
124	124	0.477
125	125	0.883
126	126	0.194
127	127	0.252
128	128	0.0378
129	129	0.607
13	13	0.726
130	130	0.529
131	131	0.623
132	132	0.805
133	133	0.0994
134	134	0.907
135	135	0.257
136	136	0.796
137	137	0.167
138	138	0.53
139	139	0.905
14	14	0.478
140	140	0.272
141	141	0.438
142	142	0.933
143	143	0.108
144	144	0.573
145	145	0.776
146	146	0.721
147	147	0.996
148	148	0.0702
149	149	0.163
15	15	0.438
150	150	0.181
151	151	0.386
152	152	0.00901
153	153	0.552
154	154	0.503
155	155	0.591
156	156	0.694
157	157	0.306
158	158	0.868
159	159	0.46
16	16	0.135
160	160	0.372
161	161	0.911
162	162	0.434
163	163	0.126
164	164	0.263
165	165	0.402
166	166	0.996
167	167	0.693
168	168	0.032
169	169	0.0654
17	17	0.191
18	18	0.22
19	19	0.134
2	2	0.163
20	20	0.385
21	21	0.527
22	22	0.0567
23	23	0.0101
24	24	0.155
25	25	0.859
26	26	0.518
27	27	0.078
28	28	0.765
29	29	0.486
3	3	0.349
30	30	0.155
31	31	0.289
32	32	0.00366
33	33	0.44
34	34	0.276
35	35	0.606
36	36	0.249
37	37	0.0693
38	38	0.77
39	39	0.314
4	4	0.306
40	40	0.143
41	41	0.0885
42	42	0.805
43	43	0.146
44	44	0.415
45	45	0.246
46	46	0.432
47	47	0.685
48	48	0.898
49	49	0.859
5	5	0.301
50	50	0.46
51	51	0.284
52	52	0.103
53	53	0.434
54	54	0.208
55	55	0.0753
56	56	0.662
57	57	0.356
58	58	0.194
59	59	0.0649
6	6	0.643
60	60	0.0111
61	61	0.485
62	62	0.0407
63	63	0.686
64	64	0.537
65	65	0.3
66	66	0.0735
67	67	0.588
68	68	0.905
69	69	0.889
7	7	0.536
70	70	0.154
71	71	0.167
72	72	0.0914
73	73	0.0141
74	74	0.455
75	75	0.236
76	76	0.963
77	77	0.2
78	78	0.572
79	79	0.15
8	8	0.436
80	80	0.0602
81	81	0.516
82	82	0.528
83	83	0.239
84	84	0.481
85	85	0.00843
86	86	0.0945
87	87	0.292
88	88	0.765
89	89	0.0249
9	9	0.0279
90	90	0.981
91	91	0.354
92	92	0.145
93	93	0.396
94	94	0.358
95	95	0.35
96	96	0.829
97	97	0.851
98	98	0.713
99	99	0.864

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11834

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100729 carcinoid cell sample
FF:0103764 NCI cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
3119 (gastrointestinal system cancer)
1115 (sarcoma)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100453 (fibroblast cell line sample)
0100400 (sarcoma cell line sample)
0101533 (gastrointestinal cancer cell sample)
0100460 (fibrosarcoma cell line sample)
0100729 (carcinoid cell sample)
0103764 (NCI cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007737
+|DRA_sample_Accession=CAGE@SAMD00005215
-|accession_numbers=CAGE;DRX007842;DRR008714;DRZ000139;DRZ001524
+|accession_numbers=CAGE;DRX007842;DRR008714;DRZ000139;DRZ001524;DRZ011489;DRZ012874
 |ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:16080659..16080685,+!p1@MYCN!2.23!168.23!MYCN;;chr13:72441315..72441454,-!p1@DACH1!2.02!201.33!DACH1;;chr20:20348740..20348757,+!p1@INSM1!1.96!90.32!INSM1;;chr5:145718398..145718410,+!p1@POU4F3!1.84!67.91!POU4F3;;chr1:160336851..160336868,+!p1@NHLH1!1.80!62.74!NHLH1;;chr5:170736243..170736279,+!p1@TLX3!1.62!40.68!TLX3;;chr2:5832508..5832524,+!p1@SOX11!1.60!38.96!SOX11;;chr5:158526917..158526932,-!p1@EBF1!1.56!85.50!EBF1;;chr2:16080635..16080650,+!p4@MYCN!1.52!32.06!MYCN;;chr1:23857325..23857416,-!p2@E2F2!1.51!36.20!E2F2;;chr18:55102628..55102646,+!p2@ONECUT2!1.51!31.72!ONECUT2;;chr18:55102598..55102623,+!p1@ONECUT2!1.47!28.27!ONECUT2;;chr13:79177674..79177701,-!p1@POU4F1!1.47!28.27!POU4F1;;chr1:216896752..216896778,-!p1@ESRRG!1.42!25.51!ESRRG;;chr4:94749897..94749909,+!p1@ATOH1!1.42!25.51!ATOH1;;chr17:48072574..48072597,-!p1@DLX3!1.42!25.17!DLX3;;chr15:53082521..53082549,-!p1@ONECUT1!1.40!24.13!ONECUT1;;chr2:239148671..239148686,-!p1@HES6!1.38!82.05!HES6;;chr11:31832658..31832681,-!p1@PAX6!1.38!23.10!PAX6;;chr13:72441074..72441172,-!p2@DACH1!1.38!23.10!DACH1;;chrX:85403445..85403479,+!p2@DACH2!1.38!23.10!DACH2;;chr2:16081912..16081931,+!p2@MYCN!1.37!22.41!MYCN;;chr19:50432453..50432468,+!p1@ATF5!1.34!1115.24!ATF5;;chr12:54785074..54785122,-!p2@ZNF385A!1.33!31.37!ZNF385A;;chr10:131762504..131762555,-!p1@EBF3!1.32!20.00!EBF3;;chr3:181429704..181429722,+!p1@SOX2!1.32!20.00!SOX2;;chr21:47063625..47063658,+!p1@PCBP3!1.31!83.77!PCBP3;;chr7:27213893..27213954,-!p1@HOXA10!1.31!19.31!HOXA10;;chr5:50679228..50679288,+!p1@ISL1!1.30!18.96!ISL1;;chr2:16080823..16080836,+!p5@MYCN!1.28!18.27!MYCN;;chr1:116383738..116383752,-!p1@NHLH2!1.28!18.27!NHLH2;;chr2:16082094..16082106,+!p7@MYCN!1.28!17.93!MYCN;;chr11:16133391..16133439,-!p6@SOX6!1.25!16.89!SOX6;;chr2:95963052..95963106,+!p1@KCNIP3!1.23!15.86!KCNIP3;;chr5:145718596..145718607,+!p2@POU4F3!1.23!15.86!POU4F3;;chr7:27190547..27190591,-!p1@HOXA6!1.21!15.17!HOXA6;;chr2:182545234..182545252,-!p1@NEUROD1!1.21!15.17!NEUROD1;;chr8:25902876..25902936,-!p1@EBF2!1.20!14.82!EBF2;;chr2:166326200..166326216,+!p1@CSRNP3!1.19!21.37!CSRNP3;;chr7:156803329..156803362,-!p1@MNX1!1.19!14.48!MNX1;;chr2:60780753..60780800,-!p1@BCL11A!1.17!67.57!BCL11A;;chr1:151032922..151032951,+!p2@MLLT11!1.16!22.41!MLLT11;;chrX:84498989..84499003,+!p1@ZNF711!1.16!18.62!ZNF711;;chr6:10412392..10412409,-!p4@TFAP2A!1.16!15.51!TFAP2A;;chr8:53166899..53166914,-!p3@ST18!1.16!13.44!ST18;;chr3:181429741..181429767,+!p2@SOX2!1.16!13.44!SOX2;;chr3:18486354..18486377,-!p2@SATB1!1.15!16.55!SATB1;;chr12:54785054..54785072,-!p4@ZNF385A!1.15!14.82!ZNF385A;;chr20:32274179..32274213,-!p1@E2F1!1.14!84.12!E2F1;;chr17:48046543..48046575,+!p2@DLX4!1.14!12.76!DLX4;;chrX:84499081..84499115,+!p2@ZNF711!1.12!17.93!ZNF711;;chr17:37764128..37764258,-!p1@NEUROD2!1.12!12.07!NEUROD2;;chr1:151032860..151032918,+!p1@MLLT11!1.11!141.00!MLLT11;;chr2:60780607..60780624,-!p2@BCL11A!1.11!36.20!BCL11A;;chr1:23857698..23857733,-!p1@E2F2!1.10!21.37!E2F2;;chr9:126773880..126773895,+!p2@LHX2!1.08!11.03!LHX2;;chr2:185463247..185463263,+!p1@ZNF804A!1.07!19.31!ZNF804A;;chr20:62680984..62680999,-!p1@SOX18!1.07!14.48!SOX18;;chr18:6414884..6414942,-!p1@L3MBTL4!1.06!13.10!L3MBTL4;;chr10:48355030..48355090,+!p1@ZNF488!1.05!13.10!ZNF488;;chr2:16082155..16082169,+!p3@MYCN!1.04!10.00!MYCN;;chr16:67197654..67197716,+!p3@HSF4!1.03!9.65!HSF4;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.01!9.31!POU3F3;;chr8:77593474..77593612,+!p1@ZFHX4!1.00!39.30!ZFHX4;;chr1:151032782..151032801,+!p4@MLLT11!1.00!18.27!MLLT11;;chr11:63684602..63684664,-!p1@RCOR2!1.00!17.93!RCOR2;;chr13:72441506..72441562,-!p3@DACH1!1.00!8.96!DACH1;;chr1:216896780..216896800,-!p2@ESRRG!1.00!8.96!ESRRG;;chr1:3569072..3569093,+!p1@TP73!1.00!8.96!TP73;;chr5:170736216..170736238,+!p2@TLX3!0.98!8.62!TLX3;;chr3:157824202..157824211,-!p3@SHOX2!0.98!8.62!SHOX2;;chr9:126774018..126774055,+!p1@LHX2!0.97!8.27!LHX2;;chr9:114287433..114287513,+!p1@ZNF483!0.96!21.72!ZNF483;;chr7:35293685..35293718,-!p1@TBX20!0.95!7.93!TBX20;;chr7:73038839..73038862,-!p1@MLXIPL!0.95!7.93!MLXIPL;;chr1:6479968..6479986,-!p1@HES2!0.95!7.93!HES2;;chr15:53082587..53082599,-!p2@ONECUT1!0.95!7.93!ONECUT1;;chr18:53089453..53089482,-!p11@TCF4!0.95!7.93!TCF4;;chr6:10412600..10412637,-!p1@TFAP2A!0.94!13.10!TFAP2A;;chr1:41827095..41827155,+!p1@FOXO6!0.93!10.34!FOXO6;;chr11:8102819..8102845,+!p3@TUB!0.93!9.31!TUB;;chr2:176994408..176994492,+!p1@HOXD8!0.93!7.58!HOXD8;;chr5:176738887..176738934,-!p1@MXD3!0.92!51.02!MXD3;;chr9:14314131..14314147,-!p2@NFIB!0.92!42.40!NFIB;;chr11:8102749..8102769,+!p2@TUB!0.92!14.48!TUB;;chr2:2334997..2335053,-!p1@MYT1L!0.92!7.24!MYT1L;;chr7:27196267..27196311,-!p1@HOXA7!0.92!7.24!HOXA7;;chr7:1272522..1272537,+!p2@UNCX!0.90!6.89!UNCX;;chr2:177016272..177016286,+!p2@HOXD4!0.90!6.89!HOXD4;;chr19:38720294..38720348,-!p1@DPF1!0.88!8.27!DPF1;;chr1:3607228..3607250,+!p8@TP73!0.88!6.55!TP73;;chr15:76629123..76629151,+!p1@ISL2!0.87!7.24!ISL2;;chr1:47903709..47903764,+!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@@ Line 40: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/carcinoid%2520cell%2520line%253aNCI-H1770.CNhs11834.10703-109H1.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/carcinoid%2520cell%2520line%253aNCI-H1770.CNhs11834.10703-109H1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/carcinoid%2520cell%2520line%253aNCI-H1770.CNhs11834.10703-109H1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/carcinoid%2520cell%2520line%253aNCI-H1770.CNhs11834.10703-109H1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/carcinoid%2520cell%2520line%253aNCI-H1770.CNhs11834.10703-109H1.hg38.nobarcode.ctss.bed.gz
 |id=FF:10703-109H1
 |is_a=EFO:0002091;;FF:0000210;;FF:0100729;;FF:0103764
 |is_obsolete=
 |library_id=CNhs11834
-|library_ids=CNhs11834
+|library_id_phase_based=2:CNhs11834
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10703
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10703
 |name=carcinoid cell line:NCI-H1770
 |namespace=FANTOM5
@@ Line 50: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11834,LSID829,release010,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10703-109H1;search_select_hide=table117:FF:10703-109H1
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FF:10703-109H1: Difference between revisions

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Latest revision as of 14:34, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0