FF:11750-123G4: Difference between revisions

Latest revision as of 18:17, 4 June 2020

Name:	mesenchymal precursor cell - bone marrow, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs12366
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	bone marrow
dev stage	NA
sex	NA
age	NA
cell type	mesenchymal precursor cell
cell line	NA
company	NA
collaboration	Claudio Schneider LNCIB
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005856

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12366		CAGE		DRX008548		DRR009420

Accession ID Hg19

Library id		BAM		CTSS
CNhs12366		DRZ000845		DRZ002230

Accession ID Hg38

Library id		BAM		CTSS
CNhs12366		DRZ012195		DRZ013580

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0685
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.141
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.195
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0838
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.118
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.0753
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.551
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.137
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0791
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.14
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.506
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.245
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.14
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0103
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.195
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.0753
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.0363
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.362
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0.447
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.163
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.0753
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.289
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.195
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.14
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.245
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.367
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.00798
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.924
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12366

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.955
MA0003.1	MA0003.1	0.886
MA0004.1	MA0004.1	0.535
MA0006.1	MA0006.1	0.378
MA0007.1	MA0007.1	0.283
MA0009.1	MA0009.1	0.838
MA0014.1	MA0014.1	0.823
MA0017.1	MA0017.1	0.436
MA0018.2	MA0018.2	0.889
MA0019.1	MA0019.1	0.183
MA0024.1	MA0024.1	3.06237e-6
MA0025.1	MA0025.1	0.00545
MA0027.1	MA0027.1	0.929
MA0028.1	MA0028.1	0.00471
MA0029.1	MA0029.1	0.431
MA0030.1	MA0030.1	0.106
MA0031.1	MA0031.1	0.418
MA0035.2	MA0035.2	3.14237e-4
MA0038.1	MA0038.1	0.144
MA0039.2	MA0039.2	0.00118
MA0040.1	MA0040.1	0.378
MA0041.1	MA0041.1	0.354
MA0042.1	MA0042.1	0.292
MA0043.1	MA0043.1	0.879
MA0046.1	MA0046.1	0.501
MA0047.2	MA0047.2	0.646
MA0048.1	MA0048.1	0.209
MA0050.1	MA0050.1	0.766
MA0051.1	MA0051.1	0.91
MA0052.1	MA0052.1	0.0472
MA0055.1	MA0055.1	0.574
MA0057.1	MA0057.1	0.712
MA0058.1	MA0058.1	0.125
MA0059.1	MA0059.1	0.338
MA0060.1	MA0060.1	5.68289e-7
MA0061.1	MA0061.1	0.513
MA0062.2	MA0062.2	9.35016e-8
MA0065.2	MA0065.2	0.0486
MA0066.1	MA0066.1	0.613
MA0067.1	MA0067.1	0.121
MA0068.1	MA0068.1	0.0807
MA0069.1	MA0069.1	0.171
MA0070.1	MA0070.1	0.679
MA0071.1	MA0071.1	0.185
MA0072.1	MA0072.1	0.626
MA0073.1	MA0073.1	0.883
MA0074.1	MA0074.1	0.123
MA0076.1	MA0076.1	7.06473e-4
MA0077.1	MA0077.1	0.0282
MA0078.1	MA0078.1	0.334
MA0079.2	MA0079.2	0.924
MA0080.2	MA0080.2	5.89137e-8
MA0081.1	MA0081.1	0.0406
MA0083.1	MA0083.1	2.89226e-7
MA0084.1	MA0084.1	0.546
MA0087.1	MA0087.1	0.91
MA0088.1	MA0088.1	0.18
MA0090.1	MA0090.1	2.80814e-4
MA0091.1	MA0091.1	0.395
MA0092.1	MA0092.1	0.824
MA0093.1	MA0093.1	0.337
MA0099.2	MA0099.2	9.45473e-9
MA0100.1	MA0100.1	0.569
MA0101.1	MA0101.1	0.194
MA0102.2	MA0102.2	0.912
MA0103.1	MA0103.1	2.16274e-4
MA0104.2	MA0104.2	0.781
MA0105.1	MA0105.1	0.913
MA0106.1	MA0106.1	0.299
MA0107.1	MA0107.1	0.108
MA0108.2	MA0108.2	0.00565
MA0111.1	MA0111.1	0.0669
MA0112.2	MA0112.2	0.0574
MA0113.1	MA0113.1	0.952
MA0114.1	MA0114.1	0.121
MA0115.1	MA0115.1	0.127
MA0116.1	MA0116.1	0.391
MA0117.1	MA0117.1	0.0935
MA0119.1	MA0119.1	0.375
MA0122.1	MA0122.1	0.796
MA0124.1	MA0124.1	0.903
MA0125.1	MA0125.1	0.238
MA0131.1	MA0131.1	0.114
MA0135.1	MA0135.1	0.732
MA0136.1	MA0136.1	9.31077e-8
MA0137.2	MA0137.2	0.15
MA0138.2	MA0138.2	0.687
MA0139.1	MA0139.1	0.862
MA0140.1	MA0140.1	0.0162
MA0141.1	MA0141.1	0.892
MA0142.1	MA0142.1	0.32
MA0143.1	MA0143.1	0.665
MA0144.1	MA0144.1	0.193
MA0145.1	MA0145.1	0.757
MA0146.1	MA0146.1	0.0701
MA0147.1	MA0147.1	0.933
MA0148.1	MA0148.1	0.333
MA0149.1	MA0149.1	0.677
MA0150.1	MA0150.1	0.0192
MA0152.1	MA0152.1	5.35396e-4
MA0153.1	MA0153.1	0.632
MA0154.1	MA0154.1	0.498
MA0155.1	MA0155.1	0.891
MA0156.1	MA0156.1	3.78046e-7
MA0157.1	MA0157.1	0.572
MA0159.1	MA0159.1	0.399
MA0160.1	MA0160.1	0.508
MA0162.1	MA0162.1	0.407
MA0163.1	MA0163.1	0.785
MA0164.1	MA0164.1	0.99
MA0258.1	MA0258.1	0.498
MA0259.1	MA0259.1	0.565

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12366

Novel motif	Logo	P-value
1	1	0.85
10	10	0.397
100	100	0.541
101	101	0.248
102	102	0.034
103	103	0.376
104	104	0.987
105	105	0.718
106	106	0.921
107	107	0.52
108	108	0.714
109	109	0.941
11	11	0.846
110	110	0.245
111	111	0.565
112	112	0.886
113	113	0.00144
114	114	0.379
115	115	0.889
116	116	0.666
117	117	0.962
118	118	0.47
119	119	0.703
12	12	0.441
120	120	0.682
121	121	0.985
122	122	0.0615
123	123	1.48386e-5
124	124	0.213
125	125	0.862
126	126	0.741
127	127	0.661
128	128	0.372
129	129	0.603
13	13	0.793
130	130	0.473
131	131	0.279
132	132	0.786
133	133	0.499
134	134	0.0762
135	135	0.483
136	136	0.641
137	137	0.971
138	138	0.761
139	139	0.816
14	14	0.579
140	140	0.0555
141	141	0.0914
142	142	0.505
143	143	0.465
144	144	0.356
145	145	0.577
146	146	0.617
147	147	0.0415
148	148	0.787
149	149	0.237
15	15	0.939
150	150	0.672
151	151	0.77
152	152	0.761
153	153	0.282
154	154	0.581
155	155	0.0157
156	156	0.207
157	157	0.167
158	158	0.0969
159	159	0.102
16	16	0.067
160	160	0.45
161	161	0.171
162	162	0.806
163	163	0.73
164	164	0.164
165	165	0.407
166	166	0.016
167	167	0.978
168	168	0.646
169	169	0.247
17	17	0.872
18	18	0.118
19	19	0.0346
2	2	0.677
20	20	0.834
21	21	0.547
22	22	0.295
23	23	0.0845
24	24	0.33
25	25	0.291
26	26	0.531
27	27	0.758
28	28	0.354
29	29	0.233
3	3	0.846
30	30	0.347
31	31	0.807
32	32	1.34982e-6
33	33	0.468
34	34	0.268
35	35	0.824
36	36	0.033
37	37	0.0301
38	38	0.277
39	39	0.185
4	4	0.0149
40	40	0.0435
41	41	0.881
42	42	0.409
43	43	0.752
44	44	0.849
45	45	0.618
46	46	0.666
47	47	0.0601
48	48	0.0958
49	49	0.267
5	5	0.779
50	50	0.48
51	51	0.538
52	52	0.848
53	53	0.0518
54	54	0.852
55	55	0.0598
56	56	0.903
57	57	0.996
58	58	0.219
59	59	0.918
6	6	0.404
60	60	0.665
61	61	0.711
62	62	0.52
63	63	0.295
64	64	0.413
65	65	0.769
66	66	0.372
67	67	0.969
68	68	0.953
69	69	0.77
7	7	0.472
70	70	0.938
71	71	0.602
72	72	0.851
73	73	0.129
74	74	0.318
75	75	0.963
76	76	0.793
77	77	0.263
78	78	0.0474
79	79	0.0118
8	8	0.77
80	80	0.594
81	81	0.969
82	82	0.751
83	83	0.972
84	84	0.946
85	85	0.303
86	86	0.261
87	87	0.939
88	88	0.676
89	89	0.0857
9	9	0.317
90	90	0.775
91	91	0.533
92	92	0.0909
93	93	0.536
94	94	0.967
95	95	0.67
96	96	0.929
97	97	0.29
98	98	0.322
99	99	0.879

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12366

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000269 human mesenchymal precursor cell of bone marrow sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002092 (bone marrow cell)
0002540 (mesenchymal stem cell of the bone marrow)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002371 (bone marrow)
0001474 (bone element)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004765 (skeletal element)
0010317 (germ layer / neural crest derived structure)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0002390 (hematopoietic system)
0002193 (hemolymphoid system)
0002405 (immune system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000269 (human mesenchymal precursor cell of bone marrow sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008440
+|DRA_sample_Accession=CAGE@SAMD00005856
-|accession_numbers=CAGE;DRX008548;DRR009420;DRZ000845;DRZ002230
+|accession_numbers=CAGE;DRX008548;DRR009420;DRZ000845;DRZ002230;DRZ012195;DRZ013580
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004765,UBERON:0010317,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034,CL:0002092,CL:0002540
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr1:170632285..170632309,+!p1@PRRX1!1.66!50.95!PRRX1;;chr6:45296048..45296082,+!p1@RUNX2!1.64!48.49!RUNX2;;chr6:1312325..1312340,+!p1@FOXQ1!1.62!64.59!FOXQ1;;chr19:45971246..45971265,+!p1@FOSB!1.54!600.98!FOSB;;chr12:52445218..52445237,+!p1@NR4A1!1.54!408.54!NR4A1;;chr2:157189180..157189290,-!p1@NR4A2!1.52!161.56!NR4A2;;chr1:170633348..170633399,+!p2@PRRX1!1.51!41.86!PRRX1;;chr19:54041669..54041697,+!p2@ZNF331!1.46!27.84!ZNF331;;chr19:13134772..13134822,+!p2@NFIX!1.44!39.02!NFIX;;chr19:54058073..54058088,+!p1@ZNF331!1.42!25.57!ZNF331;;chr15:42749722..42749739,-!p2@ZFP106!1.40!42.99!ZFP106;;chr7:14029283..14029311,-!p1@ETV1!1.38!118.57!ETV1;;chr7:19157248..19157268,-!p1@TWIST1!1.37!61.18!TWIST1;;chr4:26322267..26322334,+!p3@RBPJ!1.35!50.76!RBPJ;;chr4:26323870..26323885,+!p13@RBPJ!1.31!19.51!RBPJ;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.30!18.94!HOXC5;;chr7:14028488..14028516,-!p2@ETV1!1.29!20.46!ETV1;;chr3:5021268..5021282,+!p4@BHLHE40!1.28!36.55!BHLHE40;;chr4:174451370..174451387,-!p1@HAND2!1.28!18.18!HAND2;;chr6:1610293..1610310,+!p1@FOXC1!1.27!28.98!FOXC1;;chr1:170633262..170633285,+!p3@PRRX1!1.26!19.51!PRRX1;;chr8:22550982..22550999,-!p1@EGR3!1.25!46.40!EGR3;;chr16:54320617..54320643,-!p3@IRX3!1.25!21.59!IRX3;;chr9:102584159..102584174,+!p2@NR4A3!1.24!29.36!NR4A3;;chr3:21792585..21792625,-!p2@ZNF385D!1.22!17.43!ZNF385D;;chr8:116673894..116673913,-!p12@TRPS1!1.20!14.96!TRPS1;;chr4:174450089..174450153,-!p2@HAND2!1.18!14.21!HAND2;;chr3:21792682..21792720,-!p1@ZNF385D!1.17!13.64!ZNF385D;;chr2:45236540..45236577,-!p1@SIX2!1.15!13.07!SIX2;;chr12:54378923..54378966,+!p1@HOXC10!1.14!12.88!HOXC10;;chr14:24837368..24837401,+!p1@NFATC4!1.13!29.17!NFATC4;;chr16:54320646..54320672,-!p2@IRX3!1.13!19.13!IRX3;;chr3:157823517..157823562,-!p1@SHOX2!1.13!13.45!SHOX2;;chr21:36260773..36260804,-!p7@RUNX1!1.12!16.48!RUNX1;;chr14:75745523..75745537,+!p1@FOS!1.10!1389.27!FOS;;chr7:96654133..96654150,-!p1@DLX5!1.10!11.55!DLX5;;chr7:19157043..19157088,-!p2@TWIST1!1.08!27.84!TWIST1;;chr12:54380404..54380433,+!p3@HOXC10!1.07!10.80!HOXC10;;chr4:26323764..26323821,+!p15@RBPJ!1.06!10.42!RBPJ;;chr8:49833948..49833973,-!p2@SNAI2!1.03!62.12!SNAI2;;chr2:102091566..102091581,-!p1@RFX8!1.02!9.47!RFX8;;chr9:102584262..102584276,+!p1@NR4A3!1.01!21.02!NR4A3;;chr20:50179368..50179392,-!p2@NFATC2!1.01!11.93!NFATC2;;chr7:44143925..44143970,+!p1@AEBP1!1.00!204.56!AEBP1;;chr7:15726296..15726315,-!p1@MEOX2!1.00!8.90!MEOX2;;chr12:54380036..54380091,+!p4@HOXC10!1.00!8.90!HOXC10;;chr12:52437488..52437507,+!p2@NR4A1!0.99!8.71!NR4A1;;chr5:137804484..137804498,+!p2@EGR1!0.98!34.85!EGR1;;chr12:66218255..66218304,+!p3@HMGA2!0.98!23.49!HMGA2;;chr14:75746722..75746777,+!p2@FOS!0.98!10.99!FOS;;chr12:66218598..66218645,+!p2@HMGA2!0.96!39.02!HMGA2;;chr16:54320101..54320125,-!p4@IRX3!0.96!11.74!IRX3;;chr4:26324474..26324501,+!p16@RBPJ!0.96!8.14!RBPJ;;chr11:46299199..46299233,+!p1@CREB3L1!0.95!42.05!CREB3L1;;chr2:19558373..19558392,-!p1@OSR1!0.95!22.16!OSR1;;chr4:26322373..26322393,+!p4@RBPJ!0.95!11.93!RBPJ;;chr1:44513995..44514031,+!p1@KLF17!0.95!7.95!KLF17;;chr2:200322654..200322707,-!p2@SATB2!0.94!11.36!SATB2;;chr8:25902876..25902936,-!p1@EBF2!0.94!7.77!EBF2;;chr16:54320675..54320715,-!p1@IRX3!0.93!16.48!IRX3;;chr7:44143978..44143989,+!p2@AEBP1!0.93!14.21!AEBP1;;chr4:26322673..26322684,+!p11@RBPJ!0.93!7.58!RBPJ;;chrY:21906594..21906622,-!p1@KDM5D!0.93!7.58!KDM5D;;chr8:49833978..49833996,-!p1@SNAI2!0.91!153.23!SNAI2;;chr11:65686802..65686818,+!p6@DRAP1!0.90!12.31!DRAP1;;chr16:54320322..54320343,-!p7@IRX3!0.90!7.01!IRX3;;chr11:65686732..65686756,+!p2@DRAP1!0.89!30.12!DRAP1;;chr21:36260295..36260310,-!p3@RUNX1!0.89!11.17!RUNX1;;chr7:15726243..15726293,-!p2@MEOX2!0.89!6.82!MEOX2;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.89!6.82!HOXC5;;chr7:96654026..96654061,-!p2@DLX5!0.87!6.44!DLX5;;chr11:65687362..65687436,+!p3@DRAP1!0.86!30.12!DRAP1;;chr7:15725757..15725828,-!p5@MEOX2!0.86!6.25!MEOX2;;chr5:158526917..158526932,-!p1@EBF1!0.85!15.72!EBF1;;chr7:27196267..27196311,-!p1@HOXA7!0.85!6.06!HOXA7;;chr1:170632250..170632277,+!p7@PRRX1!0.85!6.06!PRRX1;;chr3:21792631..21792665,-!p3@ZNF385D!0.85!6.06!ZNF385D;;chr10:35484053..35484076,+!p1@CREM!0.84!15.34!CREM;;chr3:21792790..21792824,-!p4@ZNF385D!0.84!5.87!ZNF385D;;chr1:170632959..170632987,+!p4@PRRX1!0.83!6.44!PRRX1;;chr17:59477233..59477263,+!p1@TBX2!0.82!18.56!TBX2;;chr7:27205106..27205134,-!p2@HOXA9!0.82!5.68!HOXA9;;chr3:141087454..141087465,+!p19@ZBTB38!0.82!5.68!ZBTB38;;chr12:53614115..53614154,-!p1@RARG!0.81!31.06!RARG;;chr10:131762504..131762555,-!p1@EBF3!0.81!5.49!EBF3;;chr3:193853927..193853944,+!p1@HES1!0.80!189.21!HES1;;chr1:158979872..158979898,+!p3@IFI16!0.80!17.61!IFI16;;chr2:46612334..46612349,+!p6@EPAS1!0.80!7.20!EPAS1;;chrY:2803415..2803468,+!p1@ZFY!0.80!5.30!ZFY;;chr7:27213893..27213954,-!p1@HOXA10!0.80!5.30!HOXA10;;chr5:137801160..137801176,+!p1@EGR1!0.79!563.47!EGR1;;chr9:16870710..16870763,-!p1@BNC2!0.79!9.28!BNC2;;chr1:170632723..170632739,+!p8@PRRX1!0.79!5.11!PRRX1;;chr4:26322419..26322479,+!p2@RBPJ!0.77!64.59!RBPJ;;chr14:62162258..62162269,+!p2@HIF1A!0.77!51.90!HIF1A;;chr6:19837592..19837621,+!p1@ID4!0.77!32.77!ID4;;chr11:65687158..65687216,+!p4@DRAP1!0.77!30.87!DRAP1;;chr17:38256799..38256815,-!p3@NR1D1!0.77!9.28!NR1D1;;chr7:14029312..14029325,-!p4@ETV1!0.77!6.25!ETV1;;chr15:67458491..67458505,+!p18@SMAD3!0.77!4.92!SMAD3;;chr19:13135386..13135435,+!p4@NFIX!0.77!4.92!NFIX;;chr5:133450365..133450444,+!p1@TCF7!0.76!23.86!TCF7;;chr7:113726357..113726443,+!p1@FOXP2!0.76!8.52!FOXP2;;chr7:44143997..44144008,+!p3@AEBP1!0.76!6.25!AEBP1;;chr1:170632477..170632506,+!p6@PRRX1!0.76!4.74!PRRX1;;chr20:39317868..39317884,-!p1@MAFB!0.75!60.42!MAFB;;chr7:28448965..28448994,+!p2@CREB5!0.73!17.05!CREB5;;chr14:62162285..62162296,+!p3@HIF1A!0.72!24.43!HIF1A;;chr11:65687222..65687240,+!p7@DRAP1!0.72!5.68!DRAP1;;chr10:63809106..63809127,+!p1@ARID5B!0.71!63.83!ARID5B;;chr1:59249688..59249703,-!p3@JUN!0.71!28.03!JUN;;chr18:22932080..22932170,-!p1@ZNF521!0.71!19.32!ZNF521;;chr19:13134457..13134462,+!p5@NFIX!0.71!7.95!NFIX;;chr11:46299539..46299620,+!p2@CREB3L1!0.71!7.39!CREB3L1;;chr12:54394309..54394336,+!p2@HOXC9!0.71!4.17!HOXC9;;chr7:27205136..27205164,-!p1@HOXA9!0.71!4.17!HOXA9;;chr8:93074803..93074845,-!p1@RUNX1T1!0.71!4.17!RUNX1T1;;chr4:174451350..174451363,-!p3@HAND2!0.71!4.17!HAND2;;chr14:61116183..61116208,-!p1@SIX1!0.70!17.05!SIX1;;chr10:64576105..64576133,-!p1@EGR2!0.70!8.90!EGR2;;chr21:36260343..36260402,-!p6@RUNX1!0.70!6.82!RUNX1;;chr12:26277817..26277863,-!p2@BHLHE41!0.70!5.68!BHLHE41;;chr2:102091144..102091183,-!p2@RFX8!0.70!3.98!RFX8;;chr3:21792774..21792789,-!p8@ZNF385D!0.70!3.98!ZNF385D;;chr1:170632647..170632659,+!p17@PRRX1!0.70!3.98!PRRX1;;chr19:12902289..12902307,+!p1@JUNB!0.69!1034.33!JUNB;;chr6:85474299..85474324,-!p1@TBX18!0.69!7.58!TBX18;;chr1:170632310..170632321,+!p15@PRRX1!0.68!3.79!PRRX1;;chr1:2985726..2985752,+!p2@PRDM16!0.68!3.79!PRDM16;;chr10:35484090..35484104,+!p6@CREM!0.68!3.79!CREM;;chr12:66218923..66218934,+!p14@HMGA2!0.68!3.79!HMGA2;;chr16:31076332..31076388,-!p3@ZNF668!0.68!3.79!ZNF668;;chr7:42276787..42276815,-!p1@GLI3!0.67!10.99!GLI3;;chr2:200323414..200323455,-!p1@SATB2!0.67!8.52!SATB2;;chr8:72756267..72756296,-!p4@MSC!0.67!5.68!MSC;;chr17:59477275..59477286,+!p3@TBX2!0.67!5.11!TBX2;;chr6:126240442..126240459,+!p4@NCOA7!0.67!4.92!NCOA7;;chr5:137804130..137804156,+!p5@EGR1!0.67!3.98!EGR1;;chr1:212782094..212782109,+!p1@ATF3!0.66!114.40!ATF3;;chr12:96588143..96588185,+!p1@ELK3!0.66!50.95!ELK3;;chr3:114343768..114343822,-!p1@ZBTB20!0.66!17.99!ZBTB20;;chr3:5021191..5021202,+!p3@BHLHE40!0.66!10.61!BHLHE40;;chr5:134369905..134369972,-!p1@PITX1!0.66!5.87!PITX1;;chr6:1612248..1612281,+!p2@FOXC1!0.66!3.98!FOXC1;;chr9:16705069..16705086,-!p3@BNC2!0.66!3.60!BNC2;;chr1:158979792..158979814,+!p2@IFI16!0.65!38.26!IFI16;;chr16:79634624..79634642,-!p1@MAF!0.65!15.72!MAF;;chr16:54964740..54964789,+!p1@IRX5!0.65!5.30!IRX5;;chr9:16870659..16870675,-!p2@BNC2!0.65!4.36!BNC2;;chr9:110252035..110252057,-!p1@KLF4!0.64!63.64!KLF4;;chr3:141087393..141087426,+!p3@ZBTB38!0.64!15.53!ZBTB38;;chr8:116681409..116681431,-!p2@TRPS1!0.64!10.42!TRPS1;;chr19:13136130..13136165,+!p6@NFIX!0.64!4.74!NFIX;;chr1:203055129..203055147,-!p1@MYOG!0.64!3.41!MYOG;;chr7:14025855..14025890,-!p6@ETV1!0.64!3.41!ETV1;;chr7:28449015..28449024,+!p6@CREB5!0.64!3.41!CREB5;;chr9:102584278..102584285,+!p5@NR4A3!0.64!3.41!NR4A3;;chr12:66218904..66218913,+!p11@HMGA2!0.64!3.41!HMGA2;;chr9:94186085..94186096,-!p3@NFIL3!0.63!5.87!NFIL3;;chr16:54320280..54320291,-!p9@IRX3!0.63!3.22!IRX3;;chr16:86600870..86600921,+!p2@FOXC2!0.63!3.22!FOXC2;;chr3:157824001..157824078,-!p2@SHOX2!0.63!3.22!SHOX2;;chr1:170632762..170632786,+!p13@PRRX1!0.63!3.22!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.63!3.22!PRRX1;;chr4:26322616..26322652,+!p1@RBPJ!0.62!82.39!RBPJ;;chr2:145275162..145275202,-!p2@ZEB2!0.62!21.78!ZEB2;;chr5:72744594..72744609,-!p1@FOXD1!0.62!17.05!FOXD1;;chr12:66218183..66218209,+!p4@HMGA2!0.62!6.82!HMGA2;;chr4:81118647..81118666,+!p1@PRDM8!0.61!4.36!PRDM8;;chr8:93074848..93074871,-!p3@RUNX1T1!0.61!3.03!RUNX1T1;;chr16:54319010..54319041,-!p8@IRX3!0.61!3.03!IRX3;;chr16:54320302..54320317,-!p10@IRX3!0.61!3.03!IRX3;;chr21:36260325..36260341,-!p14@RUNX1!0.61!3.03!RUNX1;;chr11:65667846..65667868,-!p1@FOSL1!0.59!93.57!FOSL1;;chr5:88178983..88179012,-!p1@MEF2C!0.59!27.08!MEF2C;;chr12:26277956..26277980,-!p1@BHLHE41!0.59!12.12!BHLHE41;;chr13:74708029..74708077,-!p2@KLF12!0.59!9.66!KLF12;;chr1:200379104..200379128,-!p2@ZNF281!0.59!8.14!ZNF281;;chr7:28448995..28449011,+!p4@CREB5!0.59!4.36!CREB5;;chr12:72056800..72056834,+!p1@THAP2!0.59!4.17!THAP2;;chr7:44143738..44143760,+!p4@AEBP1!0.59!3.41!AEBP1;;chr9:4300050..4300118,-!p1@GLIS3!0.58!22.16!GLIS3;;chr2:208394817..208394834,+!p3@CREB1!0.58!13.45!CREB1;;chr18:3451646..3451691,+!p3@TGIF1!0.58!8.71!TGIF1;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!0.58!7.01!SOHLH2;;chr1:158969752..158969780,+!p6@IFI16!0.58!5.49!IFI16;;chr1:17063213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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002092;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002540;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
 |ffid_belonging_in_development=CL:0000134
 |fonse_cell_line=
@@ Line 40: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520bone%2520marrow%252c%2520donor1.CNhs12366.11750-123G4.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520bone%2520marrow%252c%2520donor1.CNhs12366.11750-123G4.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520bone%2520marrow%252c%2520donor1.CNhs12366.11750-123G4.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520bone%2520marrow%252c%2520donor1.CNhs12366.11750-123G4.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520bone%2520marrow%252c%2520donor1.CNhs12366.11750-123G4.hg38.nobarcode.ctss.bed.gz
 |id=FF:11750-123G4
 |is_a=EFO:0002091;;FF:0000269
 |is_obsolete=
 |library_id=CNhs12366
+|library_id_phase_based=2:CNhs12366
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11750
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11750
 |name=mesenchymal precursor cell - bone marrow, donor1
 |namespace=FANTOM5
@@ Line 49: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12366,LSID914,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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FF:11750-123G4: Difference between revisions

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Latest revision as of 18:17, 4 June 2020

	FAQ
	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0