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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS008241
|DRA_sample_Accession=CAGE@SAMD00004680
|accession_numbers=CAGE;DRX008349;DRR009221;DRZ000646;DRZ002031
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004680
|accession_numbers=CAGE;DRX008349;DRR009221;DRZ000646;DRZ002031;DRZ011996;DRZ013381
|accession_numbers_RNASeq=sRNA-Seq;DRX036994;DRR041360;DRZ007002
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000305,UBERON:0002384,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0005631,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000478,UBERON:0010317,UBERON:0000158
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000305,UBERON:0002384,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0005631,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000478,UBERON:0010317,UBERON:0000158
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000349,CL:0000255,CL:0000034,CL:0002537
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000349,CL:0000255,CL:0000034,CL:0002537
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr4:174451370..174451387,-!p1@HAND2!1.79!60.10!HAND2;;chr15:96869255..96869291,+!p6@NR2F2!1.70!88.03!NR2F2;;chr2:176969228..176969260,+!p1@HOXD11!1.59!37.76!HOXD11;;chr7:27224795..27224840,-!p2@HOXA11!1.58!37.23!HOXA11;;chr15:96869222..96869251,+!p18@NR2F2!1.53!38.83!NR2F2;;chr11:46299199..46299233,+!p1@CREB3L1!1.48!144.40!CREB3L1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.48!29.52!ZBED1;;chr7:27224842..27224872,-!p1@HOXA11!1.48!28.99!HOXA11;;chr5:92918919..92918942,+!p1@NR2F1!1.45!117.81!NR2F1;;chr15:96869165..96869183,+!p20@NR2F2!1.41!24.73!NR2F2;;chr15:96869114..96869160,+!p11@NR2F2!1.39!31.91!NR2F2;;chr15:96869292..96869320,+!p15@NR2F2!1.31!27.66!NR2F2;;chr3:138665937..138665968,-!p1@FOXL2!1.30!19.15!FOXL2;;chr2:176973498..176973524,+!p1@HOXD10!1.30!18.88!HOXD10;;chr15:96874145..96874166,+!p7@NR2F2!1.25!32.18!NR2F2;;chr15:96876966..96877017,+!p12@NR2F2!1.25!24.20!NR2F2;;chr2:176969179..176969226,+!p2@HOXD11!1.23!15.96!HOXD11;;chr5:92919100..92919135,+!p3@NR2F1!1.20!18.08!NR2F1;;chr5:92918956..92918969,+!p4@NR2F1!1.20!16.22!NR2F1;;chr4:174450089..174450153,-!p2@HAND2!1.19!14.36!HAND2;;chr5:134369879..134369898,-!p2@PITX1!1.16!13.56!PITX1;;chr5:134369905..134369972,-!p1@PITX1!1.14!19.68!PITX1;;chr6:10415276..10415341,-!p2@TFAP2A!1.14!15.69!TFAP2A;;chr15:96874244..96874259,+!p5@NR2F2!1.13!30.05!NR2F2;;chr15:57511609..57511651,+!p2@TCF12!1.12!20.74!TCF12;;chr1:170633348..170633399,+!p2@PRRX1!1.11!16.22!PRRX1;;chr16:86544113..86544145,+!p1@FOXF1!1.11!14.89!FOXF1;;chr15:96869206..96869220,+!p21@NR2F2!1.11!11.97!NR2F2;;chr11:46299539..46299620,+!p2@CREB3L1!1.10!19.68!CREB3L1;;chr1:170632285..170632309,+!p1@PRRX1!1.10!13.03!PRRX1;;chr3:138665760..138665772,-!p3@FOXL2!1.10!11.70!FOXL2;;chr2:239756671..239756732,+!p1@TWIST2!1.08!35.37!TWIST2;;chr1:170632959..170632987,+!p4@PRRX1!1.07!11.70!PRRX1;;chr7:27192185..27192209,-!p1@HOXA3!1.07!10.64!HOXA3;;chr3:128206762..128206781,-!p2@GATA2!1.06!65.15!GATA2;;chr17:1959369..1959388,+!p2@HIC1!1.06!28.19!HIC1;;chr6:10412600..10412637,-!p1@TFAP2A!1.05!17.02!TFAP2A;;chr10:119302232..119302265,+!p1@EMX2!1.05!10.11!EMX2;;chr5:92919375..92919438,+!p6@NR2F1!1.04!10.90!NR2F1;;chr10:119303078..119303169,+!p2@EMX2!1.04!9.84!EMX2;;chr2:239756739..239756755,+!p2@TWIST2!1.03!16.75!TWIST2;;chr12:115121962..115121987,-!p1@TBX3!1.02!80.31!TBX3;;chr15:42749722..42749739,-!p2@ZFP106!1.00!16.49!ZFP106;;chr3:128212033..128212051,-!p1@GATA2!1.00!9.04!GATA2;;chr3:141150883..141150961,+!p6@ZBTB38!0.99!8.78!ZBTB38;;chr17:59477233..59477263,+!p1@TBX2!0.97!26.59!TBX2;;chr10:28034739..28034756,-!p1@MKX!0.97!8.24!MKX;;chr5:92919068..92919082,+!p5@NR2F1!0.94!9.31!NR2F1;;chr7:44143925..44143970,+!p1@AEBP1!0.93!172.86!AEBP1;;chr15:96874012..96874042,+!p2@NR2F2!0.93!70.74!NR2F2;;chr7:27213893..27213954,-!p1@HOXA10!0.93!7.45!HOXA10;;chr3:138665702..138665729,-!p7@FOXL2!0.93!7.45!FOXL2;;chr3:141151009..141151033,+!p10@ZBTB38!0.91!7.18!ZBTB38;;chr5:92918768..92918783,+!p8@NR2F1!0.91!7.18!NR2F1;;chr7:27205136..27205164,-!p1@HOXA9!0.91!7.18!HOXA9;;chr3:138665790..138665809,-!p4@FOXL2!0.90!6.91!FOXL2;;chr10:63809106..63809127,+!p1@ARID5B!0.89!95.47!ARID5B;;chr2:176981499..176981522,+!p2@HOXD10!0.88!6.65!HOXD10;;chr3:138665774..138665786,-!p5@FOXL2!0.88!6.65!FOXL2;;chr6:21593973..21593988,+!p1@SOX4!0.87!244.13!SOX4;;chr2:177001290..177001315,+!p1@HOXD3!0.87!6.38!HOXD3;;chr7:28220198..28220269,-!p2@JAZF1!0.86!59.84!JAZF1;;chr4:174451350..174451363,-!p3@HAND2!0.85!6.12!HAND2;;chr10:119302645..119302712,+!p3@EMX2!0.85!6.12!EMX2;;chr12:80085061..80085119,-!p6@PAWR!0.84!9.84!PAWR;;chr8:99956662..99956684,+!p1@OSR2!0.84!9.31!OSR2;;chr6:10412392..10412409,-!p4@TFAP2A!0.84!6.91!TFAP2A;;chr2:176969097..176969109,+!p3@HOXD11!0.84!5.85!HOXD11;;chr3:141121847..141121868,+!p5@ZBTB38!0.83!9.04!ZBTB38;;chr17:1958388..1958404,+!p1@HIC1!0.82!38.03!HIC1;;chr10:63809013..63809041,+!p3@ARID5B!0.82!33.24!ARID5B;;chr1:170633058..170633084,+!p5@PRRX1!0.82!5.58!PRRX1;;chr7:44143978..44143989,+!p2@AEBP1!0.81!10.37!AEBP1;;chr14:24837368..24837401,+!p1@NFATC4!0.79!13.03!NFATC4;;chr5:92918860..92918871,+!p10@NR2F1!0.78!5.58!NR2F1;;chr7:1577899..1577943,+!p3@MAFK!0.78!5.05!MAFK;;chr10:28032421..28032494,-!p2@MKX!0.78!5.05!MKX;;chr12:115122318..115122331,-!p2@TBX3!0.78!5.05!TBX3;;chr12:80085120..80085156,-!p14@PAWR!0.78!5.05!PAWR;;chr3:138665969..138665993,-!p2@FOXL2!0.78!5.05!FOXL2;;chr16:51185172..51185197,-!p1@SALL1!0.78!5.05!SALL1;;chr15:96874216..96874236,+!p13@NR2F2!0.76!7.71!NR2F2;;chr1:170633262..170633285,+!p3@PRRX1!0.76!5.58!PRRX1;;chr15:96874927..96874938,+!p8@NR2F2!0.75!10.64!NR2F2;;chr17:59477275..59477286,+!p3@TBX2!0.74!6.12!TBX2;;chr16:31076332..31076388,-!p3@ZNF668!0.74!4.52!ZNF668;;chr5:92919452..92919496,+!p11@NR2F1!0.74!4.52!NR2F1;;chr19:31840130..31840160,-!p2@TSHZ3!0.73!7.18!TSHZ3;;chr12:115122005..115122016,-!p3@TBX3!0.73!5.32!TBX3;;chrX:66763856..66763896,+!p1@AR!0.72!6.38!AR;;chr5:92920456..92920488,+!p9@NR2F1!0.72!5.05!NR2F1;;chr2:176981526..176981543,+!p3@HOXD10!0.72!4.26!HOXD10;;c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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000034;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000134;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002537;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000158;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000305;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004871
|ffid_belonging_in_development=CL:0000134
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
Line 40: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520amniotic%2520membrane%252c%2520donor1.CNhs11349.11547-120B8.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520amniotic%2520membrane%252c%2520donor1.CNhs11349.11547-120B8.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520amniotic%2520membrane%252c%2520donor1.CNhs11349.11547-120B8.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520amniotic%2520membrane%252c%2520donor1.CNhs11349.11547-120B8.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520amniotic%2520membrane%252c%2520donor1.CNhs11349.11547-120B8.hg38.nobarcode.ctss.bed.gz
|id=FF:11547-120B8
|id=FF:11547-120B8
|is_a=EFO:0002091;;FF:0000276
|is_a=EFO:0002091;;FF:0000276
|is_obsolete=
|is_obsolete=
|library_id=CNhs11349
|library_id=CNhs11349
|library_id_phase_based=2:CNhs11349
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11547
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10002.CAGATC.11547
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11547
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10002.CAGATC.11547
|name=Mesenchymal Stem Cells - amniotic membrane, donor1
|name=Mesenchymal Stem Cells - amniotic membrane, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 49: Line 65:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11349,LSID769,release014,COMPLETED
|profile_hcage=CNhs11349,LSID769,release014,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10002,,,
|profile_srnaseq=SRhi10002,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|sample_category=primary cells
Line 88: Line 106:
|top_motifs=SRF:2.00796676639;ESR1:1.96790838793;TAL1_TCF{3,4,12}:1.5826099249;TEF:1.42299176955;SPZ1:1.22676159024;TEAD1:1.22245378617;LHX3,4:1.18775126844;SREBF1,2:1.17535875676;ZNF384:1.16701060535;HSF1,2:1.16255086812;NFATC1..3:1.15323081991;GCM1,2:1.13054902625;UFEwm:1.12430174588;GZF1:1.09007195735;GATA4:1.08063681919;NR3C1:1.07195780238;MAFB:1.05926514128;HES1:1.05777983067;ZNF238:1.04248498683;KLF4:1.0397009769;TP53:1.01946850815;HMGA1,2:0.998182860075;GFI1B:0.978334800563;PRDM1:0.944457656117;GTF2I:0.938779723346;EVI1:0.926736584224;HBP1_HMGB_SSRP1_UBTF:0.877235808765;TLX1..3_NFIC{dimer}:0.874251144128;TFAP2{A,C}:0.803222094488;TFAP4:0.788489660401;CDC5L:0.774868887163;GLI1..3:0.770410830802;GTF2A1,2:0.747223996918;FOXD3:0.736566592262;MYBL2:0.727116341318;SMAD1..7,9:0.723482604901;PAX1,9:0.698626377143;TBX4,5:0.689328158813;PATZ1:0.683078868081;RXR{A,B,G}:0.630427422989;MAZ:0.621762447084;SOX17:0.606983178469;ZBTB6:0.592027592412;MZF1:0.584026388145;TFCP2:0.582774276519;HMX1:0.562052368341;ALX4:0.55474342919;DBP:0.536307894912;NHLH1,2:0.527097591676;ARID5B:0.525508903933;ATF6:0.509995713127;EBF1:0.50126877178;NKX6-1,2:0.49749834534;NR1H4:0.489526499969;NFE2L1:0.450116338787;ZNF148:0.442661285668;MYFfamily:0.438232932264;TFAP2B:0.410061970112;HAND1,2:0.401790824801;IKZF1:0.389683916001;NKX3-1:0.371277315616;NKX2-2,8:0.361894210777;MTE{core}:0.356213041027;bHLH_family:0.327233389765;HIC1:0.321762169474;SOX2:0.30553427381;CRX:0.301921218464;HOX{A6,A7,B6,B7}:0.284903245769;EN1,2:0.279517917154;XBP1:0.277218917997;TBP:0.263396765447;ZIC1..3:0.259045260007;MEF2{A,B,C,D}:0.25262381727;NFE2L2:0.248128609042;ATF2:0.237799410213;RREB1:0.216814477188;PAX8:0.206842343122;PAX5:0.205910285721;EGR1..3:0.201254803883;RXRA_VDR{dimer}:0.198354878625;NR6A1:0.189826257608;PAX4:0.182814802117;HOX{A4,D4}:0.180294599095;IRF1,2:0.175374121509;ZFP161:0.165292143696;ZNF423:0.15970530672;NFIX:0.15754426091;TOPORS:0.147179671552;NANOG{mouse}:0.137148794759;XCPE1{core}:0.122540862969;HLF:0.120040997684;SP1:0.109422333087;POU3F1..4:0.101336564085;HNF1A:0.0933296448187;ADNP_IRX_SIX_ZHX:0.0890373298143;MED-1{core}:0.0820812981048;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0670229824108;BACH2:0.0346979973332;HOX{A5,B5}:0.0277419162608;AIRE:0.0194578838371;HNF4A_NR2F1,2:0.0111324954392;LEF1_TCF7_TCF7L1,2:-0.00395101393639;FOXL1:-0.00862298788973;ELK1,4_GABP{A,B1}:-0.0361005621223;HIF1A:-0.0366490670944;NRF1:-0.0399071850803;SOX5:-0.040948804184;NKX2-3_NKX2-5:-0.055705917161;CEBPA,B_DDIT3:-0.057398546662;AHR_ARNT_ARNT2:-0.0937555287886;NFE2:-0.0952424116889;ESRRA:-0.109708380815;PAX3,7:-0.133693899482;PPARG:-0.148806273704;ZNF143:-0.15594907735;REST:-0.184236346625;POU6F1:-0.19484384212;FOS_FOS{B,L1}_JUN{B,D}:-0.207544461207;POU5F1:-0.209815021897;NKX3-2:-0.217660798184;FOSL2:-0.234758297336;STAT1,3:-0.235339565902;FOXO1,3,4:-0.239449717127;YY1:-0.254504501945;FOXM1:-0.256564822399;IRF7:-0.267524096705;ONECUT1,2:-0.270153863161;FOXA2:-0.279897665592;SPIB:-0.292630633033;TFDP1:-0.309573700856;PAX2:-0.310782939657;HOXA9_MEIS1:-0.336809725358;NFKB1_REL_RELA:-0.344071375604;MYB:-0.359728377429;DMAP1_NCOR{1,2}_SMARC:-0.36007095717;FOXN1:-0.372120220934;RFX1:-0.39937443688;RFX2..5_RFXANK_RFXAP:-0.400446376411;SPI1:-0.401407370053;FOX{D1,D2}:-0.413354435519;CREB1:-0.417267127723;ETS1,2:-0.432664181554;TLX2:-0.440836238293;ATF5_CREB3:-0.445034724742;AR:-0.454145141106;IKZF2:-0.497027740366;T:-0.497400538978;ELF1,2,4:-0.537230691743;MTF1:-0.542765034198;NR5A1,2:-0.557754776118;RUNX1..3:-0.564481075758;TGIF1:-0.581315838862;SNAI1..3:-0.585512937406;FOXQ1:-0.604576170106;PAX6:-0.605482982109;NKX2-1,4:-0.613183487727;EP300:-0.620583221006;PRRX1,2:-0.631541664452;VSX1,2:-0.66313900659;E2F1..5:-0.686101392398;GFI1:-0.69481135287;STAT2,4,6:-0.702530026974;ZBTB16:-0.718695654765;ZEB1:-0.725878289486;OCT4_SOX2{dimer}:-0.735673528938;CUX2:-0.73704508207;SOX{8,9,10}:-0.740817597294;CDX1,2,4:-0.754012398859;FOXP1:-0.756847245331;FOX{I1,J2}:-0.760085184165;JUN:-0.769674436421;LMO2:-0.783112372822;MYOD1:-0.80673591587;NFY{A,B,C}:-0.810622815616;RORA:-0.814847943616;NFIL3:-0.815603926155;BPTF:-0.838512019491;GATA6:-0.842866670362;RBPJ:-0.850174623983;ATF4:-0.889969240843;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.903194790404;PITX1..3:-0.985846549248;POU1F1:-0.987385118171;BREu{core}:-0.999679385278;FOX{F1,F2,J1}:-1.00961372013;FOXP3:-1.05078723943;STAT5{A,B}:-1.06916040831;PBX1:-1.24645568228;NANOG:-1.27991109827;POU2F1..3:-1.322883976;PDX1:-1.33554339963;ALX1:-1.44900298793
|top_motifs=SRF:2.00796676639;ESR1:1.96790838793;TAL1_TCF{3,4,12}:1.5826099249;TEF:1.42299176955;SPZ1:1.22676159024;TEAD1:1.22245378617;LHX3,4:1.18775126844;SREBF1,2:1.17535875676;ZNF384:1.16701060535;HSF1,2:1.16255086812;NFATC1..3:1.15323081991;GCM1,2:1.13054902625;UFEwm:1.12430174588;GZF1:1.09007195735;GATA4:1.08063681919;NR3C1:1.07195780238;MAFB:1.05926514128;HES1:1.05777983067;ZNF238:1.04248498683;KLF4:1.0397009769;TP53:1.01946850815;HMGA1,2:0.998182860075;GFI1B:0.978334800563;PRDM1:0.944457656117;GTF2I:0.938779723346;EVI1:0.926736584224;HBP1_HMGB_SSRP1_UBTF:0.877235808765;TLX1..3_NFIC{dimer}:0.874251144128;TFAP2{A,C}:0.803222094488;TFAP4:0.788489660401;CDC5L:0.774868887163;GLI1..3:0.770410830802;GTF2A1,2:0.747223996918;FOXD3:0.736566592262;MYBL2:0.727116341318;SMAD1..7,9:0.723482604901;PAX1,9:0.698626377143;TBX4,5:0.689328158813;PATZ1:0.683078868081;RXR{A,B,G}:0.630427422989;MAZ:0.621762447084;SOX17:0.606983178469;ZBTB6:0.592027592412;MZF1:0.584026388145;TFCP2:0.582774276519;HMX1:0.562052368341;ALX4:0.55474342919;DBP:0.536307894912;NHLH1,2:0.527097591676;ARID5B:0.525508903933;ATF6:0.509995713127;EBF1:0.50126877178;NKX6-1,2:0.49749834534;NR1H4:0.489526499969;NFE2L1:0.450116338787;ZNF148:0.442661285668;MYFfamily:0.438232932264;TFAP2B:0.410061970112;HAND1,2:0.401790824801;IKZF1:0.389683916001;NKX3-1:0.371277315616;NKX2-2,8:0.361894210777;MTE{core}:0.356213041027;bHLH_family:0.327233389765;HIC1:0.321762169474;SOX2:0.30553427381;CRX:0.301921218464;HOX{A6,A7,B6,B7}:0.284903245769;EN1,2:0.279517917154;XBP1:0.277218917997;TBP:0.263396765447;ZIC1..3:0.259045260007;MEF2{A,B,C,D}:0.25262381727;NFE2L2:0.248128609042;ATF2:0.237799410213;RREB1:0.216814477188;PAX8:0.206842343122;PAX5:0.205910285721;EGR1..3:0.201254803883;RXRA_VDR{dimer}:0.198354878625;NR6A1:0.189826257608;PAX4:0.182814802117;HOX{A4,D4}:0.180294599095;IRF1,2:0.175374121509;ZFP161:0.165292143696;ZNF423:0.15970530672;NFIX:0.15754426091;TOPORS:0.147179671552;NANOG{mouse}:0.137148794759;XCPE1{core}:0.122540862969;HLF:0.120040997684;SP1:0.109422333087;POU3F1..4:0.101336564085;HNF1A:0.0933296448187;ADNP_IRX_SIX_ZHX:0.0890373298143;MED-1{core}:0.0820812981048;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0670229824108;BACH2:0.0346979973332;HOX{A5,B5}:0.0277419162608;AIRE:0.0194578838371;HNF4A_NR2F1,2:0.0111324954392;LEF1_TCF7_TCF7L1,2:-0.00395101393639;FOXL1:-0.00862298788973;ELK1,4_GABP{A,B1}:-0.0361005621223;HIF1A:-0.0366490670944;NRF1:-0.0399071850803;SOX5:-0.040948804184;NKX2-3_NKX2-5:-0.055705917161;CEBPA,B_DDIT3:-0.057398546662;AHR_ARNT_ARNT2:-0.0937555287886;NFE2:-0.0952424116889;ESRRA:-0.109708380815;PAX3,7:-0.133693899482;PPARG:-0.148806273704;ZNF143:-0.15594907735;REST:-0.184236346625;POU6F1:-0.19484384212;FOS_FOS{B,L1}_JUN{B,D}:-0.207544461207;POU5F1:-0.209815021897;NKX3-2:-0.217660798184;FOSL2:-0.234758297336;STAT1,3:-0.235339565902;FOXO1,3,4:-0.239449717127;YY1:-0.254504501945;FOXM1:-0.256564822399;IRF7:-0.267524096705;ONECUT1,2:-0.270153863161;FOXA2:-0.279897665592;SPIB:-0.292630633033;TFDP1:-0.309573700856;PAX2:-0.310782939657;HOXA9_MEIS1:-0.336809725358;NFKB1_REL_RELA:-0.344071375604;MYB:-0.359728377429;DMAP1_NCOR{1,2}_SMARC:-0.36007095717;FOXN1:-0.372120220934;RFX1:-0.39937443688;RFX2..5_RFXANK_RFXAP:-0.400446376411;SPI1:-0.401407370053;FOX{D1,D2}:-0.413354435519;CREB1:-0.417267127723;ETS1,2:-0.432664181554;TLX2:-0.440836238293;ATF5_CREB3:-0.445034724742;AR:-0.454145141106;IKZF2:-0.497027740366;T:-0.497400538978;ELF1,2,4:-0.537230691743;MTF1:-0.542765034198;NR5A1,2:-0.557754776118;RUNX1..3:-0.564481075758;TGIF1:-0.581315838862;SNAI1..3:-0.585512937406;FOXQ1:-0.604576170106;PAX6:-0.605482982109;NKX2-1,4:-0.613183487727;EP300:-0.620583221006;PRRX1,2:-0.631541664452;VSX1,2:-0.66313900659;E2F1..5:-0.686101392398;GFI1:-0.69481135287;STAT2,4,6:-0.702530026974;ZBTB16:-0.718695654765;ZEB1:-0.725878289486;OCT4_SOX2{dimer}:-0.735673528938;CUX2:-0.73704508207;SOX{8,9,10}:-0.740817597294;CDX1,2,4:-0.754012398859;FOXP1:-0.756847245331;FOX{I1,J2}:-0.760085184165;JUN:-0.769674436421;LMO2:-0.783112372822;MYOD1:-0.80673591587;NFY{A,B,C}:-0.810622815616;RORA:-0.814847943616;NFIL3:-0.815603926155;BPTF:-0.838512019491;GATA6:-0.842866670362;RBPJ:-0.850174623983;ATF4:-0.889969240843;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.903194790404;PITX1..3:-0.985846549248;POU1F1:-0.987385118171;BREu{core}:-0.999679385278;FOX{F1,F2,J1}:-1.00961372013;FOXP3:-1.05078723943;STAT5{A,B}:-1.06916040831;PBX1:-1.24645568228;NANOG:-1.27991109827;POU2F1..3:-1.322883976;PDX1:-1.33554339963;ALX1:-1.44900298793
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11547-120B8;search_select_hide=table117:FF:11547-120B8
}}
}}

Latest revision as of 18:08, 4 June 2020

Name:Mesenchymal Stem Cells - amniotic membrane, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11349
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueamnion
dev stagefetus
sexfemale
age?
cell typemesenchymal stem cell
cell lineNA
companyCET
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberN/A
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004680
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11349 CAGE DRX008349 DRR009221
Accession ID Hg19

Library idBAMCTSS
CNhs11349 DRZ000646 DRZ002031
Accession ID Hg38

Library idBAMCTSS
CNhs11349 DRZ011996 DRZ013381
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004680
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10002.CAGATC sRNA-Seq DRX036994 DRR041360
Accession ID Hg19

Library idBAMCTSS
SRhi10002.CAGATC DRZ007002


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0418
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.216
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.56
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.185
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0882
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0903
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.255
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0933
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0427
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.633
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.579
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.255
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.329
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0501
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.185
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.285
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.065
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.255
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.563
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.222
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11349

Jaspar motifP-value
MA0002.20.0821
MA0003.10.26
MA0004.10.589
MA0006.10.0844
MA0007.10.473
MA0009.10.423
MA0014.10.0932
MA0017.10.202
MA0018.24.28326e-7
MA0019.10.449
MA0024.13.65098e-6
MA0025.10.00313
MA0027.10.841
MA0028.10.13
MA0029.10.665
MA0030.10.196
MA0031.10.0482
MA0035.20.143
MA0038.10.15
MA0039.20.00981
MA0040.10.937
MA0041.10.66
MA0042.10.727
MA0043.12.44866e-5
MA0046.10.623
MA0047.20.0575
MA0048.10.898
MA0050.10.872
MA0051.10.734
MA0052.10.336
MA0055.10.471
MA0057.10.308
MA0058.10.582
MA0059.10.238
MA0060.13.15846e-8
MA0061.10.0186
MA0062.21.6444e-5
MA0065.20.0969
MA0066.10.868
MA0067.10.0679
MA0068.10.0693
MA0069.10.217
MA0070.10.887
MA0071.10.933
MA0072.10.883
MA0073.10.65
MA0074.10.782
MA0076.10.0584
MA0077.10.57
MA0078.10.89
MA0079.20.767
MA0080.22.0048e-8
MA0081.10.0313
MA0083.17.9816e-9
MA0084.10.782
MA0087.10.952
MA0088.10.171
MA0090.18.00162e-6
MA0091.10.112
MA0092.10.314
MA0093.10.733
MA0099.20.0797
MA0100.10.18
MA0101.10.00283
MA0102.20.174
MA0103.10.0058
MA0104.20.00236
MA0105.10.323
MA0106.10.171
MA0107.10.00472
MA0108.20.262
MA0111.10.256
MA0112.20.163
MA0113.10.624
MA0114.10.14
MA0115.10.0263
MA0116.10.0784
MA0117.10.467
MA0119.10.591
MA0122.10.403
MA0124.10.933
MA0125.10.966
MA0131.10.279
MA0135.10.452
MA0136.12.1118e-9
MA0137.20.0394
MA0138.20.98
MA0139.10.414
MA0140.10.153
MA0141.10.11
MA0142.10.0404
MA0143.10.662
MA0144.10.172
MA0145.10.32
MA0146.10.734
MA0147.10.00172
MA0148.10.281
MA0149.10.162
MA0150.10.0857
MA0152.10.071
MA0153.10.508
MA0154.10.514
MA0155.10.15
MA0156.19.74308e-8
MA0157.10.142
MA0159.10.782
MA0160.10.0721
MA0162.10.141
MA0163.10.989
MA0164.10.952
MA0258.10.437
MA0259.10.0193



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11349

Novel motifP-value
10.115
100.616
1000.257
1010.615
1020.0823
1030.704
1040.752
1050.181
1060.458
1070.399
1080.958
1090.919
110.461
1100.92
1110.472
1120.542
1130.656
1140.576
1150.0309
1160.0888
1170.32
1180.441
1190.439
120.326
1200.288
1210.739
1220.254
1230.0045
1240.321
1250.319
1260.441
1270.969
1280.972
1290.0893
130.0896
1300.266
1310.275
1320.79
1330.436
1340.383
1350.382
1360.569
1370.166
1380.791
1390.765
140.291
1400.208
1410.0541
1420.805
1430.655
1440.826
1450.217
1460.555
1470.111
1480.343
1490.0182
150.219
1500.42
1510.74
1520.018
1530.522
1540.395
1550.00686
1560.598
1570.637
1580.0517
1590.746
160.163
1600.755
1610.2
1620.311
1630.94
1640.73
1650.413
1660.0486
1670.812
1680.919
1690.142
170.94
180.287
190.0182
20.127
200.238
210.107
220.339
230.527
240.774
250.0763
260.292
270.342
280.382
290.813
30.524
300.151
310.692
322.95237e-7
330.28
340.41
350.733
360.0504
370.358
380.238
390.223
40.441
400.333
410.232
420.166
430.574
440.4
450.335
460.878
470.373
480.418
490.418
50.457
500.667
510.955
520.973
530.179
540.541
550.192
560.833
570.537
580.173
590.382
60.23
600.39
610.927
620.247
630.901
640.306
650.837
660.47
670.265
680.891
690.523
70.0661
700.756
710.977
720.872
730.0539
740.412
750.694
760.254
770.16
780.263
790.00404
80.72
800.271
810.863
820.358
830.0861
840.706
850.384
860.606
870.488
880.943
890.28
90.479
900.488
910.888
920.589
930.547
940.909
950.801
960.716
970.538
980.255
990.0413



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11349


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000349 (extraembryonic cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002537 (amnion mesenchymal stem cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000305 (amnion)
0002384 (connective tissue)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0005631 (extraembryonic membrane)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000478 (extraembryonic structure)
0010317 (germ layer / neural crest derived structure)
0000158 (membranous layer)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000092 (human amniotic membrane cell sample)
0000101 (sample by species)
0000001 (sample)
0000276 (human amniotic membrane cell- fetal sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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