FF:11306-117C1: Difference between revisions

Latest revision as of 16:32, 3 June 2020

Name:	CD4+ T Cells, donor2
Species:	Human (Homo sapiens)
Library ID:	CNhs11955
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	57 years old adult
sex	male
age	57
cell type	t cell, CD4+
cell line	NA
company	3HBiomedical
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	CD4T726
catalog number	3H100-23-10
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005976

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11955		CAGE		DRX008177		DRR009049

Accession ID Hg19

Library id		BAM		CTSS
CNhs11955		DRZ000474		DRZ001859

Accession ID Hg38

Library id		BAM		CTSS
CNhs11955		DRZ011824		DRZ013209

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005976

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10009.CTTGTA		sRNA-Seq		DRX037136		DRR041502

Accession ID Hg19

Library id		BAM		CTSS
SRhi10009.CTTGTA		DRZ007144

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0.338
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0635
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.258
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.907
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.786
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.144
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.657
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.574
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.796
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.571
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0.144
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.693
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.169
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.144
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.868
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.574
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0.786
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.864
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.339
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0.617
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0.338
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.217
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.457
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.801
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.72
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.693
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.0725
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.574
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.41
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.772
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.569
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.785
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.657
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0.144
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.876
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.657
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0.41
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0.144
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11955

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00301
MA0003.1	MA0003.1	0.257
MA0004.1	MA0004.1	0.915
MA0006.1	MA0006.1	0.151
MA0007.1	MA0007.1	0.857
MA0009.1	MA0009.1	0.0719
MA0014.1	MA0014.1	0.734
MA0017.1	MA0017.1	0.185
MA0018.2	MA0018.2	1.92494e-7
MA0019.1	MA0019.1	0.442
MA0024.1	MA0024.1	0.678
MA0025.1	MA0025.1	0.312
MA0027.1	MA0027.1	0.937
MA0028.1	MA0028.1	0.335
MA0029.1	MA0029.1	0.245
MA0030.1	MA0030.1	0.0789
MA0031.1	MA0031.1	1.72024e-4
MA0035.2	MA0035.2	0.768
MA0038.1	MA0038.1	0.0135
MA0039.2	MA0039.2	0.225
MA0040.1	MA0040.1	0.536
MA0041.1	MA0041.1	0.229
MA0042.1	MA0042.1	0.552
MA0043.1	MA0043.1	0.0341
MA0046.1	MA0046.1	0.0501
MA0047.2	MA0047.2	0.646
MA0048.1	MA0048.1	0.748
MA0050.1	MA0050.1	0.00179
MA0051.1	MA0051.1	0.219
MA0052.1	MA0052.1	0.0342
MA0055.1	MA0055.1	0.755
MA0057.1	MA0057.1	0.186
MA0058.1	MA0058.1	0.801
MA0059.1	MA0059.1	0.894
MA0060.1	MA0060.1	0.00533
MA0061.1	MA0061.1	5.48624e-9
MA0062.2	MA0062.2	4.19552e-5
MA0065.2	MA0065.2	0.921
MA0066.1	MA0066.1	0.929
MA0067.1	MA0067.1	0.0232
MA0068.1	MA0068.1	0.987
MA0069.1	MA0069.1	0.583
MA0070.1	MA0070.1	0.405
MA0071.1	MA0071.1	0.969
MA0072.1	MA0072.1	0.322
MA0073.1	MA0073.1	0.805
MA0074.1	MA0074.1	0.971
MA0076.1	MA0076.1	0.2
MA0077.1	MA0077.1	0.0643
MA0078.1	MA0078.1	0.964
MA0079.2	MA0079.2	0.544
MA0080.2	MA0080.2	6.48188e-7
MA0081.1	MA0081.1	0.0655
MA0083.1	MA0083.1	0.175
MA0084.1	MA0084.1	0.594
MA0087.1	MA0087.1	0.451
MA0088.1	MA0088.1	0.427
MA0090.1	MA0090.1	7.90209e-4
MA0091.1	MA0091.1	0.253
MA0092.1	MA0092.1	0.919
MA0093.1	MA0093.1	0.762
MA0099.2	MA0099.2	0.0947
MA0100.1	MA0100.1	0.864
MA0101.1	MA0101.1	1.16697e-5
MA0102.2	MA0102.2	0.815
MA0103.1	MA0103.1	0.459
MA0104.2	MA0104.2	0.42
MA0105.1	MA0105.1	1.6208e-7
MA0106.1	MA0106.1	0.0669
MA0107.1	MA0107.1	4.26221e-5
MA0108.2	MA0108.2	2.47207e-5
MA0111.1	MA0111.1	0.304
MA0112.2	MA0112.2	0.433
MA0113.1	MA0113.1	0.436
MA0114.1	MA0114.1	0.351
MA0115.1	MA0115.1	0.167
MA0116.1	MA0116.1	0.0507
MA0117.1	MA0117.1	0.0514
MA0119.1	MA0119.1	0.903
MA0122.1	MA0122.1	0.665
MA0124.1	MA0124.1	0.16
MA0125.1	MA0125.1	0.0992
MA0131.1	MA0131.1	0.159
MA0135.1	MA0135.1	0.102
MA0136.1	MA0136.1	2.34571e-9
MA0137.2	MA0137.2	0.0348
MA0138.2	MA0138.2	0.0686
MA0139.1	MA0139.1	0.854
MA0140.1	MA0140.1	0.98
MA0141.1	MA0141.1	0.232
MA0142.1	MA0142.1	0.131
MA0143.1	MA0143.1	0.194
MA0144.1	MA0144.1	0.166
MA0145.1	MA0145.1	0.0142
MA0146.1	MA0146.1	0.762
MA0147.1	MA0147.1	0.373
MA0148.1	MA0148.1	0.936
MA0149.1	MA0149.1	0.474
MA0150.1	MA0150.1	0.645
MA0152.1	MA0152.1	0.00542
MA0153.1	MA0153.1	0.132
MA0154.1	MA0154.1	0.805
MA0155.1	MA0155.1	0.265
MA0156.1	MA0156.1	1.24132e-5
MA0157.1	MA0157.1	6.83819e-4
MA0159.1	MA0159.1	0.934
MA0160.1	MA0160.1	0.498
MA0162.1	MA0162.1	0.241
MA0163.1	MA0163.1	0.00518
MA0164.1	MA0164.1	0.541
MA0258.1	MA0258.1	0.686
MA0259.1	MA0259.1	0.429

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11955

Novel motif	Logo	P-value
1	1	0.638
10	10	0.00777
100	100	0.456
101	101	0.114
102	102	0.784
103	103	0.294
104	104	0.899
105	105	0.852
106	106	0.22
107	107	0.143
108	108	0.966
109	109	0.795
11	11	0.487
110	110	0.596
111	111	0.291
112	112	0.897
113	113	0.252
114	114	0.619
115	115	0.778
116	116	0.473
117	117	0.00574
118	118	0.386
119	119	0.812
12	12	0.703
120	120	0.432
121	121	0.798
122	122	0.604
123	123	7.16985e-8
124	124	0.769
125	125	0.911
126	126	0.936
127	127	0.254
128	128	0.998
129	129	0.433
13	13	0.562
130	130	0.165
131	131	0.796
132	132	0.342
133	133	0.673
134	134	0.808
135	135	0.271
136	136	0.936
137	137	0.0371
138	138	0.476
139	139	0.0893
14	14	0.595
140	140	0.323
141	141	0.928
142	142	0.333
143	143	0.147
144	144	0.845
145	145	0.907
146	146	0.342
147	147	0.0608
148	148	0.216
149	149	0.235
15	15	0.339
150	150	0.96
151	151	0.49
152	152	0.524
153	153	0.386
154	154	0.0708
155	155	0.112
156	156	0.749
157	157	0.757
158	158	0.00869
159	159	0.895
16	16	0.307
160	160	0.237
161	161	0.468
162	162	0.0942
163	163	0.874
164	164	0.0312
165	165	0.936
166	166	0.404
167	167	0.0744
168	168	0.412
169	169	0.28
17	17	0.66
18	18	0.59
19	19	0.0802
2	2	0.182
20	20	0.144
21	21	0.59
22	22	0.193
23	23	0.764
24	24	0.387
25	25	0.196
26	26	0.592
27	27	0.6
28	28	0.394
29	29	0.0568
3	3	0.337
30	30	0.0178
31	31	0.523
32	32	0.0454
33	33	0.461
34	34	0.203
35	35	0.137
36	36	0.141
37	37	0.453
38	38	0.832
39	39	0.54
4	4	0.732
40	40	0.651
41	41	0.453
42	42	0.211
43	43	0.528
44	44	0.861
45	45	0.109
46	46	0.651
47	47	0.443
48	48	0.746
49	49	0.0929
5	5	0.731
50	50	0.459
51	51	0.931
52	52	0.79
53	53	0.19
54	54	0.885
55	55	0.959
56	56	0.825
57	57	0.583
58	58	0.196
59	59	0.28
6	6	0.663
60	60	0.552
61	61	0.226
62	62	0.249
63	63	0.908
64	64	0.749
65	65	0.644
66	66	0.17
67	67	0.567
68	68	0.811
69	69	0.684
7	7	0.772
70	70	0.0918
71	71	0.169
72	72	0.586
73	73	0.928
74	74	0.758
75	75	0.0215
76	76	0.0368
77	77	0.00714
78	78	0.582
79	79	0.598
8	8	0.588
80	80	0.244
81	81	0.741
82	82	0.449
83	83	0.901
84	84	0.0637
85	85	0.891
86	86	0.0808
87	87	0.449
88	88	0.897
89	89	0.00465
9	9	0.445
90	90	0.262
91	91	0.467
92	92	0.616
93	93	0.377
94	94	0.447
95	95	0.278
96	96	0.856
97	97	0.279
98	98	0.274
99	99	1.05599e-4

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11955

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000031 CD4-positive T cell sample
FF:0000210 human sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000791 (mature alpha-beta T cell)
0000084 (T cell)
0000789 (alpha-beta T cell)
0002419 (mature T cell)
0000624 (CD4-positive, alpha-beta T cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000031 (CD4-positive T cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)
CL:0000790 (immature alpha-beta T cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008070
+|DRA_sample_Accession=CAGE@SAMD00005976
-|accession_numbers=CAGE;DRX008177;DRR009049;DRZ000474;DRZ001859
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005976
+|accession_numbers=CAGE;DRX008177;DRR009049;DRZ000474;DRZ001859;DRZ011824;DRZ013209
+|accession_numbers_RNASeq=sRNA-Seq;DRX037136;DRR041502;DRZ007144
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000791,CL:0000084,CL:0000789,CL:0002419,CL:0000624
@@ Line 9: / Line 11: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr19:45971246..45971265,+!p1@FOSB!2.07!2043.66!FOSB;;chr1:25256756..25256774,-!p1@RUNX3!2.06!205.94!RUNX3;;chr2:157189180..157189290,-!p1@NR4A2!1.97!461.00!NR4A2;;chr10:8096631..8096660,+!p1@GATA3!1.97!109.65!GATA3;;chr14:75746722..75746777,+!p2@FOS!1.93!107.68!FOS;;chr3:63953435..63953499,+!p1@ATXN7!1.93!84.89!ATXN7;;chr5:133451294..133451310,+!p2@TCF7!1.92!82.53!TCF7;;chr7:50343634..50343717,+!p2@IKZF1!1.87!73.10!IKZF1;;chr5:133450365..133450444,+!p1@TCF7!1.86!307.33!TCF7;;chr19:54058073..54058088,+!p1@ZNF331!1.86!70.74!ZNF331;;chr2:192015701..192015743,-!p1@STAT4!1.83!90.00!STAT4;;chr10:8096772..8096787,+!p2@GATA3!1.83!78.21!GATA3;;chr15:60884706..60884743,-!p1@RORA!1.81!311.66!RORA;;chr14:75745523..75745537,+!p1@FOS!1.80!6940.57!FOS;;chr9:102584262..102584276,+!p1@NR4A3!1.79!131.27!NR4A3;;chr20:50159198..50159299,-!p1@NFATC2!1.76!82.14!NFATC2;;chr6:91006518..91006570,-!p1@BACH2!1.75!124.19!BACH2;;chrX:106960285..106960299,-!p1@TSC22D3!1.74!1359.42!TSC22D3;;chr19:54041669..54041697,+!p2@ZNF331!1.72!51.09!ZNF331;;chr9:3525727..3525828,-!p2@RFX3!1.69!117.51!RFX3;;chr2:231090433..231090469,+!p1@SP140!1.67!45.59!SP140;;chrY:21906594..21906622,-!p1@KDM5D!1.61!39.30!KDM5D;;chr3:71355163..71355209,-!p5@FOXP1!1.60!52.66!FOXP1;;chr19:16435625..16435682,+!p1@KLF2!1.58!1123.22!KLF2;;chr3:39195075..39195088,-!p1@CSRNP1!1.58!219.69!CSRNP1;;chr19:19729477..19729542,-!p1@PBX4!1.54!70.35!PBX4;;chr3:18486354..18486377,-!p2@SATB1!1.54!42.05!SATB1;;chr17:38020392..38020477,-!p1@IKZF3!1.54!33.80!IKZF3;;chr19:16435423..16435484,+!p5@KLF2!1.54!33.41!KLF2;;chr10:3824332..3824425,-!p4@KLF6!1.53!52.27!KLF6;;chr4:109087445..109087463,-!p1@LEF1!1.52!31.83!LEF1;;chr9:102584241..102584261,+!p4@NR4A3!1.50!46.77!NR4A3;;chrX:106960180..106960197,-!p2@TSC22D3!1.49!109.65!TSC22D3;;chr10:35484053..35484076,+!p1@CREM!1.48!71.53!CREM;;chr6:106546808..106546833,+!p3@PRDM1!1.48!36.55!PRDM1;;chr2:192015750..192015793,-!p2@STAT4!1.46!37.34!STAT4;;chr19:12902289..12902307,+!p1@JUNB!1.45!5871.97!JUNB;;chr1:59249688..59249703,-!p3@JUN!1.45!157.99!JUN;;chr7:50343895..50343936,+!p5@IKZF1!1.44!26.72!IKZF1;;chr3:71542615..71542644,-!p12@FOXP1!1.43!25.94!FOXP1;;chr9:117150254..117150271,-!p1@AKNA!1.42!67.99!AKNA;;chr6:391743..391759,+!p1@IRF4!1.42!25.15!IRF4;;chr7:104654718..104654741,+!p3@MLL5!1.41!35.76!MLL5;;chr12:72056800..72056834,+!p1@THAP2!1.41!33.41!THAP2;;chr8:123793988..123794016,+!p1@ZHX2!1.40!41.66!ZHX2;;chr2:157189617..157189667,-!p4@NR4A2!1.40!24.37!NR4A2;;chr9:102584128..102584144,+!p3@NR4A3!1.39!44.02!NR4A3;;chr14:35873947..35873965,-!p1@NFKBIA!1.38!1382.61!NFKBIA;;chr3:71542684..71542720,-!p18@FOXP1!1.38!23.19!FOXP1;;chr5:131826457..131826514,-!p1@IRF1!1.37!843.40!IRF1;;chr11:67007548..67007610,+!p3@KDM2A!1.37!161.53!KDM2A;;chr6:12009042..12009092,+!p6@HIVEP1!1.37!28.69!HIVEP1;;chr4:109090075..109090095,-!p2@LEF1!1.37!22.40!LEF1;;chr14:99738138..99738163,-!p1@BCL11B!1.37!22.40!BCL11B;;chr3:23986824..23986848,+!p2@NR1D2!1.36!119.08!NR1D2;;chr14:64971288..64971316,-!p2@ZBTB25!1.36!66.03!ZBTB25;;chr6:91006575..91006602,-!p2@BACH2!1.36!32.23!BACH2;;chr8:81397846..81397860,+!p3@ZBTB10!1.36!27.12!ZBTB10;;chr17:38497662..38497713,+!p4@RARA!1.36!25.15!RARA;;chr4:103422499..103422632,+!p1@NFKB1!1.35!429.56!NFKB1;;chrX:106960221..106960236,-!p3@TSC22D3!1.35!58.56!TSC22D3;;chr14:35872453..35872485,-!p2@NFKBIA!1.35!51.48!NFKBIA;;chr2:43453734..43453751,-!p1@ZFP36L2!1.34!2125.40!ZFP36L2;;chr15:60884747..60884774,-!p3@RORA!1.34!50.31!RORA;;chr2:97202480..97202499,+!p1@ARID5A!1.33!200.44!ARID5A;;chr19:54041645..54041661,+!p5@ZNF331!1.33!20.44!ZNF331;;chr20:51588873..51588953,+!p1@TSHZ2!1.32!26.33!TSHZ2;;chr3:71542651..71542683,-!p22@FOXP1!1.31!19.26!FOXP1;;chr1:59249707..59249727,-!p1@JUN!1.30!767.94!JUN;;chr7:104654690..104654704,+!p2@MLL5!1.30!36.94!MLL5;;chr8:81397820..81397836,+!p2@ZBTB10!1.29!23.19!ZBTB10;;chr5:133451347..133451358,+!p3@TCF7!1.29!18.47!TCF7;;chr18:46475696..46475713,-!p1@SMAD7!1.28!20.44!SMAD7;;chr7:17338324..17338341,+!p3@AHR!1.27!57.77!AHR;;chr1:91487774..91487802,-!p2@ZNF644!1.27!45.59!ZNF644;;chr1:45805693..45805718,+!p3@TOE1!1.27!37.34!TOE1;;chr14:64970670..64970712,-!p3@ZBTB25!1.27!37.34!ZBTB25;;chr17:45810594..45810608,+!p1@TBX21!1.26!17.29!TBX21;;chr2:231090471..231090504,+!p2@SP140!1.26!17.29!SP140;;chr18:77155922..77155939,+!p1@NFATC1!1.23!43.23!NFATC1;;chr14:99738059..99738086,-!p2@BCL11B!1.23!16.11!BCL11B;;chr4:103498623..103498650,+!p9@NFKB1!1.23!16.11!NFKB1;;chr10:3827389..3827408,-!p1@KLF6!1.22!1177.85!KLF6;;chr13:74707894..74707947,-!p6@KLF12!1.22!17.29!KLF12;;chr2:192015677..192015691,-!p3@STAT4!1.21!15.33!STAT4;;chr3:18487057..18487105,-!p4@SATB1!1.21!15.33!SATB1;;chr13:41240717..41240735,-!p2@FOXO1!1.20!99.43!FOXO1;;chr3:39195037..39195069,-!p2@CSRNP1!1.20!90.39!CSRNP1;;chr21:36421535..36421610,-!p2@RUNX1!1.20!52.27!RUNX1;;chr14:35874077..35874091,-!p8@NFKBIA!1.20!14.93!NFKBIA;;chr14:75988831..75988847,+!p2@BATF!1.20!14.93!BATF;;chr4:38665769..38665801,+!p2@KLF3!1.19!128.51!KLF3;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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000084;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000624;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000789;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
 |ffid_belonging_in_development=CL:0000134,CL:0000051,CL:0000790
 |fonse_cell_line=
@@ Line 41: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252b%2520T%2520Cells%252c%2520donor2.CNhs11955.11306-117C1.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252b%2520T%2520Cells%252c%2520donor2.CNhs11955.11306-117C1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252b%2520T%2520Cells%252c%2520donor2.CNhs11955.11306-117C1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252b%2520T%2520Cells%252c%2520donor2.CNhs11955.11306-117C1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252b%2520T%2520Cells%252c%2520donor2.CNhs11955.11306-117C1.hg38.nobarcode.ctss.bed.gz
 |id=FF:11306-117C1
 |is_a=EFO:0002091;;FF:0000031;;FF:0000210
 |is_obsolete=
 |library_id=CNhs11955
-|library_id_phase_based=1:CNhs11955
+|library_id_phase_based=2:CNhs11955
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11306
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10009.CTTGTA.11306
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11306
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10009.CTTGTA.11306
 |name=CD4+ T Cells, donor2
 |namespace=FANTOM5
@@ Line 51: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11955,LSID836,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10009,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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@@ Line 67: / Line 82: @@
 |rna_tube_id=117C1
 |rna_weight_ug=10
+|rnaseq_library_id=SRhi10009.CTTGTA
 |sample_age=57
 |sample_category=primary cells
@@ Line 90: / Line 106: @@
 |top_motifs=PITX1..3:3.76748161535;FOX{D1,D2}:3.33747208357;PAX3,7:3.2424757632;BPTF:3.22719722364;CREB1:3.18441851256;ZBTB16:3.13075750659;FOXP1:3.10521665664;ATF4:3.00714692119;ATF5_CREB3:2.70734267244;RORA:2.69300340595;NKX6-1,2:2.58630877255;RFX2..5_RFXANK_RFXAP:2.57756131989;FOXO1,3,4:2.49023030245;RUNX1..3:2.44663582031;TOPORS:2.43664595371;CDX1,2,4:2.32625295977;FOXN1:2.29137633295;FOX{F1,F2,J1}:2.25432862372;IKZF2:2.10632344122;NFKB1_REL_RELA:1.92487469291;RFX1:1.74992337337;ELF1,2,4:1.73310744319;PAX2:1.69501502912;DMAP1_NCOR{1,2}_SMARC:1.68951782979;PAX4:1.64257183886;ETS1,2:1.45748122149;NKX2-1,4:1.43736876876;HMX1:1.43491453099;AIRE:1.41269380195;BREu{core}:1.40965051082;LEF1_TCF7_TCF7L1,2:1.31506612219;JUN:1.25791550514;SPI1:1.25710328027;T:1.17952281579;ATF2:1.10514154122;ATF6:1.09252165512;TGIF1:1.07033419591;TBX4,5:1.06973480771;FOX{I1,J2}:1.06720152498;ZNF384:0.969292505206;SPIB:0.85217449414;NKX3-1:0.84541729239;HBP1_HMGB_SSRP1_UBTF:0.803152569042;IRF1,2:0.76909582363;RREB1:0.724842329354;NFIL3:0.701270802505;HIF1A:0.699015852697;FOXD3:0.683830451432;HOXA9_MEIS1:0.682531920314;EGR1..3:0.654744215404;PAX6:0.586136129616;GATA6:0.522271142375;TLX2:0.472733692273;EP300:0.449994385756;ZEB1:0.44341794563;POU3F1..4:0.40754592559;NFATC1..3:0.406258156669;SMAD1..7,9:0.39927223307;MAFB:0.380662011939;HOX{A6,A7,B6,B7}:0.365938600324;NFE2L1:0.342138715566;NANOG{mouse}:0.322244490093;SOX5:0.294444868317;SREBF1,2:0.292768936843;HMGA1,2:0.267147179515;PDX1:0.262980205445;MYB:0.237497274314;SNAI1..3:0.215619599162;NFIX:0.203518097929;CUX2:0.132869625896;FOSL2:0.116010450664;SPZ1:0.113669351639;POU2F1..3:0.0873189688221;MYFfamily:0.0831515126348;IRF7:0.0567673224198;FOXQ1:0.049214840308;FOXP3:0.0254381274744;AHR_ARNT_ARNT2:0.0202902299843;FOS_FOS{B,L1}_JUN{B,D}:0.019953161362;SOX2:-0.0320005634328;CRX:-0.0486080603181;NR5A1,2:-0.0573322810873;EVI1:-0.0826529481661;ELK1,4_GABP{A,B1}:-0.0879207672844;STAT5{A,B}:-0.0931217976956;LMO2:-0.100384521994;DBP:-0.144112284995;STAT2,4,6:-0.161253660771;PBX1:-0.16126644093;BACH2:-0.16735391253;HES1:-0.176353228974;FOXM1:-0.188569451716;MED-1{core}:-0.213156437969;PPARG:-0.223750369705;MTE{core}:-0.307526321299;E2F1..5:-0.314024215206;FOXL1:-0.319218658348;NKX2-2,8:-0.323673782577;POU1F1:-0.333322434598;YY1:-0.372167976173;NFE2:-0.384597227705;GCM1,2:-0.395740234754;CEBPA,B_DDIT3:-0.420374497119;UFEwm:-0.42264343335;HNF4A_NR2F1,2:-0.430233915604;GATA4:-0.453476329176;NR6A1:-0.464103799217;AR:-0.484960400864;OCT4_SOX2{dimer}:-0.491470328321;NRF1:-0.5184021076;SRF:-0.521863214937;MZF1:-0.532630484064;NFY{A,B,C}:-0.540230233864;ZFP161:-0.543421957915;TFDP1:-0.550608664231;bHLH_family:-0.604921833602;ALX4:-0.61245101332;MYOD1:-0.617923604365;ZBTB6:-0.663890429885;RXRA_VDR{dimer}:-0.670084447274;PAX5:-0.701738627638;HNF1A:-0.711744951135;GLI1..3:-0.780541022607;HLF:-0.812062941653;NFE2L2:-0.833463591013;STAT1,3:-0.834298324604;PATZ1:-0.863167576922;NHLH1,2:-0.866753990465;HAND1,2:-0.872448267738;TAL1_TCF{3,4,12}:-0.881141449221;SOX{8,9,10}:-0.917831815418;FOXA2:-0.948743783117;PRRX1,2:-0.964028826726;TFAP2B:-0.979418850726;POU6F1:-0.999442750987;NANOG:-1.00612535314;ONECUT1,2:-1.00833854872;MTF1:-1.00889825486;REST:-1.02072849633;RBPJ:-1.0441438962;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.05263970815;ZNF423:-1.08199280579;MEF2{A,B,C,D}:-1.09286388893;PAX8:-1.0933435722;ARID5B:-1.16489957486;TFAP4:-1.18313586941;ZNF143:-1.19897367129;ZIC1..3:-1.21661974399;LHX3,4:-1.26182896437;TEF:-1.27174576936;TFAP2{A,C}:-1.28665105149;MAZ:-1.30138020792;ALX1:-1.30175200996;SOX17:-1.32109216943;SP1:-1.34894884126;MYBL2:-1.3542980229;TBP:-1.36377240612;XBP1:-1.37738444422;GFI1B:-1.40746578734;GFI1:-1.480651115;CDC5L:-1.48829779966;HIC1:-1.51530876627;POU5F1:-1.57819188516;HOX{A5,B5}:-1.58246540508;NR1H4:-1.60630866474;XCPE1{core}:-1.60997815662;HSF1,2:-1.64141519622;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.65002444781;TP53:-1.65969122936;PRDM1:-1.66327058219;ZNF238:-1.67550988772;TFCP2:-1.68470669872;NKX2-3_NKX2-5:-1.7036846249;ADNP_IRX_SIX_ZHX:-1.70775823548;TEAD1:-1.72299979456;TLX1..3_NFIC{dimer}:-1.74099136856;KLF4:-1.78612101907;GTF2A1,2:-1.82598543425;GTF2I:-1.86496625654;ZNF148:-1.94069867522;NKX3-2:-1.95091448313;VSX1,2:-1.97673980089;HOX{A4,D4}:-2.00383992988;EN1,2:-2.09727547897;RXR{A,B,G}:-2.15806245002;ESR1:-2.17892488408;ESRRA:-2.18888128933;GZF1:-2.20938519516;EBF1:-2.28316104604;IKZF1:-2.58281045826;NR3C1:-3.03722478138;PAX1,9:-3.0730478509
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11306-117C1;search_select_hide=table117:FF:11306-117C1
 }}

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FF:11306-117C1: Difference between revisions

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Latest revision as of 16:32, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0