FF:11758-123H3: Difference between revisions

Latest revision as of 18:18, 4 June 2020

Name:	mesenchymal precursor cell - ovarian cancer metastasis, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs12374
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	ovary
dev stage	NA
sex	NA
age	NA
cell type	mesenchymal precursor cell
cell line	NA
company	NA
collaboration	Claudio Schneider LNCIB
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005281

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12374		CAGE		DRX008559		DRR009431

Accession ID Hg19

Library id		BAM		CTSS
CNhs12374		DRZ000856		DRZ002241

Accession ID Hg38

Library id		BAM		CTSS
CNhs12374		DRZ012206		DRZ013591

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0579
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.151
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.367
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.106
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.112
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.562
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.0574
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.184
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.395
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	-0.00244
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.185
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.185
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0278
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.293
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.255
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.102
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.457
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.594
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.594
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	1.013
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.649
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.0607
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.94
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12374

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.613
MA0003.1	MA0003.1	0.675
MA0004.1	MA0004.1	0.0856
MA0006.1	MA0006.1	0.162
MA0007.1	MA0007.1	0.647
MA0009.1	MA0009.1	0.362
MA0014.1	MA0014.1	0.946
MA0017.1	MA0017.1	0.62
MA0018.2	MA0018.2	2.80736e-6
MA0019.1	MA0019.1	0.477
MA0024.1	MA0024.1	1.47861e-6
MA0025.1	MA0025.1	0.00452
MA0027.1	MA0027.1	0.369
MA0028.1	MA0028.1	0.304
MA0029.1	MA0029.1	0.435
MA0030.1	MA0030.1	0.00862
MA0031.1	MA0031.1	0.0421
MA0035.2	MA0035.2	0.0741
MA0038.1	MA0038.1	0.00466
MA0039.2	MA0039.2	0.0826
MA0040.1	MA0040.1	0.593
MA0041.1	MA0041.1	0.846
MA0042.1	MA0042.1	0.754
MA0043.1	MA0043.1	4.66775e-6
MA0046.1	MA0046.1	0.0863
MA0047.2	MA0047.2	0.528
MA0048.1	MA0048.1	0.107
MA0050.1	MA0050.1	0.0268
MA0051.1	MA0051.1	0.28
MA0052.1	MA0052.1	0.0261
MA0055.1	MA0055.1	0.366
MA0057.1	MA0057.1	0.0923
MA0058.1	MA0058.1	0.0346
MA0059.1	MA0059.1	0.842
MA0060.1	MA0060.1	1.19159e-11
MA0061.1	MA0061.1	0.793
MA0062.2	MA0062.2	2.80341e-4
MA0065.2	MA0065.2	0.168
MA0066.1	MA0066.1	0.307
MA0067.1	MA0067.1	0.0104
MA0068.1	MA0068.1	0.0653
MA0069.1	MA0069.1	0.346
MA0070.1	MA0070.1	0.46
MA0071.1	MA0071.1	0.719
MA0072.1	MA0072.1	0.567
MA0073.1	MA0073.1	0.831
MA0074.1	MA0074.1	0.403
MA0076.1	MA0076.1	0.134
MA0077.1	MA0077.1	0.229
MA0078.1	MA0078.1	0.706
MA0079.2	MA0079.2	0.347
MA0080.2	MA0080.2	2.74906e-7
MA0081.1	MA0081.1	0.0116
MA0083.1	MA0083.1	0.00182
MA0084.1	MA0084.1	0.978
MA0087.1	MA0087.1	0.681
MA0088.1	MA0088.1	0.86
MA0090.1	MA0090.1	0.00462
MA0091.1	MA0091.1	0.226
MA0092.1	MA0092.1	0.217
MA0093.1	MA0093.1	0.14
MA0099.2	MA0099.2	6.69172e-5
MA0100.1	MA0100.1	0.478
MA0101.1	MA0101.1	0.19
MA0102.2	MA0102.2	0.0125
MA0103.1	MA0103.1	0.0568
MA0104.2	MA0104.2	0.0318
MA0105.1	MA0105.1	0.204
MA0106.1	MA0106.1	0.023
MA0107.1	MA0107.1	0.431
MA0108.2	MA0108.2	0.468
MA0111.1	MA0111.1	0.382
MA0112.2	MA0112.2	0.0121
MA0113.1	MA0113.1	0.466
MA0114.1	MA0114.1	0.3
MA0115.1	MA0115.1	0.118
MA0116.1	MA0116.1	0.303
MA0117.1	MA0117.1	0.931
MA0119.1	MA0119.1	0.029
MA0122.1	MA0122.1	0.317
MA0124.1	MA0124.1	0.106
MA0125.1	MA0125.1	0.0197
MA0131.1	MA0131.1	0.305
MA0135.1	MA0135.1	0.0894
MA0136.1	MA0136.1	1.81859e-7
MA0137.2	MA0137.2	0.594
MA0138.2	MA0138.2	0.989
MA0139.1	MA0139.1	0.283
MA0140.1	MA0140.1	0.4
MA0141.1	MA0141.1	0.65
MA0142.1	MA0142.1	0.207
MA0143.1	MA0143.1	0.945
MA0144.1	MA0144.1	0.68
MA0145.1	MA0145.1	0.48
MA0146.1	MA0146.1	0.555
MA0147.1	MA0147.1	0.184
MA0148.1	MA0148.1	0.849
MA0149.1	MA0149.1	0.4
MA0150.1	MA0150.1	0.329
MA0152.1	MA0152.1	0.0967
MA0153.1	MA0153.1	0.624
MA0154.1	MA0154.1	0.338
MA0155.1	MA0155.1	0.273
MA0156.1	MA0156.1	8.40111e-4
MA0157.1	MA0157.1	0.256
MA0159.1	MA0159.1	0.961
MA0160.1	MA0160.1	0.149
MA0162.1	MA0162.1	0.0821
MA0163.1	MA0163.1	0.0237
MA0164.1	MA0164.1	0.666
MA0258.1	MA0258.1	0.412
MA0259.1	MA0259.1	0.55

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12374

Novel motif	Logo	P-value
1	1	0.421
10	10	0.712
100	100	0.527
101	101	0.761
102	102	0.494
103	103	0.206
104	104	0.972
105	105	0.281
106	106	0.0697
107	107	0.0294
108	108	0.288
109	109	0.384
11	11	0.238
110	110	0.103
111	111	0.8
112	112	0.33
113	113	0.0211
114	114	0.0865
115	115	0.134
116	116	0.11
117	117	0.509
118	118	0.852
119	119	0.472
12	12	0.285
120	120	0.15
121	121	0.749
122	122	0.0936
123	123	0.00198
124	124	0.674
125	125	0.655
126	126	0.811
127	127	0.296
128	128	0.0737
129	129	0.852
13	13	0.959
130	130	0.386
131	131	0.135
132	132	0.398
133	133	0.45
134	134	0.343
135	135	0.947
136	136	0.623
137	137	0.607
138	138	0.763
139	139	0.278
14	14	0.203
140	140	0.657
141	141	0.263
142	142	0.612
143	143	0.0874
144	144	0.541
145	145	0.485
146	146	0.814
147	147	0.0605
148	148	0.534
149	149	0.174
15	15	0.486
150	150	0.134
151	151	0.767
152	152	0.0547
153	153	0.367
154	154	0.977
155	155	0.0279
156	156	0.511
157	157	0.572
158	158	0.0407
159	159	0.159
16	16	0.0211
160	160	0.494
161	161	0.49
162	162	0.572
163	163	0.231
164	164	0.0823
165	165	0.88
166	166	0.0646
167	167	0.864
168	168	0.683
169	169	0.121
17	17	0.168
18	18	0.092
19	19	0.0629
2	2	0.649
20	20	0.586
21	21	0.469
22	22	0.357
23	23	0.0208
24	24	0.952
25	25	0.256
26	26	0.455
27	27	0.467
28	28	0.404
29	29	0.0935
3	3	0.299
30	30	0.629
31	31	0.561
32	32	5.50552e-10
33	33	0.76
34	34	0.85
35	35	0.441
36	36	0.0496
37	37	0.026
38	38	0.614
39	39	0.21
4	4	0.792
40	40	0.339
41	41	0.88
42	42	0.872
43	43	0.203
44	44	0.197
45	45	0.907
46	46	0.182
47	47	0.754
48	48	0.542
49	49	0.994
5	5	0.555
50	50	0.831
51	51	0.974
52	52	0.927
53	53	0.0596
54	54	0.811
55	55	0.112
56	56	0.928
57	57	0.914
58	58	0.519
59	59	0.178
6	6	0.536
60	60	0.701
61	61	0.689
62	62	0.576
63	63	0.424
64	64	0.73
65	65	0.439
66	66	0.29
67	67	0.293
68	68	0.995
69	69	0.47
7	7	0.226
70	70	0.171
71	71	0.383
72	72	0.906
73	73	0.0215
74	74	0.0991
75	75	0.362
76	76	0.593
77	77	0.0673
78	78	0.688
79	79	0.00473
8	8	0.0627
80	80	0.935
81	81	0.543
82	82	0.419
83	83	0.877
84	84	0.67
85	85	0.0947
86	86	0.948
87	87	0.282
88	88	0.883
89	89	0.0271
9	9	0.469
90	90	0.433
91	91	0.514
92	92	0.0386
93	93	0.995
94	94	0.385
95	95	0.225
96	96	0.803
97	97	0.204
98	98	0.0591
99	99	0.00312

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12374

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000274 human mesenchymal precursor cell- ovarian cancer-metastasis sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
193 (reproductive organ cancer)
2394 (ovarian cancer)
120 (female reproductive organ cancer)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000272 (human ovarian cancer mesenchymal precursor cell sample)
0000274 (human mesenchymal precursor cell- ovarian cancer-metastasis sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008451
+|DRA_sample_Accession=CAGE@SAMD00005281
-|accession_numbers=CAGE;DRX008559;DRR009431;DRZ000856;DRZ002241
+|accession_numbers=CAGE;DRX008559;DRR009431;DRZ000856;DRZ002241;DRZ012206;DRZ013591
 |ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.33!20.47!ZBED1;;chr11:46299199..46299233,+!p1@CREB3L1!1.21!78.16!CREB3L1;;chr9:96717629..96717644,-!p1@BARX1!1.20!14.89!BARX1;;chr18:19749386..19749404,+!p2@GATA6!1.15!18.61!GATA6;;chr21:36260773..36260804,-!p7@RUNX1!1.15!17.55!RUNX1;;chr12:66218598..66218645,+!p2@HMGA2!1.13!57.16!HMGA2;;chr1:170632285..170632309,+!p1@PRRX1!1.06!11.96!PRRX1;;chr11:61520075..61520136,+!p1@C11orf9!1.02!20.20!C11orf9;;chr16:31076332..31076388,-!p3@ZNF668!1.01!9.30!ZNF668;;chr17:46622070..46622109,-!p1@HOXB2!0.96!18.61!HOXB2;;chr5:142780189..142780223,-!p6@NR3C1!0.95!7.98!NR3C1;;chr7:44143925..44143970,+!p1@AEBP1!0.94!179.71!AEBP1;;chr15:96874927..96874938,+!p8@NR2F2!0.94!17.01!NR2F2;;chr17:46682321..46682362,-!p1@HOXB6!0.94!7.71!HOXB6;;chr1:151032860..151032918,+!p1@MLLT11!0.93!92.51!MLLT11;;chr3:5021268..5021282,+!p4@BHLHE40!0.93!15.68!BHLHE40;;chr4:174450089..174450153,-!p2@HAND2!0.93!7.44!HAND2;;chr6:134210243..134210257,+!p1@TCF21!0.93!7.44!TCF21;;chr12:66218255..66218304,+!p3@HMGA2!0.91!19.67!HMGA2;;chr7:1577899..1577943,+!p3@MAFK!0.91!7.18!MAFK;;chr18:19749541..19749557,+!p1@GATA6!0.90!22.60!GATA6;;chr11:46299539..46299620,+!p2@CREB3L1!0.90!11.96!CREB3L1;;chr11:65687362..65687436,+!p3@DRAP1!0.88!31.64!DRAP1;;chr15:83953397..83953425,-!p1@BNC1!0.88!7.71!BNC1;;chr10:64576105..64576133,-!p1@EGR2!0.87!13.56!EGR2;;chr9:96717678..96717689,-!p2@BARX1!0.87!6.38!BARX1;;chr7:26191809..26191890,+!p1@NFE2L3!0.86!32.96!NFE2L3;;chr17:46655704..46655718,-!p2@HOXB4!0.86!9.57!HOXB4;;chr7:44143978..44143989,+!p2@AEBP1!0.85!11.43!AEBP1;;chr12:26277817..26277863,-!p2@BHLHE41!0.85!8.51!BHLHE41;;chr2:102091566..102091581,-!p1@RFX8!0.85!6.11!RFX8;;chr17:46675420..46675465,-!p3@HOXB6!0.84!6.91!HOXB6;;chr12:54447637..54447659,+!p4@HOXC4!0.84!5.85!HOXC4;;chr8:72756063..72756125,-!p1@MSC!0.83!12.23!MSC;;chr15:96874145..96874166,+!p7@NR2F2!0.82!11.17!NR2F2;;chr17:46621146..46621180,-!p10@HOXB2!0.82!5.58!HOXB2;;chr17:46687959..46688007,-!p2@HOXB7!0.81!7.71!HOXB7;;chr5:72744445..72744466,-!p2@FOXD1!0.80!9.30!FOXD1;;chr7:27183263..27183284,-!p2@HOXA5!0.80!5.32!HOXA5;;chr8:55370487..55370503,+!p1@SOX17!0.80!5.32!SOX17;;chr17:46621279..46621297,-!p13@HOXB2!0.80!5.32!HOXB2;;chr7:44143997..44144008,+!p3@AEBP1!0.78!6.65!AEBP1;;chr17:46690839..46690884,-!p1@HOXB8!0.78!5.05!HOXB8;;chr15:96869255..96869291,+!p6@NR2F2!0.77!9.30!NR2F2;;chr8:72756267..72756296,-!p4@MSC!0.77!7.44!MSC;;chr21:36421535..36421610,-!p2@RUNX1!0.76!18.34!RUNX1;;chr7:27183291..27183324,-!p1@HOXA5!0.76!4.79!HOXA5;;chr5:72744594..72744609,-!p1@FOXD1!0.75!23.13!FOXD1;;chr11:65686732..65686756,+!p2@DRAP1!0.75!21.27!DRAP1;;chr12:54447599..54447630,+!p3@HOXC4!0.75!5.85!HOXC4;;chr5:92918919..92918942,+!p1@NR2F1!0.74!22.33!NR2F1;;chr2:239756671..239756732,+!p1@TWIST2!0.74!15.68!TWIST2;;chr11:46299186..46299195,+!p3@CREB3L1!0.74!5.05!CREB3L1;;chr17:46688334..46688385,-!p1@HOXB7!0.73!6.65!HOXB7;;chr12:66218836..66218888,+!p1@HMGA2!0.72!44.13!HMGA2;;chr5:137804484..137804498,+!p2@EGR1!0.72!18.87!EGR1;;chr1:170632959..170632987,+!p4@PRRX1!0.72!4.79!PRRX1;;chr12:54394416..54394467,+!p5@HOXC9!0.72!4.25!HOXC9;;chr19:45908292..45908374,-!p1@PPP1R13L!0.71!40.94!PPP1R13L;;chr1:170633348..170633399,+!p2@PRRX1!0.71!5.85!PRRX1;;chr17:46621101..46621143,-!p7@HOXB2!0.70!5.58!HOXB2;;chr16:54320617..54320643,-!p3@IRX3!0.70!5.32!IRX3;;chr20:50179368..50179392,-!p2@NFATC2!0.70!5.32!NFATC2;;chr2:102091478..102091490,-!p3@RFX8!0.70!3.99!RFX8;;chr4:174451370..174451387,-!p1@HAND2!0.70!3.99!HAND2;;chr5:142780237..142780261,-!p7@NR3C1!0.70!3.99!NR3C1;;chr12:54394309..54394336,+!p2@HOXC9!0.70!3.99!HOXC9;;chr12:80085061..80085119,-!p6@PAWR!0.69!6.65!PAWR;;chr21:36260295..36260310,-!p3@RUNX1!0.69!6.65!RUNX1;;chr17:46622114..46622138,-!p4@HOXB2!0.69!6.38!HOXB2;;chr15:96881221..96881240,+!p19@NR2F2!0.69!5.32!NR2F2;;chr5:92918956..92918969,+!p4@NR2F1!0.68!4.25!NR2F1;;chr12:77459306..77459365,-!p1@E2F7!0.67!53.70!E2F7;;chr15:96874216..96874236,+!p13@NR2F2!0.67!6.11!NR2F2;;chr16:86544113..86544145,+!p1@FOXF1!0.67!4.79!FOXF1;;chr1:170632250..170632277,+!p7@PRRX1!0.67!3.72!PRRX1;;chr7:19157043..19157088,-!p2@TWIST1!0.66!10.10!TWIST1;;chr21:36260343..36260402,-!p6@RUNX1!0.66!6.11!RUNX1;;chr19:31840130..31840160,-!p2@TSHZ3!0.66!5.85!TSHZ3;;chr10:63809106..63809127,+!p1@ARID5B!0.65!55.03!ARID5B;;chr15:96874012..96874042,+!p2@NR2F2!0.65!36.69!NR2F2;;chr3:141087393..141087426,+!p3@ZBTB38!0.65!15.95!ZBTB38;;chr21:30671690..30671762,+!p2@BACH1!0.65!13.56!BACH1;;chr15:96874244..96874259,+!p5@NR2F2!0.65!9.30!NR2F2;;chr17:46675558..46675577,-!p2@HOXB6!0.65!3.46!HOXB6;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.65!3.46!HOXC5;;chr12:80085120..80085156,-!p14@PAWR!0.65!3.46!PAWR;;chr19:45971246..45971265,+!p1@FOSB!0.64!73.90!FOSB;;chr1:151032922..151032951,+!p2@MLLT11!0.64!6.11!MLLT11;;chr12:66218378..66218401,+!p6@HMGA2!0.64!5.58!HMGA2;;chr15:96869114..96869160,+!p11@NR2F2!0.64!4.79!NR2F2;;chr19:42636586..42636607,-!p1@POU2F2!0.63!10.37!POU2F2;;chr1:151032833..151032850,+!p3@MLLT11!0.63!8.24!MLLT11;;chr17:1959369..1959388,+!p2@HIC1!0.62!9.57!HIC1;;chr8:72756667..72756736,-!p2@MSC!0.62!5.32!MSC;;chr8:25902876..25902936,-!p1@EBF2!0.62!3.19!EBF2;;chr1:170632723..170632739,+!p8@PRRX1!0.62!3.19!PRRX1;;chr2:45236540..45236577,-!p1@SIX2!0.62!3.19!SIX2;;chr3:141087454..141087465,+!p19@ZBTB38!0.62!3.19!ZBTB38;;chr11:46333934..46333963,+!p5@CREB3L1!0.62!3.19!CREB3L1;;chr11:65687158..65687216,+!p4@DRAP1!0.61!21.00!DRAP1;;chr1:151032739..151032748,+!p6@MLLT11!0.61!3.99!MLLT11;;chr2:239756739..239756755,+!p2@TWIST2!0.60!5.58!TWIST2;;chr11:65687222..65687240,+!p7@DRAP1!0.60!3.99!DRAP1;;chr12:66218443..66218461,+!p8@HMGA2!0.60!3.99!HMGA2;;chr15:76629097..76629120,+!p2@ISL2!0.60!3.46!ISL2;;chr12:124873357..124873401,-!p1@NCOR2!0.59!40.41!NCOR2;;chr8:49833948..49833973,-!p2@SNAI2!0.59!22.33!SNAI2;;chr2:145275162..145275202,-!p2@ZEB2!0.59!20.47!ZEB2;;chr15:96869292..96869320,+!p15@NR2F2!0.59!4.52!NR2F2;;chr12:66218904..66218913,+!p11@HMGA2!0.59!2.92!HMGA2;;chr9:16705069..16705086,-!p3@BNC2!0.59!2.92!BNC2;;chr1:8934931..8934947,-!p4@ENO1!0.58!10.90!ENO1;;chr17:46621937..46621966,-!p2@HOXB2!0.58!8.77!HOXB2;;chr1:221052776..221052799,+!p1@HLX!0.58!5.58!HLX;;chr12:26277929..26277955,-!p3@BHLHE41!0.58!4.25!BHLHE41;;chr1:8938709..8938720,-!p3@ENO1!0.57!163.49!ENO1;;chr15:96873984..96873999,+!p3@NR2F2!0.57!24.19!NR2F2;;chr1:170633262..170633285,+!p3@PRRX1!0.57!3.19!PRRX1;;chr8:49833978..49833996,-!p1@SNAI2!0.56!68.06!SNAI2;;chr7:14029283..14029311,-!p1@ETV1!0.56!17.01!ETV1;;chr19:47922750..47922795,-!p1@MEIS3!0.56!4.79!MEIS3;;chr5:72743793..72743855,-!p4@FOXD1!0.56!3.19!FOXD1;;chr15:96869222..96869251,+!p18@NR2F2!0.56!3.19!NR2F2;;chr16:86612320..86612394,+!p1@FOXL1!0.56!2.66!FOXL1;;chr17:46667628..46667642,-!p2@HOXB3!0.56!2.66!HOXB3;;chr17:46671108..46671147,-!p1@HOXB5!0.56!2.66!HOXB5;;chr19:13135386..13135435,+!p4@NFIX!0.56!2.66!NFIX;;chr11:32457075..32457095,-!p1@WT1!0.56!2.66!WT1;;chr12:54393880..54393962,+!p1@HOXC9!0.56!2.66!HOXC9;;chr12:66218923..66218934,+!p14@HMGA2!0.56!2.66!HMGA2;;chr12:66358080..66358094,+!p15@HMGA2!0.56!2.66!HMGA2;;chr9:35732647..35732678,+!p2@CREB3!0.55!17.28!CREB3;;chr16:54320675..54320715,-!p1@IRX3!0.55!6.38!IRX3;;chr15:96876966..96877017,+!p12@NR2F2!0.55!3.99!NR2F2;;chr7:150945754..150945789,-!p2@SMARCD3!0.54!9.04!SMARCD3;;chr5:137804130..137804156,+!p5@EGR1!0.54!2.66!EGR1;;chr3:5021026..5021035,+!p5@BHLHE40!0.53!3.19!BHLHE40;;chr4:81105027..81105039,+!p3@PRDM8!0.53!2.92!PRDM8;;chr17:46622229..46622257,-!p6@HOXB2!0.53!2.92!HOXB2;;chr15:96869165..96869183,+!p20@NR2F2!0.53!2.39!NR2F2;;chr17:46132044..46132080,+!p4@NFE2L1!0.53!2.39!NFE2L1;;chr17:46691732..46691766,-!p4@HOXB8!0.53!2.39!HOXB8;;chr3:25469815..25469866,+!p3@RARB!0.53!2.39!RARB;;chr3:25470156..25470227,+!p2@RARB!0.53!2.39!RARB;;chr7:27183114..27183138,-!p3@HOXA5!0.53!2.39!HOXA5;;chr8:72755987..72756002,-!p7@MSC!0.53!2.39!MSC;;chr8:93074848..93074871,-!p3@RUNX1T1!0.53!2.39!RUNX1T1;;chr10:131762504..131762555,-!p1@EBF3!0.53!2.39!EBF3;;chr11:125034640..125034655,+!p1@PKNOX2!0.53!2.39!PKNOX2;;chr12:66218420..66218439,+!p12@HMGA2!0.53!2.39!HMGA2;;chr3:178789522..178789564,-!p2@ZMAT3!0.52!21.53!ZMAT3;;chr22:38597987..38598021,+!p2@MAFF!0.52!18.08!MAFF;;chr8:72756213..72756243,-!p5@MSC!0.52!3.19!MSC;;chr2:19558373..19558392,-!p1@OSR1!0.51!7.44!OSR1;;chr3:71630690..71630750,-!p11@FOXP1!0.51!4.25!FOXP1;;chr17:20492136..20492165,+!p1@MEIS3P2!0.51!3.99!MEIS3P2;;chr12:66218573..66218596,+!p7@HMGA2!0.51!3.72!HMGA2;;chr7:137563905..137563916,-!p11@CREB3L2!0.51!3.46!CREB3L2;;chr5:92919100..92919135,+!p3@NR2F1!0.51!2.92!NR2F1;;chr22:38598086..38598105,+!p1@MAFF!0.50!30.04!MAFF;;chr7:77428149..77428220,+!p1@PHTF2!0.50!28.98!PHTF2;;chr1:158979792..158979814,+!p2@IFI16!0.50!26.85!IFI16;;chr12:26277956..26277980,-!p1@BHLHE41!0.50!9.84!BHLHE41;;chr21:36259445..36259519,-!p4@RUNX1!0.50!7.44!RUNX1;;chr5:139487608..139487663,+!p3@PURA!0.50!5.58!PURA;;chr1:151032782..151032801,+!p4@MLLT11!0.50!5.05!MLLT11;;chr3:25469724..25469773,+!p1@RARB!0.50!3.46!RARB;;chr1:8926369..8926385,-!p12@ENO1!0.50!3.19!ENO1;;chr17:46622205..46622218,-!p3@HOXB2!0.50!2.66!HOXB2;;chr15:96869206..96869220,+!p21@NR2F2!0.50!2.13!NR2F2;;chr17:46655672..46655697,-!p3@HOXB4!0.50!2.13!HOXB4;;chr17:46703212..46703238,-!p2@HOXB9!0.50!2.13!HOXB9;;chr19:52076425..52076440,+!p2@ZNF175!0.50!2.13!ZNF175;;chr2:176994408..176994492,+!p1@HOXD8!0.50!2.13!HOXD8;;chr8:72756380..72756427,-!p8@MSC!0.50!2.13!MSC;;chr8:93074803..93074845,-!p1@RUNX1T1!0.50!2.13!RUNX1T1;;chr11:46299443..46299459,+!p4@CREB3L1!0.50!2.13!CREB3L1;;chr12:54394059..54394088,+!p3@HOXC9!0.50!2.13!HOXC9;;chr12:54402745..54402788,+!p1@HOXC8!0.50!2.13!HOXC8;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.50!2.13!HOXC5;;chr12:54422217..54422239,+!p3@HOXC6!0.50!2.13!HOXC6;;chr9:96717663..96717666,-!p4@BARX1!0.50!2.13!BARX1;;chr17:46126136..46126152,+!p1@NFE2L1!0.49!144.09!NFE2L1;;chr17:1958388..1958404,+!p1@HIC1!0.49!17.55!HIC1;;chr1:59249688..59249703,-!p3@JUN!0.49!16.22!JUN;;chr2:666622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@@ Line 41: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520metastasis%252c%2520donor1.CNhs12374.11758-123H3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520metastasis%252c%2520donor1.CNhs12374.11758-123H3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520metastasis%252c%2520donor1.CNhs12374.11758-123H3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520metastasis%252c%2520donor1.CNhs12374.11758-123H3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520metastasis%252c%2520donor1.CNhs12374.11758-123H3.hg38.nobarcode.ctss.bed.gz
 |id=FF:11758-123H3
 |is_a=EFO:0002091;;FF:0000274
 |is_obsolete=
 |library_id=CNhs12374
-|library_id_phase_based=1:CNhs12374
+|library_id_phase_based=2:CNhs12374
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11758
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11758
 |name=mesenchymal precursor cell - ovarian cancer metastasis, donor1
 |namespace=FANTOM5
@@ Line 51: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12374,LSID914,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11758-123H3;search_select_hide=table117:FF:11758-123H3
 }}

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Latest revision as of 18:18, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0