FF:13433-144E4: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@ | |DRA_sample_Accession=CAGE@SAMD00005143 | ||
|accession_numbers=CAGE;DRX008604;DRR009476;DRZ000901;DRZ002286 | |accession_numbers=CAGE;DRX008604;DRR009476;DRZ000901;DRZ002286;DRZ012251;DRZ013636 | ||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000540,CL:0000003,CL:0000548,CL:0002371,CL:0002319,CL:0000393,CL:0000211,CL:0000404,CL:0000255 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000540,CL:0000003,CL:0000548,CL:0002371,CL:0002319,CL:0000393,CL:0000211,CL:0000404,CL:0000255 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase= | |data_phase=2 | ||
|datafreeze_phase= | |datafreeze_phase=2 | ||
|def= | |def= | ||
|donor= rep1 | |||
|expression_enrichment_score=chr20:31350184..31350200,+!p1@DNMT3B!2.76!1166.33!DNMT3B;;chr8:73921136..73921151,+!p2@TERF1!2.28!276.59!TERF1;;chr3:181429704..181429722,+!p1@SOX2!2.15!139.88!SOX2;;chr4:188916918..188916942,+!p1@ZFP42!2.10!124.34!ZFP42;;chr8:128428066..128428078,+!p1@POU5F1B!2.07!117.73!POU5F1B;;chr8:145701192..145701241,-!p1@FOXH1!2.01!100.27!FOXH1;;chr6:31138439..31138475,-!p1@POU5F1!2.00!99.58!POU5F1;;chr14:57272369..57272391,-!p2@OTX2!1.81!64.09!OTX2;;chr16:3149278..3149305,-!p1@ZSCAN10!1.80!61.89!ZSCAN10;;chr8:70983476..70983493,-!p1@PRDM14!1.78!59.55!PRDM14;;chr1:164528687..164528711,+!p6@PBX1!1.77!67.26!PBX1;;chr13:100623375..100623425,-!p1@ZIC5!1.72!51.71!ZIC5;;chr9:114287433..114287513,+!p1@ZNF483!1.69!120.07!ZNF483;;chr3:57234000..57234014,-!p1@HESX1!1.68!47.04!HESX1;;chr1:6304233..6304243,+!p1@HES3!1.68!46.76!HES3;;chrX:136648279..136648295,+!p1@ZIC3!1.64!43.05!ZIC3;;chr12:7941989..7942014,+!p1@NANOG!1.64!42.77!NANOG;;chrX:139587228..139587234,-!p1@SOX3!1.57!35.90!SOX3;;chr14:22005197..22005261,-!p3@SALL2!1.56!35.35!SALL2;;chr20:50418972..50419029,-!p1@SALL4!1.56!35.07!SALL4;;chr2:16080659..16080685,+!p1@MYCN!1.54!33.83!MYCN;;chr3:170076314..170076334,+!p2@SKIL!1.50!40.02!SKIL;;chr13:100634031..100634045,+!p1@ZIC2!1.48!29.30!ZIC2;;chr2:5832508..5832524,+!p1@SOX11!1.48!29.02!SOX11;;chr17:7493405..7493419,-!p1@SOX15!1.46!27.78!SOX15;;chr1:63788229..63788250,+!p1@FOXD3!1.44!26.27!FOXD3;;chr2:16081912..16081931,+!p2@MYCN!1.43!25.72!MYCN;;chr11:63684602..63684664,-!p1@RCOR2!1.42!49.24!RCOR2;;chr20:50419055..50419066,-!p3@SALL4!1.42!25.31!SALL4;;chr4:299227..299272,-!p1@ZNF732!1.40!24.34!ZNF732;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.37!22.42!ZBED1;;chr10:70320074..70320106,+!p1@TET1!1.36!43.05!TET1;;chr2:25475094..25475112,-!p3@DNMT3A!1.34!20.77!DNMT3A;;chr9:77112244..77112262,+!p1@RORB!1.33!22.83!RORB;;chr3:181429741..181429767,+!p2@SOX2!1.32!20.08!SOX2;;chr2:25475120..25475176,-!p2@DNMT3A!1.31!25.99!DNMT3A;;chr17:47892398..47892407,+!p2@KAT7!1.31!19.53!KAT7;;chr18:56530136..56530199,+!p3@ZNF532!1.30!28.20!ZNF532;;chr3:71355163..71355209,-!p5@FOXP1!1.30!25.99!FOXP1;;chr7:26191809..26191890,+!p1@NFE2L3!1.29!89.40!NFE2L3;;chr6:15246200..15246214,+!p2@JARID2!1.29!49.93!JARID2;;chr8:102504651..102504683,+!p1@GRHL2!1.28!18.16!GRHL2;;chr19:20188776..20188826,+!p1@ZNF90!1.27!46.76!ZNF90;;chr9:127533519..127533573,-!p2@NR6A1!1.26!20.49!NR6A1;;chr13:100638100..100638115,+!p4@ZIC2!1.26!17.05!ZIC2;;chr12:7942020..7942031,+!p2@NANOG!1.25!16.64!NANOG;;chr15:57511609..57511651,+!p2@TCF12!1.22!26.13!TCF12;;chr3:48282587..48282603,+!p1@ZNF589!1.21!66.84!ZNF589;;chr8:40755333..40755352,-!p1@ZMAT4!1.21!15.27!ZMAT4;;chr19:12163769..12163798,-!p1@ZNF878!1.20!19.12!ZNF878;;chr19:20011775..20011800,+!p2@ZNF93!1.18!25.44!ZNF93;;chr19:23299814..23299844,+!p1@ZNF730!1.18!17.19!ZNF730;;chr17:41623692..41623715,-!p1@ETV4!1.17!57.90!ETV4;;chr8:73921067..73921078,+!p3@TERF1!1.17!21.87!TERF1;;chr10:48355030..48355090,+!p1@ZNF488!1.16!17.47!ZNF488;;chr10:126138597..126138612,-!p1@NKX1-2!1.16!13.62!NKX1-2;;chr14:69263043..69263069,-!p8@ZFP36L1!1.16!13.62!ZFP36L1;;chr8:145701166..145701187,-!p2@FOXH1!1.16!13.62!FOXH1;;chr8:70983506..70983522,-!p3@PRDM14!1.16!13.48!PRDM14;;chr19:9609272..9609297,-!p1@ZNF560!1.15!13.20!ZNF560;;chr19:46800289..46800327,+!p2@HIF3A!1.15!13.07!HIF3A;;chr20:50418128..50418147,-!p2@SALL4!1.15!13.07!SALL4;;chr14:21994337..21994442,-!p1@SALL2!1.14!35.35!SALL2;;chr17:41622765..41622821,-!p2@ETV4!1.14!19.67!ETV4;;chr1:201979703..201979721,+!p2@ELF3!1.14!12.65!ELF3;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!1.13!26.96!SOHLH2;;chr11:128457446..128457461,-!p4@ETS1!1.13!12.38!ETS1;;chr13:100634004..100634025,+!p2@ZIC2!1.13!12.38!ZIC2;;chr2:60780753..60780800,-!p1@BCL11A!1.12!59.97!BCL11A;;chr19:23433144..23433204,-!p1@ZNF724P!1.12!54.33!ZNF724P;;chrX:136648297..136648319,+!p3@ZIC3!1.12!12.24!ZIC3;;chr2:16082155..16082169,+!p3@MYCN!1.11!11.97!MYCN;;chr8:70983443..70983460,-!p2@PRDM14!1.11!11.97!PRDM14;;chr12:3068544..3068597,+!p1@TEAD4!1.09!67.81!TEAD4;;chr2:60780607..60780624,-!p2@BCL11A!1.09!34.52!BCL11A;;chr19:50922187..50922204,+!p1@SPIB!1.09!11.28!SPIB;;chr20:31368212..31368235,+!p2@DNMT3B!1.09!11.28!DNMT3B;;chr14:22005018..22005040,-!p6@SALL2!1.09!11.28!SALL2;;chr18:56531584..56531646,+!p4@ZNF532!1.08!14.72!ZNF532;;chr6:34204672..34204692,+!p1@HMGA1!1.05!1151.34!HMGA1;;chr19:23299851..23299880,+!p2@ZNF730!1.05!10.32!ZNF730;;chr19:20959098..20959117,+!p1@ZNF66P!1.04!41.67!ZNF66P;;chrX:136648643..136648711,+!p2@ZIC3!1.04!9.90!ZIC3;;chr14:21994449..21994524,-!p2@SALL2!1.03!29.71!SALL2;;chr19:12203100..12203132,+!p1@ZNF788!1.03!19.94!ZNF788;;chr15:74833584..74833626,+!p1@ARID3B!1.02!22.28!ARID3B;;chr5:124084493..124084524,-!p2@ZNF608!1.02!21.59!ZNF608;;chr14:22005343..22005364,-!p5@SALL2!1.02!9.35!SALL2;;chr7:64254834..64254854,+!p2@ZNF138!1.01!16.92!ZNF138;;chr19:58341656..58341694,+!p5@ZNF587!1.01!11.14!ZNF587;;chr19:46367576..46367592,+!p1@FOXA3!1.01!9.22!FOXA3;;chr6:21597765..21597779,+!p2@SOX4!1.00!73.72!SOX4;;chr2:85360499..85360598,+!p1@TCF7L1!1.00!51.99!TCF7L1;;chr6:126070769..126070801,+!p1@HEY2!1.00!10.45!HEY2;;chr16:30406423..30406447,+!p4@ZNF48!1.00!9.08!ZNF48;;chr16:29818199..29818216,+!p11@MAZ!0.99!14.58!MAZ;;chr7:14028743..14028799,-!p3@ETV1!0.99!11.14!ETV1;;chr2:5832493..5832507,+!p2@SOX11!0.99!8.66!SOX11;;chr19:47523058..47523114,+!p1@NPAS1!0.99!8.66!NPAS1;;chr20:35202909..35202963,+!p2@TGIF2,p3@C20orf24!0.98!12.52!TGIF2;;chr12:66218836..66218888,+!p1@HMGA2!0.97!80.60!HMGA2;;chr19:925727..925784,+!p3@ARID3A!0.97!18.29!ARID3A;;chr11:6947720..6947812,+!p1@ZNF215!0.97!11.00!ZNF215;;chr15:85144307..85144329,+!p2@ZSCAN2!0.97!9.49!ZSCAN2;;chr19:20011744..20011770,+!p1@ZNF93!0.95!31.36!ZNF93;;chr19:19976714..19976729,+!p3@ZNF253!0.95!15.27!ZNF253;;chr17:46132044..46132080,+!p4@NFE2L1!0.95!7.98!NFE2L1;;chr1:201979743..201979762,+!p1@ELF3!0.95!7.84!ELF3;;chr2:88752207..88752218,-!p1@FOXI3!0.95!7.84!FOXI3;;chr6:20402102..20402152,+!p1@E2F3!0.93!32.18!E2F3;;chr6:21593973..21593988,+!p1@SOX4!0.92!271.50!SOX4;;chr4:26322267..26322334,+!p3@RBPJ!0.92!18.29!RBPJ;;chr13:41240737..41240787,-!p1@FOXO1!0.91!88.85!FOXO1;;chr3:48282536..48282586,+!p2@ZNF589!0.91!20.08!ZNF589;;chr19:21265028..21265052,+!p2@ZNF714!0.91!13.07!ZNF714;;chr19:21264991..21265026,+!p1@ZNF714!0.90!48.14!ZNF714;;chr12:66218183..66218209,+!p4@HMGA2!0.90!13.62!HMGA2;;chr19:58400344..58400364,-!p2@ZNF814!0.90!10.18!ZNF814;;chr12:7079780..7079791,-!p2@PHB2!0.88!36.17!PHB2;;chr9:86594530..86594564,-!p@chr9:86594530..86594564,-!0.88!26.55!HNRPK;;chr6:15246217..15246228,+!p3@JARID2!0.88!12.10!JARID2;;chr12:66218378..66218401,+!p6@HMGA2!0.88!10.59!HMGA2;;chr3:33482052..33482116,-!p2@UBP1!0.88!10.32!UBP1;;chr10:135043702..135043729,+!p1@UTF1!0.88!6.60!UTF1;;chr12:7941942..7941949,+!p3@NANOG!0.88!6.60!NANOG;;chr13:100623360..100623373,-!p2@ZIC5!0.88!6.60!ZIC5;;chr6:15246261..15246312,+!p1@JARID2!0.87!165.32!JARID2;;chr2:42795745..42795824,+!p1@MTA3!0.87!62.99!MTA3;;chr19:22034809..22034878,-!p2@ZNF43!0.87!23.52!ZNF43;;chr19:24097706..24097731,+!p2@ZNF726!0.87!12.79!ZNF726;;chr1:38512457..38512474,-!p1@POU3F1!0.87!7.15!POU3F1;;chr20:42295713..42295738,+!p2@MYBL2!0.86!38.65!MYBL2;;chr19:54024313..54024361,+!p7@ZNF331!0.86!6.33!ZNF331;;chr1:247171316..247171336,-!p3@ZNF695!0.85!9.22!ZNF695;;chr2:166326200..166326216,+!p1@CSRNP3!0.85!9.22!CSRNP3;;chr6:21597514..21597578,+!p4@SOX4!0.84!10.32!SOX4;;chr3:32023232..32023273,+!p1@ZNF860!0.84!8.66!ZNF860;;chr3:141747441..141747452,-!p4@TFDP2!0.84!8.39!TFDP2;;chr5:138609782..138609826,+!p5@MATR3!0.83!40.44!MATR3;;chr7:64363638..64363667,+!p1@ZNF273!0.83!30.95!ZNF273;;chr7:64126535..64126559,+!p2@ZNF107!0.83!12.79!ZNF107;;chr1:247171347..247171366,-!p2@ZNF695!0.83!11.00!ZNF695;;chr17:41622925..41622976,-!p3@ETV4!0.83!8.80!ETV4;;chr14:90085820..90085840,-!p6@FOXN3!0.83!5.78!FOXN3;;chr19:9695169..9695188,-!p1@ZNF121!0.82!107.14!ZNF121;;chr10:114710098..114710130,+!p2@TCF7L2!0.82!45.39!TCF7L2;;chr19:58400372..58400411,-!p1@ZNF814!0.82!31.50!ZNF814;;chr6:21597600..21597664,+!p3@SOX4!0.82!9.63!SOX4;;chr9:127533582..127533615,-!p1@NR6A1!0.82!8.66!NR6A1;;chr1:204042233..204042249,+!p1@SOX13!0.81!37.14!SOX13;;chr19:19976683..19976709,+!p1@ZNF253!0.81!25.58!ZNF253;;chr8:86089627..86089653,+!p3@E2F5!0.81!6.19!E2F5;;chr9:77112225..77112238,+!p2@RORB!0.81!5.50!RORB;;chr16:29818160..29818188,+!p6@MAZ!0.80!27.10!MAZ;;chr10:114710218..114710229,+!p4@TCF7L2!0.80!11.00!TCF7L2;;chr19:20150268..20150298,-!p2@ZNF682!0.80!10.45!ZNF682;;chrX:84499081..84499115,+!p2@ZNF711!0.80!8.11!ZNF711;;chr1:209979467..209979494,-!p1@IRF6!0.80!6.05!IRF6;;chr14:22005062..22005082,-!p7@SALL2!0.80!5.36!SALL2;;chr7:64838786..64838809,+!p2@ZNF92!0.79!31.91!ZNF92;;chr17:41622731..41622764,-!p5@ETV4!0.79!5.23!ETV4;;chr2:16080635..16080650,+!p4@MYCN!0.79!5.23!MYCN;;chr3:141747459..141747475,-!p1@TFDP2!0.78!46.08!TFDP2;;chr2:239148671..239148686,-!p1@HES6!0.78!19.81!HES6;;chr17:41623009..41623053,-!p4@ETV4!0.78!8.53!ETV4;;chr18:53254566..53254567,-!p8@TCF4!0.78!8.53!TCF4;;chr17:7197911..7197964,-!p1@YBX2!0.78!5.09!YBX2;;chr20:42295745..42295765,+!p1@MYBL2!0.77!88.71!MYBL2;;chr12:66358080..66358094,+!p15@HMGA2!0.77!4.95!HMGA2;;chr12:19592405..19592492,+!p2@AEBP2!0.76!44.43!AEBP2;;chr19:52408227..52408243,-!p2@ZNF649!0.76!11.42!ZNF649;;chr19:48774586..48774670,+!p1@ZNF114!0.76!6.05!ZNF114;;chr3:170076223..170076242,+!p6@SKIL!0.76!5.50!SKIL;;chr1:202777535..202777556,-!p1@KDM5B!0.75!172.47!KDM5B;;chr19:19779619..19779670,+!p1@ZNF101!0.75!14.17!ZNF101;;chr12:3068501..3068515,+!p4@TEAD4!0.75!8.39!TEAD4;;chr1:151032922..151032951,+!p2@MLLT11!0.75!8.11!MLLT11;;chr1:91487013..91487070,-!p6@ZNF644!0.75!6.74!ZNF644;;chr19:49864746..49864780,-!p2@TEAD2!0.75!6.60!TEAD2;;chr8:102504690..102504704,+!p3@GRHL2!0.75!4.68!GRHL2;;chr13:41240717..41240735,-!p2@FOXO1!0.74!33.97!FOXO1;;chr19:53758058..53758088,-!p2@ZNF677!0.74!16.37!ZNF677;;chr19:53868940..53868990,+!p1@ZNF525,p2@ZNF765!0.74!13.89!ZNF525;;chr2:121493425..121493474,+!p1@GLI2!0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| |expression_enrichment_score=chr20:31350184..31350200,+!p1@DNMT3B!2.76!1166.33!DNMT3B;;chr8:73921136..73921151,+!p2@TERF1!2.28!276.59!TERF1;;chr3:181429704..181429722,+!p1@SOX2!2.15!139.88!SOX2;;chr4:188916918..188916942,+!p1@ZFP42!2.10!124.34!ZFP42;;chr8:128428066..128428078,+!p1@POU5F1B!2.07!117.73!POU5F1B;;chr8:145701192..145701241,-!p1@FOXH1!2.01!100.27!FOXH1;;chr6:31138439..31138475,-!p1@POU5F1!2.00!99.58!POU5F1;;chr14:57272369..57272391,-!p2@OTX2!1.81!64.09!OTX2;;chr16:3149278..3149305,-!p1@ZSCAN10!1.80!61.89!ZSCAN10;;chr8:70983476..70983493,-!p1@PRDM14!1.78!59.55!PRDM14;;chr1:164528687..164528711,+!p6@PBX1!1.77!67.26!PBX1;;chr13:100623375..100623425,-!p1@ZIC5!1.72!51.71!ZIC5;;chr9:114287433..114287513,+!p1@ZNF483!1.69!120.07!ZNF483;;chr3:57234000..57234014,-!p1@HESX1!1.68!47.04!HESX1;;chr1:6304233..6304243,+!p1@HES3!1.68!46.76!HES3;;chrX:136648279..136648295,+!p1@ZIC3!1.64!43.05!ZIC3;;chr12:7941989..7942014,+!p1@NANOG!1.64!42.77!NANOG;;chrX:139587228..139587234,-!p1@SOX3!1.57!35.90!SOX3;;chr14:22005197..22005261,-!p3@SALL2!1.56!35.35!SALL2;;chr20:50418972..50419029,-!p1@SALL4!1.56!35.07!SALL4;;chr2:16080659..16080685,+!p1@MYCN!1.54!33.83!MYCN;;chr3:170076314..170076334,+!p2@SKIL!1.50!40.02!SKIL;;chr13:100634031..100634045,+!p1@ZIC2!1.48!29.30!ZIC2;;chr2:5832508..5832524,+!p1@SOX11!1.48!29.02!SOX11;;chr17:7493405..7493419,-!p1@SOX15!1.46!27.78!SOX15;;chr1:63788229..63788250,+!p1@FOXD3!1.44!26.27!FOXD3;;chr2:16081912..16081931,+!p2@MYCN!1.43!25.72!MYCN;;chr11:63684602..63684664,-!p1@RCOR2!1.42!49.24!RCOR2;;chr20:50419055..50419066,-!p3@SALL4!1.42!25.31!SALL4;;chr4:299227..299272,-!p1@ZNF732!1.40!24.34!ZNF732;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.37!22.42!ZBED1;;chr10:70320074..70320106,+!p1@TET1!1.36!43.05!TET1;;chr2:25475094..25475112,-!p3@DNMT3A!1.34!20.77!DNMT3A;;chr9:77112244..77112262,+!p1@RORB!1.33!22.83!RORB;;chr3:181429741..181429767,+!p2@SOX2!1.32!20.08!SOX2;;chr2:25475120..25475176,-!p2@DNMT3A!1.31!25.99!DNMT3A;;chr17:47892398..47892407,+!p2@KAT7!1.31!19.53!KAT7;;chr18:56530136..56530199,+!p3@ZNF532!1.30!28.20!ZNF532;;chr3:71355163..71355209,-!p5@FOXP1!1.30!25.99!FOXP1;;chr7:26191809..26191890,+!p1@NFE2L3!1.29!89.40!NFE2L3;;chr6:15246200..15246214,+!p2@JARID2!1.29!49.93!JARID2;;chr8:102504651..102504683,+!p1@GRHL2!1.28!18.16!GRHL2;;chr19:20188776..20188826,+!p1@ZNF90!1.27!46.76!ZNF90;;chr9:127533519..127533573,-!p2@NR6A1!1.26!20.49!NR6A1;;chr13:100638100..100638115,+!p4@ZIC2!1.26!17.05!ZIC2;;chr12:7942020..7942031,+!p2@NANOG!1.25!16.64!NANOG;;chr15:57511609..57511651,+!p2@TCF12!1.22!26.13!TCF12;;chr3:48282587..48282603,+!p1@ZNF589!1.21!66.84!ZNF589;;chr8:40755333..40755352,-!p1@ZMAT4!1.21!15.27!ZMAT4;;chr19:12163769..12163798,-!p1@ZNF878!1.20!19.12!ZNF878;;chr19:20011775..20011800,+!p2@ZNF93!1.18!25.44!ZNF93;;chr19:23299814..23299844,+!p1@ZNF730!1.18!17.19!ZNF730;;chr17:41623692..41623715,-!p1@ETV4!1.17!57.90!ETV4;;chr8:73921067..73921078,+!p3@TERF1!1.17!21.87!TERF1;;chr10:48355030..48355090,+!p1@ZNF488!1.16!17.47!ZNF488;;chr10:126138597..126138612,-!p1@NKX1-2!1.16!13.62!NKX1-2;;chr14:69263043..69263069,-!p8@ZFP36L1!1.16!13.62!ZFP36L1;;chr8:145701166..145701187,-!p2@FOXH1!1.16!13.62!FOXH1;;chr8:70983506..70983522,-!p3@PRDM14!1.16!13.48!PRDM14;;chr19:9609272..9609297,-!p1@ZNF560!1.15!13.20!ZNF560;;chr19:46800289..46800327,+!p2@HIF3A!1.15!13.07!HIF3A;;chr20:50418128..50418147,-!p2@SALL4!1.15!13.07!SALL4;;chr14:21994337..21994442,-!p1@SALL2!1.14!35.35!SALL2;;chr17:41622765..41622821,-!p2@ETV4!1.14!19.67!ETV4;;chr1:201979703..201979721,+!p2@ELF3!1.14!12.65!ELF3;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!1.13!26.96!SOHLH2;;chr11:128457446..128457461,-!p4@ETS1!1.13!12.38!ETS1;;chr13:100634004..100634025,+!p2@ZIC2!1.13!12.38!ZIC2;;chr2:60780753..60780800,-!p1@BCL11A!1.12!59.97!BCL11A;;chr19:23433144..23433204,-!p1@ZNF724P!1.12!54.33!ZNF724P;;chrX:136648297..136648319,+!p3@ZIC3!1.12!12.24!ZIC3;;chr2:16082155..16082169,+!p3@MYCN!1.11!11.97!MYCN;;chr8:70983443..70983460,-!p2@PRDM14!1.11!11.97!PRDM14;;chr12:3068544..3068597,+!p1@TEAD4!1.09!67.81!TEAD4;;chr2:60780607..60780624,-!p2@BCL11A!1.09!34.52!BCL11A;;chr19:50922187..50922204,+!p1@SPIB!1.09!11.28!SPIB;;chr20:31368212..31368235,+!p2@DNMT3B!1.09!11.28!DNMT3B;;chr14:22005018..22005040,-!p6@SALL2!1.09!11.28!SALL2;;chr18:56531584..56531646,+!p4@ZNF532!1.08!14.72!ZNF532;;chr6:34204672..34204692,+!p1@HMGA1!1.05!1151.34!HMGA1;;chr19:23299851..23299880,+!p2@ZNF730!1.05!10.32!ZNF730;;chr19:20959098..20959117,+!p1@ZNF66P!1.04!41.67!ZNF66P;;chrX:136648643..136648711,+!p2@ZIC3!1.04!9.90!ZIC3;;chr14:21994449..21994524,-!p2@SALL2!1.03!29.71!SALL2;;chr19:12203100..12203132,+!p1@ZNF788!1.03!19.94!ZNF788;;chr15:74833584..74833626,+!p1@ARID3B!1.02!22.28!ARID3B;;chr5:124084493..124084524,-!p2@ZNF608!1.02!21.59!ZNF608;;chr14:22005343..22005364,-!p5@SALL2!1.02!9.35!SALL2;;chr7:64254834..64254854,+!p2@ZNF138!1.01!16.92!ZNF138;;chr19:58341656..58341694,+!p5@ZNF587!1.01!11.14!ZNF587;;chr19:46367576..46367592,+!p1@FOXA3!1.01!9.22!FOXA3;;chr6:21597765..21597779,+!p2@SOX4!1.00!73.72!SOX4;;chr2:85360499..85360598,+!p1@TCF7L1!1.00!51.99!TCF7L1;;chr6:126070769..126070801,+!p1@HEY2!1.00!10.45!HEY2;;chr16:30406423..30406447,+!p4@ZNF48!1.00!9.08!ZNF48;;chr16:29818199..29818216,+!p11@MAZ!0.99!14.58!MAZ;;chr7:14028743..14028799,-!p3@ETV1!0.99!11.14!ETV1;;chr2:5832493..5832507,+!p2@SOX11!0.99!8.66!SOX11;;chr19:47523058..47523114,+!p1@NPAS1!0.99!8.66!NPAS1;;chr20:35202909..35202963,+!p2@TGIF2,p3@C20orf24!0.98!12.52!TGIF2;;chr12:66218836..66218888,+!p1@HMGA2!0.97!80.60!HMGA2;;chr19:925727..925784,+!p3@ARID3A!0.97!18.29!ARID3A;;chr11:6947720..6947812,+!p1@ZNF215!0.97!11.00!ZNF215;;chr15:85144307..85144329,+!p2@ZSCAN2!0.97!9.49!ZSCAN2;;chr19:20011744..20011770,+!p1@ZNF93!0.95!31.36!ZNF93;;chr19:19976714..19976729,+!p3@ZNF253!0.95!15.27!ZNF253;;chr17:46132044..46132080,+!p4@NFE2L1!0.95!7.98!NFE2L1;;chr1:201979743..201979762,+!p1@ELF3!0.95!7.84!ELF3;;chr2:88752207..88752218,-!p1@FOXI3!0.95!7.84!FOXI3;;chr6:20402102..20402152,+!p1@E2F3!0.93!32.18!E2F3;;chr6:21593973..21593988,+!p1@SOX4!0.92!271.50!SOX4;;chr4:26322267..26322334,+!p3@RBPJ!0.92!18.29!RBPJ;;chr13:41240737..41240787,-!p1@FOXO1!0.91!88.85!FOXO1;;chr3:48282536..48282586,+!p2@ZNF589!0.91!20.08!ZNF589;;chr19:21265028..21265052,+!p2@ZNF714!0.91!13.07!ZNF714;;chr19:21264991..21265026,+!p1@ZNF714!0.90!48.14!ZNF714;;chr12:66218183..66218209,+!p4@HMGA2!0.90!13.62!HMGA2;;chr19:58400344..58400364,-!p2@ZNF814!0.90!10.18!ZNF814;;chr12:7079780..7079791,-!p2@PHB2!0.88!36.17!PHB2;;chr9:86594530..86594564,-!p@chr9:86594530..86594564,-!0.88!26.55!HNRPK;;chr6:15246217..15246228,+!p3@JARID2!0.88!12.10!JARID2;;chr12:66218378..66218401,+!p6@HMGA2!0.88!10.59!HMGA2;;chr3:33482052..33482116,-!p2@UBP1!0.88!10.32!UBP1;;chr10:135043702..135043729,+!p1@UTF1!0.88!6.60!UTF1;;chr12:7941942..7941949,+!p3@NANOG!0.88!6.60!NANOG;;chr13:100623360..100623373,-!p2@ZIC5!0.88!6.60!ZIC5;;chr6:15246261..15246312,+!p1@JARID2!0.87!165.32!JARID2;;chr2:42795745..42795824,+!p1@MTA3!0.87!62.99!MTA3;;chr19:22034809..22034878,-!p2@ZNF43!0.87!23.52!ZNF43;;chr19:24097706..24097731,+!p2@ZNF726!0.87!12.79!ZNF726;;chr1:38512457..38512474,-!p1@POU3F1!0.87!7.15!POU3F1;;chr20:42295713..42295738,+!p2@MYBL2!0.86!38.65!MYBL2;;chr19:54024313..54024361,+!p7@ZNF331!0.86!6.33!ZNF331;;chr1:247171316..247171336,-!p3@ZNF695!0.85!9.22!ZNF695;;chr2:166326200..166326216,+!p1@CSRNP3!0.85!9.22!CSRNP3;;chr6:21597514..21597578,+!p4@SOX4!0.84!10.32!SOX4;;chr3:32023232..32023273,+!p1@ZNF860!0.84!8.66!ZNF860;;chr3:141747441..141747452,-!p4@TFDP2!0.84!8.39!TFDP2;;chr5:138609782..138609826,+!p5@MATR3!0.83!40.44!MATR3;;chr7:64363638..64363667,+!p1@ZNF273!0.83!30.95!ZNF273;;chr7:64126535..64126559,+!p2@ZNF107!0.83!12.79!ZNF107;;chr1:247171347..247171366,-!p2@ZNF695!0.83!11.00!ZNF695;;chr17:41622925..41622976,-!p3@ETV4!0.83!8.80!ETV4;;chr14:90085820..90085840,-!p6@FOXN3!0.83!5.78!FOXN3;;chr19:9695169..9695188,-!p1@ZNF121!0.82!107.14!ZNF121;;chr10:114710098..114710130,+!p2@TCF7L2!0.82!45.39!TCF7L2;;chr19:58400372..58400411,-!p1@ZNF814!0.82!31.50!ZNF814;;chr6:21597600..21597664,+!p3@SOX4!0.82!9.63!SOX4;;chr9:127533582..127533615,-!p1@NR6A1!0.82!8.66!NR6A1;;chr1:204042233..204042249,+!p1@SOX13!0.81!37.14!SOX13;;chr19:19976683..19976709,+!p1@ZNF253!0.81!25.58!ZNF253;;chr8:86089627..86089653,+!p3@E2F5!0.81!6.19!E2F5;;chr9:77112225..77112238,+!p2@RORB!0.81!5.50!RORB;;chr16:29818160..29818188,+!p6@MAZ!0.80!27.10!MAZ;;chr10:114710218..114710229,+!p4@TCF7L2!0.80!11.00!TCF7L2;;chr19:20150268..20150298,-!p2@ZNF682!0.80!10.45!ZNF682;;chrX:84499081..84499115,+!p2@ZNF711!0.80!8.11!ZNF711;;chr1:209979467..209979494,-!p1@IRF6!0.80!6.05!IRF6;;chr14:22005062..22005082,-!p7@SALL2!0.80!5.36!SALL2;;chr7:64838786..64838809,+!p2@ZNF92!0.79!31.91!ZNF92;;chr17:41622731..41622764,-!p5@ETV4!0.79!5.23!ETV4;;chr2:16080635..16080650,+!p4@MYCN!0.79!5.23!MYCN;;chr3:141747459..141747475,-!p1@TFDP2!0.78!46.08!TFDP2;;chr2:239148671..239148686,-!p1@HES6!0.78!19.81!HES6;;chr17:41623009..41623053,-!p4@ETV4!0.78!8.53!ETV4;;chr18:53254566..53254567,-!p8@TCF4!0.78!8.53!TCF4;;chr17:7197911..7197964,-!p1@YBX2!0.78!5.09!YBX2;;chr20:42295745..42295765,+!p1@MYBL2!0.77!88.71!MYBL2;;chr12:66358080..66358094,+!p15@HMGA2!0.77!4.95!HMGA2;;chr12:19592405..19592492,+!p2@AEBP2!0.76!44.43!AEBP2;;chr19:52408227..52408243,-!p2@ZNF649!0.76!11.42!ZNF649;;chr19:48774586..48774670,+!p1@ZNF114!0.76!6.05!ZNF114;;chr3:170076223..170076242,+!p6@SKIL!0.76!5.50!SKIL;;chr1:202777535..202777556,-!p1@KDM5B!0.75!172.47!KDM5B;;chr19:19779619..19779670,+!p1@ZNF101!0.75!14.17!ZNF101;;chr12:3068501..3068515,+!p4@TEAD4!0.75!8.39!TEAD4;;chr1:151032922..151032951,+!p2@MLLT11!0.75!8.11!MLLT11;;chr1:91487013..91487070,-!p6@ZNF644!0.75!6.74!ZNF644;;chr19:49864746..49864780,-!p2@TEAD2!0.75!6.60!TEAD2;;chr8:102504690..102504704,+!p3@GRHL2!0.75!4.68!GRHL2;;chr13:41240717..41240735,-!p2@FOXO1!0.74!33.97!FOXO1;;chr19:53758058..53758088,-!p2@ZNF677!0.74!16.37!ZNF677;;chr19:53868940..53868990,+!p1@ZNF525,p2@ZNF765!0.74!13.89!ZNF525;;chr2:121493425..121493474,+!p1@GLI2!0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| ||
|ffid_belonging_in_development=CL:0000133,CL:0000031,CL:0000221 | |ffid_belonging_in_development=CL:0000133,CL:0000031,CL:0000221 | ||
Line 41: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/iPS%2520differentiation%2520to%2520neuron%252c%2520control%2520donor%2520C32-CRL1502%252c%2520day00%252c%2520rep1.CNhs13826.13433-144E4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/iPS%2520differentiation%2520to%2520neuron%252c%2520control%2520donor%2520C32-CRL1502%252c%2520day00%252c%2520rep1.CNhs13826.13433-144E4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/iPS%2520differentiation%2520to%2520neuron%252c%2520control%2520donor%2520C32-CRL1502%252c%2520day00%252c%2520rep1.CNhs13826.13433-144E4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/iPS%2520differentiation%2520to%2520neuron%252c%2520control%2520donor%2520C32-CRL1502%252c%2520day00%252c%2520rep1.CNhs13826.13433-144E4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/iPS%2520differentiation%2520to%2520neuron%252c%2520control%2520donor%2520C32-CRL1502%252c%2520day00%252c%2520rep1.CNhs13826.13433-144E4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:13433-144E4 | |id=FF:13433-144E4 | ||
|is_a=FF:0000210;;FF:0200003 | |is_a=FF:0000210;;FF:0200003 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs13826 | |library_id=CNhs13826 | ||
|library_id_phase_based= | |library_id_phase_based=2:CNhs13826 | ||
|name=iPS differentiation to neuron, control donor C32-CRL1502 | |microRNAs= | ||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;13433 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;13433 | |||
|name=iPS differentiation to neuron, control donor C32-CRL1502 | |||
|namespace= | |namespace= | ||
|part_of= | |part_of= | ||
Line 53: | Line 63: | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq= | |profile_srnaseq= | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| ||
Line 65: | Line 76: | ||
|rna_rin=10 | |rna_rin=10 | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.44E+06 | ||
|rna_weight_ug=5 | |rna_weight_ug=5 | ||
|sample_age=12wk gestation | |sample_age=12wk gestation | ||
|sample_category=time courses | |sample_category=time courses | ||
Line 88: | Line 99: | ||
|sample_strain= | |sample_strain= | ||
|sample_tissue= | |sample_tissue= | ||
|time= day00 | |||
|timecourse=Human_iPS_to_neuron_(wt)_2 | |||
|top_motifs=OCT4_SOX2{dimer}:3.87930755594;POU2F1..3:2.39694370186;NFY{A,B,C}:2.17002785368;SOX{8,9,10}:2.11767876123;SP1:1.86918129714;E2F1..5:1.74280008079;SNAI1..3:1.60651072238;PBX1:1.51634665538;PATZ1:1.50248889854;GFI1:1.45428649877;XCPE1{core}:1.44250235086;CUX2:1.41474929797;PITX1..3:1.38744497457;ZNF143:1.32465197972;SOX2:1.30615619903;TOPORS:1.26453984692;CDX1,2,4:1.22137635205;ZEB1:1.14278292871;LMO2:1.1312998109;AIRE:1.06578463794;CDC5L:1.05291432144;YY1:0.991826677634;MYOD1:0.983889677744;TFDP1:0.967278534147;RORA:0.93146291617;ARID5B:0.930595317043;ONECUT1,2:0.929010444728;FOXP1:0.911640881503;bHLH_family:0.874822977198;MZF1:0.850917310849;NRF1:0.782207909822;POU3F1..4:0.776322182775;ZIC1..3:0.755957934343;RBPJ:0.738782137884;ALX1:0.720409159802;PAX8:0.714873780768;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.685380223452;NKX6-1,2:0.683058270934;HOX{A4,D4}:0.679237758352;SOX17:0.674521067015;ATF4:0.666461967885;POU5F1:0.655470563218;EVI1:0.637128104218;STAT1,3:0.623355434064;EBF1:0.620285071494;T:0.61371320748;ELK1,4_GABP{A,B1}:0.605322508886;IKZF2:0.602510325461;FOXM1:0.575390539045;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.516437658185;ZNF384:0.514642216301;KLF4:0.457014346409;FOXD3:0.443481903386;ZFP161:0.406568035219;UFEwm:0.401761677306;FOXQ1:0.393243819713;TBP:0.373051810573;NKX2-3_NKX2-5:0.358748390018;REST:0.332032954139;GFI1B:0.316145533456;LEF1_TCF7_TCF7L1,2:0.307030683325;MAZ:0.306391241648;FOX{I1,J2}:0.279147406083;NR5A1,2:0.271736587509;TP53:0.211977564653;MYFfamily:0.194927418804;HIC1:0.188984761389;ZBTB16:0.186312550535;BREu{core}:0.180342692142;MYB:0.160892903512;VSX1,2:0.142017908336;HIF1A:0.119576652086;STAT5{A,B}:0.118896583988;NKX2-2,8:0.0994733936617;NANOG:0.0955566347256;MTF1:0.0768610424206;HAND1,2:0.0738980866405;TEAD1:0.0731823290725;FOXL1:0.0590096657772;MTE{core}:0.0146844272745;CREB1:0.0112416401605;PAX5:-0.000441052182195;PAX1,9:-0.0024766949146;TFAP2B:-0.010583164721;JUN:-0.0335748192758;CRX:-0.057738371499;ZBTB6:-0.0718233098043;ESRRA:-0.0958134919684;LHX3,4:-0.142730421517;GATA4:-0.143415058642;HNF4A_NR2F1,2:-0.144866699633;ATF2:-0.151095265628;ZNF423:-0.154219591042;NKX3-1:-0.154284216732;NANOG{mouse}:-0.156872318258;ATF5_CREB3:-0.163205192132;PAX4:-0.166209497453;HOX{A6,A7,B6,B7}:-0.166222492106;HOX{A5,B5}:-0.203629541305;EN1,2:-0.220579014093;NHLH1,2:-0.221830440656;HNF1A:-0.267233388383;PRDM1:-0.277499834447;NFKB1_REL_RELA:-0.278554404462;FOXN1:-0.281284055904;RFX1:-0.302517226575;RREB1:-0.304906982456;NKX2-1,4:-0.305518745991;MED-1{core}:-0.310824828412;GTF2I:-0.323493852505;TBX4,5:-0.330617058512;MYBL2:-0.342154815616;NR6A1:-0.34835560207;IKZF1:-0.385584942229;TFAP2{A,C}:-0.388521300736;PAX2:-0.390592896102;SREBF1,2:-0.390980304161;XBP1:-0.404543796243;EGR1..3:-0.410184178999;GCM1,2:-0.432152508783;DBP:-0.437106827284;ALX4:-0.441468119883;FOXO1,3,4:-0.448746353839;GATA6:-0.466590834881;PAX3,7:-0.493342749208;HMGA1,2:-0.531894762744;PPARG:-0.532198080947;FOX{F1,F2,J1}:-0.532492657993;POU1F1:-0.546045922641;POU6F1:-0.551894896835;FOX{D1,D2}:-0.57716877346;DMAP1_NCOR{1,2}_SMARC:-0.595281693789;MEF2{A,B,C,D}:-0.598135158762;NR1H4:-0.599312787604;FOXP3:-0.606531071853;GTF2A1,2:-0.606761865655;RXR{A,B,G}:-0.610252923607;BACH2:-0.619654398153;TFAP4:-0.655833346977;SPIB:-0.65783110914;RFX2..5_RFXANK_RFXAP:-0.670511567235;NFE2L2:-0.691537847699;ESR1:-0.700463861195;NFE2:-0.711407905357;SPI1:-0.726283971555;NFE2L1:-0.732431582112;FOS_FOS{B,L1}_JUN{B,D}:-0.744488411109;RUNX1..3:-0.754899962398;HSF1,2:-0.76020277939;ADNP_IRX_SIX_ZHX:-0.782305856292;SPZ1:-0.808856557975;FOSL2:-0.823088470119;SOX5:-0.839134181701;SRF:-0.840685793279;AR:-0.882242580975;PRRX1,2:-0.887515903768;AHR_ARNT_ARNT2:-0.887737175505;ELF1,2,4:-0.904039404482;ZNF238:-0.915542804476;HMX1:-0.936281508717;TEF:-0.938172201436;NKX3-2:-0.957260538829;HLF:-1.0104382978;TFCP2:-1.05554645276;ZNF148:-1.09756731282;RXRA_VDR{dimer}:-1.10432851016;FOXA2:-1.12558669658;CEBPA,B_DDIT3:-1.12742072026;ETS1,2:-1.14599926135;HBP1_HMGB_SSRP1_UBTF:-1.17650897198;IRF1,2:-1.19851795507;TLX2:-1.25893226022;NR3C1:-1.26078249022;PAX6:-1.27665249932;BPTF:-1.34605954682;NFIX:-1.36611212924;NFATC1..3:-1.37966369812;HES1:-1.40249569701;HOXA9_MEIS1:-1.41602575449;NFIL3:-1.430953776;IRF7:-1.43755331084;GZF1:-1.51064166147;EP300:-1.57326233493;STAT2,4,6:-1.59135384983;GLI1..3:-1.61548059701;TAL1_TCF{3,4,12}:-1.65076914677;TLX1..3_NFIC{dimer}:-1.66220884388;TGIF1:-1.66860215255;ATF6:-1.67321833894;MAFB:-1.90229604737;PDX1:-1.97771510505;SMAD1..7,9:-2.24592239245 | |top_motifs=OCT4_SOX2{dimer}:3.87930755594;POU2F1..3:2.39694370186;NFY{A,B,C}:2.17002785368;SOX{8,9,10}:2.11767876123;SP1:1.86918129714;E2F1..5:1.74280008079;SNAI1..3:1.60651072238;PBX1:1.51634665538;PATZ1:1.50248889854;GFI1:1.45428649877;XCPE1{core}:1.44250235086;CUX2:1.41474929797;PITX1..3:1.38744497457;ZNF143:1.32465197972;SOX2:1.30615619903;TOPORS:1.26453984692;CDX1,2,4:1.22137635205;ZEB1:1.14278292871;LMO2:1.1312998109;AIRE:1.06578463794;CDC5L:1.05291432144;YY1:0.991826677634;MYOD1:0.983889677744;TFDP1:0.967278534147;RORA:0.93146291617;ARID5B:0.930595317043;ONECUT1,2:0.929010444728;FOXP1:0.911640881503;bHLH_family:0.874822977198;MZF1:0.850917310849;NRF1:0.782207909822;POU3F1..4:0.776322182775;ZIC1..3:0.755957934343;RBPJ:0.738782137884;ALX1:0.720409159802;PAX8:0.714873780768;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.685380223452;NKX6-1,2:0.683058270934;HOX{A4,D4}:0.679237758352;SOX17:0.674521067015;ATF4:0.666461967885;POU5F1:0.655470563218;EVI1:0.637128104218;STAT1,3:0.623355434064;EBF1:0.620285071494;T:0.61371320748;ELK1,4_GABP{A,B1}:0.605322508886;IKZF2:0.602510325461;FOXM1:0.575390539045;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.516437658185;ZNF384:0.514642216301;KLF4:0.457014346409;FOXD3:0.443481903386;ZFP161:0.406568035219;UFEwm:0.401761677306;FOXQ1:0.393243819713;TBP:0.373051810573;NKX2-3_NKX2-5:0.358748390018;REST:0.332032954139;GFI1B:0.316145533456;LEF1_TCF7_TCF7L1,2:0.307030683325;MAZ:0.306391241648;FOX{I1,J2}:0.279147406083;NR5A1,2:0.271736587509;TP53:0.211977564653;MYFfamily:0.194927418804;HIC1:0.188984761389;ZBTB16:0.186312550535;BREu{core}:0.180342692142;MYB:0.160892903512;VSX1,2:0.142017908336;HIF1A:0.119576652086;STAT5{A,B}:0.118896583988;NKX2-2,8:0.0994733936617;NANOG:0.0955566347256;MTF1:0.0768610424206;HAND1,2:0.0738980866405;TEAD1:0.0731823290725;FOXL1:0.0590096657772;MTE{core}:0.0146844272745;CREB1:0.0112416401605;PAX5:-0.000441052182195;PAX1,9:-0.0024766949146;TFAP2B:-0.010583164721;JUN:-0.0335748192758;CRX:-0.057738371499;ZBTB6:-0.0718233098043;ESRRA:-0.0958134919684;LHX3,4:-0.142730421517;GATA4:-0.143415058642;HNF4A_NR2F1,2:-0.144866699633;ATF2:-0.151095265628;ZNF423:-0.154219591042;NKX3-1:-0.154284216732;NANOG{mouse}:-0.156872318258;ATF5_CREB3:-0.163205192132;PAX4:-0.166209497453;HOX{A6,A7,B6,B7}:-0.166222492106;HOX{A5,B5}:-0.203629541305;EN1,2:-0.220579014093;NHLH1,2:-0.221830440656;HNF1A:-0.267233388383;PRDM1:-0.277499834447;NFKB1_REL_RELA:-0.278554404462;FOXN1:-0.281284055904;RFX1:-0.302517226575;RREB1:-0.304906982456;NKX2-1,4:-0.305518745991;MED-1{core}:-0.310824828412;GTF2I:-0.323493852505;TBX4,5:-0.330617058512;MYBL2:-0.342154815616;NR6A1:-0.34835560207;IKZF1:-0.385584942229;TFAP2{A,C}:-0.388521300736;PAX2:-0.390592896102;SREBF1,2:-0.390980304161;XBP1:-0.404543796243;EGR1..3:-0.410184178999;GCM1,2:-0.432152508783;DBP:-0.437106827284;ALX4:-0.441468119883;FOXO1,3,4:-0.448746353839;GATA6:-0.466590834881;PAX3,7:-0.493342749208;HMGA1,2:-0.531894762744;PPARG:-0.532198080947;FOX{F1,F2,J1}:-0.532492657993;POU1F1:-0.546045922641;POU6F1:-0.551894896835;FOX{D1,D2}:-0.57716877346;DMAP1_NCOR{1,2}_SMARC:-0.595281693789;MEF2{A,B,C,D}:-0.598135158762;NR1H4:-0.599312787604;FOXP3:-0.606531071853;GTF2A1,2:-0.606761865655;RXR{A,B,G}:-0.610252923607;BACH2:-0.619654398153;TFAP4:-0.655833346977;SPIB:-0.65783110914;RFX2..5_RFXANK_RFXAP:-0.670511567235;NFE2L2:-0.691537847699;ESR1:-0.700463861195;NFE2:-0.711407905357;SPI1:-0.726283971555;NFE2L1:-0.732431582112;FOS_FOS{B,L1}_JUN{B,D}:-0.744488411109;RUNX1..3:-0.754899962398;HSF1,2:-0.76020277939;ADNP_IRX_SIX_ZHX:-0.782305856292;SPZ1:-0.808856557975;FOSL2:-0.823088470119;SOX5:-0.839134181701;SRF:-0.840685793279;AR:-0.882242580975;PRRX1,2:-0.887515903768;AHR_ARNT_ARNT2:-0.887737175505;ELF1,2,4:-0.904039404482;ZNF238:-0.915542804476;HMX1:-0.936281508717;TEF:-0.938172201436;NKX3-2:-0.957260538829;HLF:-1.0104382978;TFCP2:-1.05554645276;ZNF148:-1.09756731282;RXRA_VDR{dimer}:-1.10432851016;FOXA2:-1.12558669658;CEBPA,B_DDIT3:-1.12742072026;ETS1,2:-1.14599926135;HBP1_HMGB_SSRP1_UBTF:-1.17650897198;IRF1,2:-1.19851795507;TLX2:-1.25893226022;NR3C1:-1.26078249022;PAX6:-1.27665249932;BPTF:-1.34605954682;NFIX:-1.36611212924;NFATC1..3:-1.37966369812;HES1:-1.40249569701;HOXA9_MEIS1:-1.41602575449;NFIL3:-1.430953776;IRF7:-1.43755331084;GZF1:-1.51064166147;EP300:-1.57326233493;STAT2,4,6:-1.59135384983;GLI1..3:-1.61548059701;TAL1_TCF{3,4,12}:-1.65076914677;TLX1..3_NFIC{dimer}:-1.66220884388;TGIF1:-1.66860215255;ATF6:-1.67321833894;MAFB:-1.90229604737;PDX1:-1.97771510505;SMAD1..7,9:-2.24592239245 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:13433-144E4;search_select_hide=table117:FF:13433-144E4 | |||
}} | }} |
Latest revision as of 18:59, 4 June 2020
Name: | iPS differentiation to neuron, control donor C32-CRL1502 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs13826 |
Sample type: | time courses |
Genomic View: | UCSC |
RefEX: | Specific genes |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13826
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13826
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.135 |
10 | 10 | 0.143 |
100 | 100 | 0.63 |
101 | 101 | 0.682 |
102 | 102 | 0.66 |
103 | 103 | 0.0581 |
104 | 104 | 0.643 |
105 | 105 | 0.171 |
106 | 106 | 0.0485 |
107 | 107 | 0.335 |
108 | 108 | 0.94 |
109 | 109 | 0.288 |
11 | 11 | 0.19 |
110 | 110 | 0.212 |
111 | 111 | 0.0675 |
112 | 112 | 0.25 |
113 | 113 | 0.122 |
114 | 114 | 0.0435 |
115 | 115 | 0.209 |
116 | 116 | 0.731 |
117 | 117 | 0.322 |
118 | 118 | 0.51 |
119 | 119 | 0.216 |
12 | 12 | 0.977 |
120 | 120 | 0.863 |
121 | 121 | 0.675 |
122 | 122 | 0.789 |
123 | 123 | 0.856 |
124 | 124 | 0.232 |
125 | 125 | 0.656 |
126 | 126 | 0.413 |
127 | 127 | 0.303 |
128 | 128 | 0.34 |
129 | 129 | 0.217 |
13 | 13 | 0.768 |
130 | 130 | 0.628 |
131 | 131 | 0.72 |
132 | 132 | 0.929 |
133 | 133 | 0.0478 |
134 | 134 | 0.425 |
135 | 135 | 0.00142 |
136 | 136 | 0.0767 |
137 | 137 | 0.466 |
138 | 138 | 0.18 |
139 | 139 | 0.0187 |
14 | 14 | 0.661 |
140 | 140 | 0.0261 |
141 | 141 | 0.328 |
142 | 142 | 0.334 |
143 | 143 | 0.00462 |
144 | 144 | 0.609 |
145 | 145 | 0.62 |
146 | 146 | 0.457 |
147 | 147 | 0.679 |
148 | 148 | 0.0381 |
149 | 149 | 0.0153 |
15 | 15 | 0.0885 |
150 | 150 | 0.675 |
151 | 151 | 0.0885 |
152 | 152 | 0.69 |
153 | 153 | 0.151 |
154 | 154 | 0.56 |
155 | 155 | 0.949 |
156 | 156 | 0.387 |
157 | 157 | 0.556 |
158 | 158 | 0.164 |
159 | 159 | 0.221 |
16 | 16 | 0.392 |
160 | 160 | 0.447 |
161 | 161 | 0.666 |
162 | 162 | 0.349 |
163 | 163 | 0.428 |
164 | 164 | 0.335 |
165 | 165 | 0.415 |
166 | 166 | 0.871 |
167 | 167 | 0.147 |
168 | 168 | 0.19 |
169 | 169 | 7.60522e-4 |
17 | 17 | 0.172 |
18 | 18 | 0.134 |
19 | 19 | 0.138 |
2 | 2 | 0.416 |
20 | 20 | 0.904 |
21 | 21 | 0.746 |
22 | 22 | 0.109 |
23 | 23 | 0.0116 |
24 | 24 | 0.765 |
25 | 25 | 0.439 |
26 | 26 | 0.587 |
27 | 27 | 0.272 |
28 | 28 | 0.911 |
29 | 29 | 0.547 |
3 | 3 | 0.157 |
30 | 30 | 0.851 |
31 | 31 | 0.716 |
32 | 32 | 0.0922 |
33 | 33 | 0.954 |
34 | 34 | 0.509 |
35 | 35 | 0.23 |
36 | 36 | 0.506 |
37 | 37 | 0.225 |
38 | 38 | 0.261 |
39 | 39 | 0.804 |
4 | 4 | 0.552 |
40 | 40 | 0.909 |
41 | 41 | 0.0909 |
42 | 42 | 0.323 |
43 | 43 | 0.0988 |
44 | 44 | 0.931 |
45 | 45 | 0.386 |
46 | 46 | 0.0605 |
47 | 47 | 0.884 |
48 | 48 | 0.758 |
49 | 49 | 0.0887 |
5 | 5 | 0.08 |
50 | 50 | 0.928 |
51 | 51 | 0.401 |
52 | 52 | 0.368 |
53 | 53 | 0.453 |
54 | 54 | 0.32 |
55 | 55 | 0.0478 |
56 | 56 | 0.579 |
57 | 57 | 0.534 |
58 | 58 | 0.0608 |
59 | 59 | 0.161 |
6 | 6 | 0.879 |
60 | 60 | 0.0563 |
61 | 61 | 0.953 |
62 | 62 | 0.0176 |
63 | 63 | 0.178 |
64 | 64 | 0.467 |
65 | 65 | 0.0537 |
66 | 66 | 0.529 |
67 | 67 | 0.334 |
68 | 68 | 0.935 |
69 | 69 | 0.827 |
7 | 7 | 0.354 |
70 | 70 | 0.0141 |
71 | 71 | 0.0881 |
72 | 72 | 0.445 |
73 | 73 | 0.301 |
74 | 74 | 0.357 |
75 | 75 | 0.205 |
76 | 76 | 0.582 |
77 | 77 | 0.22 |
78 | 78 | 0.568 |
79 | 79 | 0.151 |
8 | 8 | 0.137 |
80 | 80 | 0.06 |
81 | 81 | 0.331 |
82 | 82 | 0.124 |
83 | 83 | 0.654 |
84 | 84 | 0.522 |
85 | 85 | 0.036 |
86 | 86 | 0.601 |
87 | 87 | 0.0923 |
88 | 88 | 0.756 |
89 | 89 | 0.0763 |
9 | 9 | 0.102 |
90 | 90 | 0.325 |
91 | 91 | 0.18 |
92 | 92 | 0.031 |
93 | 93 | 0.123 |
94 | 94 | 0.0817 |
95 | 95 | 0.961 |
96 | 96 | 0.0322 |
97 | 97 | 0.566 |
98 | 98 | 0.169 |
99 | 99 | 0.626 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13826
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000540 (neuron)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0002319 (neural cell)
0000393 (electrically responsive cell)
0000211 (electrically active cell)
0000404 (electrically signaling cell)
0000255 (eukaryotic cell)
FF: FANTOM5
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0200005 (iPS differentiation to neuron sample)
0200003 (iPS differentiation to neuron, control sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000031 (neuroblast)
CL:0000221 (ectodermal cell)