FF:10048-101G3: Difference between revisions

Latest revision as of 12:17, 3 June 2020

Name:	smooth muscle, adult, pool1
Species:	Human (Homo sapiens)
Library ID:	CNhs11755
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	smooth muscle
dev stage	20-68 years old adult
sex	male
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Clontech
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	9052728A
catalog number	Cat:636547
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005760

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11755		CAGE		DRX008726		DRR009598

Accession ID Hg19

Library id		BAM		CTSS
CNhs11755		DRZ001023		DRZ002408

Accession ID Hg38

Library id		BAM		CTSS
CNhs11755		DRZ012373		DRZ013758

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.172
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.369
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.035
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.173
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.0952
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.0952
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.00938
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.186
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.387
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.0952
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.347
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.049
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.0876
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.0952
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0.0952
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.597
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.0613
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.162
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.173
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.0623
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.613
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.394
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.0952
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.0952
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.134
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.173
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	1.186
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	1.216
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.0952
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.0952
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.239
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11755

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00203
MA0003.1	MA0003.1	0.883
MA0004.1	MA0004.1	0.00874
MA0006.1	MA0006.1	0.955
MA0007.1	MA0007.1	0.115
MA0009.1	MA0009.1	0.478
MA0014.1	MA0014.1	0.182
MA0017.1	MA0017.1	0.103
MA0018.2	MA0018.2	0.318
MA0019.1	MA0019.1	0.805
MA0024.1	MA0024.1	0.00942
MA0025.1	MA0025.1	0.155
MA0027.1	MA0027.1	0.355
MA0028.1	MA0028.1	8.4276e-7
MA0029.1	MA0029.1	0.145
MA0030.1	MA0030.1	0.0686
MA0031.1	MA0031.1	0.0278
MA0035.2	MA0035.2	0.273
MA0038.1	MA0038.1	0.159
MA0039.2	MA0039.2	0.0196
MA0040.1	MA0040.1	0.805
MA0041.1	MA0041.1	0.772
MA0042.1	MA0042.1	0.59
MA0043.1	MA0043.1	0.0348
MA0046.1	MA0046.1	0.313
MA0047.2	MA0047.2	0.478
MA0048.1	MA0048.1	0.476
MA0050.1	MA0050.1	0.987
MA0051.1	MA0051.1	0.191
MA0052.1	MA0052.1	0.00401
MA0055.1	MA0055.1	1.18465e-4
MA0057.1	MA0057.1	0.947
MA0058.1	MA0058.1	0.00191
MA0059.1	MA0059.1	1.40039e-4
MA0060.1	MA0060.1	5.62475e-7
MA0061.1	MA0061.1	0.00133
MA0062.2	MA0062.2	1.09545e-12
MA0065.2	MA0065.2	0.0231
MA0066.1	MA0066.1	0.00176
MA0067.1	MA0067.1	0.326
MA0068.1	MA0068.1	0.188
MA0069.1	MA0069.1	0.766
MA0070.1	MA0070.1	0.0993
MA0071.1	MA0071.1	0.15
MA0072.1	MA0072.1	0.124
MA0073.1	MA0073.1	0.332
MA0074.1	MA0074.1	0.909
MA0076.1	MA0076.1	1.35825e-8
MA0077.1	MA0077.1	0.197
MA0078.1	MA0078.1	0.193
MA0079.2	MA0079.2	0.679
MA0080.2	MA0080.2	7.71595e-7
MA0081.1	MA0081.1	0.0102
MA0083.1	MA0083.1	1.88499e-14
MA0084.1	MA0084.1	0.883
MA0087.1	MA0087.1	0.926
MA0088.1	MA0088.1	0.165
MA0090.1	MA0090.1	0.0386
MA0091.1	MA0091.1	0.164
MA0092.1	MA0092.1	0.211
MA0093.1	MA0093.1	0.00537
MA0099.2	MA0099.2	2.2029e-21
MA0100.1	MA0100.1	0.0358
MA0101.1	MA0101.1	0.00235
MA0102.2	MA0102.2	0.152
MA0103.1	MA0103.1	0.0237
MA0104.2	MA0104.2	3.867e-4
MA0105.1	MA0105.1	1.39397e-6
MA0106.1	MA0106.1	0.0709
MA0107.1	MA0107.1	7.00303e-4
MA0108.2	MA0108.2	6.88836e-6
MA0111.1	MA0111.1	0.959
MA0112.2	MA0112.2	0.0126
MA0113.1	MA0113.1	0.715
MA0114.1	MA0114.1	0.00606
MA0115.1	MA0115.1	0.141
MA0116.1	MA0116.1	4.328e-4
MA0117.1	MA0117.1	0.471
MA0119.1	MA0119.1	0.997
MA0122.1	MA0122.1	0.914
MA0124.1	MA0124.1	0.313
MA0125.1	MA0125.1	0.575
MA0131.1	MA0131.1	0.353
MA0135.1	MA0135.1	0.436
MA0136.1	MA0136.1	6.39458e-12
MA0137.2	MA0137.2	0.924
MA0138.2	MA0138.2	0.269
MA0139.1	MA0139.1	0.17
MA0140.1	MA0140.1	0.0653
MA0141.1	MA0141.1	0.0282
MA0142.1	MA0142.1	0.014
MA0143.1	MA0143.1	0.726
MA0144.1	MA0144.1	0.901
MA0145.1	MA0145.1	0.416
MA0146.1	MA0146.1	0.156
MA0147.1	MA0147.1	1.17154e-4
MA0148.1	MA0148.1	0.289
MA0149.1	MA0149.1	0.105
MA0150.1	MA0150.1	6.19699e-5
MA0152.1	MA0152.1	0.526
MA0153.1	MA0153.1	0.821
MA0154.1	MA0154.1	0.00917
MA0155.1	MA0155.1	0.823
MA0156.1	MA0156.1	1.57829e-12
MA0157.1	MA0157.1	0.283
MA0159.1	MA0159.1	0.127
MA0160.1	MA0160.1	0.0911
MA0162.1	MA0162.1	0.311
MA0163.1	MA0163.1	8.51351e-5
MA0164.1	MA0164.1	0.467
MA0258.1	MA0258.1	0.0141
MA0259.1	MA0259.1	0.0348

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11755

Novel motif	Logo	P-value
1	1	0.0479
10	10	0.234
100	100	0.115
101	101	0.434
102	102	0.221
103	103	0.0556
104	104	0.459
105	105	0.586
106	106	0.403
107	107	0.334
108	108	0.861
109	109	0.00398
11	11	0.0572
110	110	0.16
111	111	0.0742
112	112	0.67
113	113	0.196
114	114	0.0624
115	115	0.322
116	116	0.128
117	117	0.0138
118	118	0.0596
119	119	0.714
12	12	0.227
120	120	0.0666
121	121	0.253
122	122	0.0847
123	123	0.923
124	124	0.654
125	125	0.528
126	126	0.734
127	127	0.528
128	128	0.464
129	129	0.499
13	13	0.059
130	130	0.738
131	131	0.322
132	132	0.0355
133	133	0.166
134	134	0.253
135	135	0.135
136	136	0.263
137	137	0.556
138	138	0.986
139	139	0.869
14	14	0.896
140	140	0.913
141	141	0.794
142	142	0.965
143	143	0.00356
144	144	0.325
145	145	0.783
146	146	0.379
147	147	0.491
148	148	0.397
149	149	0.21
15	15	0.0145
150	150	0.394
151	151	0.773
152	152	0.218
153	153	0.0824
154	154	0.872
155	155	0.486
156	156	0.246
157	157	0.676
158	158	0.606
159	159	0.625
16	16	0.16
160	160	0.751
161	161	0.508
162	162	0.589
163	163	0.39
164	164	0.11
165	165	0.46
166	166	0.0817
167	167	0.231
168	168	0.948
169	169	0.392
17	17	0.449
18	18	0.0691
19	19	0.265
2	2	0.0603
20	20	0.0808
21	21	0.538
22	22	0.881
23	23	0.734
24	24	0.117
25	25	0.16
26	26	0.0678
27	27	0.765
28	28	0.479
29	29	0.00156
3	3	0.321
30	30	0.148
31	31	0.996
32	32	0.489
33	33	0.117
34	34	0.533
35	35	0.375
36	36	0.00846
37	37	0.13
38	38	0.503
39	39	0.405
4	4	0.127
40	40	0.00904
41	41	0.0199
42	42	0.253
43	43	0.274
44	44	0.967
45	45	0.492
46	46	0.19
47	47	0.059
48	48	0.171
49	49	0.378
5	5	0.682
50	50	0.798
51	51	0.553
52	52	0.31
53	53	0.709
54	54	0.996
55	55	0.77
56	56	0.659
57	57	0.476
58	58	0.58
59	59	0.464
6	6	0.639
60	60	0.856
61	61	0.286
62	62	0.389
63	63	0.409
64	64	0.177
65	65	0.782
66	66	0.00135
67	67	0.838
68	68	0.121
69	69	0.743
7	7	0.123
70	70	0.572
71	71	0.0475
72	72	0.621
73	73	0.0389
74	74	0.447
75	75	0.0208
76	76	0.189
77	77	0.433
78	78	0.102
79	79	0.333
8	8	0.191
80	80	0.0495
81	81	0.369
82	82	0.886
83	83	0.896
84	84	0.874
85	85	0.534
86	86	0.831
87	87	1.03148e-4
88	88	0.91
89	89	0.628
9	9	0.805
90	90	0.202
91	91	0.0499
92	92	0.57
93	93	0.013
94	94	0.0594
95	95	5.65349e-5
96	96	0.491
97	97	0.86
98	98	0.492
99	99	0.307

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11755

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010048 human smooth muscle - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0001135 (smooth muscle tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002385 (muscle tissue)
0010317 (germ layer / neural crest derived structure)
0001015 (musculature)
0002204 (musculoskeletal system)
0000383 (musculature of body)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010048 (human smooth muscle - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
 |DRA_sample_Accession=CAGE@SAMD00005760
-|accession_numbers=CAGE;DRX008726;DRR009598;DRZ001023;DRZ002408
+|accession_numbers=CAGE;DRX008726;DRR009598;DRZ001023;DRZ002408;DRZ012373;DRZ013758
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0001135,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002385,UBERON:0010317,UBERON:0001015,UBERON:0002204,UBERON:0000383
 |ancestors_in_cell_lineage_facet=
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr19:46801639..46801699,+!p1@HIF3A!2.08!118.65!HIF3A;;chr16:86544113..86544145,+!p1@FOXF1!2.05!138.02!FOXF1;;chr7:35293685..35293718,-!p1@TBX20!2.05!111.05!TBX20;;chr2:19558373..19558392,-!p1@OSR1!1.90!205.68!OSR1;;chr4:174451370..174451387,-!p1@HAND2!1.89!76.49!HAND2;;chr6:134210243..134210257,+!p1@TCF21!1.88!74.03!TCF21;;chr17:53342311..53342400,+!p1@HLF!1.73!59.82!HLF;;chr12:52445218..52445237,+!p1@NR4A1!1.68!563.11!NR4A1;;chr12:52437488..52437507,+!p2@NR4A1!1.60!38.73!NR4A1;;chr1:61548374..61548415,+!p4@NFIA!1.59!68.64!NFIA;;chr11:113930425..113930471,+!p1@ZBTB16!1.56!50.26!ZBTB16;;chr5:134369879..134369898,-!p2@PITX1!1.55!34.08!PITX1;;chrY:21906594..21906622,-!p1@KDM5D!1.45!27.21!KDM5D;;chr4:174450089..174450153,-!p2@HAND2!1.43!25.74!HAND2;;chr17:59529743..59529798,+!p1@TBX4!1.42!25.25!TBX4;;chr8:106330656..106330684,+!p1@ZFPM2!1.41!62.76!ZFPM2;;chr5:134369905..134369972,-!p1@PITX1!1.40!37.02!PITX1;;chr20:62680984..62680999,-!p1@SOX18!1.38!30.40!SOX18;;chr4:81118647..81118666,+!p1@PRDM8!1.38!29.91!PRDM8;;chr1:164528410..164528428,+!p1@PBX1!1.32!144.15!PBX1;;chr7:114054885..114054910,+!p4@FOXP2!1.32!19.86!FOXP2;;chr9:102584159..102584174,+!p2@NR4A3!1.31!34.81!NR4A3;;chr11:12696579..12696611,+!p4@TEAD1!1.31!19.61!TEAD1;;chr16:67198633..67198671,+!p1@HSF4!1.31!19.61!HSF4;;chr1:61548069..61548102,+!p3@NFIA!1.30!45.35!NFIA;;chr3:128212033..128212051,-!p1@GATA2!1.30!19.12!GATA2;;chr7:113726357..113726443,+!p1@FOXP2!1.29!31.62!FOXP2;;chr1:201979703..201979721,+!p2@ELF3!1.29!18.63!ELF3;;chr20:61051039..61051057,-!p1@GATA5!1.28!18.14!GATA5;;chr18:19749541..19749557,+!p1@GATA6!1.27!55.16!GATA6;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.25!16.92!PEG3;;chr7:27239740..27239759,-!p2@HOXA13!1.25!16.67!HOXA13;;chr7:27192185..27192209,-!p1@HOXA3!1.24!16.18!HOXA3;;chr11:113930401..113930422,+!p3@ZBTB16!1.24!16.18!ZBTB16;;chrX:131545395..131545413,-!p16@MBNL3!1.23!15.93!MBNL3;;chr5:158526917..158526932,-!p1@EBF1!1.22!38.24!EBF1;;chr22:38380543..38380569,-!p1@SOX10!1.22!15.69!SOX10;;chr1:44513995..44514031,+!p1@KLF17!1.22!15.44!KLF17;;chr15:42749722..42749739,-!p2@ZFP106!1.21!26.97!ZFP106;;chr17:38256822..38256851,-!p1@NR1D1!1.20!115.71!NR1D1;;chr3:71294213..71294240,-!p30@FOXP1!1.20!14.95!FOXP1;;chr5:122424955..122424988,+!p2@PRDM6!1.20!14.95!PRDM6;;chr21:39870339..39870443,-!p1@ERG!1.20!14.71!ERG;;chrY:21906761..21906810,-!p2@KDM5D!1.19!14.46!KDM5D;;chr4:174451350..174451363,-!p3@HAND2!1.18!13.97!HAND2;;chr1:61548225..61548299,+!p1@NFIA!1.17!176.75!NFIA;;chr16:79634624..79634642,-!p1@MAF!1.17!54.18!MAF;;chr1:61547894..61547968,+!p2@NFIA!1.17!39.96!NFIA;;chr11:113930291..113930339,+!p2@ZBTB16!1.16!22.06!ZBTB16;;chr5:122424918..122424944,+!p1@PRDM6!1.15!12.99!PRDM6;;chr7:63505799..63505904,+!p1@ZNF727!1.15!12.99!ZNF727;;chr6:19837592..19837621,+!p1@ID4!1.14!78.20!ID4;;chr16:67198683..67198698,+!p2@HSF4!1.14!12.75!HSF4;;chr17:7492684..7492778,-!p2@SOX15!1.13!26.48!SOX15;;chr4:111544219..111544240,-!p1@PITX2!1.13!12.50!PITX2;;chr1:164528445..164528459,+!p2@PBX1!1.11!37.26!PBX1;;chr17:38256799..38256815,-!p3@NR1D1!1.11!21.82!NR1D1;;chr16:79634595..79634620,-!p2@MAF!1.11!21.57!MAF;;chr7:44143925..44143970,+!p1@AEBP1!1.10!259.61!AEBP1;;chr9:102584262..102584276,+!p1@NR4A3!1.10!25.74!NR4A3;;chr4:111558135..111558198,-!p2@PITX2!1.10!11.52!PITX2;;chr2:145277882..145277967,-!p3@ZEB2!1.09!19.61!ZEB2;;chr2:66662281..66662308,+!p1@MEIS1!1.08!38.49!MEIS1;;chr6:1312325..1312340,+!p1@FOXQ1!1.08!17.90!FOXQ1;;chr1:40105299..40105326,-!p1@HEYL!1.08!11.03!HEYL;;chr3:69788576..69788648,+!p1@MITF!1.07!57.86!MITF;;chr18:19749517..19749531,+!p3@GATA6!1.07!19.37!GATA6;;chr12:80085061..80085119,-!p6@PAWR!1.07!17.41!PAWR;;chr3:25470156..25470227,+!p2@RARB!1.07!10.79!RARB;;chr3:24536253..24536328,-!p1@THRB!1.06!19.86!THRB;;chr18:19749386..19749404,+!p2@GATA6!1.06!14.95!GATA6;;chr3:114866084..114866118,-!p2@ZBTB20!1.04!36.53!ZBTB20;;chr7:44143978..44143989,+!p2@AEBP1!1.04!18.39!AEBP1;;chr1:10754477..10754517,-!p1@CASZ1!1.04!16.92!CASZ1;;chr5:158526459..158526481,-!p2@EBF1!1.04!13.48!EBF1;;chr3:12330560..12330579,+!p1@PPARG!1.04!11.52!PPARG;;chr5:158527104..158527135,-!p4@EBF1!1.03!9.81!EBF1;;chr9:114287433..114287513,+!p1@ZNF483!1.02!25.01!ZNF483;;chr9:16870710..16870763,-!p1@BNC2!1.02!16.42!BNC2;;chr20:51588873..51588953,+!p1@TSHZ2!1.02!12.50!TSHZ2;;chr1:201979743..201979762,+!p1@ELF3!1.02!9.56!ELF3;;chr7:27205136..27205164,-!p1@HOXA9!1.02!9.56!HOXA9;;chr2:176969228..176969260,+!p1@HOXD11!1.02!9.56!HOXD11;;chr3:187463179..187463201,-!p2@BCL6!1.01!38.98!BCL6;;chr19:46800289..46800327,+!p2@HIF3A!1.01!9.32!HIF3A;;chr15:37392616..37392638,-!p2@MEIS2!1.00!28.93!MEIS2;;chr2:208031943..208031978,-!p5@KLF7!1.00!12.01!KLF7;;chr3:126076242..126076257,-!p1@KLF15!1.00!11.28!KLF15;;chr3:18466787..18466839,-!p1@SATB1!0.99!40.45!SATB1;;chr22:41763452..41763466,+!p2@TEF!0.99!8.83!TEF;;chr10:28034739..28034756,-!p1@MKX!0.99!8.83!MKX;;chr8:55370487..55370503,+!p1@SOX17!0.99!8.83!SOX17;;chr9:14314131..14314147,-!p2@NFIB!0.98!48.54!NFIB;;chr12:24715376..24715432,-!p1@SOX5!0.98!11.03!SOX5;;chr15:37392724..37392757,-!p1@MEIS2!0.97!39.22!MEIS2;;chr2:100721328..100721348,-!p4@AFF3!0.97!8.34!AFF3;;chr3:141151009..141151033,+!p10@ZBTB38!0.97!8.34!ZBTB38;;chr7:114054917..114054938,+!p8@FOXP2!0.97!8.34!FOXP2;;chr8:77593474..77593612,+!p1@ZFHX4!0.96!35.06!ZFHX4;;chr15:37390850..37390909,-!p3@MEIS2!0.96!16.42!MEIS2;;chr1:61924375..61924380,+!p6@NFIA!0.96!11.52!NFIA;;chr20:50179368..50179392,-!p2@NFATC2!0.96!10.54!NFATC2;;chr7:27224842..27224872,-!p1@HOXA11!0.96!8.09!HOXA11;;chr19:16435625..16435682,+!p1@KLF2!0.95!261.08!KLF2;;chr3:141150883..141150961,+!p6@ZBTB38!0.95!7.84!ZBTB38;;chr10:63809106..63809127,+!p1@ARID5B!0.94!108.36!ARID5B;;chr2:66662249..66662267,+!p2@MEIS1!0.94!30.89!MEIS1;;chr17:1959369..1959388,+!p2@HIC1!0.94!21.08!HIC1;;chr1:170632285..170632309,+!p1@PRRX1!0.94!8.83!PRRX1;;chr1:212782094..212782109,+!p1@ATF3!0.93!211.81!ATF3;;chr2:97202480..97202499,+!p1@ARID5A!0.93!79.18!ARID5A;;chr16:79633894..79633954,-!p3@MAF!0.93!14.71!MAF;;chr7:28448965..28448994,+!p2@CREB5!0.91!26.23!CREB5;;chr20:2673383..2673441,+!p1@EBF4!0.91!11.52!EBF4;;chr8:25902876..25902936,-!p1@EBF2!0.91!7.11!EBF2;;chr12:80085120..80085156,-!p14@PAWR!0.91!7.11!PAWR;;chr12:26277956..26277980,-!p1@BHLHE41!0.90!26.23!BHLHE41;;chr1:8483756..8483809,-!p5@RERE!0.90!20.35!RERE;;chr15:61521417..61521460,-!p2@RORA!0.90!15.93!RORA;;chr10:8096631..8096660,+!p1@GATA3!0.90!8.58!GATA3;;chr18:42260840..42260860,+!p2@SETBP1!0.90!6.86!SETBP1;;chr7:15726296..15726315,-!p1@MEOX2!0.90!6.86!MEOX2;;chr8:93115274..93115323,-!p4@RUNX1T1!0.90!6.86!RUNX1T1;;chr17:59477233..59477263,+!p1@TBX2!0.89!22.06!TBX2;;chr18:42260059..42260132,+!p1@SETBP1!0.89!11.52!SETBP1;;chrX:107018969..107019024,-!p6@TSC22D3!0.89!9.56!TSC22D3;;chr8:106330696..106330719,+!p2@ZFPM2!0.89!8.83!ZFPM2;;chr14:75746722..75746777,+!p2@FOS!0.89!8.83!FOS;;chr14:75745523..75745537,+!p1@FOS!0.88!823.70!FOS;;chr6:35464817..35464894,-!p1@TEAD3!0.88!106.64!TEAD3;;chr5:92918919..92918942,+!p1@NR2F1!0.88!30.64!NR2F1;;chr2:166326200..166326216,+!p1@CSRNP3!0.88!9.81!CSRNP3;;chr19:57183114..57183145,-!p1@ZNF835!0.88!7.35!ZNF835;;chr4:149363494..149363543,-!p1@NR3C2!0.88!6.62!NR3C2;;chr5:88178983..88179012,-!p1@MEF2C!0.87!52.22!MEF2C;;chr6:28303901..28303944,-!p2@ZNF323!0.87!10.79!ZNF323;;chr2:66662895..66662907,+!p3@MEIS1!0.87!8.09!MEIS1;;chr9:14314522..14314556,-!p3@NFIB!0.86!15.20!NFIB;;chr3:126076264..126076305,-!p2@KLF15!0.86!8.83!KLF15;;chr9:128510454..128510469,+!p3@PBX3!0.86!8.34!PBX3;;chr10:31608127..31608156,+!p1@ZEB1!0.85!119.14!ZEB1;;chrX:70315688..70315709,+!p1@FOXO4!0.85!14.71!FOXO4;;chr15:80696703..80696754,+!p1@ARNT2!0.85!8.34!ARNT2;;chr2:145275162..145275202,-!p2@ZEB2!0.84!37.26!ZEB2;;chr3:71630980..71631110,-!p3@FOXP1!0.84!21.82!FOXP1;;chr9:102584241..102584261,+!p4@NR4A3!0.84!9.56!NR4A3;;chr3:169381420..169381535,-!p1@MECOM!0.84!7.11!MECOM;;chr7:27224795..27224840,-!p2@HOXA11!0.84!5.88!HOXA11;;chr8:10588010..10588030,-!p1@SOX7!0.84!5.88!SOX7;;chr11:47400078..47400106,-!p1@SPI1!0.84!5.88!SPI1;;chr18:42260920..42260951,+!p4@SETBP1!0.84!5.88!SETBP1;;chr19:22193731..22193751,-!p1@ZNF208!0.84!5.88!ZNF208;;chrX:106960285..106960299,-!p1@TSC22D3!0.83!165.48!TSC22D3;;chr10:63809013..63809041,+!p3@ARID5B!0.83!34.32!ARID5B;;chr19:38085768..38085821,+!p1@ZNF540!0.83!8.83!ZNF540;;chr9:73028814..73028895,-!p1@KLF9!0.82!59.33!KLF9;;chrX:106960180..106960197,-!p2@TSC22D3!0.82!22.55!TSC22D3;;chr18:77155922..77155939,+!p1@NFATC1!0.82!16.42!NFATC1;;chr7:19157043..19157088,-!p2@TWIST1!0.82!14.95!TWIST1;;chr3:25469724..25469773,+!p1@RARB!0.82!8.34!RARB;;chr7:44143997..44144008,+!p3@AEBP1!0.82!7.35!AEBP1;;chr4:57522166..57522260,-!p2@HOPX!0.82!6.62!HOPX;;chr5:158526756..158526797,-!p3@EBF1!0.82!5.64!EBF1;;chr11:8040739..8040815,+!p4@TUB!0.82!5.64!TUB;;chr19:6110474..6110551,-!p1@RFX2!0.81!35.55!RFX2;;chr15:37392593..37392607,-!p13@MEIS2!0.81!6.62!MEIS2;;chr11:34642612..34642646,+!p1@EHF!0.81!5.39!EHF;;chr7:27196267..27196311,-!p1@HOXA7!0.81!5.39!HOXA7;;chr2:157189180..157189290,-!p1@NR4A2!0.80!29.91!NR4A2;;chr11:12696002..12696022,+!p2@TEAD1!0.80!13.97!TEAD1;;chr1:61869835..61869848,+!p8@NFIA!0.80!7.11!NFIA;;chr8:48650715..48650735,-!p1@CEBPD!0.79!719.27!CEBPD;;chr17:59477197..59477212,+!p2@TBX2!0.79!9.32!TBX2;;chr8:99956662..99956684,+!p1@OSR2!0.79!8.34!OSR2;;chr15:37392703..37392717,-!p8@MEIS2!0.79!7.60!MEIS2;;chr2:113057415..113057477,+!p3@ZC3H6!0.79!6.86!ZC3H6;;chr3:69915385..69915438,+!p3@MITF!0.79!5.15!MITF;;chr4:57522598..57522664,-!p3@HOPX!0.79!5.15!HOPX;;chr19:54058073..54058088,+!p1@ZNF331!0.79!5.15!ZNF331;;chr10:31610110..31610159,+!p2@ZEB1!0.79!5.15!ZEB1;;chr18:19749504..19749515,+!p5@GATA6!0.79!5.15!GATA6;;chr5:174151612..174151633,+!p2@MSX2!0.79!5.15!MSX2;;chr8:93115584..93115642,-!p5@RUNX1T1!0.79!5.15!RUNX1T1;;chr5:92918894..92918912,+!p2@NR2F1!0.78!17.65!NR2F1;;chrX:101186981..101187030,-!p1@ZMAT1!0.78!17.65!ZMAT1;;chr17:38256877..38256900,-!p2@NR1D1!0.78!17.41!NR1D1;;chrX:66763856..66763896,+!p1@AR!0.78!7.60!AR;;chr6:138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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001135;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385
 |ffid_belonging_in_development=UBERON:0002532,UBERON:0006603,UBERON:0010316
 |fonse_cell_line=
@@ Line 41: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/smooth%2520muscle%252c%2520adult%252c%2520pool1.CNhs11755.10048-101G3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/smooth%2520muscle%252c%2520adult%252c%2520pool1.CNhs11755.10048-101G3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/smooth%2520muscle%252c%2520adult%252c%2520pool1.CNhs11755.10048-101G3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/smooth%2520muscle%252c%2520adult%252c%2520pool1.CNhs11755.10048-101G3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/smooth%2520muscle%252c%2520adult%252c%2520pool1.CNhs11755.10048-101G3.hg38.nobarcode.ctss.bed.gz
 |id=FF:10048-101G3
 |is_a=EFO:0002091;;FF:0010048
 |is_obsolete=
 |library_id=CNhs11755
-|library_id_phase_based=1:CNhs11755
+|library_id_phase_based=2:CNhs11755
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10048
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10048
 |name=smooth muscle, adult, pool1
 |namespace=FANTOM5
@@ Line 51: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11755,LSID820,release009,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10048-101G3;search_select_hide=table117:FF:10048-101G3
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FF:10048-101G3: Difference between revisions

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Latest revision as of 12:17, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0