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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005770
|DRA_sample_Accession=CAGE@SAMD00005770
|accession_numbers=CAGE;DRX007924;DRR008796;DRZ000221;DRZ001606
|accession_numbers=CAGE;DRX007924;DRR008796;DRZ000221;DRZ001606;DRZ011571;DRZ012956
|ancestors_in_anatomy_facet=UBERON:0000055,UBERON:0004111,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0001062,UBERON:0000480
|ancestors_in_anatomy_facet=UBERON:0000055,UBERON:0004111,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0001062,UBERON:0000480
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
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|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=1
|data_phase=2
|datafreeze_phase=1
|datafreeze_phase=2
|def=
|def=
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Line 40: Line 40:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/lymphangiectasia%2520cell%2520line%253aDS-1.CNhs11852.10727-110A7.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/lymphangiectasia%2520cell%2520line%253aDS-1.CNhs11852.10727-110A7.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/lymphangiectasia%2520cell%2520line%253aDS-1.CNhs11852.10727-110A7.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/lymphangiectasia%2520cell%2520line%253aDS-1.CNhs11852.10727-110A7.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/lymphangiectasia%2520cell%2520line%253aDS-1.CNhs11852.10727-110A7.hg38.nobarcode.ctss.bed.gz
|id=FF:10727-110A7
|id=FF:10727-110A7
|is_a=DOID:4;;EFO:0002091;;FF:0000003;;FF:0000210;;UBERON:0000055
|is_a=DOID:4;;EFO:0002091;;FF:0000003;;FF:0000210;;UBERON:0000055
|is_obsolete=
|is_obsolete=
|library_id=CNhs11852
|library_id=CNhs11852
|library_id_phase_based=1:CNhs11852
|library_id_phase_based=2:CNhs11852
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10727
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10727
|name=lymphangiectasia cell line:DS-1
|name=lymphangiectasia cell line:DS-1
|namespace=FANTOM5
|namespace=FANTOM5
Line 50: Line 59:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11852,LSID830,release010,COMPLETED
|profile_hcage=CNhs11852,LSID830,release010,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 89: Line 99:
|top_motifs=POU2F1..3:1.94087945873;AIRE:1.76029091116;TOPORS:1.11812828986;LMO2:1.03603216165;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.01936888845;MYB:1.0109278052;MYOD1:1.00303535579;PITX1..3:0.991150682828;POU5F1:0.977685903547;FOX{I1,J2}:0.971581331786;ZNF148:0.932107983991;NFY{A,B,C}:0.931003110333;AHR_ARNT_ARNT2:0.893188197413;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.877455334038;NKX6-1,2:0.862933230552;NR5A1,2:0.853329383848;E2F1..5:0.846692520098;VSX1,2:0.841152424811;HOX{A6,A7,B6,B7}:0.81362941719;BREu{core}:0.810303885818;PAX4:0.804376380388;PAX6:0.756371243795;ELF1,2,4:0.750958044239;GFI1:0.741434671214;YY1:0.725851223573;OCT4_SOX2{dimer}:0.721103502821;FOXP1:0.693800524663;FOXA2:0.675384343743;RUNX1..3:0.659623263234;HOX{A4,D4}:0.576782690146;NFKB1_REL_RELA:0.573738347655;RORA:0.572525405341;ATF6:0.539288327839;PAX8:0.521890816397;HOXA9_MEIS1:0.51093638957;ELK1,4_GABP{A,B1}:0.500306781912;NFIX:0.468395131906;CREB1:0.437824848245;IRF1,2:0.411958285567;NRF1:0.402339059916;ZNF143:0.393434622272;POU1F1:0.392656066082;bHLH_family:0.337239603488;ZEB1:0.332469926678;FOX{F1,F2,J1}:0.330151223459;GCM1,2:0.329813379066;DMAP1_NCOR{1,2}_SMARC:0.274533633835;GATA6:0.263309269747;PAX2:0.254094137309;SNAI1..3:0.249798376384;HES1:0.24356915923;FOXD3:0.220856987155;IKZF2:0.217142167398;ZBTB16:0.207461036119;SPI1:0.20652311388;FOXO1,3,4:0.206001257467;EVI1:0.2037127545;ATF5_CREB3:0.183138754727;FOXP3:0.173096107313;RFX2..5_RFXANK_RFXAP:0.168602182692;HNF4A_NR2F1,2:0.166219768605;TGIF1:0.163017088605;CRX:0.120287041964;FOXQ1:0.119823450533;MEF2{A,B,C,D}:0.107753184799;FOXN1:0.093350968708;AR:0.0885256109624;HIF1A:0.0861002129704;STAT5{A,B}:0.0282438412617;SOX5:0.0271213664073;ONECUT1,2:0.0229984656976;ETS1,2:0.0182222056371;PAX3,7:0.0100287040199;TP53:-0.00448113059414;SPIB:-0.00565975888206;CDX1,2,4:-0.0152312329509;HOX{A5,B5}:-0.0194809294153;IRF7:-0.037593556622;PBX1:-0.0498665096715;ZNF384:-0.0507943144386;NR6A1:-0.0523404746544;FOX{D1,D2}:-0.0674663164255;ZIC1..3:-0.181145230788;NFIL3:-0.194024574582;CEBPA,B_DDIT3:-0.197647055423;SOX{8,9,10}:-0.221050683759;POU3F1..4:-0.221174411011;PAX1,9:-0.252235876522;ATF4:-0.258208124127;FOSL2:-0.284562002436;HNF1A:-0.285278034252;LHX3,4:-0.303714598642;STAT2,4,6:-0.305964803046;MYFfamily:-0.333131027557;BPTF:-0.339802673247;MAFB:-0.356469841482;LEF1_TCF7_TCF7L1,2:-0.367428769162;UFEwm:-0.377100693879;NHLH1,2:-0.39261812707;SRF:-0.394696394662;NKX3-2:-0.407315424952;ARID5B:-0.407862644213;TLX2:-0.418001535784;TEF:-0.428435118813;NKX2-2,8:-0.43720000103;FOS_FOS{B,L1}_JUN{B,D}:-0.448554993697;CDC5L:-0.450561905603;NANOG{mouse}:-0.455138946048;HLF:-0.46617649163;TAL1_TCF{3,4,12}:-0.480317011886;EBF1:-0.482290822859;RFX1:-0.485385024974;ESR1:-0.49103690467;HMGA1,2:-0.503970244368;CUX2:-0.510267677178;ALX4:-0.530411003239;NFE2:-0.536727331294;ZFP161:-0.568149412358;SREBF1,2:-0.573336127749;PRRX1,2:-0.578518885242;SOX17:-0.58561845847;BACH2:-0.586789353344;DBP:-0.592775133317;REST:-0.597951292927;FOXL1:-0.601245346732;POU6F1:-0.608898995357;TFDP1:-0.624582173975;ALX1:-0.63187750302;TBP:-0.64238742235;ADNP_IRX_SIX_ZHX:-0.663972315976;GATA4:-0.670729977611;STAT1,3:-0.677961726944;JUN:-0.685687408833;HAND1,2:-0.69514913709;ESRRA:-0.70574345669;NFE2L2:-0.707796772232;EN1,2:-0.747224874724;SPZ1:-0.772987994305;ZNF423:-0.781850430661;XBP1:-0.78805914448;GTF2A1,2:-0.807685568006;RXRA_VDR{dimer}:-0.814779549593;T:-0.819127226446;HBP1_HMGB_SSRP1_UBTF:-0.839881247724;MYBL2:-0.848322593286;NANOG:-0.849794147386;SMAD1..7,9:-0.859166673185;NKX2-3_NKX2-5:-0.871906149125;RXR{A,B,G}:-0.87835870099;SP1:-0.881851908491;TFAP2B:-0.892311829478;IKZF1:-0.903967217593;TBX4,5:-0.917163048984;TFAP4:-0.923215133186;NKX3-1:-0.930525602393;NFE2L1:-0.933449995217;GZF1:-0.936904607769;FOXM1:-0.949475705697;HSF1,2:-0.967465121947;NKX2-1,4:-0.972024210413;PATZ1:-0.974241920285;ZBTB6:-0.988050718095;RREB1:-0.996251226352;GFI1B:-0.999476246997;EP300:-1.00008030732;ZNF238:-1.01935571755;NFATC1..3:-1.03460260684;PPARG:-1.03604918727;GTF2I:-1.04302755987;PDX1:-1.0612502411;TFAP2{A,C}:-1.06361890311;NR1H4:-1.07967554483;MED-1{core}:-1.09346889377;MZF1:-1.0970380773;HIC1:-1.13356192136;SOX2:-1.14240838165;XCPE1{core}:-1.14323126242;MAZ:-1.15754729202;PRDM1:-1.16511928999;MTF1:-1.17241388001;KLF4:-1.1939258306;TEAD1:-1.19893492658;ATF2:-1.24068564333;MTE{core}:-1.25384328874;RBPJ:-1.26247279264;HMX1:-1.34115692218;GLI1..3:-1.34935390795;PAX5:-1.38229470517;EGR1..3:-1.41243655362;TLX1..3_NFIC{dimer}:-1.4471779454;TFCP2:-1.63938643436;NR3C1:-1.90858019568
|top_motifs=POU2F1..3:1.94087945873;AIRE:1.76029091116;TOPORS:1.11812828986;LMO2:1.03603216165;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.01936888845;MYB:1.0109278052;MYOD1:1.00303535579;PITX1..3:0.991150682828;POU5F1:0.977685903547;FOX{I1,J2}:0.971581331786;ZNF148:0.932107983991;NFY{A,B,C}:0.931003110333;AHR_ARNT_ARNT2:0.893188197413;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.877455334038;NKX6-1,2:0.862933230552;NR5A1,2:0.853329383848;E2F1..5:0.846692520098;VSX1,2:0.841152424811;HOX{A6,A7,B6,B7}:0.81362941719;BREu{core}:0.810303885818;PAX4:0.804376380388;PAX6:0.756371243795;ELF1,2,4:0.750958044239;GFI1:0.741434671214;YY1:0.725851223573;OCT4_SOX2{dimer}:0.721103502821;FOXP1:0.693800524663;FOXA2:0.675384343743;RUNX1..3:0.659623263234;HOX{A4,D4}:0.576782690146;NFKB1_REL_RELA:0.573738347655;RORA:0.572525405341;ATF6:0.539288327839;PAX8:0.521890816397;HOXA9_MEIS1:0.51093638957;ELK1,4_GABP{A,B1}:0.500306781912;NFIX:0.468395131906;CREB1:0.437824848245;IRF1,2:0.411958285567;NRF1:0.402339059916;ZNF143:0.393434622272;POU1F1:0.392656066082;bHLH_family:0.337239603488;ZEB1:0.332469926678;FOX{F1,F2,J1}:0.330151223459;GCM1,2:0.329813379066;DMAP1_NCOR{1,2}_SMARC:0.274533633835;GATA6:0.263309269747;PAX2:0.254094137309;SNAI1..3:0.249798376384;HES1:0.24356915923;FOXD3:0.220856987155;IKZF2:0.217142167398;ZBTB16:0.207461036119;SPI1:0.20652311388;FOXO1,3,4:0.206001257467;EVI1:0.2037127545;ATF5_CREB3:0.183138754727;FOXP3:0.173096107313;RFX2..5_RFXANK_RFXAP:0.168602182692;HNF4A_NR2F1,2:0.166219768605;TGIF1:0.163017088605;CRX:0.120287041964;FOXQ1:0.119823450533;MEF2{A,B,C,D}:0.107753184799;FOXN1:0.093350968708;AR:0.0885256109624;HIF1A:0.0861002129704;STAT5{A,B}:0.0282438412617;SOX5:0.0271213664073;ONECUT1,2:0.0229984656976;ETS1,2:0.0182222056371;PAX3,7:0.0100287040199;TP53:-0.00448113059414;SPIB:-0.00565975888206;CDX1,2,4:-0.0152312329509;HOX{A5,B5}:-0.0194809294153;IRF7:-0.037593556622;PBX1:-0.0498665096715;ZNF384:-0.0507943144386;NR6A1:-0.0523404746544;FOX{D1,D2}:-0.0674663164255;ZIC1..3:-0.181145230788;NFIL3:-0.194024574582;CEBPA,B_DDIT3:-0.197647055423;SOX{8,9,10}:-0.221050683759;POU3F1..4:-0.221174411011;PAX1,9:-0.252235876522;ATF4:-0.258208124127;FOSL2:-0.284562002436;HNF1A:-0.285278034252;LHX3,4:-0.303714598642;STAT2,4,6:-0.305964803046;MYFfamily:-0.333131027557;BPTF:-0.339802673247;MAFB:-0.356469841482;LEF1_TCF7_TCF7L1,2:-0.367428769162;UFEwm:-0.377100693879;NHLH1,2:-0.39261812707;SRF:-0.394696394662;NKX3-2:-0.407315424952;ARID5B:-0.407862644213;TLX2:-0.418001535784;TEF:-0.428435118813;NKX2-2,8:-0.43720000103;FOS_FOS{B,L1}_JUN{B,D}:-0.448554993697;CDC5L:-0.450561905603;NANOG{mouse}:-0.455138946048;HLF:-0.46617649163;TAL1_TCF{3,4,12}:-0.480317011886;EBF1:-0.482290822859;RFX1:-0.485385024974;ESR1:-0.49103690467;HMGA1,2:-0.503970244368;CUX2:-0.510267677178;ALX4:-0.530411003239;NFE2:-0.536727331294;ZFP161:-0.568149412358;SREBF1,2:-0.573336127749;PRRX1,2:-0.578518885242;SOX17:-0.58561845847;BACH2:-0.586789353344;DBP:-0.592775133317;REST:-0.597951292927;FOXL1:-0.601245346732;POU6F1:-0.608898995357;TFDP1:-0.624582173975;ALX1:-0.63187750302;TBP:-0.64238742235;ADNP_IRX_SIX_ZHX:-0.663972315976;GATA4:-0.670729977611;STAT1,3:-0.677961726944;JUN:-0.685687408833;HAND1,2:-0.69514913709;ESRRA:-0.70574345669;NFE2L2:-0.707796772232;EN1,2:-0.747224874724;SPZ1:-0.772987994305;ZNF423:-0.781850430661;XBP1:-0.78805914448;GTF2A1,2:-0.807685568006;RXRA_VDR{dimer}:-0.814779549593;T:-0.819127226446;HBP1_HMGB_SSRP1_UBTF:-0.839881247724;MYBL2:-0.848322593286;NANOG:-0.849794147386;SMAD1..7,9:-0.859166673185;NKX2-3_NKX2-5:-0.871906149125;RXR{A,B,G}:-0.87835870099;SP1:-0.881851908491;TFAP2B:-0.892311829478;IKZF1:-0.903967217593;TBX4,5:-0.917163048984;TFAP4:-0.923215133186;NKX3-1:-0.930525602393;NFE2L1:-0.933449995217;GZF1:-0.936904607769;FOXM1:-0.949475705697;HSF1,2:-0.967465121947;NKX2-1,4:-0.972024210413;PATZ1:-0.974241920285;ZBTB6:-0.988050718095;RREB1:-0.996251226352;GFI1B:-0.999476246997;EP300:-1.00008030732;ZNF238:-1.01935571755;NFATC1..3:-1.03460260684;PPARG:-1.03604918727;GTF2I:-1.04302755987;PDX1:-1.0612502411;TFAP2{A,C}:-1.06361890311;NR1H4:-1.07967554483;MED-1{core}:-1.09346889377;MZF1:-1.0970380773;HIC1:-1.13356192136;SOX2:-1.14240838165;XCPE1{core}:-1.14323126242;MAZ:-1.15754729202;PRDM1:-1.16511928999;MTF1:-1.17241388001;KLF4:-1.1939258306;TEAD1:-1.19893492658;ATF2:-1.24068564333;MTE{core}:-1.25384328874;RBPJ:-1.26247279264;HMX1:-1.34115692218;GLI1..3:-1.34935390795;PAX5:-1.38229470517;EGR1..3:-1.41243655362;TLX1..3_NFIC{dimer}:-1.4471779454;TFCP2:-1.63938643436;NR3C1:-1.90858019568
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10727-110A7;search_select_hide=table117:FF:10727-110A7
}}
}}

Latest revision as of 15:02, 3 June 2020

Name:lymphangiectasia cell line:DS-1
Species:Human (Homo sapiens)
Library ID:CNhs11852
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexfemale
ageNA
cell typeb cell
cell lineDS-1
companyATCC
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005770
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11852 CAGE DRX007924 DRR008796
Accession ID Hg19

Library idBAMCTSS
CNhs11852 DRZ000221 DRZ001606
Accession ID Hg38

Library idBAMCTSS
CNhs11852 DRZ011571 DRZ012956
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
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C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11852

Jaspar motifP-value
MA0002.20.102
MA0003.10.476
MA0004.10.13
MA0006.10.492
MA0007.10.566
MA0009.10.866
MA0014.10.417
MA0017.10.121
MA0018.20.945
MA0019.10.33
MA0024.10.00102
MA0025.10.164
MA0027.10.216
MA0028.12.69799e-4
MA0029.10.216
MA0030.10.252
MA0031.10.144
MA0035.20.046
MA0038.10.0424
MA0039.20.516
MA0040.10.237
MA0041.10.227
MA0042.10.46
MA0043.10.605
MA0046.10.416
MA0047.20.38
MA0048.10.814
MA0050.10.00429
MA0051.10.0117
MA0052.10.444
MA0055.10.126
MA0057.10.946
MA0058.10.109
MA0059.10.00229
MA0060.11.05614e-7
MA0061.10.00124
MA0062.22.29705e-5
MA0065.20.0203
MA0066.10.821
MA0067.10.421
MA0068.10.297
MA0069.10.799
MA0070.10.859
MA0071.10.17
MA0072.10.0182
MA0073.10.67
MA0074.10.484
MA0076.13.66054e-4
MA0077.10.613
MA0078.10.102
MA0079.20.708
MA0080.20.0836
MA0081.10.393
MA0083.10.744
MA0084.10.133
MA0087.10.232
MA0088.10.00587
MA0090.10.00119
MA0091.10.716
MA0092.10.169
MA0093.10.132
MA0099.20.00202
MA0100.10.219
MA0101.10.0139
MA0102.20.478
MA0103.10.0257
MA0104.20.00101
MA0105.11.12396e-5
MA0106.10.167
MA0107.10.0174
MA0108.20.00881
MA0111.10.137
MA0112.20.216
MA0113.10.655
MA0114.10.0385
MA0115.10.0694
MA0116.10.00221
MA0117.10.83
MA0119.10.894
MA0122.10.653
MA0124.10.546
MA0125.10.894
MA0131.10.609
MA0135.10.638
MA0136.10.0162
MA0137.20.191
MA0138.20.72
MA0139.10.706
MA0140.10.00505
MA0141.10.103
MA0142.10.102
MA0143.10.33
MA0144.10.303
MA0145.10.517
MA0146.10.0223
MA0147.12.97279e-4
MA0148.10.664
MA0149.10.0487
MA0150.10.771
MA0152.10.292
MA0153.10.0103
MA0154.10.481
MA0155.10.513
MA0156.10.0281
MA0157.19.27965e-4
MA0159.10.944
MA0160.10.0617
MA0162.10.85
MA0163.16.74866e-7
MA0164.10.601
MA0258.10.111
MA0259.10.0327



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11852

Novel motifP-value
10.0351
100.0143
1000.108
1010.405
1020.173
1030.193
1040.743
1050.536
1060.778
1070.225
1080.213
1090.0811
110.0841
1100.352
1110.0644
1120.622
1130.666
1140.527
1150.565
1160.277
1170.00589
1180.503
1190.304
120.719
1200.408
1210.853
1220.632
1230.00135
1240.0408
1250.241
1260.36
1270.693
1280.392
1290.389
130.138
1300.295
1310.51
1320.834
1330.383
1340.598
1350.815
1360.162
1370.778
1380.25
1390.478
140.921
1400.436
1410.0642
1420.708
1430.0548
1440.685
1450.283
1460.792
1470.167
1480.535
1490.833
150.298
1500.538
1510.982
1520.959
1530.903
1540.519
1550.0657
1560.151
1570.963
1580.915
1590.13
160.875
1600.104
1610.852
1620.731
1630.92
1640.575
1650.845
1660.778
1670.135
1680.971
1690.294
170.751
180.861
190.707
20.755
200.216
210.352
220.924
230.147
240.372
250.127
260.0918
270.845
280.398
290.0246
30.169
300.0829
310.923
320.162
330.844
340.752
350.239
360.0357
370.135
380.595
390.723
40.031
400.0871
410.843
420.207
430.199
440.0852
450.728
460.265
470.0435
480.0456
490.00417
50.715
500.902
510.642
520.273
530.0752
540.94
550.386
560.401
570.222
580.31
590.631
60.45
600.448
610.0669
620.383
630.485
640.265
650.767
661.03717e-5
670.374
680.0872
690.491
70.11
700.36
710.0544
720.282
730.371
740.772
759.9811e-4
760.401
770.572
780.239
790.47
80.322
800.428
810.232
820.578
830.554
840.311
850.732
860.126
870.0282
880.845
890.583
90.482
900.0398
910.0759
920.959
930.598
940.376
950.00775
960.342
970.0721
980.427
990.682



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11852


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

DOID: Disease
4 (disease)

UBERON: Anatomy
0000055 (vessel)
0004111 (anatomical conduit)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0001062 (anatomical entity)
0000480 (anatomical group)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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