FF:10059-101H5: Difference between revisions

Latest revision as of 12:18, 3 June 2020

Name:	tongue, fetal, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs11768
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	tongue
dev stage	32 weeks fetus
sex	female
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Biochain
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	B301061
catalog number	Cat:RtHFN: Tongue
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005093

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11768		CAGE		DRX008751		DRR009623

Accession ID Hg19

Library id		BAM		CTSS
CNhs11768		DRZ001048		DRZ002433

Accession ID Hg38

Library id		BAM		CTSS
CNhs11768		DRZ012398		DRZ013783

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.404
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.121
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0.611
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.393
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	1.521
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0416
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.452
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0.628
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.24
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0.341
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.00805
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0.307
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0441
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.375
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	1.224
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0762
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.0383
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.0933
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.226
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0.128
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.375
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0.128
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.128
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.246
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.128
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.375
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.662
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.128
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.182
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0.811
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	1.146
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.531
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0.573
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0.226
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.0496
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0.531
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11768

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00532
MA0003.1	MA0003.1	0.147
MA0004.1	MA0004.1	0.0018
MA0006.1	MA0006.1	0.147
MA0007.1	MA0007.1	0.157
MA0009.1	MA0009.1	0.121
MA0014.1	MA0014.1	0.804
MA0017.1	MA0017.1	0.741
MA0018.2	MA0018.2	0.047
MA0019.1	MA0019.1	0.0998
MA0024.1	MA0024.1	0.0808
MA0025.1	MA0025.1	0.321
MA0027.1	MA0027.1	0.879
MA0028.1	MA0028.1	2.48438e-7
MA0029.1	MA0029.1	0.583
MA0030.1	MA0030.1	0.482
MA0031.1	MA0031.1	0.0857
MA0035.2	MA0035.2	0.0856
MA0038.1	MA0038.1	0.122
MA0039.2	MA0039.2	0.333
MA0040.1	MA0040.1	1
MA0041.1	MA0041.1	0.721
MA0042.1	MA0042.1	0.671
MA0043.1	MA0043.1	0.00136
MA0046.1	MA0046.1	0.00416
MA0047.2	MA0047.2	0.48
MA0048.1	MA0048.1	5.86756e-4
MA0050.1	MA0050.1	7.54576e-5
MA0051.1	MA0051.1	4.56068e-4
MA0052.1	MA0052.1	6.14219e-28
MA0055.1	MA0055.1	0.00207
MA0057.1	MA0057.1	0.469
MA0058.1	MA0058.1	6.62782e-5
MA0059.1	MA0059.1	0.00233
MA0060.1	MA0060.1	0.00162
MA0061.1	MA0061.1	1.57204e-5
MA0062.2	MA0062.2	5.22692e-16
MA0065.2	MA0065.2	0.622
MA0066.1	MA0066.1	0.296
MA0067.1	MA0067.1	0.0637
MA0068.1	MA0068.1	0.0975
MA0069.1	MA0069.1	0.829
MA0070.1	MA0070.1	0.662
MA0071.1	MA0071.1	0.986
MA0072.1	MA0072.1	0.552
MA0073.1	MA0073.1	0.279
MA0074.1	MA0074.1	0.736
MA0076.1	MA0076.1	3.86243e-9
MA0077.1	MA0077.1	0.705
MA0078.1	MA0078.1	0.336
MA0079.2	MA0079.2	0.698
MA0080.2	MA0080.2	2.00174e-8
MA0081.1	MA0081.1	8.11094e-4
MA0083.1	MA0083.1	0.0309
MA0084.1	MA0084.1	0.241
MA0087.1	MA0087.1	0.0568
MA0088.1	MA0088.1	0.0609
MA0090.1	MA0090.1	0.43
MA0091.1	MA0091.1	0.0119
MA0092.1	MA0092.1	0.472
MA0093.1	MA0093.1	0.00129
MA0099.2	MA0099.2	6.36756e-13
MA0100.1	MA0100.1	0.0107
MA0101.1	MA0101.1	6.83668e-5
MA0102.2	MA0102.2	8.26436e-4
MA0103.1	MA0103.1	0.0502
MA0104.2	MA0104.2	3.45625e-5
MA0105.1	MA0105.1	0.00154
MA0106.1	MA0106.1	0.101
MA0107.1	MA0107.1	1.47851e-4
MA0108.2	MA0108.2	9.55581e-19
MA0111.1	MA0111.1	0.436
MA0112.2	MA0112.2	0.00205
MA0113.1	MA0113.1	0.0536
MA0114.1	MA0114.1	0.774
MA0115.1	MA0115.1	0.692
MA0116.1	MA0116.1	0.119
MA0117.1	MA0117.1	0.395
MA0119.1	MA0119.1	0.3
MA0122.1	MA0122.1	0.225
MA0124.1	MA0124.1	0.396
MA0125.1	MA0125.1	0.688
MA0131.1	MA0131.1	0.12
MA0135.1	MA0135.1	0.816
MA0136.1	MA0136.1	8.89097e-12
MA0137.2	MA0137.2	0.056
MA0138.2	MA0138.2	0.194
MA0139.1	MA0139.1	0.0475
MA0140.1	MA0140.1	0.0359
MA0141.1	MA0141.1	0.427
MA0142.1	MA0142.1	0.0143
MA0143.1	MA0143.1	0.319
MA0144.1	MA0144.1	0.196
MA0145.1	MA0145.1	0.0358
MA0146.1	MA0146.1	0.962
MA0147.1	MA0147.1	5.95476e-5
MA0148.1	MA0148.1	0.564
MA0149.1	MA0149.1	0.0987
MA0150.1	MA0150.1	3.08729e-7
MA0152.1	MA0152.1	0.329
MA0153.1	MA0153.1	0.813
MA0154.1	MA0154.1	0.838
MA0155.1	MA0155.1	0.0856
MA0156.1	MA0156.1	1.91348e-15
MA0157.1	MA0157.1	0.0335
MA0159.1	MA0159.1	0.196
MA0160.1	MA0160.1	0.88
MA0162.1	MA0162.1	0.0906
MA0163.1	MA0163.1	0.13
MA0164.1	MA0164.1	0.726
MA0258.1	MA0258.1	0.0236
MA0259.1	MA0259.1	0.0587

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11768

Novel motif	Logo	P-value
1	1	0.804
10	10	0.158
100	100	0.358
101	101	0.781
102	102	0.703
103	103	0.661
104	104	0.749
105	105	0.523
106	106	0.354
107	107	0.0193
108	108	0.129
109	109	0.302
11	11	0.951
110	110	0.904
111	111	0.649
112	112	0.273
113	113	7.79414e-4
114	114	0.652
115	115	0.0231
116	116	0.146
117	117	0.0896
118	118	0.0782
119	119	0.278
12	12	0.763
120	120	0.55
121	121	0.99
122	122	0.0216
123	123	0.0582
124	124	0.0276
125	125	0.624
126	126	0.684
127	127	0.824
128	128	0.371
129	129	0.718
13	13	0.913
130	130	0.544
131	131	0.51
132	132	0.0408
133	133	0.147
134	134	0.146
135	135	0.263
136	136	0.663
137	137	0.356
138	138	0.542
139	139	0.513
14	14	0.894
140	140	0.387
141	141	0.892
142	142	0.786
143	143	0.0351
144	144	0.875
145	145	0.684
146	146	0.802
147	147	0.00712
148	148	0.366
149	149	0.0304
15	15	0.236
150	150	0.833
151	151	0.562
152	152	0.128
153	153	0.327
154	154	0.77
155	155	0.383
156	156	0.561
157	157	0.495
158	158	0.364
159	159	0.616
16	16	0.213
160	160	0.439
161	161	0.488
162	162	0.238
163	163	0.159
164	164	0.235
165	165	0.0637
166	166	0.131
167	167	0.143
168	168	0.859
169	169	0.0455
17	17	0.98
18	18	0.306
19	19	0.00933
2	2	0.0861
20	20	0.0101
21	21	0.467
22	22	0.231
23	23	0.324
24	24	0.0648
25	25	0.892
26	26	0.624
27	27	0.855
28	28	0.622
29	29	0.14
3	3	0.637
30	30	0.00311
31	31	0.403
32	32	6.18702e-4
33	33	0.787
34	34	0.723
35	35	0.714
36	36	0.0581
37	37	0.95
38	38	0.861
39	39	0.269
4	4	0.774
40	40	0.406
41	41	0.352
42	42	0.3
43	43	0.479
44	44	0.00379
45	45	0.0942
46	46	0.883
47	47	0.52
48	48	0.627
49	49	0.529
5	5	0.573
50	50	0.804
51	51	0.89
52	52	0.193
53	53	0.802
54	54	0.668
55	55	0.326
56	56	0.579
57	57	0.717
58	58	0.938
59	59	0.372
6	6	0.924
60	60	0.223
61	61	0.68
62	62	0.767
63	63	0.39
64	64	0.596
65	65	0.495
66	66	0.0283
67	67	0.152
68	68	0.178
69	69	0.277
7	7	0.608
70	70	0.938
71	71	0.25
72	72	0.605
73	73	0.569
74	74	0.145
75	75	0.444
76	76	0.0648
77	77	0.0466
78	78	0.224
79	79	0.162
8	8	0.915
80	80	0.336
81	81	0.168
82	82	0.539
83	83	0.926
84	84	0.366
85	85	0.00209
86	86	0.776
87	87	0.137
88	88	0.507
89	89	0.0317
9	9	0.861
90	90	0.0966
91	91	0.217
92	92	0.511
93	93	0.883
94	94	0.127
95	95	0.0953
96	96	0.914
97	97	0.621
98	98	0.955
99	99	0.0189

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11768

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010059 human tongue - fetal sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0001723 (tongue)
0000033 (head)
0000479 (tissue)
0001007 (digestive system)
0004121 (ectoderm-derived structure)
0004119 (endoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0001444 (subdivision of head)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000020 (sense organ)
0001032 (sensory system)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000165 (mouth)
0004456 (entire sense organ system)
0001033 (gustatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)
0010059 (human tongue - fetal sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
 |DRA_sample_Accession=CAGE@SAMD00005093
-|accession_numbers=CAGE;DRX008751;DRR009623;DRZ001048;DRZ002433
+|accession_numbers=CAGE;DRX008751;DRR009623;DRZ001048;DRZ002433;DRZ012398;DRZ013783
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0001723,UBERON:0000033,UBERON:0000479,UBERON:0001007,UBERON:0004121,UBERON:0004119,UBERON:0010314,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0001444,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000020,UBERON:0001032,UBERON:0010317,UBERON:0001555,UBERON:0000153,UBERON:0007811,UBERON:0000165,UBERON:0004456,UBERON:0001033
 |ancestors_in_cell_lineage_facet=
@@ Line 13: / Line 13: @@
 |def=
 |expression_enrichment_score=chr4:57547454..57547469,-!p1@HOPX!2.65!449.69!HOPX;;chr12:52437488..52437507,+!p2@NR4A1!2.27!185.49!NR4A1;;chr15:42749722..42749739,-!p2@ZFP106!2.17!253.94!ZFP106;;chr5:134369879..134369898,-!p2@PITX1!2.04!109.17!PITX1;;chr11:34642612..34642646,+!p1@EHF!2.03!106.43!EHF;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.95!88.64!PEG3;;chr1:203055129..203055147,-!p1@MYOG!1.94!85.56!MYOG;;chr5:172662197..172662216,-!p1@NKX2-5!1.89!76.66!NKX2-5;;chr17:80797886..80797906,-!p1@ZNF750!1.80!61.60!ZNF750;;chr5:134369905..134369972,-!p1@PITX1!1.72!77.69!PITX1;;chr11:129245526..129245553,+!p1@BARX2!1.70!49.62!BARX2;;chr20:62680984..62680999,-!p1@SOX18!1.68!60.92!SOX18;;chr14:37131058..37131139,+!p1@PAX9!1.64!43.12!PAX9;;chr1:201979743..201979762,+!p1@ELF3!1.64!42.44!ELF3;;chr12:81101404..81101421,+!p1@MYF6!1.61!39.36!MYF6;;chr8:10588010..10588030,-!p1@SOX7!1.57!35.93!SOX7;;chr12:81101472..81101483,+!p2@MYF6!1.55!34.57!MYF6;;chr19:2867325..2867348,+!p1@ZNF556!1.51!31.49!ZNF556;;chr22:19748231..19748317,+!p1@TBX1!1.46!27.72!TBX1;;chr1:40105299..40105326,-!p1@HEYL!1.45!27.04!HEYL;;chr7:73038839..73038862,-!p1@MLXIPL!1.44!26.69!MLXIPL;;chr19:46801639..46801699,+!p1@HIF3A!1.40!24.30!HIF3A;;chr1:201979703..201979721,+!p2@ELF3!1.40!24.30!ELF3;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.40!24.30!ZBED1;;chr1:151804244..151804310,-!p1@RORC!1.39!23.61!RORC;;chr10:131762504..131762555,-!p1@EBF3!1.39!23.27!EBF3;;chr16:79634624..79634642,-!p1@MAF!1.37!85.90!MAF;;chr8:25902876..25902936,-!p1@EBF2!1.37!22.59!EBF2;;chr8:55370487..55370503,+!p1@SOX17!1.37!22.25!SOX17;;chr21:39870339..39870443,-!p1@ERG!1.37!22.25!ERG;;chr11:125034640..125034655,+!p1@PKNOX2!1.36!21.90!PKNOX2;;chr11:34535297..34535317,-!p1@ELF5!1.34!20.88!ELF5;;chr9:100615499..100615519,+!p1@FOXE1!1.33!20.53!FOXE1;;chr12:81110684..81110700,+!p1@MYF5!1.33!20.19!MYF5;;chr2:122042770..122042785,-!p1@TFCP2L1!1.33!20.19!TFCP2L1;;chr4:111544219..111544240,-!p1@PITX2!1.33!20.19!PITX2;;chr14:61116183..61116208,-!p1@SIX1!1.31!72.90!SIX1;;chr9:102584159..102584174,+!p2@NR4A3!1.31!34.91!NR4A3;;chr11:129245736..129245758,+!p2@BARX2!1.31!19.51!BARX2;;chr1:209979467..209979494,-!p1@IRF6!1.30!21.22!IRF6;;chr1:24645832..24645853,+!p1@GRHL3!1.30!18.82!GRHL3;;chr3:189507432..189507459,+!p1@TP63!1.29!18.48!TP63;;chr1:170699295..170699343,+!p35@PRRX1!1.28!18.14!PRRX1;;chr7:15726296..15726315,-!p1@MEOX2!1.28!18.14!MEOX2;;chr1:24645921..24645973,+!p2@GRHL3!1.27!17.80!GRHL3;;chr2:242556880..242556899,-!p5@THAP4!1.27!17.80!THAP4;;chr17:7493405..7493419,-!p1@SOX15!1.27!17.45!SOX15;;chr1:170633348..170633399,+!p2@PRRX1!1.26!23.61!PRRX1;;chr1:170632285..170632309,+!p1@PRRX1!1.26!19.51!PRRX1;;chr2:19558373..19558392,-!p1@OSR1!1.24!44.49!OSR1;;chr17:1959369..1959388,+!p2@HIC1!1.24!43.12!HIC1;;chr17:48072574..48072597,-!p1@DLX3!1.24!16.43!DLX3;;chr12:52445218..52445237,+!p1@NR4A1!1.23!197.13!NR4A1;;chr6:1312325..1312340,+!p1@FOXQ1!1.21!24.98!FOXQ1;;chr17:53342311..53342400,+!p1@HLF!1.21!17.45!HLF;;chr15:101069113..101069169,-!p1@CERS3!1.21!15.40!CERS3;;chr18:45663490..45663528,-!p2@ZBTB7C!1.20!14.72!ZBTB7C;;chr6:144329384..144329405,-!p1@PLAGL1!1.18!162.90!PLAGL1;;chr11:113930425..113930471,+!p1@ZBTB16!1.18!20.19!ZBTB16;;chr4:57522166..57522260,-!p2@HOPX!1.18!16.43!HOPX;;chr1:170633262..170633285,+!p3@PRRX1!1.18!16.08!PRRX1;;chr22:29196433..29196445,-!p4@XBP1!1.18!15.74!XBP1;;chr2:10091815..10091864,+!p1@GRHL1!1.17!18.14!GRHL1;;chr3:181429704..181429722,+!p1@SOX2!1.17!13.69!SOX2;;chr4:57522598..57522664,-!p3@HOPX!1.17!13.69!HOPX;;chr1:214161272..214161322,+!p1@PROX1!1.16!18.82!PROX1;;chr11:12766597..12766618,+!p11@TEAD1!1.16!13.35!TEAD1;;chr22:38380543..38380569,-!p1@SOX10!1.16!13.35!SOX10;;chr13:72441315..72441454,-!p1@DACH1!1.15!26.35!DACH1;;chr12:54785074..54785122,-!p2@ZNF385A!1.14!19.51!ZNF385A;;chr19:46800289..46800327,+!p2@HIF3A!1.14!12.66!HIF3A;;chr16:30389131..30389144,+!p16@ZNF48!1.14!12.66!ZNF48;;chr5:137804484..137804498,+!p2@EGR1!1.12!48.94!EGR1;;chr16:79634595..79634620,-!p2@MAF!1.12!22.25!MAF;;chr17:41739283..41739297,-!p1@MEOX1!1.12!12.32!MEOX1;;chr21:38071430..38071456,+!p1@SIM2!1.12!12.32!SIM2;;chr20:590944..590960,-!p1@TCF15!1.11!11.98!TCF15;;chr5:158526917..158526932,-!p1@EBF1!1.10!29.09!EBF1;;chr8:144512897..144512903,-!p1@MAFA!1.10!11.64!MAFA;;chr14:73360799..73360817,-!p1@DPF3!1.09!39.01!DPF3;;chr6:34524093..34524135,-!p1@SPDEF!1.09!11.29!SPDEF;;chr9:1050331..1050363,+!p1@DMRT2!1.09!11.29!DMRT2;;chr11:17741111..17741124,+!p1@MYOD1!1.08!10.95!MYOD1;;chr11:65554528..65554546,+!p1@OVOL1!1.08!10.95!OVOL1;;chr16:30389152..30389161,+!p23@ZNF48!1.08!10.95!ZNF48;;chr20:55204351..55204377,+!p1@TFAP2C!1.05!13.00!TFAP2C;;chr7:15726243..15726293,-!p2@MEOX2!1.05!10.27!MEOX2;;chr6:1389789..1389821,+!p1@FOXF2!1.04!13.69!FOXF2;;chr4:111558135..111558198,-!p2@PITX2!1.04!9.92!PITX2;;chr10:64576105..64576133,-!p1@EGR2!1.03!20.19!EGR2;;chr4:174451370..174451387,-!p1@HAND2!1.02!9.58!HAND2;;chr17:6926362..6926377,+!p1@BCL6B!1.02!9.58!BCL6B;;chr20:30433396..30433414,-!p1@FOXS1!1.02!9.58!FOXS1;;chr17:46126136..46126152,+!p1@NFE2L1!1.01!481.18!NFE2L1;;chr2:145277882..145277967,-!p3@ZEB2!1.01!16.08!ZEB2;;chr1:170632959..170632987,+!p4@PRRX1!1.01!10.27!PRRX1;;chr1:216978721..216978728,-!p13@ESRRG!1.01!9.24!ESRRG;;chr11:128457446..128457461,-!p4@ETS1!1.01!9.24!ETS1;;chr16:79633894..79633954,-!p3@MAF!1.00!17.45!MAF;;chr15:57511609..57511651,+!p2@TCF12!1.00!15.40!TCF12;;chr13:73633131..73633149,+!p1@KLF5!0.98!94.11!KLF5;;chr2:70142232..70142251,+!p1@MXD1!0.98!49.62!MXD1;;chr2:60780753..60780800,-!p1@BCL11A!0.98!43.12!BCL11A;;chr3:111314186..111314204,-!p1@ZBED2!0.98!8.56!ZBED2;;chr1:61924375..61924380,+!p6@NFIA!0.97!11.98!NFIA;;chr8:106330656..106330684,+!p1@ZFPM2!0.96!21.90!ZFPM2;;chr20:50179368..50179392,-!p2@NFATC2!0.96!10.61!NFATC2;;chr18:53068911..53068935,-!p4@TCF4!0.96!9.24!TCF4;;chr5:158527104..158527135,-!p4@EBF1!0.96!8.21!EBF1;;chr15:96873984..96873999,+!p3@NR2F2!0.95!59.89!NR2F2;;chr3:69788576..69788648,+!p1@MITF!0.95!43.81!MITF;;chr4:57522674..57522699,-!p5@HOPX!0.95!7.87!HOPX;;chr7:100065686..100065701,-!p2@TSC22D4!0.95!7.87!TSC22D4;;chr9:14313641..14313652,-!p13@NFIB!0.95!7.87!NFIB;;chr19:33793430..33793447,-!p1@CEBPA!0.94!33.88!CEBPA;;chr18:22932080..22932170,-!p1@ZNF521!0.94!33.54!ZNF521;;chr6:144289132..144289134,-!p3@PLAGL1!0.94!18.48!PLAGL1;;chr12:54785054..54785072,-!p4@ZNF385A!0.94!8.90!ZNF385A;;chr7:150945754..150945789,-!p2@SMARCD3!0.93!23.96!SMARCD3;;chr1:41827095..41827155,+!p1@FOXO6!0.93!10.27!FOXO6;;chr11:17741084..17741094,+!p3@MYOD1!0.93!7.53!MYOD1;;chr11:34645791..34645836,+!p3@EHF!0.93!7.53!EHF;;chr16:85932760..85932775,+!p1@IRF8!0.93!7.53!IRF8;;chr18:77155922..77155939,+!p1@NFATC1!0.92!20.88!NFATC1;;chr18:52989031..52989079,-!p2@TCF4!0.92!17.80!TCF4;;chr7:150946015..150946070,-!p3@SMARCD3!0.92!16.43!SMARCD3;;chr15:42743341..42743377,-!p3@ZFP106!0.92!12.66!ZFP106;;chr12:96588368..96588394,+!p3@ELK3!0.91!19.85!ELK3;;chr1:23696308..23696339,-!p2@ZNF436!0.91!15.74!ZNF436;;chr12:54779511..54779577,-!p5@ZNF385A!0.91!7.19!ZNF385A;;chr19:37464453..37464515,+!p4@ZNF568!0.91!7.19!ZNF568;;chr14:75745523..75745537,+!p1@FOS!0.89!854.21!FOS;;chr12:53625966..53626012,-!p2@RARG!0.89!18.48!RARG;;chr11:34642656..34642667,+!p2@EHF!0.89!6.84!EHF;;chr5:71803177..71803255,-!p1@ZNF366!0.89!6.84!ZNF366;;chr8:102504651..102504683,+!p1@GRHL2!0.89!6.84!GRHL2;;chr2:60781201..60781258,-!p3@BCL11A!0.89!6.84!BCL11A;;chr3:128212033..128212051,-!p1@GATA2!0.89!6.84!GATA2;;chr3:114343768..114343822,-!p1@ZBTB20!0.88!30.12!ZBTB20;;chr22:29196492..29196503,-!p3@XBP1!0.88!10.61!XBP1;;chr1:209979411..209979433,-!p2@IRF6!0.88!6.50!IRF6;;chr15:42749346..42749359,-!p7@ZFP106!0.87!7.53!ZFP106;;chr2:157189180..157189290,-!p1@NR4A2!0.85!33.88!NR4A2;;chr12:10865870..10865888,-!p6@CSDA!0.85!8.56!CSDA;;chr13:72441074..72441172,-!p2@DACH1!0.85!6.16!DACH1;;chr16:1031762..1031781,+!p1@SOX8!0.85!6.16!SOX8;;chr9:124991204..124991246,-!p1@LHX6!0.85!6.16!LHX6;;chr1:18958008..18958023,+!p2@PAX7!0.85!6.16!PAX7;;chr1:2461692..2461710,-!p1@HES5!0.85!6.16!HES5;;chr5:88119715..88119757,-!p11@MEF2C!0.85!6.16!MEF2C;;chr6:34524049..34524089,-!p2@SPDEF!0.85!6.16!SPDEF;;chr9:14314131..14314147,-!p2@NFIB!0.84!34.91!NFIB;;chr15:100106244..100106259,+!p2@MEF2A!0.84!14.72!MEF2A;;chr20:39317868..39317884,-!p1@MAFB!0.83!72.90!MAFB;;chr5:88178983..88179012,-!p1@MEF2C!0.83!48.25!MEF2C;;chr7:113726357..113726443,+!p1@FOXP2!0.83!10.27!FOXP2;;chr2:45236540..45236577,-!p1@SIX2!0.83!5.82!SIX2;;chr10:101292684..101292706,+!p1@NKX2-3!0.83!5.82!NKX2-3;;chr11:16627614..16627651,-!p4@SOX6!0.83!5.82!SOX6;;chr11:47400078..47400106,-!p1@SPI1!0.83!5.82!SPI1;;chr12:3068979..3068993,+!p11@TEAD4!0.83!5.82!TEAD4;;chr1:10856639..10856662,-!p2@CASZ1!0.83!5.82!CASZ1;;chr1:119530493..119530572,-!p1@TBX15!0.83!5.82!TBX15;;chr1:40367668..40367684,-!p2@MYCL1!0.83!5.82!MYCL1;;chrX:107018969..107019024,-!p6@TSC22D3!0.82!7.87!TSC22D3;;chr3:126076242..126076257,-!p1@KLF15!0.82!7.19!KLF15;;chr6:19837592..19837621,+!p1@ID4!0.81!35.59!ID4;;chr7:96654133..96654150,-!p1@DLX5!0.81!5.48!DLX5;;chr2:242556900..242556916,-!p6@THAP4!0.81!5.48!THAP4;;chr2:5832508..5832524,+!p1@SOX11!0.81!5.48!SOX11;;chr20:21686317..21686350,+!p1@PAX1!0.81!5.48!PAX1;;chr11:16629261..16629284,-!p1@SOX6!0.81!5.48!SOX6;;chr14:38064429..38064486,-!p1@FOXA1!0.81!5.48!FOXA1;;chr12:115121962..115121987,-!p1@TBX3!0.80!48.60!TBX3;;chr2:60780607..60780624,-!p2@BCL11A!0.80!17.45!BCL11A;;chr8:22550982..22550999,-!p1@EGR3!0.80!16.08!EGR3;;chrX:70315688..70315709,+!p1@FOXO4!0.80!13.00!FOXO4;;chr3:24536253..24536328,-!p1@THRB!0.80!10.61!THRB;;chr8:80679993..80680011,-!p1@HEY1!0.80!7.87!HEY1;;chr14:61116168..61116180,-!p2@SIX1!0.80!6.16!SIX1;;chr19:16435625..16435682,+!p1@KLF2!0.79!182.07!KLF2;;chr16:49698178..49698209,-!p1@ZNF423!0.79!5.13!ZNF423;;chr12:81101442..81101449,+!p3@MYF6!0.79!5.13!MYF6;;chr1:165414227..165414242,-!p2@RXRG!0.79!5.13!RXRG;;chr1:61548225..61548299,+!p1@NFIA!0.78!71.87!NFIA;;chrX:131623044..131623089,-!p1@MBNL3!0.78!22.59!MBNL3;;chr1:61548374..61548415,+!p4@NFIA!0.78!9.92!NFI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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000161;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000165;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000166;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001557;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001723;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0008814
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 40: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/tongue%252c%2520fetal%252c%2520donor1.CNhs11768.10059-101H5.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/tongue%252c%2520fetal%252c%2520donor1.CNhs11768.10059-101H5.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/tongue%252c%2520fetal%252c%2520donor1.CNhs11768.10059-101H5.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/tongue%252c%2520fetal%252c%2520donor1.CNhs11768.10059-101H5.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/tongue%252c%2520fetal%252c%2520donor1.CNhs11768.10059-101H5.hg38.nobarcode.ctss.bed.gz
 |id=FF:10059-101H5
 |is_a=EFO:0002091;;FF:0010059
@@ Line 45: / Line 51: @@
 |library_id=CNhs11768
 |library_id_phase_based=2:CNhs11768
-|name="tongue, fetal, donor1"
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10059
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10059
+|name=tongue, fetal, donor1
 |namespace=FANTOM5
 |part_of=
 |profile_cagescan=,,,
-|profile_hcage="CNhs11768,LSID820,release009,COMPLETED"
+|profile_hcage=CNhs11768,LSID820,release009,COMPLETED
 |profile_rnaseq=
-|profile_srnaseq=",,,"
+|profile_srnaseq=,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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@@ Line 89: / Line 100: @@
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10059-101H5;search_select_hide=table117:FF:10059-101H5
 }}

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FF:10059-101H5: Difference between revisions

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Latest revision as of 12:18, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0