Personal tools

FF:10792-110H9: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(5 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005413
|DRA_sample_Accession=CAGE@SAMD00005413
|accession_numbers=CAGE;DRX007804;DRR008676;DRZ000101;DRZ001486
|accession_numbers=CAGE;DRX007804;DRR008676;DRZ000101;DRZ001486;DRZ011451;DRZ012836
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000255
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000255
Line 41: Line 41:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M2%2529%2520cell%2520line%253aKasumi-6.CNhs13052.10792-110H9.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M2%2529%2520cell%2520line%253aKasumi-6.CNhs13052.10792-110H9.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M2%2529%2520cell%2520line%253aKasumi-6.CNhs13052.10792-110H9.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M2%2529%2520cell%2520line%253aKasumi-6.CNhs13052.10792-110H9.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M2%2529%2520cell%2520line%253aKasumi-6.CNhs13052.10792-110H9.hg38.nobarcode.ctss.bed.gz
|id=FF:10792-110H9
|id=FF:10792-110H9
|is_a=EFO:0002091;;FF:0000210;;FF:0101883
|is_a=EFO:0002091;;FF:0000210;;FF:0101883
Line 46: Line 51:
|library_id=CNhs13052
|library_id=CNhs13052
|library_id_phase_based=2:CNhs13052
|library_id_phase_based=2:CNhs13052
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10792
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10792
|name=acute myeloid leukemia (FAB M2) cell line:Kasumi-6
|name=acute myeloid leukemia (FAB M2) cell line:Kasumi-6
|namespace=FANTOM5
|namespace=FANTOM5
Line 53: Line 62:
|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
|repeat_enrich_byfamily=0,0,0.0537401810315495,0,0,0,0,0.10506389932175,0,-0.112662868920916,0.535430112384809,0,0,0,0,0,0,0,0,0,0,0.193568230737617,0,0,-0.153323010348428,0,0,0,0,0,0.413441113376821,0,0,0.41447036896765,0,0,0,0,0,0,0,0,0,0,0,0,-0.0307039883051056,0.27935148601805,0,0,0,0,0,0,0,0.0295251599187151,0,0,0,0.547426958746512,0,-0.0201222447497941,0,0.0965758694950116,0,0,0.0962246035245198,0,0,0,0,0,0,0,0,0,0,0.326988596678969,0,0,0,0,0,0,0,0,0,0.240847606889758,0,0,-0.0142351943053385,-0.354401394550498,0,0,0,-0.0584468268118252,0.0248574374403157,0.0537401810315495,0,0,0.107480362063099,0.0955328794999103,0.297843745170525,0,0,0,0,0,0,0.107480362063099,0,0,0,0,0,0,0,0,0,0,-0.0426334128909115,0.107480362063099,0,0,-0.036034780460373,-0.14242554553225,0,0,0.107480362063099,0,0,0
|repeat_enrich_byfamily=0,0,0.0537401810315495,0,0,0,0,0.10506389932175,0,-0.112662868920916,0.535430112384809,0,0,0,0,0,0,0,0,0,0,0.193568230737617,0,0,-0.153323010348428,0,0,0,0,0,0.413441113376821,0,0,0.41447036896765,0,0,0,0,0,0,0,0,0,0,0,0,-0.0307039883051056,0.27935148601805,0,0,0,0,0,0,0,0.0295251599187151,0,0,0,0.547426958746512,0,-0.0201222447497941,0,0.0965758694950116,0,0,0.0962246035245198,0,0,0,0,0,0,0,0,0,0,0.326988596678969,0,0,0,0,0,0,0,0,0,0.240847606889758,0,0,-0.0142351943053385,-0.354401394550498,0,0,0,-0.0584468268118252,0.0248574374403157,0.0537401810315495,0,0,0.107480362063099,0.0955328794999103,0.297843745170525,0,0,0,0,0,0,0.107480362063099,0,0,0,0,0,0,0,0,0,0,-0.0426334128909115,0.107480362063099,0,0,-0.036034780460373,-0.14242554553225,0,0,0.107480362063099,0,0,0
|repeat_enrich_byname=0,0,0,0.107480362063099,0.0955328794999103,0,0.107480362063099,0,0,0.107480362063099,0,0,0.265381929408136,0,0,0,-0.247178875285564,0.294069554014879,-0.474086218752008,-0.143515142523472,0.0967841153688085,0,-0.330494971540762,0,0,0,0,0,0,0,0,0,-0.128119866952565,0,-0.0504125515893149,0,0,0.0727167655109672,0,0.08266011675383,0.0215163657805616,0,0.0162078960427233,-0.0683442610773682,0,0,0,0,-0.0407655892614482,0,-0.0133991217306417,0.110848062414199,-0.221611588102807,-0.445591931887236,-0.055712496781182,0,0,0,-0.442680529505415,-0.179735012927724,0,0,0.0926747484091195,-0.181349618560659,0,0,-0.391044581551635,0,-0.289779512696191,-0.0604397418968705,0,0.175200875526783,0,0,0,0,0,0.265381929408136,0,0,0.107480362063099,0,0,-0.0574934668214365,0,0.193568230737617,0,0,0,-0.377742730654885,0,0,-0.373286155956567,-0.0216643979831024,-0.0005159229300597,-0.256708296629493,0,0.0785421873745528,-0.0499040711629685,-0.265858783948055,-0.00543141679385983,-0.147401849371139,-0.189981719549847,0,0.103471775541817,-0.592704398376395,-0.00322998646286765,-0.156750749794891,0.046061397125747,-1.2314085082871,-0.301920372252247,0,0,0,-0.499761857829294,0,0,-0.490114714476774,-0.0506897481715375,-0.507493138136226,-0.535026415031877,-0.181333109199089,0.273543280719488,-0.0395325284566706,-0.130447856217626,-0.0114262378898439,0.278684213193702,0,0.511399009644878,-0.0877514257027229,-0.0361587110399547,-0.313802426834954,0.371156501819488,0,-0.218595532402845,-0.0683442610773682,0.190465957192233,-0.716542508809737,0.078557673394843,0,-0.0404476547983361,-0.251788634192443,0,0,0.380931914384466,0,0,-0.0536667731616995,-0.539492143030166,0.239254118716824,0,0.0323872104100591,-0.00341377906324364,-0.0415865755301475,0,-0.0233528816147619,-0.146009897457394,-0.0633583527006759,0.281526133611584,0,-0.215314410462589,0.0203390110354597,-0.234105308351445,0.0497148748806313,-0.0584468268118252,0.108171966689433,0.0314095644659536,-0.0588507648595726,-0.681459502727128,0,-0.0881268324752877,-0.210162025788965,-0.88354475051838,0.0375027483620486,-0.0472292895463378,-0.420035605890087,0,-0.245384524045765,0,-0.203872110056206,0,0.357734315540021,-0.54043375147324,0.941380684903344,-0.061110487031788,0,0.129641698029054,-0.788130937773974,0,-0.27238437317198,-0.0418423631493412,0,0.278542116987348,-0.697695966512583,0.0845348351789631,-0.138989456679195,0,-0.790080158389657,0,0,-0.143648634714494,0.432010846252919,0.107480362063099,-0.062402614514024,0.0312354029620624,-0.0928170315504165,-0.00849071137183514,0.380931914384466,0,-0.645700337992725,0,0,0.341619412010162,-0.0636048451378017,-0.354401394550498,0.12760557289771,0,-0.108622809454255,0,0.107480362063099,0.0160404647724411,0.580693721397589,-0.087904590797688,0,0.107480362063099,-0.03542669643783,-0.116628112990133,0,0,0,0,0,0,0,0,0,0,0,0.341462169693765,-0.247352968153349,0,0,0,0,0,0,0,-0.129406115216345,0,0,-0.376327469741682,0.0820983718202798,0.0705508150611965,0,0,0,0,0.213185797768512,0.0621453673134119,0,-0.131862706497632,0,0,0,0,0.240847606889758,0,0.107480362063099,0.0537401810315495,0.0537401810315495,0.414379223218705,0.210700240766781,0,0,0,0.59568749034105,0,0,0,0,-0.253413822888072,0,0.059013468682344,0.391203057317568,0,-0.268032790228254,0.111986351190775,0,0.135865296384184,-0.125444695097569,-0.420928071105785,0,0,-0.261347131789888,0,0,0.296457656059711,0,0,0,0,0,0,0,0.107480362063099,0,0.453172371617552,0,0,0,0,0,0,0,0,0,0,0,-0.1591794668207,0.0152563054045885,0,0,0,0,0,0,0,-0.0241060230789031,0.0669991466557717,0.000176082191331854,0,0,0,0,0,0,0,0.196060944354065,0,0,0,0,0,0.0965758694950116,0,0.193568230737617,0,0.107480362063099,0.877291994032,0,0,-0.277362132193514,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0158387239723488,-0.112662868920916,0,0,0,0,0,0,0,0.0521552984728784,0,0.193568230737617,0,0,0.0796838570286395,0,0,0,0.32411281553283,0,0.10506389932175,0,0,0,0,0,0,0.0967841153688085,0.0537401810315495,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.478347193796957,0,-0.138867502287709,0,0,0,-0.178888171601492,0,0,0,0,0,0,0.183114176132466,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107480362063099,0,0,0,0,0,0,0.0992633001610491,0,0,0,0,0,0,0,0.413441113376821,0,0,0.0584914865998318,0,0,0,0,0,0,-0.051922000520525,-0.186436284454339,-0.046047224861832,0,0,0,0.315509535625685,0.547426958746512,0,0,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0,0,0,0,0,0,0.0472939252571848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1595568674622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.348890732053348,0,0,0,-0.019517998919427,0,0,0,0,0,0,0.107480362063099,0,0.380931914384466,0,0,0,0,0,0,0,0,0,0,0,0.107480362063099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.380931914384466,0,0,0,-0.0244969525659285,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0592582868240447,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.380931914384466,0.410590290092817,0,0,0,0,0.27935148601805,0,0,0,0,0,0,0,0.0093556175669552,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439338529376589,0,0,-0.124460247985338,0,0,0.0537401810315495,0,0,0,0,0,0,0,0,0,0.13224805158749,0,0,0,0,0,0,0,0,0,0,0.0590503198374302,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.326988596678969,0,0,0,0,0,0,0,-0.0433579076669494,-0.14242554553225,0,0,0.350699572438641,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107480362063099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0537401810315495,0,0,0,0,0,0,0,0,0,0,0,0,0,0.073263671655565,0,0,0,0,0,0,0,0,0,0,0.193568230737617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107480362063099,0,-0.0296969223726757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107480362063099,0,0,0,0,0,0.107480362063099,0,0.107480362063099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0384106300224869,0,0,0,0,0,0,0,0,-0.620396418749604,0,0,0,0,0,0,0,0,0.380931914384466,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107480362063099,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.192747187844922,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0967841153688085,0,0,0,0,0,0,0,0,0.163494298339485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0433179132161714,-0.157236414286507,0,0,0,0,0,0,0,-0.122695996997001,0,0,0,0,0.107480362063099,0,0.107480362063099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0537401810315495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0300003975139875,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100974378655684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265381929408136,0,0,0,0.0967841153688085,0,0,0,0.185639930743158,0,0,0,0,0,0,0,0,0,0.0537401810315495,0,0,0,0,0,0,0,0,0.0962246035245198,0,0,0,0,0,0.132690964704068,0,0,0,0,0,0,0,0,0,0.107480362063099,0,0,0,0,0,0.41447036896765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0537401810315495,0,0,0,0.0827529821824815,0.0537401810315495,0,0,0,0,0,0,0,0,0,-0.0412500915278073,0,0,0,0,0.193568230737617,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0291262406978112,0,0,-0.0422874684771159,0,-0.0322202382165595,0.142964400828109,0,0,0,0,0,-0.0474944647192205,0,0,0,0,0,0,0,0,0,0.107480362063099,-0.0400762477245316,0.193568230737617,0,0.0921365776489818,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0537401810315495,0.300621626074623,0,0.172539940374377,0.507095859515442,0,0,0.241720693551979,0,0.050387551164057,0.380931914384466,0.0537401810315495,0,-0.174992895090299,-0.1122950430312,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0537401810315495,0,0,0.265381929408136,0,0.0506214159004998,0.0575129610843997,0,0.360953961865855,0,0,0.248883286026682,0,0,0,0.284972507010879
|repeat_enrich_byname=0,0,0,0.107480362063099,0.0955328794999103,0,0.107480362063099,0,0,0.107480362063099,0,0,0.265381929408136,0,0,0,-0.247178875285564,0.294069554014879,-0.474086218752008,-0.143515142523472,0.0967841153688085,0,-0.330494971540762,0,0,0,0,0,0,0,0,0,-0.128119866952565,0,-0.0504125515893149,0,0,0.0727167655109672,0,0.08266011675383,0.0215163657805616,0,0.0162078960427233,-0.0683442610773682,0,0,0,0,-0.0407655892614482,0,-0.0133991217306417,0.110848062414199,-0.221611588102807,-0.445591931887236,-0.055712496781182,0,0,0,-0.442680529505415,-0.179735012927724,0,0,0.0926747484091195,-0.181349618560659,0,0,-0.391044581551635,0,-0.289779512696191,-0.0604397418968705,0,0.175200875526783,0,0,0,0,0,0.265381929408136,0,0,0.107480362063099,0,0,-0.0574934668214365,0,0.193568230737617,0,0,0,-0.377742730654885,0,0,-0.373286155956567,-0.0216643979831024,-0.0005159229300597,-0.256708296629493,0,0.0785421873745528,-0.0499040711629685,-0.265858783948055,-0.00543141679385983,-0.147401849371139,-0.189981719549847,0,0.103471775541817,-0.592704398376395,-0.00322998646286765,-0.156750749794891,0.046061397125747,-1.2314085082871,-0.301920372252247,0,0,0,-0.499761857829294,0,0,-0.490114714476774,-0.0506897481715375,-0.507493138136226,-0.535026415031877,-0.181333109199089,0.273543280719488,-0.0395325284566706,-0.130447856217626,-0.0114262378898439,0.278684213193702,0,0.511399009644878,-0.0877514257027229,-0.0361587110399547,-0.313802426834954,0.371156501819488,0,-0.218595532402845,-0.0683442610773682,0.190465957192233,-0.716542508809737,0.078557673394843,0,-0.0404476547983361,-0.251788634192443,0,0,0.380931914384466,0,0,-0.0536667731616995,-0.539492143030166,0.239254118716824,0,0.0323872104100591,-0.00341377906324364,-0.0415865755301475,0,-0.0233528816147619,-0.146009897457394,-0.0633583527006759,0.281526133611584,0,-0.215314410462589,0.0203390110354597,-0.234105308351445,0.0497148748806313,-0.0584468268118252,0.108171966689433,0.0314095644659536,-0.0588507648595726,-0.681459502727128,0,-0.0881268324752877,-0.210162025788965,-0.88354475051838,0.0375027483620486,-0.0472292895463378,-0.420035605890087,0,-0.245384524045765,0,-0.203872110056206,0,0.357734315540021,-0.54043375147324,0.941380684903344,-0.061110487031788,0,0.129641698029054,-0.788130937773974,0,-0.27238437317198,-0.0418423631493412,0,0.278542116987348,-0.697695966512583,0.0845348351789631,-0.138989456679195,0,-0.790080158389657,0,0,-0.143648634714494,0.432010846252919,0.107480362063099,-0.062402614514024,0.0312354029620624,-0.0928170315504165,-0.00849071137183514,0.380931914384466,0,-0.645700337992725,0,0,0.341619412010162,-0.0636048451378017,-0.354401394550498,0.12760557289771,0,-0.108622809454255,0,0.107480362063099,0.0160404647724411,0.580693721397589,-0.087904590797688,0,0.107480362063099,-0.03542669643783,-0.116628112990133,0,0,0,0,0,0,0,0,0,0,0,0.341462169693765,-0.247352968153349,0,0,0,0,0,0,0,-0.129406115216345,0,0,-0.376327469741682,0.0820983718202798,0.0705508150611965,0,0,0,0,0.213185797768512,0.0621453673134119,0,-0.131862706497632,0,0,0,0,0.240847606889758,0,0.107480362063099,0.0537401810315495,0.0537401810315495,0.414379223218705,0.210700240766781,0,0,0,0.59568749034105,0,0,0,0,-0.253413822888072,0,0.059013468682344,0.391203057317568,0,-0.268032790228254,0.111986351190775,0,0.135865296384184,-0.125444695097569,-0.420928071105785,0,0,-0.261347131789888,0,0,0.296457656059711,0,0,0,0,0,0,0,0.107480362063099,0,0.453172371617552,0,0,0,0,0,0,0,0,0,0,0,-0.1591794668207,0.0152563054045885,0,0,0,0,0,0,0,-0.0241060230789031,0.0669991466557717,0.000176082191331854,0,0,0,0,0,0,0,0.196060944354065,0,0,0,0,0,0.0965758694950116,0,0.193568230737617,0,0.107480362063099,0.877291994032,0,0,-0.277362132193514,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0158387239723488,-0.112662868920916,0,0,0,0,0,0,0,0.0521552984728784,0,0.193568230737617,0,0,0.0796838570286395,0,0,0,0.32411281553283,0,0.10506389932175,0,0,0,0,0,0,0.0967841153688085,0.0537401810315495,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.478347193796957,0,-0.138867502287709,0,0,0,-0.178888171601492,0,0,0,0,0,0,0.183114176132466,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107480362063099,0,0,0,0,0,0,0.0992633001610491,0,0,0,0,0,0,0,0.413441113376821,0,0,0.0584914865998318,0,0,0,0,0,0,-0.051922000520525,-0.186436284454339,-0.046047224861832,0,0,0,0.315509535625685,0.547426958746512,0,0,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0,0,0,0,0,0,0.0472939252571848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1595568674622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.348890732053348,0,0,0,-0.019517998919427,0,0,0,0,0,0,0.107480362063099,0,0.380931914384466,0,0,0,0,0,0,0,0,0,0,0,0.107480362063099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.380931914384466,0,0,0,-0.0244969525659285,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0592582868240447,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.380931914384466,0.410590290092817,0,0,0,0,0.27935148601805,0,0,0,0,0,0,0,0.0093556175669552,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439338529376589,0,0,-0.124460247985338,0,0,0.0537401810315495,0,0,0,0,0,0,0,0,0,0.13224805158749,0,0,0,0,0,0,0,0,0,0,0.0590503198374302,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.326988596678969,0,0,0,0,0,0,0,-0.0433579076669494,-0.14242554553225,0,0,0.350699572438641,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107480362063099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0537401810315495,0,0,0,0,0,0,0,0,0,0,0,0,0,0.073263671655565,0,0,0,0,0,0,0,0,0,0,0.193568230737617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107480362063099,0,-0.0296969223726757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107480362063099,0,0,0,0,0,0.107480362063099,0,0.107480362063099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0384106300224869,0,0,0,0,0,0,0,0,-0.620396418749604,0,0,0,0,0,0,0,0,0.380931914384466,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107480362063099,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.192747187844922,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0967841153688085,0,0,0,0,0,0,0,0,0.163494298339485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0433179132161714,-0.157236414286507,0,0,0,0,0,0,0,-0.122695996997001,0,0,0,0,0.107480362063099,0,0.107480362063099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0537401810315495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0300003975139875,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100974378655684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265381929408136,0,0,0,0.0967841153688085,0,0,0,0.185639930743158,0,0,0,0,0,0,0,0,0,0.0537401810315495,0,0,0,0,0,0,0,0,0.0962246035245198,0,0,0,0,0,0.132690964704068,0,0,0,0,0,0,0,0,0,0.107480362063099,0,0,0,0,0,0.41447036896765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0537401810315495,0,0,0,0.0827529821824815,0.0537401810315495,0,0,0,0,0,0,0,0,0,-0.0412500915278073,0,0,0,0,0.193568230737617,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0291262406978112,0,0,-0.0422874684771159,0,-0.0322202382165595,0.142964400828109,0,0,0,0,0,-0.0474944647192205,0,0,0,0,0,0,0,0,0,0.107480362063099,-0.0400762477245316,0.193568230737617,0,0.0921365776489818,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0537401810315495,0.300621626074623,0,0.172539940374377,0.507095859515442,0,0,0.241720693551979,0,0.050387551164057,0.380931914384466,0.0537401810315495,0,-0.174992895090299,-0.1122950430312,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0537401810315495,0,0,0.265381929408136,0,0.0506214159004998,0.0575129610843997,0,0.360953961865855,0,0,0.248883286026682,0,0,0,0.284972507010879
Line 90: Line 100:
|top_motifs=MYB:2.01542572499;ALX1:1.92837605817;YY1:1.40520928024;NANOG{mouse}:1.3488228133;STAT1,3:1.31513674822;ZBTB16:1.2881787963;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.2538707192;E2F1..5:1.24998385864;ELF1,2,4:1.0959170023;GATA6:1.08034426275;SPIB:1.03726252676;IKZF2:0.999158802799;POU3F1..4:0.989558835258;ARID5B:0.980670982875;HOXA9_MEIS1:0.949901632682;DBP:0.923631830205;BREu{core}:0.91901570171;TEF:0.907171630302;CDX1,2,4:0.805390140793;PAX4:0.796327530245;NKX6-1,2:0.773753767242;SPI1:0.757477308665;PITX1..3:0.756802870849;FOXP3:0.746652715623;FOXA2:0.734474616114;DMAP1_NCOR{1,2}_SMARC:0.720886597396;ELK1,4_GABP{A,B1}:0.711935108209;ZNF143:0.617234767017;ETS1,2:0.616645316809;AIRE:0.612566312004;NKX2-2,8:0.605769791445;ZNF384:0.590253397316;TLX2:0.585341107915;NFY{A,B,C}:0.584514554951;NKX2-3_NKX2-5:0.577883439836;RUNX1..3:0.568931413175;RBPJ:0.544755962627;FOX{I1,J2}:0.521677444883;CUX2:0.507430517488;RXRA_VDR{dimer}:0.453632031643;SREBF1,2:0.425807120419;MYOD1:0.424498802243;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.415931775298;NRF1:0.398438592283;RFX2..5_RFXANK_RFXAP:0.389992492193;FOXP1:0.364954089975;bHLH_family:0.315915384311;NKX3-1:0.308595150572;HBP1_HMGB_SSRP1_UBTF:0.297236600526;NANOG:0.248241704143;EVI1:0.221026046246;ONECUT1,2:0.21982904271;ESRRA:0.218526696405;AHR_ARNT_ARNT2:0.20491943666;TOPORS:0.190322058537;RXR{A,B,G}:0.18729429944;GZF1:0.167840915421;IRF1,2:0.152611948458;FOXQ1:0.141478870356;FOXN1:0.137313416085;FOXM1:0.137309291898;PAX8:0.129943459861;IRF7:0.0967290201143;PBX1:0.0705352902237;PRRX1,2:0.0670352194065;AR:0.057061370295;HAND1,2:0.0475462381696;STAT5{A,B}:0.0133042204378;ZNF238:0.0124369062864;NR6A1:0.00523897082896;GCM1,2:-0.000660968952848;HOX{A6,A7,B6,B7}:-0.00195100132819;TGIF1:-0.0566988476867;EN1,2:-0.0606606972253;MYBL2:-0.0867721528755;SNAI1..3:-0.0874351375351;NKX2-1,4:-0.0964411996474;KLF4:-0.115123891403;VSX1,2:-0.121940749051;ZEB1:-0.128897237605;CRX:-0.132542123043;NR5A1,2:-0.166010200734;OCT4_SOX2{dimer}:-0.166753800657;PAX2:-0.168862458593;PAX6:-0.181542928384;POU6F1:-0.184274969074;PAX3,7:-0.193563144603;ATF5_CREB3:-0.205986777822;NFKB1_REL_RELA:-0.23822332698;MYFfamily:-0.24776429597;POU2F1..3:-0.257270851157;RFX1:-0.269065792642;RORA:-0.27461872897;PPARG:-0.276868432551;XBP1:-0.280467002559;CEBPA,B_DDIT3:-0.281829872333;UFEwm:-0.285438834008;HNF4A_NR2F1,2:-0.289375788621;HOX{A4,D4}:-0.294753668218;NFE2:-0.304813896577;HNF1A:-0.319464477681;SOX{8,9,10}:-0.341100534424;BPTF:-0.342716348097;ESR1:-0.359047406772;REST:-0.377598271552;CREB1:-0.379812969831;PRDM1:-0.401031247361;SOX17:-0.402369767682;GFI1:-0.403287030863;POU5F1:-0.409977978727;EP300:-0.41504247687;ATF4:-0.427296834119;GATA4:-0.42809468599;NKX3-2:-0.428405380679;HMGA1,2:-0.432742744503;HES1:-0.459977517751;NFIX:-0.486826736172;FOXO1,3,4:-0.492078190074;RREB1:-0.4979625181;LMO2:-0.523318635122;SMAD1..7,9:-0.541357737894;FOSL2:-0.543599367559;HIF1A:-0.545115042867;NFE2L1:-0.545652266904;NFE2L2:-0.56391789775;TFDP1:-0.576527041309;POU1F1:-0.579703141367;HLF:-0.582845569398;PAX5:-0.595001702858;ZBTB6:-0.600051564387;PDX1:-0.614928022082;TFAP4:-0.616415687741;FOXD3:-0.618207880766;ZNF148:-0.629797646072;STAT2,4,6:-0.667094360655;FOS_FOS{B,L1}_JUN{B,D}:-0.669684405853;BACH2:-0.67463617301;CDC5L:-0.676679740961;MEF2{A,B,C,D}:-0.702249100664;NFIL3:-0.704677970559;FOX{F1,F2,J1}:-0.760982241205;NHLH1,2:-0.76217285627;TAL1_TCF{3,4,12}:-0.769922948607;SOX2:-0.770911054888;HOX{A5,B5}:-0.775852463306;LEF1_TCF7_TCF7L1,2:-0.830235176056;MZF1:-0.83468618675;SOX5:-0.850681972602;PAX1,9:-0.878451266025;LHX3,4:-0.89057039884;ZIC1..3:-0.897962085132;NR1H4:-0.958301160112;SRF:-0.986749229347;IKZF1:-1.00872255743;GTF2I:-1.0095936735;FOX{D1,D2}:-1.01405143857;SPZ1:-1.02879186699;ZFP161:-1.03868232775;HIC1:-1.05456050502;ADNP_IRX_SIX_ZHX:-1.06732271502;GTF2A1,2:-1.08818946901;T:-1.1327680417;TFAP2{A,C}:-1.15233775209;NFATC1..3:-1.15417486469;MED-1{core}:-1.17384835315;ATF2:-1.18926702981;GLI1..3:-1.21144600861;ATF6:-1.21669655887;TLX1..3_NFIC{dimer}:-1.2293072725;ZNF423:-1.26296195454;MAZ:-1.28599593724;HSF1,2:-1.29367180388;MTE{core}:-1.3214470484;TBP:-1.32464669391;MAFB:-1.33896574822;TEAD1:-1.35018038321;NR3C1:-1.35935357705;FOXL1:-1.36569982234;ALX4:-1.39367746651;TP53:-1.41638021263;MTF1:-1.42515238783;GFI1B:-1.43589266056;TFAP2B:-1.44262617148;EBF1:-1.45484259504;HMX1:-1.45883172813;PATZ1:-1.52638529709;XCPE1{core}:-1.67612868699;EGR1..3:-1.69969940029;TBX4,5:-1.73023890441;SP1:-1.88430138021;JUN:-1.9331272194;TFCP2:-2.19197927525
|top_motifs=MYB:2.01542572499;ALX1:1.92837605817;YY1:1.40520928024;NANOG{mouse}:1.3488228133;STAT1,3:1.31513674822;ZBTB16:1.2881787963;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.2538707192;E2F1..5:1.24998385864;ELF1,2,4:1.0959170023;GATA6:1.08034426275;SPIB:1.03726252676;IKZF2:0.999158802799;POU3F1..4:0.989558835258;ARID5B:0.980670982875;HOXA9_MEIS1:0.949901632682;DBP:0.923631830205;BREu{core}:0.91901570171;TEF:0.907171630302;CDX1,2,4:0.805390140793;PAX4:0.796327530245;NKX6-1,2:0.773753767242;SPI1:0.757477308665;PITX1..3:0.756802870849;FOXP3:0.746652715623;FOXA2:0.734474616114;DMAP1_NCOR{1,2}_SMARC:0.720886597396;ELK1,4_GABP{A,B1}:0.711935108209;ZNF143:0.617234767017;ETS1,2:0.616645316809;AIRE:0.612566312004;NKX2-2,8:0.605769791445;ZNF384:0.590253397316;TLX2:0.585341107915;NFY{A,B,C}:0.584514554951;NKX2-3_NKX2-5:0.577883439836;RUNX1..3:0.568931413175;RBPJ:0.544755962627;FOX{I1,J2}:0.521677444883;CUX2:0.507430517488;RXRA_VDR{dimer}:0.453632031643;SREBF1,2:0.425807120419;MYOD1:0.424498802243;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.415931775298;NRF1:0.398438592283;RFX2..5_RFXANK_RFXAP:0.389992492193;FOXP1:0.364954089975;bHLH_family:0.315915384311;NKX3-1:0.308595150572;HBP1_HMGB_SSRP1_UBTF:0.297236600526;NANOG:0.248241704143;EVI1:0.221026046246;ONECUT1,2:0.21982904271;ESRRA:0.218526696405;AHR_ARNT_ARNT2:0.20491943666;TOPORS:0.190322058537;RXR{A,B,G}:0.18729429944;GZF1:0.167840915421;IRF1,2:0.152611948458;FOXQ1:0.141478870356;FOXN1:0.137313416085;FOXM1:0.137309291898;PAX8:0.129943459861;IRF7:0.0967290201143;PBX1:0.0705352902237;PRRX1,2:0.0670352194065;AR:0.057061370295;HAND1,2:0.0475462381696;STAT5{A,B}:0.0133042204378;ZNF238:0.0124369062864;NR6A1:0.00523897082896;GCM1,2:-0.000660968952848;HOX{A6,A7,B6,B7}:-0.00195100132819;TGIF1:-0.0566988476867;EN1,2:-0.0606606972253;MYBL2:-0.0867721528755;SNAI1..3:-0.0874351375351;NKX2-1,4:-0.0964411996474;KLF4:-0.115123891403;VSX1,2:-0.121940749051;ZEB1:-0.128897237605;CRX:-0.132542123043;NR5A1,2:-0.166010200734;OCT4_SOX2{dimer}:-0.166753800657;PAX2:-0.168862458593;PAX6:-0.181542928384;POU6F1:-0.184274969074;PAX3,7:-0.193563144603;ATF5_CREB3:-0.205986777822;NFKB1_REL_RELA:-0.23822332698;MYFfamily:-0.24776429597;POU2F1..3:-0.257270851157;RFX1:-0.269065792642;RORA:-0.27461872897;PPARG:-0.276868432551;XBP1:-0.280467002559;CEBPA,B_DDIT3:-0.281829872333;UFEwm:-0.285438834008;HNF4A_NR2F1,2:-0.289375788621;HOX{A4,D4}:-0.294753668218;NFE2:-0.304813896577;HNF1A:-0.319464477681;SOX{8,9,10}:-0.341100534424;BPTF:-0.342716348097;ESR1:-0.359047406772;REST:-0.377598271552;CREB1:-0.379812969831;PRDM1:-0.401031247361;SOX17:-0.402369767682;GFI1:-0.403287030863;POU5F1:-0.409977978727;EP300:-0.41504247687;ATF4:-0.427296834119;GATA4:-0.42809468599;NKX3-2:-0.428405380679;HMGA1,2:-0.432742744503;HES1:-0.459977517751;NFIX:-0.486826736172;FOXO1,3,4:-0.492078190074;RREB1:-0.4979625181;LMO2:-0.523318635122;SMAD1..7,9:-0.541357737894;FOSL2:-0.543599367559;HIF1A:-0.545115042867;NFE2L1:-0.545652266904;NFE2L2:-0.56391789775;TFDP1:-0.576527041309;POU1F1:-0.579703141367;HLF:-0.582845569398;PAX5:-0.595001702858;ZBTB6:-0.600051564387;PDX1:-0.614928022082;TFAP4:-0.616415687741;FOXD3:-0.618207880766;ZNF148:-0.629797646072;STAT2,4,6:-0.667094360655;FOS_FOS{B,L1}_JUN{B,D}:-0.669684405853;BACH2:-0.67463617301;CDC5L:-0.676679740961;MEF2{A,B,C,D}:-0.702249100664;NFIL3:-0.704677970559;FOX{F1,F2,J1}:-0.760982241205;NHLH1,2:-0.76217285627;TAL1_TCF{3,4,12}:-0.769922948607;SOX2:-0.770911054888;HOX{A5,B5}:-0.775852463306;LEF1_TCF7_TCF7L1,2:-0.830235176056;MZF1:-0.83468618675;SOX5:-0.850681972602;PAX1,9:-0.878451266025;LHX3,4:-0.89057039884;ZIC1..3:-0.897962085132;NR1H4:-0.958301160112;SRF:-0.986749229347;IKZF1:-1.00872255743;GTF2I:-1.0095936735;FOX{D1,D2}:-1.01405143857;SPZ1:-1.02879186699;ZFP161:-1.03868232775;HIC1:-1.05456050502;ADNP_IRX_SIX_ZHX:-1.06732271502;GTF2A1,2:-1.08818946901;T:-1.1327680417;TFAP2{A,C}:-1.15233775209;NFATC1..3:-1.15417486469;MED-1{core}:-1.17384835315;ATF2:-1.18926702981;GLI1..3:-1.21144600861;ATF6:-1.21669655887;TLX1..3_NFIC{dimer}:-1.2293072725;ZNF423:-1.26296195454;MAZ:-1.28599593724;HSF1,2:-1.29367180388;MTE{core}:-1.3214470484;TBP:-1.32464669391;MAFB:-1.33896574822;TEAD1:-1.35018038321;NR3C1:-1.35935357705;FOXL1:-1.36569982234;ALX4:-1.39367746651;TP53:-1.41638021263;MTF1:-1.42515238783;GFI1B:-1.43589266056;TFAP2B:-1.44262617148;EBF1:-1.45484259504;HMX1:-1.45883172813;PATZ1:-1.52638529709;XCPE1{core}:-1.67612868699;EGR1..3:-1.69969940029;TBX4,5:-1.73023890441;SP1:-1.88430138021;JUN:-1.9331272194;TFCP2:-2.19197927525
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10792-110H9;search_select_hide=table117:FF:10792-110H9
}}
}}

Latest revision as of 15:05, 3 June 2020

Name:acute myeloid leukemia (FAB M2) cell line:Kasumi-6
Species:Human (Homo sapiens)
Library ID:CNhs13052
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexmale
age64
cell typemyeloid progenitor cell
cell lineKasumi-6
companyJAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005413
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13052 CAGE DRX007804 DRR008676
Accession ID Hg19

Library idBAMCTSS
CNhs13052 DRZ000101 DRZ001486
Accession ID Hg38

Library idBAMCTSS
CNhs13052 DRZ011451 DRZ012836
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.244
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.438
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0166
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.287
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.381
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0862
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0435
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0.0886
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.384
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.429
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.107
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.379
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.106
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.421
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13052

Jaspar motifP-value
MA0002.20.00563
MA0003.10.725
MA0004.10.0574
MA0006.10.248
MA0007.10.969
MA0009.10.0888
MA0014.10.607
MA0017.10.0225
MA0018.24.60786e-4
MA0019.10.0392
MA0024.10.00141
MA0025.10.154
MA0027.10.00101
MA0028.12.47552e-4
MA0029.10.414
MA0030.10.0694
MA0031.10.623
MA0035.20.0279
MA0038.11.20242e-5
MA0039.20.148
MA0040.10.461
MA0041.10.301
MA0042.10.373
MA0043.10.0984
MA0046.10.192
MA0047.20.208
MA0048.10.387
MA0050.10.0187
MA0051.10.0967
MA0052.12.3291e-4
MA0055.10.191
MA0057.10.612
MA0058.10.0213
MA0059.10.00444
MA0060.10.169
MA0061.10.288
MA0062.21.86671e-8
MA0065.20.0158
MA0066.10.583
MA0067.10.943
MA0068.10.0584
MA0069.10.476
MA0070.10.883
MA0071.10.111
MA0072.10.64
MA0073.10.718
MA0074.10.879
MA0076.12.7898e-5
MA0077.10.382
MA0078.10.4
MA0079.20.211
MA0080.22.10615e-13
MA0081.10.00292
MA0083.14.21553e-5
MA0084.10.919
MA0087.10.182
MA0088.10.0376
MA0090.13.68006e-5
MA0091.10.456
MA0092.10.984
MA0093.10.0627
MA0099.22.74275e-7
MA0100.12.58654e-5
MA0101.10.504
MA0102.20.468
MA0103.10.183
MA0104.20.00103
MA0105.17.71254e-4
MA0106.10.973
MA0107.10.0413
MA0108.21.75524e-16
MA0111.10.181
MA0112.20.0653
MA0113.10.574
MA0114.10.051
MA0115.10.219
MA0116.11.14718e-4
MA0117.10.856
MA0119.10.387
MA0122.10.622
MA0124.10.562
MA0125.10.669
MA0131.10.278
MA0135.10.18
MA0136.17.11515e-21
MA0137.20.942
MA0138.20.493
MA0139.10.325
MA0140.10.00204
MA0141.10.043
MA0142.10.943
MA0143.10.876
MA0144.10.649
MA0145.10.61
MA0146.10.173
MA0147.16.27488e-4
MA0148.10.0876
MA0149.10.182
MA0150.10.598
MA0152.10.365
MA0153.10.0659
MA0154.10.0643
MA0155.10.95
MA0156.11.75421e-15
MA0157.10.976
MA0159.10.354
MA0160.10.0514
MA0162.10.728
MA0163.13.89635e-16
MA0164.10.992
MA0258.10.0514
MA0259.10.0849



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13052

Novel motifP-value
10.0362
100.00982
1000.32
1010.088
1020.882
1030.0678
1040.663
1050.559
1060.871
1070.405
1080.439
1090.0526
110.069
1100.182
1110.0226
1120.21
1130.688
1140.0566
1150.65
1160.277
1170.0103
1180.0429
1190.996
120.954
1200.402
1210.554
1220.507
1230.0619
1240.045
1250.0437
1260.286
1270.325
1280.711
1290.802
130.013
1300.897
1310.268
1320.565
1330.466
1340.238
1350.279
1360.351
1370.185
1380.542
1390.122
140.868
1400.456
1410.272
1420.106
1430.99
1440.529
1450.64
1460.845
1470.0511
1480.159
1490.237
150.131
1500.795
1510.746
1520.279
1530.859
1540.916
1550.00823
1560.729
1570.35
1580.376
1590.615
160.739
1600.229
1610.0178
1620.726
1630.856
1640.094
1650.663
1660.959
1670.0415
1680.279
1690.5
170.873
180.758
190.573
20.574
200.566
210.257
220.837
230.0798
240.199
250.162
260.0247
270.389
280.71
290.0311
30.0108
300.147
310.637
320.311
330.268
340.727
350.0903
360.0432
370.142
380.564
390.449
40.185
400.199
410.765
420.161
430.541
440.353
450.5
460.0677
470.0343
480.0796
490.224
50.976
500.81
510.748
520.277
530.404
540.668
550.719
560.9
570.154
580.146
590.748
60.359
600.889
610.0591
620.147
630.446
640.189
650.715
660.134
670.696
680.683
690.941
70.067
700.99
710.00648
720.731
730.501
740.251
750.00638
760.0887
770.881
780.0269
790.851
80.121
800.112
810.371
820.403
830.29
840.521
850.801
860.709
870.601
880.622
890.662
90.82
900.0376
910.371
920.995
930.673
940.522
950.0212
960.813
970.404
980.201
990.492



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13052


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
1240 (leukemia)
8692 (myeloid leukemia)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100737 (leukemia cell line sample)
0101035 (hematopoietic cell line sample)
0101883 (acute myeloid leukemia cell line sample)
0100740 (myeloid leukemia cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FF:10792-110H9&oldid=4576208"