FF:11275-116H6: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005090 | |DRA_sample_Accession=CAGE@SAMD00005090 | ||
|accession_numbers=CAGE;DRX008373;DRR009245;DRZ000670;DRZ002055 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005090 | ||
|accession_numbers=CAGE;DRX008373;DRR009245;DRZ000670;DRZ002055;DRZ012020;DRZ013405 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037175;DRR041541;DRZ007183 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0004121,UBERON:0011216,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0001017,UBERON:0001016 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0004121,UBERON:0011216,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0001017,UBERON:0001016 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000047,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002371,CL:0002319,CL:0000255,CL:0000034 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000047,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002371,CL:0002319,CL:0000255,CL:0000034 | ||
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|def= | |def= | ||
|expression_enrichment_score=chr15:57511609..57511651,+!p2@TCF12!2.44!446.95!TCF12;;chr4:57547454..57547469,-!p1@HOPX!2.42!264.26!HOPX;;chr1:23696348..23696363,-!p4@ZNF436!2.40!282.81!ZNF436;;chr14:29234581..29234601,+!p2@FOXG1!2.36!229.19!FOXG1;;chr3:181429704..181429722,+!p1@SOX2!2.34!216.23!SOX2;;chrX:25034067..25034088,-!p1@ARX!2.23!168.72!ARX;;chr9:126774018..126774055,+!p1@LHX2!2.19!153.73!LHX2;;chr14:29235961..29236008,+!p1@FOXG1!2.18!150.42!FOXG1;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!2.14!135.94!POU3F3;;chr16:51185172..51185197,-!p1@SALL1!2.08!117.90!SALL1;;chr14:29236269..29236285,+!p3@FOXG1!2.02!103.16!FOXG1;;chr3:181429741..181429767,+!p2@SOX2!2.01!101.13!SOX2;;chr7:100065686..100065701,-!p2@TSC22D4!1.96!90.71!TSC22D4;;chr11:31832658..31832681,-!p1@PAX6!1.91!80.55!PAX6;;chr1:23696308..23696339,-!p2@ZNF436!1.89!158.05!ZNF436;;chr2:63277948..63277974,+!p1@OTX1!1.86!71.15!OTX1;;chr14:33403881..33403924,+!p1@NPAS3!1.78!59.71!NPAS3;;chr8:40755333..40755352,-!p1@ZMAT4!1.78!58.70!ZMAT4;;chr7:14028743..14028799,-!p3@ETV1!1.73!66.06!ETV1;;chr9:126774058..126774081,+!p3@LHX2!1.68!47.01!LHX2;;chr9:126773880..126773895,+!p2@LHX2!1.68!46.50!LHX2;;chr4:57547751..57547764,-!p6@HOPX!1.67!45.48!HOPX;;chr17:70117153..70117174,+!p1@SOX9!1.66!434.50!SOX9;;chr3:147127142..147127168,+!p1@ZIC1!1.64!42.94!ZIC1;;chr12:103351444..103351461,+!p1@ASCL1!1.63!41.67!ASCL1;;chr6:19837592..19837621,+!p1@ID4!1.61!232.50!ID4;;chr20:20348740..20348757,+!p1@INSM1!1.60!39.13!INSM1;;chr13:95364784..95364806,-!p1@SOX21!1.58!37.10!SOX21;;chr12:106976774..106976788,+!p1@RFX4!1.57!35.83!RFX4;;chr14:29236301..29236317,+!p5@FOXG1!1.56!35.32!FOXG1;;chr1:42384532..42384603,-!p2@HIVEP3!1.56!35.32!HIVEP3;;chrX:82763292..82763317,+!p1@POU3F4!1.55!34.30!POU3F4;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.54!34.05!POU3F3;;chr21:34442439..34442455,+!p1@OLIG1!1.53!32.52!OLIG1;;chr13:72441315..72441454,-!p1@DACH1!1.52!63.52!DACH1;;chr1:151032922..151032951,+!p2@MLLT11!1.51!51.84!MLLT11;;chr1:50889103..50889145,-!p1@DMRTA2!1.49!30.24!DMRTA2;;chr16:51185318..51185348,-!p2@SALL1!1.48!28.97!SALL1;;chr2:63277978..63277995,+!p2@OTX1!1.47!28.46!OTX1;;chr13:100634031..100634045,+!p1@ZIC2!1.46!27.95!ZIC2;;chr18:53068911..53068935,-!p4@TCF4!1.45!30.75!TCF4;;chr21:34398234..34398250,+!p1@OLIG2!1.43!25.92!OLIG2;;chr1:214161272..214161322,+!p1@PROX1!1.41!34.56!PROX1;;chr10:119302232..119302265,+!p1@EMX2!1.41!24.90!EMX2;;chr12:106976837..106976850,+!p5@RFX4!1.41!24.65!RFX4;;chr3:147127177..147127194,+!p2@ZIC1!1.41!24.65!ZIC1;;chr7:14028488..14028516,-!p2@ETV1!1.39!25.66!ETV1;;chr7:96654133..96654150,-!p1@DLX5!1.39!23.63!DLX5;;chr1:2461692..2461710,-!p1@HES5!1.38!22.87!HES5;;chr7:42276787..42276815,-!p1@GLI3!1.35!55.65!GLI3;;chr19:13134772..13134822,+!p2@NFIX!1.33!29.47!NFIX;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.33!20.58!PEG3;;chr1:2985760..2985774,+!p1@PRDM16!1.33!20.58!PRDM16;;chr9:126774091..126774098,+!p4@LHX2!1.33!20.58!LHX2;;chr12:24102576..24102623,-!p2@SOX5!1.33!20.33!SOX5;;chr11:31832862..31832884,-!p2@PAX6!1.32!19.82!PAX6;;chr13:72441074..72441172,-!p2@DACH1!1.32!19.82!DACH1;;chr15:42749722..42749739,-!p2@ZFP106!1.31!34.81!ZFP106;;chr15:80696703..80696754,+!p1@ARNT2!1.31!25.66!ARNT2;;chr13:100623375..100623425,-!p1@ZIC5!1.31!19.31!ZIC5;;chr7:14029283..14029311,-!p1@ETV1!1.29!96.30!ETV1;;chr2:172949484..172949522,+!p1@DLX1!1.29!18.55!DLX1;;chr12:103352277..103352324,+!p2@ASCL1!1.29!18.29!ASCL1;;chr9:14314131..14314147,-!p2@NFIB!1.28!98.08!NFIB;;chr11:31832610..31832639,-!p5@PAX6!1.28!18.04!PAX6;;chr14:29237009..29237049,+!p4@FOXG1!1.28!18.04!FOXG1;;chr12:106976678..106976708,+!p2@RFX4!1.27!17.53!RFX4;;chr6:99282592..99282616,+!p3@POU3F2!1.27!17.53!POU3F2;;chr8:60031682..60031710,-!p2@TOX!1.25!26.93!TOX;;chr21:34442540..34442560,+!p2@OLIG1!1.24!16.26!OLIG1;;chr2:105470614..105470625,+!p@chr2:105470614..105470625,+!1.24!16.26!POU3F3;;chr2:172967621..172967637,-!p1@DLX2!1.23!42.43!DLX2;;chr4:57522598..57522664,-!p3@HOPX!1.23!16.01!HOPX;;chr18:42260920..42260951,+!p4@SETBP1!1.22!15.75!SETBP1;;chr7:20826504..20826526,-!p1@SP8!1.21!15.25!SP8;;chr10:119303078..119303169,+!p2@EMX2!1.21!15.25!EMX2;;chr7:14026022..14026044,-!p7@ETV1!1.20!14.74!ETV1;;chr7:14029312..14029325,-!p4@ETV1!1.19!18.04!ETV1;;chr1:23696448..23696453,-!p5@ZNF436!1.18!17.28!ZNF436;;chr9:77112244..77112262,+!p1@RORB!1.18!15.75!RORB;;chr10:31610110..31610159,+!p2@ZEB1!1.18!14.23!ZEB1;;chr11:31832807..31832823,-!p4@PAX6!1.18!14.23!PAX6;;chr11:31839488..31839515,-!p3@PAX6!1.18!14.23!PAX6;;chr2:5832508..5832524,+!p1@SOX11!1.18!13.98!SOX11;;chr16:1031762..1031781,+!p1@SOX8!1.18!13.98!SOX8;;chr14:73360799..73360817,-!p1@DPF3!1.17!47.77!DPF3;;chr8:80679993..80680011,-!p1@HEY1!1.17!19.82!HEY1;;chr18:42260840..42260860,+!p2@SETBP1!1.17!13.72!SETBP1;;chr1:61548374..61548415,+!p4@NFIA!1.14!23.88!NFIA;;chr15:57511589..57511608,+!p4@TCF12!1.14!12.96!TCF12;;chr20:55204351..55204377,+!p1@TFAP2C!1.13!15.75!TFAP2C;;chr6:126070769..126070801,+!p1@HEY2!1.13!14.48!HEY2;;chr1:151032860..151032918,+!p1@MLLT11!1.12!143.31!MLLT11;;chr14:21994337..21994442,-!p1@SALL2!1.11!33.29!SALL2;;chr8:60031934..60031986,-!p6@TOX!1.09!11.43!TOX;;chr5:88081308..88081333,-!p8@MEF2C!1.09!11.18!MEF2C;;chr6:99282570..99282591,+!p4@POU3F2!1.09!11.18!POU3F2;;chr4:57547870..57547873,-!p11@HOPX!1.09!11.18!HOPX;;chr8:60031619..60031676,-!p1@TOX!1.08!23.88!TOX;;chrX:84498989..84499003,+!p1@ZNF711!1.08!15.25!ZNF711;;chr3:185826855..185826911,-!p1@ETV5!1.07!295.51!ETV5;;chr3:147111231..147111281,+!p3@ZIC1!1.07!10.67!ZIC1;;chr4:57522513..57522548,-!p4@HOPX!1.07!10.67!HOPX;;chr13:95364761..95364780,-!p2@SOX21!1.07!10.67!SOX21;;chr11:31832687..31832704,-!p6@PAX6!1.06!10.42!PAX6;;chr13:112721457..112721482,+!p1@SOX1!1.06!10.42!SOX1;;chr7:14026063..14026091,-!p10@ETV1!1.06!10.42!ETV1;;chr1:167298300..167298319,+!p2@POU2F1!1.05!10.16!POU2F1;;chr10:31608127..31608156,+!p1@ZEB1!1.04!184.22!ZEB1;;chr1:61330997..61331017,+!p17@NFIA!1.04!9.91!NFIA;;chr10:119302645..119302712,+!p3@EMX2!1.03!9.66!EMX2;;chr17:47892398..47892407,+!p2@KAT7!1.03!9.66!KAT7;;chr7:28725740..28725778,+!p1@CREB5!1.02!85.63!CREB5;;chr7:42192043..42192057,-!p10@GLI3!1.02!9.40!GLI3;;chr2:105470599..105470610,+!p@chr2:105470599..105470610,+!1.02!9.40!POU3F3;;chr2:105470714..105470723,+!p@chr2:105470714..105470723,+!1.02!9.40!POU3F3;;chr8:77593474..77593612,+!p1@ZFHX4!1.01!39.89!ZFHX4;;chr2:172950227..172950249,+!p2@DLX1!1.01!9.15!DLX1;;chr3:21792682..21792720,-!p1@ZNF385D!1.01!9.15!ZNF385D;;chr4:57547820..57547829,-!p8@HOPX!1.01!9.15!HOPX;;chr14:33403648..33403710,+!p3@NPAS3!1.01!9.15!NPAS3;;chr11:31832581..31832601,-!p7@PAX6!1.00!8.89!PAX6;;chr6:99282475..99282501,+!p1@POU3F2!1.00!8.89!POU3F2;;chr19:19976683..19976709,+!p1@ZNF253!0.99!39.38!ZNF253;;chrX:84499081..84499115,+!p2@ZNF711!0.99!13.21!ZNF711;;chr18:22932080..22932170,-!p1@ZNF521!0.98!37.35!ZNF521;;chr16:51185149..51185160,-!p5@SALL1!0.98!8.64!SALL1;;chr1:42384486..42384501,-!p6@HIVEP3!0.98!8.64!HIVEP3;;chr11:16627528..16627550,-!p7@SOX6!0.98!8.64!SOX6;;chr11:16627614..16627651,-!p4@SOX6!0.98!8.64!SOX6;;chr14:29236510..29236521,+!p9@FOXG1!0.98!8.64!FOXG1;;chr18:56531584..56531646,+!p4@ZNF532!0.97!11.18!ZNF532;;chr14:29236460..29236467,+!p12@FOXG1!0.97!8.39!FOXG1;;chr7:14025816..14025842,-!p9@ETV1!0.97!8.39!ETV1;;chr15:37392724..37392757,-!p1@MEIS2!0.96!38.11!MEIS2;;chr17:41623692..41623715,-!p1@ETV4!0.96!35.83!ETV4;;chr6:99283040..99283063,+!p5@POU3F2!0.96!8.13!POU3F2;;chrX:136648279..136648295,+!p1@ZIC3!0.96!8.13!ZIC3;;chr1:151032957..151032968,+!p7@MLLT11!0.96!8.13!MLLT11;;chr12:24103844..24103880,-!p3@SOX5!0.96!8.13!SOX5;;chr18:56532100..56532130,+!p1@ZNF532!0.95!14.74!ZNF532;;chr12:125003087..125003141,-!p4@NCOR2!0.95!10.16!NCOR2;;chrX:136648643..136648711,+!p2@ZIC3!0.95!7.88!ZIC3;;chr7:14025855..14025890,-!p6@ETV1!0.95!7.88!ETV1;;chr2:5832493..5832507,+!p2@SOX11!0.95!7.88!SOX11;;chr19:22034809..22034878,-!p2@ZNF43!0.94!28.20!ZNF43;;chr6:91006518..91006570,-!p1@BACH2!0.94!18.29!BACH2;;chr12:24715376..24715432,-!p1@SOX5!0.94!9.91!SOX5;;chr13:100634004..100634025,+!p2@ZIC2!0.94!7.62!ZIC2;;chr13:28366616..28366622,+!p1@GSX1!0.94!7.62!GSX1;;chr9:14313893..14313908,-!p7@NFIB!0.93!10.93!NFIB;;chr1:164528687..164528711,+!p6@PBX1!0.93!8.89!PBX1;;chr1:23857325..23857416,-!p2@E2F2!0.92!8.64!E2F2;;chr4:57522166..57522260,-!p2@HOPX!0.92!8.39!HOPX;;chr3:114173720..114173794,-!p6@ZBTB20!0.92!7.37!ZBTB20;;chr20:55205825..55205847,+!p2@TFAP2C!0.92!7.37!TFAP2C;;chrX:139587228..139587234,-!p1@SOX3!0.92!7.37!SOX3;;chr9:14314106..14314119,-!p5@NFIB!0.91!13.21!NFIB;;chr3:114173654..114173696,-!p12@ZBTB20!0.91!7.11!ZBTB20;;chr4:57547773..57547780,-!p12@HOPX!0.91!7.11!HOPX;;chr19:58545454..58545498,+!p1@ZSCAN1!0.91!7.11!ZSCAN1;;chr7:42276822..42276895,-!p2@GLI3!0.90!21.60!GLI3;;chr1:61547894..61547968,+!p2@NFIA!0.90!21.09!NFIA;;chr2:25475120..25475176,-!p2@DNMT3A!0.90!9.40!DNMT3A;;chr6:99282438..99282457,+!p2@POU3F2!0.90!6.86!POU3F2;;chr10:119302268..119302282,+!p4@EMX2!0.90!6.86!EMX2;;chr19:57352109..57352153,-!p2@ZIM2!0.90!6.86!ZIM2;;chr19:23299851..23299880,+!p2@ZNF730!0.90!6.86!ZNF730;;chr14:21994449..21994524,-!p2@SALL2!0.89!20.84!SALL2;;chr12:26277817..26277863,-!p2@BHLHE41!0.89!9.40!BHLHE41;;chr19:23433144..23433204,-!p1@ZNF724P!0.88!30.75!ZNF724P;;chr19:38720294..38720348,-!p1@DPF1!0.88!8.39!DPF1;;chrX:82763265..82763283,+!p2@POU3F4!0.88!6.61!POU3F4;;chr14:33403860..33403874,+!p5@NPAS3!0.88!6.61!NPAS3;;chr6:21593973..21593988,+!p1@SOX4!0.87!244.95!SOX4;;chr14:33403930..33403943,+!p7@NPAS3!0.87!6.35!NPAS3;;chr1:40105299..40105326,-!p1@HEYL!0.87!6.35!HEYL;;chr3:181429641..181429650,+!p3@SOX2!0.87!6.35!SOX2;;chr9:14308004..14308041,-!p14@NFIB!0.87!6.35!NFIB;;chr1:59249732..59249749,-!p2@JUN!0.86!80.80!JUN;;chr11:16629261..16629284,-!p1@SOX6!0.85!6.10!SOX6;;chr22:38380543..38380569,-!p1@SOX10!0.85!6.10!SOX10;;chr18:22932004..22932021,-!p2@ZNF521!0.85!6.10!ZNF521;;chr19:13135582..13135600,+!p3@NFIX!0.85!6.10!NFIX;;chr5:88178983..88179012,-!p1@MEF2C!0.84!49.04!MEF2C;;chr5:124082279..124082319,-!p3@ZNF6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| |expression_enrichment_score=chr15:57511609..57511651,+!p2@TCF12!2.44!446.95!TCF12;;chr4:57547454..57547469,-!p1@HOPX!2.42!264.26!HOPX;;chr1:23696348..23696363,-!p4@ZNF436!2.40!282.81!ZNF436;;chr14:29234581..29234601,+!p2@FOXG1!2.36!229.19!FOXG1;;chr3:181429704..181429722,+!p1@SOX2!2.34!216.23!SOX2;;chrX:25034067..25034088,-!p1@ARX!2.23!168.72!ARX;;chr9:126774018..126774055,+!p1@LHX2!2.19!153.73!LHX2;;chr14:29235961..29236008,+!p1@FOXG1!2.18!150.42!FOXG1;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!2.14!135.94!POU3F3;;chr16:51185172..51185197,-!p1@SALL1!2.08!117.90!SALL1;;chr14:29236269..29236285,+!p3@FOXG1!2.02!103.16!FOXG1;;chr3:181429741..181429767,+!p2@SOX2!2.01!101.13!SOX2;;chr7:100065686..100065701,-!p2@TSC22D4!1.96!90.71!TSC22D4;;chr11:31832658..31832681,-!p1@PAX6!1.91!80.55!PAX6;;chr1:23696308..23696339,-!p2@ZNF436!1.89!158.05!ZNF436;;chr2:63277948..63277974,+!p1@OTX1!1.86!71.15!OTX1;;chr14:33403881..33403924,+!p1@NPAS3!1.78!59.71!NPAS3;;chr8:40755333..40755352,-!p1@ZMAT4!1.78!58.70!ZMAT4;;chr7:14028743..14028799,-!p3@ETV1!1.73!66.06!ETV1;;chr9:126774058..126774081,+!p3@LHX2!1.68!47.01!LHX2;;chr9:126773880..126773895,+!p2@LHX2!1.68!46.50!LHX2;;chr4:57547751..57547764,-!p6@HOPX!1.67!45.48!HOPX;;chr17:70117153..70117174,+!p1@SOX9!1.66!434.50!SOX9;;chr3:147127142..147127168,+!p1@ZIC1!1.64!42.94!ZIC1;;chr12:103351444..103351461,+!p1@ASCL1!1.63!41.67!ASCL1;;chr6:19837592..19837621,+!p1@ID4!1.61!232.50!ID4;;chr20:20348740..20348757,+!p1@INSM1!1.60!39.13!INSM1;;chr13:95364784..95364806,-!p1@SOX21!1.58!37.10!SOX21;;chr12:106976774..106976788,+!p1@RFX4!1.57!35.83!RFX4;;chr14:29236301..29236317,+!p5@FOXG1!1.56!35.32!FOXG1;;chr1:42384532..42384603,-!p2@HIVEP3!1.56!35.32!HIVEP3;;chrX:82763292..82763317,+!p1@POU3F4!1.55!34.30!POU3F4;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.54!34.05!POU3F3;;chr21:34442439..34442455,+!p1@OLIG1!1.53!32.52!OLIG1;;chr13:72441315..72441454,-!p1@DACH1!1.52!63.52!DACH1;;chr1:151032922..151032951,+!p2@MLLT11!1.51!51.84!MLLT11;;chr1:50889103..50889145,-!p1@DMRTA2!1.49!30.24!DMRTA2;;chr16:51185318..51185348,-!p2@SALL1!1.48!28.97!SALL1;;chr2:63277978..63277995,+!p2@OTX1!1.47!28.46!OTX1;;chr13:100634031..100634045,+!p1@ZIC2!1.46!27.95!ZIC2;;chr18:53068911..53068935,-!p4@TCF4!1.45!30.75!TCF4;;chr21:34398234..34398250,+!p1@OLIG2!1.43!25.92!OLIG2;;chr1:214161272..214161322,+!p1@PROX1!1.41!34.56!PROX1;;chr10:119302232..119302265,+!p1@EMX2!1.41!24.90!EMX2;;chr12:106976837..106976850,+!p5@RFX4!1.41!24.65!RFX4;;chr3:147127177..147127194,+!p2@ZIC1!1.41!24.65!ZIC1;;chr7:14028488..14028516,-!p2@ETV1!1.39!25.66!ETV1;;chr7:96654133..96654150,-!p1@DLX5!1.39!23.63!DLX5;;chr1:2461692..2461710,-!p1@HES5!1.38!22.87!HES5;;chr7:42276787..42276815,-!p1@GLI3!1.35!55.65!GLI3;;chr19:13134772..13134822,+!p2@NFIX!1.33!29.47!NFIX;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.33!20.58!PEG3;;chr1:2985760..2985774,+!p1@PRDM16!1.33!20.58!PRDM16;;chr9:126774091..126774098,+!p4@LHX2!1.33!20.58!LHX2;;chr12:24102576..24102623,-!p2@SOX5!1.33!20.33!SOX5;;chr11:31832862..31832884,-!p2@PAX6!1.32!19.82!PAX6;;chr13:72441074..72441172,-!p2@DACH1!1.32!19.82!DACH1;;chr15:42749722..42749739,-!p2@ZFP106!1.31!34.81!ZFP106;;chr15:80696703..80696754,+!p1@ARNT2!1.31!25.66!ARNT2;;chr13:100623375..100623425,-!p1@ZIC5!1.31!19.31!ZIC5;;chr7:14029283..14029311,-!p1@ETV1!1.29!96.30!ETV1;;chr2:172949484..172949522,+!p1@DLX1!1.29!18.55!DLX1;;chr12:103352277..103352324,+!p2@ASCL1!1.29!18.29!ASCL1;;chr9:14314131..14314147,-!p2@NFIB!1.28!98.08!NFIB;;chr11:31832610..31832639,-!p5@PAX6!1.28!18.04!PAX6;;chr14:29237009..29237049,+!p4@FOXG1!1.28!18.04!FOXG1;;chr12:106976678..106976708,+!p2@RFX4!1.27!17.53!RFX4;;chr6:99282592..99282616,+!p3@POU3F2!1.27!17.53!POU3F2;;chr8:60031682..60031710,-!p2@TOX!1.25!26.93!TOX;;chr21:34442540..34442560,+!p2@OLIG1!1.24!16.26!OLIG1;;chr2:105470614..105470625,+!p@chr2:105470614..105470625,+!1.24!16.26!POU3F3;;chr2:172967621..172967637,-!p1@DLX2!1.23!42.43!DLX2;;chr4:57522598..57522664,-!p3@HOPX!1.23!16.01!HOPX;;chr18:42260920..42260951,+!p4@SETBP1!1.22!15.75!SETBP1;;chr7:20826504..20826526,-!p1@SP8!1.21!15.25!SP8;;chr10:119303078..119303169,+!p2@EMX2!1.21!15.25!EMX2;;chr7:14026022..14026044,-!p7@ETV1!1.20!14.74!ETV1;;chr7:14029312..14029325,-!p4@ETV1!1.19!18.04!ETV1;;chr1:23696448..23696453,-!p5@ZNF436!1.18!17.28!ZNF436;;chr9:77112244..77112262,+!p1@RORB!1.18!15.75!RORB;;chr10:31610110..31610159,+!p2@ZEB1!1.18!14.23!ZEB1;;chr11:31832807..31832823,-!p4@PAX6!1.18!14.23!PAX6;;chr11:31839488..31839515,-!p3@PAX6!1.18!14.23!PAX6;;chr2:5832508..5832524,+!p1@SOX11!1.18!13.98!SOX11;;chr16:1031762..1031781,+!p1@SOX8!1.18!13.98!SOX8;;chr14:73360799..73360817,-!p1@DPF3!1.17!47.77!DPF3;;chr8:80679993..80680011,-!p1@HEY1!1.17!19.82!HEY1;;chr18:42260840..42260860,+!p2@SETBP1!1.17!13.72!SETBP1;;chr1:61548374..61548415,+!p4@NFIA!1.14!23.88!NFIA;;chr15:57511589..57511608,+!p4@TCF12!1.14!12.96!TCF12;;chr20:55204351..55204377,+!p1@TFAP2C!1.13!15.75!TFAP2C;;chr6:126070769..126070801,+!p1@HEY2!1.13!14.48!HEY2;;chr1:151032860..151032918,+!p1@MLLT11!1.12!143.31!MLLT11;;chr14:21994337..21994442,-!p1@SALL2!1.11!33.29!SALL2;;chr8:60031934..60031986,-!p6@TOX!1.09!11.43!TOX;;chr5:88081308..88081333,-!p8@MEF2C!1.09!11.18!MEF2C;;chr6:99282570..99282591,+!p4@POU3F2!1.09!11.18!POU3F2;;chr4:57547870..57547873,-!p11@HOPX!1.09!11.18!HOPX;;chr8:60031619..60031676,-!p1@TOX!1.08!23.88!TOX;;chrX:84498989..84499003,+!p1@ZNF711!1.08!15.25!ZNF711;;chr3:185826855..185826911,-!p1@ETV5!1.07!295.51!ETV5;;chr3:147111231..147111281,+!p3@ZIC1!1.07!10.67!ZIC1;;chr4:57522513..57522548,-!p4@HOPX!1.07!10.67!HOPX;;chr13:95364761..95364780,-!p2@SOX21!1.07!10.67!SOX21;;chr11:31832687..31832704,-!p6@PAX6!1.06!10.42!PAX6;;chr13:112721457..112721482,+!p1@SOX1!1.06!10.42!SOX1;;chr7:14026063..14026091,-!p10@ETV1!1.06!10.42!ETV1;;chr1:167298300..167298319,+!p2@POU2F1!1.05!10.16!POU2F1;;chr10:31608127..31608156,+!p1@ZEB1!1.04!184.22!ZEB1;;chr1:61330997..61331017,+!p17@NFIA!1.04!9.91!NFIA;;chr10:119302645..119302712,+!p3@EMX2!1.03!9.66!EMX2;;chr17:47892398..47892407,+!p2@KAT7!1.03!9.66!KAT7;;chr7:28725740..28725778,+!p1@CREB5!1.02!85.63!CREB5;;chr7:42192043..42192057,-!p10@GLI3!1.02!9.40!GLI3;;chr2:105470599..105470610,+!p@chr2:105470599..105470610,+!1.02!9.40!POU3F3;;chr2:105470714..105470723,+!p@chr2:105470714..105470723,+!1.02!9.40!POU3F3;;chr8:77593474..77593612,+!p1@ZFHX4!1.01!39.89!ZFHX4;;chr2:172950227..172950249,+!p2@DLX1!1.01!9.15!DLX1;;chr3:21792682..21792720,-!p1@ZNF385D!1.01!9.15!ZNF385D;;chr4:57547820..57547829,-!p8@HOPX!1.01!9.15!HOPX;;chr14:33403648..33403710,+!p3@NPAS3!1.01!9.15!NPAS3;;chr11:31832581..31832601,-!p7@PAX6!1.00!8.89!PAX6;;chr6:99282475..99282501,+!p1@POU3F2!1.00!8.89!POU3F2;;chr19:19976683..19976709,+!p1@ZNF253!0.99!39.38!ZNF253;;chrX:84499081..84499115,+!p2@ZNF711!0.99!13.21!ZNF711;;chr18:22932080..22932170,-!p1@ZNF521!0.98!37.35!ZNF521;;chr16:51185149..51185160,-!p5@SALL1!0.98!8.64!SALL1;;chr1:42384486..42384501,-!p6@HIVEP3!0.98!8.64!HIVEP3;;chr11:16627528..16627550,-!p7@SOX6!0.98!8.64!SOX6;;chr11:16627614..16627651,-!p4@SOX6!0.98!8.64!SOX6;;chr14:29236510..29236521,+!p9@FOXG1!0.98!8.64!FOXG1;;chr18:56531584..56531646,+!p4@ZNF532!0.97!11.18!ZNF532;;chr14:29236460..29236467,+!p12@FOXG1!0.97!8.39!FOXG1;;chr7:14025816..14025842,-!p9@ETV1!0.97!8.39!ETV1;;chr15:37392724..37392757,-!p1@MEIS2!0.96!38.11!MEIS2;;chr17:41623692..41623715,-!p1@ETV4!0.96!35.83!ETV4;;chr6:99283040..99283063,+!p5@POU3F2!0.96!8.13!POU3F2;;chrX:136648279..136648295,+!p1@ZIC3!0.96!8.13!ZIC3;;chr1:151032957..151032968,+!p7@MLLT11!0.96!8.13!MLLT11;;chr12:24103844..24103880,-!p3@SOX5!0.96!8.13!SOX5;;chr18:56532100..56532130,+!p1@ZNF532!0.95!14.74!ZNF532;;chr12:125003087..125003141,-!p4@NCOR2!0.95!10.16!NCOR2;;chrX:136648643..136648711,+!p2@ZIC3!0.95!7.88!ZIC3;;chr7:14025855..14025890,-!p6@ETV1!0.95!7.88!ETV1;;chr2:5832493..5832507,+!p2@SOX11!0.95!7.88!SOX11;;chr19:22034809..22034878,-!p2@ZNF43!0.94!28.20!ZNF43;;chr6:91006518..91006570,-!p1@BACH2!0.94!18.29!BACH2;;chr12:24715376..24715432,-!p1@SOX5!0.94!9.91!SOX5;;chr13:100634004..100634025,+!p2@ZIC2!0.94!7.62!ZIC2;;chr13:28366616..28366622,+!p1@GSX1!0.94!7.62!GSX1;;chr9:14313893..14313908,-!p7@NFIB!0.93!10.93!NFIB;;chr1:164528687..164528711,+!p6@PBX1!0.93!8.89!PBX1;;chr1:23857325..23857416,-!p2@E2F2!0.92!8.64!E2F2;;chr4:57522166..57522260,-!p2@HOPX!0.92!8.39!HOPX;;chr3:114173720..114173794,-!p6@ZBTB20!0.92!7.37!ZBTB20;;chr20:55205825..55205847,+!p2@TFAP2C!0.92!7.37!TFAP2C;;chrX:139587228..139587234,-!p1@SOX3!0.92!7.37!SOX3;;chr9:14314106..14314119,-!p5@NFIB!0.91!13.21!NFIB;;chr3:114173654..114173696,-!p12@ZBTB20!0.91!7.11!ZBTB20;;chr4:57547773..57547780,-!p12@HOPX!0.91!7.11!HOPX;;chr19:58545454..58545498,+!p1@ZSCAN1!0.91!7.11!ZSCAN1;;chr7:42276822..42276895,-!p2@GLI3!0.90!21.60!GLI3;;chr1:61547894..61547968,+!p2@NFIA!0.90!21.09!NFIA;;chr2:25475120..25475176,-!p2@DNMT3A!0.90!9.40!DNMT3A;;chr6:99282438..99282457,+!p2@POU3F2!0.90!6.86!POU3F2;;chr10:119302268..119302282,+!p4@EMX2!0.90!6.86!EMX2;;chr19:57352109..57352153,-!p2@ZIM2!0.90!6.86!ZIM2;;chr19:23299851..23299880,+!p2@ZNF730!0.90!6.86!ZNF730;;chr14:21994449..21994524,-!p2@SALL2!0.89!20.84!SALL2;;chr12:26277817..26277863,-!p2@BHLHE41!0.89!9.40!BHLHE41;;chr19:23433144..23433204,-!p1@ZNF724P!0.88!30.75!ZNF724P;;chr19:38720294..38720348,-!p1@DPF1!0.88!8.39!DPF1;;chrX:82763265..82763283,+!p2@POU3F4!0.88!6.61!POU3F4;;chr14:33403860..33403874,+!p5@NPAS3!0.88!6.61!NPAS3;;chr6:21593973..21593988,+!p1@SOX4!0.87!244.95!SOX4;;chr14:33403930..33403943,+!p7@NPAS3!0.87!6.35!NPAS3;;chr1:40105299..40105326,-!p1@HEYL!0.87!6.35!HEYL;;chr3:181429641..181429650,+!p3@SOX2!0.87!6.35!SOX2;;chr9:14308004..14308041,-!p14@NFIB!0.87!6.35!NFIB;;chr1:59249732..59249749,-!p2@JUN!0.86!80.80!JUN;;chr11:16629261..16629284,-!p1@SOX6!0.85!6.10!SOX6;;chr22:38380543..38380569,-!p1@SOX10!0.85!6.10!SOX10;;chr18:22932004..22932021,-!p2@ZNF521!0.85!6.10!ZNF521;;chr19:13135582..13135600,+!p3@NFIX!0.85!6.10!NFIX;;chr5:88178983..88179012,-!p1@MEF2C!0.84!49.04!MEF2C;;chr5:124082279..124082319,-!p3@ZNF6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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000034;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000047;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002319;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016 | |||
|ffid_belonging_in_development=CL:0000133,CL:0000221 | |ffid_belonging_in_development=CL:0000133,CL:0000221 | ||
|fonse_cell_line= | |fonse_cell_line= | ||
Line 41: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Neural%2520stem%2520cells%252c%2520donor1.CNhs11063.11275-116H6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Neural%2520stem%2520cells%252c%2520donor1.CNhs11063.11275-116H6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Neural%2520stem%2520cells%252c%2520donor1.CNhs11063.11275-116H6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Neural%2520stem%2520cells%252c%2520donor1.CNhs11063.11275-116H6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Neural%2520stem%2520cells%252c%2520donor1.CNhs11063.11275-116H6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11275-116H6 | |id=FF:11275-116H6 | ||
|is_a=EFO:0002091;;FF:0000120 | |is_a=EFO:0002091;;FF:0000120 | ||
Line 46: | Line 54: | ||
|library_id=CNhs11063 | |library_id=CNhs11063 | ||
|library_id_phase_based=2:CNhs11063 | |library_id_phase_based=2:CNhs11063 | ||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11275 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11275 | |||
|name=Neural stem cells, donor1 | |name=Neural stem cells, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 53: | Line 65: | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10011,,, | |profile_srnaseq=SRhi10011,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| ||
Line 67: | Line 80: | ||
|rna_tube_id=116H6 | |rna_tube_id=116H6 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10011.ATGTCA | |||
|sample_age=embryo 19week | |sample_age=embryo 19week | ||
|sample_category=primary cells | |sample_category=primary cells | ||
Line 90: | Line 104: | ||
|top_motifs=SOX2:3.66571068404;NKX2-3_NKX2-5:3.06998979594;NANOG:2.67442529317;TFDP1:2.66160994633;OCT4_SOX2{dimer}:2.5288807038;LHX3,4:2.34653633445;NKX6-1,2:2.28296011166;MZF1:2.24368282868;SOX17:2.24020477599;MYFfamily:2.18492828658;GFI1:2.10544568573;MTE{core}:2.07802644338;PRRX1,2:2.06240658081;LEF1_TCF7_TCF7L1,2:2.03262860607;PAX8:1.90199128316;ZFP161:1.87774852365;T:1.84457358013;PAX5:1.84256204199;NHLH1,2:1.77394501268;VSX1,2:1.74165419776;RFX1:1.64355882103;CUX2:1.61999395149;NKX2-1,4:1.55226481809;POU5F1:1.52207068311;SOX{8,9,10}:1.52040326273;CDC5L:1.51963622213;STAT1,3:1.49064680128;EGR1..3:1.49031477055;PBX1:1.48880767643;SPZ1:1.47596954456;HAND1,2:1.46736973839;JUN:1.45425027313;RBPJ:1.4380684454;MED-1{core}:1.40906202081;MAZ:1.37963549353;GTF2I:1.37515471727;ZBTB6:1.37107187296;HIC1:1.36313709014;DBP:1.25173552455;PATZ1:1.23256007412;RREB1:1.23111706531;ZNF384:1.22506616406;GFI1B:1.19238564044;PRDM1:1.14396851406;TFAP2B:1.07976259378;GATA4:1.03834633443;SMAD1..7,9:0.990353214642;YY1:0.980321496325;PAX6:0.954895863967;POU6F1:0.944222639324;ZIC1..3:0.938188572876;E2F1..5:0.91229803543;RFX2..5_RFXANK_RFXAP:0.902432382313;KLF4:0.868445279304;ALX1:0.858657307908;EBF1:0.855673812723;FOXM1:0.842289230801;HOX{A4,D4}:0.841955497138;ADNP_IRX_SIX_ZHX:0.831718449874;BPTF:0.827491938592;NR3C1:0.814260096623;CRX:0.809907143819;REST:0.747433042348;TEF:0.733564926133;TFCP2:0.730458195681;NRF1:0.726694999856;PAX4:0.706251462673;IKZF1:0.706126740658;GZF1:0.682098766163;POU3F1..4:0.674676432659;EP300:0.659275919839;NFY{A,B,C}:0.641686734317;BREu{core}:0.640294721517;TGIF1:0.633906955218;NR1H4:0.6087269291;GCM1,2:0.599021649965;ONECUT1,2:0.598049416929;ATF2:0.594157444974;TLX1..3_NFIC{dimer}:0.589350138458;GTF2A1,2:0.56341042693;ZNF423:0.540680181666;ZNF143:0.530442017305;PAX3,7:0.478760645533;SOX5:0.470545764804;AHR_ARNT_ARNT2:0.449627698945;HSF1,2:0.396843249671;HOXA9_MEIS1:0.365894123105;FOXN1:0.354958500822;PDX1:0.347800021818;MYB:0.325921275858;NKX3-2:0.31729778833;NFE2L2:0.272889640994;NANOG{mouse}:0.2649477524;FOXP3:0.249936483282;MYBL2:0.24895704448;NFE2L1:0.247338088974;RORA:0.226625246002;TLX2:0.2060302155;NFIX:0.204309702074;LMO2:0.194843075866;ELK1,4_GABP{A,B1}:0.159938840216;HBP1_HMGB_SSRP1_UBTF:0.159384259375;PAX1,9:0.155435503713;TOPORS:0.150915480208;TFAP2{A,C}:0.127209912958;MYOD1:0.110378439685;XCPE1{core}:0.0917630659743;MTF1:0.0904777741077;HOX{A5,B5}:0.0854784352603;FOXD3:0.0707577473396;CREB1:0.0471387061914;MAFB:0.0390303412758;UFEwm:0.0350813924913;TBX4,5:0.0234712643571;TP53:0.00912241888313;STAT2,4,6:-0.00316673163496;HMX1:-0.011172793339;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0155517814305;NFIL3:-0.029875556221;AR:-0.0382916734939;IKZF2:-0.0857231259124;SREBF1,2:-0.101354934669;HNF1A:-0.137868134751;EVI1:-0.143300506321;NFE2:-0.181759839464;CDX1,2,4:-0.184758063211;NKX2-2,8:-0.207806708228;FOS_FOS{B,L1}_JUN{B,D}:-0.210079107298;FOXP1:-0.232279353263;ATF4:-0.240610933129;NFATC1..3:-0.257157136154;POU2F1..3:-0.257369193117;POU1F1:-0.268634060533;HNF4A_NR2F1,2:-0.273371507219;BACH2:-0.281453520452;TFAP4:-0.283548371357;DMAP1_NCOR{1,2}_SMARC:-0.292984437662;TBP:-0.336339288394;FOSL2:-0.349901021927;MEF2{A,B,C,D}:-0.386618180139;ESRRA:-0.38852551413;FOXQ1:-0.403247892137;TEAD1:-0.411404935231;ALX4:-0.417726943936;SP1:-0.427207120165;SPIB:-0.43953207009;ELF1,2,4:-0.468434254084;RUNX1..3:-0.47038574292;FOX{D1,D2}:-0.472916699432;ZNF238:-0.491663703526;ATF5_CREB3:-0.498768177291;IRF1,2:-0.510454341688;NR6A1:-0.515846969975;EN1,2:-0.524596726848;NFKB1_REL_RELA:-0.532424942942;GATA6:-0.554952566018;SPI1:-0.577826168395;HMGA1,2:-0.633077815962;ZBTB16:-0.710983857583;PAX2:-0.727747218252;ZNF148:-0.730165173554;SRF:-0.74154253112;IRF7:-0.752256449074;HLF:-0.758169881122;FOX{I1,J2}:-0.768036545455;CEBPA,B_DDIT3:-0.783532575951;bHLH_family:-0.784305022602;FOXA2:-0.784802744445;FOXL1:-0.792346314898;FOX{F1,F2,J1}:-0.807061965593;XBP1:-0.810753091667;ARID5B:-0.827319956722;RXR{A,B,G}:-0.829928387452;ETS1,2:-0.850521484484;HOX{A6,A7,B6,B7}:-0.861966281158;STAT5{A,B}:-0.869034761405;ESR1:-0.885844234579;PPARG:-0.895476849047;SNAI1..3:-0.921858764496;FOXO1,3,4:-1.04365693081;NR5A1,2:-1.07623794714;PITX1..3:-1.09029374828;TAL1_TCF{3,4,12}:-1.10421781094;ATF6:-1.10430672238;ZEB1:-1.11227739523;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.15236042588;HES1:-1.25225562973;RXRA_VDR{dimer}:-1.27833387475;AIRE:-1.47819833318;GLI1..3:-1.61155061464;HIF1A:-1.72972142455;NKX3-1:-1.86838138186 | |top_motifs=SOX2:3.66571068404;NKX2-3_NKX2-5:3.06998979594;NANOG:2.67442529317;TFDP1:2.66160994633;OCT4_SOX2{dimer}:2.5288807038;LHX3,4:2.34653633445;NKX6-1,2:2.28296011166;MZF1:2.24368282868;SOX17:2.24020477599;MYFfamily:2.18492828658;GFI1:2.10544568573;MTE{core}:2.07802644338;PRRX1,2:2.06240658081;LEF1_TCF7_TCF7L1,2:2.03262860607;PAX8:1.90199128316;ZFP161:1.87774852365;T:1.84457358013;PAX5:1.84256204199;NHLH1,2:1.77394501268;VSX1,2:1.74165419776;RFX1:1.64355882103;CUX2:1.61999395149;NKX2-1,4:1.55226481809;POU5F1:1.52207068311;SOX{8,9,10}:1.52040326273;CDC5L:1.51963622213;STAT1,3:1.49064680128;EGR1..3:1.49031477055;PBX1:1.48880767643;SPZ1:1.47596954456;HAND1,2:1.46736973839;JUN:1.45425027313;RBPJ:1.4380684454;MED-1{core}:1.40906202081;MAZ:1.37963549353;GTF2I:1.37515471727;ZBTB6:1.37107187296;HIC1:1.36313709014;DBP:1.25173552455;PATZ1:1.23256007412;RREB1:1.23111706531;ZNF384:1.22506616406;GFI1B:1.19238564044;PRDM1:1.14396851406;TFAP2B:1.07976259378;GATA4:1.03834633443;SMAD1..7,9:0.990353214642;YY1:0.980321496325;PAX6:0.954895863967;POU6F1:0.944222639324;ZIC1..3:0.938188572876;E2F1..5:0.91229803543;RFX2..5_RFXANK_RFXAP:0.902432382313;KLF4:0.868445279304;ALX1:0.858657307908;EBF1:0.855673812723;FOXM1:0.842289230801;HOX{A4,D4}:0.841955497138;ADNP_IRX_SIX_ZHX:0.831718449874;BPTF:0.827491938592;NR3C1:0.814260096623;CRX:0.809907143819;REST:0.747433042348;TEF:0.733564926133;TFCP2:0.730458195681;NRF1:0.726694999856;PAX4:0.706251462673;IKZF1:0.706126740658;GZF1:0.682098766163;POU3F1..4:0.674676432659;EP300:0.659275919839;NFY{A,B,C}:0.641686734317;BREu{core}:0.640294721517;TGIF1:0.633906955218;NR1H4:0.6087269291;GCM1,2:0.599021649965;ONECUT1,2:0.598049416929;ATF2:0.594157444974;TLX1..3_NFIC{dimer}:0.589350138458;GTF2A1,2:0.56341042693;ZNF423:0.540680181666;ZNF143:0.530442017305;PAX3,7:0.478760645533;SOX5:0.470545764804;AHR_ARNT_ARNT2:0.449627698945;HSF1,2:0.396843249671;HOXA9_MEIS1:0.365894123105;FOXN1:0.354958500822;PDX1:0.347800021818;MYB:0.325921275858;NKX3-2:0.31729778833;NFE2L2:0.272889640994;NANOG{mouse}:0.2649477524;FOXP3:0.249936483282;MYBL2:0.24895704448;NFE2L1:0.247338088974;RORA:0.226625246002;TLX2:0.2060302155;NFIX:0.204309702074;LMO2:0.194843075866;ELK1,4_GABP{A,B1}:0.159938840216;HBP1_HMGB_SSRP1_UBTF:0.159384259375;PAX1,9:0.155435503713;TOPORS:0.150915480208;TFAP2{A,C}:0.127209912958;MYOD1:0.110378439685;XCPE1{core}:0.0917630659743;MTF1:0.0904777741077;HOX{A5,B5}:0.0854784352603;FOXD3:0.0707577473396;CREB1:0.0471387061914;MAFB:0.0390303412758;UFEwm:0.0350813924913;TBX4,5:0.0234712643571;TP53:0.00912241888313;STAT2,4,6:-0.00316673163496;HMX1:-0.011172793339;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0155517814305;NFIL3:-0.029875556221;AR:-0.0382916734939;IKZF2:-0.0857231259124;SREBF1,2:-0.101354934669;HNF1A:-0.137868134751;EVI1:-0.143300506321;NFE2:-0.181759839464;CDX1,2,4:-0.184758063211;NKX2-2,8:-0.207806708228;FOS_FOS{B,L1}_JUN{B,D}:-0.210079107298;FOXP1:-0.232279353263;ATF4:-0.240610933129;NFATC1..3:-0.257157136154;POU2F1..3:-0.257369193117;POU1F1:-0.268634060533;HNF4A_NR2F1,2:-0.273371507219;BACH2:-0.281453520452;TFAP4:-0.283548371357;DMAP1_NCOR{1,2}_SMARC:-0.292984437662;TBP:-0.336339288394;FOSL2:-0.349901021927;MEF2{A,B,C,D}:-0.386618180139;ESRRA:-0.38852551413;FOXQ1:-0.403247892137;TEAD1:-0.411404935231;ALX4:-0.417726943936;SP1:-0.427207120165;SPIB:-0.43953207009;ELF1,2,4:-0.468434254084;RUNX1..3:-0.47038574292;FOX{D1,D2}:-0.472916699432;ZNF238:-0.491663703526;ATF5_CREB3:-0.498768177291;IRF1,2:-0.510454341688;NR6A1:-0.515846969975;EN1,2:-0.524596726848;NFKB1_REL_RELA:-0.532424942942;GATA6:-0.554952566018;SPI1:-0.577826168395;HMGA1,2:-0.633077815962;ZBTB16:-0.710983857583;PAX2:-0.727747218252;ZNF148:-0.730165173554;SRF:-0.74154253112;IRF7:-0.752256449074;HLF:-0.758169881122;FOX{I1,J2}:-0.768036545455;CEBPA,B_DDIT3:-0.783532575951;bHLH_family:-0.784305022602;FOXA2:-0.784802744445;FOXL1:-0.792346314898;FOX{F1,F2,J1}:-0.807061965593;XBP1:-0.810753091667;ARID5B:-0.827319956722;RXR{A,B,G}:-0.829928387452;ETS1,2:-0.850521484484;HOX{A6,A7,B6,B7}:-0.861966281158;STAT5{A,B}:-0.869034761405;ESR1:-0.885844234579;PPARG:-0.895476849047;SNAI1..3:-0.921858764496;FOXO1,3,4:-1.04365693081;NR5A1,2:-1.07623794714;PITX1..3:-1.09029374828;TAL1_TCF{3,4,12}:-1.10421781094;ATF6:-1.10430672238;ZEB1:-1.11227739523;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.15236042588;HES1:-1.25225562973;RXRA_VDR{dimer}:-1.27833387475;AIRE:-1.47819833318;GLI1..3:-1.61155061464;HIF1A:-1.72972142455;NKX3-1:-1.86838138186 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11275-116H6;search_select_hide=table117:FF:11275-116H6 | |||
}} | }} |
Latest revision as of 16:30, 3 June 2020
Name: | Neural stem cells, donor1 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11063 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11063
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11063
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.0429 |
10 | 10 | 0.0934 |
100 | 100 | 0.36 |
101 | 101 | 0.734 |
102 | 102 | 0.73 |
103 | 103 | 0.227 |
104 | 104 | 0.133 |
105 | 105 | 0.565 |
106 | 106 | 0.129 |
107 | 107 | 0.693 |
108 | 108 | 0.591 |
109 | 109 | 0.00328 |
11 | 11 | 0.0151 |
110 | 110 | 0.0823 |
111 | 111 | 0.0477 |
112 | 112 | 0.0984 |
113 | 113 | 0.82 |
114 | 114 | 0.00799 |
115 | 115 | 0.749 |
116 | 116 | 0.356 |
117 | 117 | 0.0185 |
118 | 118 | 0.0934 |
119 | 119 | 0.0875 |
12 | 12 | 0.892 |
120 | 120 | 0.961 |
121 | 121 | 0.557 |
122 | 122 | 0.653 |
123 | 123 | 0.247 |
124 | 124 | 0.196 |
125 | 125 | 0.895 |
126 | 126 | 0.113 |
127 | 127 | 0.068 |
128 | 128 | 0.708 |
129 | 129 | 0.417 |
13 | 13 | 0.0182 |
130 | 130 | 0.467 |
131 | 131 | 0.727 |
132 | 132 | 0.742 |
133 | 133 | 0.251 |
134 | 134 | 0.693 |
135 | 135 | 0.791 |
136 | 136 | 0.106 |
137 | 137 | 0.535 |
138 | 138 | 0.396 |
139 | 139 | 0.0176 |
14 | 14 | 0.794 |
140 | 140 | 0.143 |
141 | 141 | 0.661 |
142 | 142 | 0.501 |
143 | 143 | 0.0266 |
144 | 144 | 0.777 |
145 | 145 | 0.865 |
146 | 146 | 0.665 |
147 | 147 | 0.865 |
148 | 148 | 0.269 |
149 | 149 | 0.309 |
15 | 15 | 0.063 |
150 | 150 | 0.321 |
151 | 151 | 0.503 |
152 | 152 | 0.075 |
153 | 153 | 0.951 |
154 | 154 | 0.64 |
155 | 155 | 0.0918 |
156 | 156 | 0.159 |
157 | 157 | 0.706 |
158 | 158 | 0.639 |
159 | 159 | 0.326 |
16 | 16 | 0.0786 |
160 | 160 | 0.086 |
161 | 161 | 0.0764 |
162 | 162 | 0.709 |
163 | 163 | 0.88 |
164 | 164 | 0.00592 |
165 | 165 | 0.615 |
166 | 166 | 0.922 |
167 | 167 | 0.397 |
168 | 168 | 0.599 |
169 | 169 | 0.0133 |
17 | 17 | 0.073 |
18 | 18 | 0.36 |
19 | 19 | 0.29 |
2 | 2 | 0.812 |
20 | 20 | 0.264 |
21 | 21 | 0.125 |
22 | 22 | 0.245 |
23 | 23 | 0.298 |
24 | 24 | 0.611 |
25 | 25 | 0.539 |
26 | 26 | 0.018 |
27 | 27 | 0.64 |
28 | 28 | 0.878 |
29 | 29 | 0.0367 |
3 | 3 | 0.04 |
30 | 30 | 0.813 |
31 | 31 | 0.935 |
32 | 32 | 0.0237 |
33 | 33 | 0.286 |
34 | 34 | 0.693 |
35 | 35 | 0.764 |
36 | 36 | 0.0843 |
37 | 37 | 0.0342 |
38 | 38 | 0.117 |
39 | 39 | 0.549 |
4 | 4 | 0.968 |
40 | 40 | 0.0282 |
41 | 41 | 0.601 |
42 | 42 | 0.181 |
43 | 43 | 0.162 |
44 | 44 | 0.0819 |
45 | 45 | 0.867 |
46 | 46 | 0.102 |
47 | 47 | 0.042 |
48 | 48 | 0.067 |
49 | 49 | 0.122 |
5 | 5 | 0.257 |
50 | 50 | 0.581 |
51 | 51 | 0.497 |
52 | 52 | 0.732 |
53 | 53 | 0.721 |
54 | 54 | 0.379 |
55 | 55 | 0.409 |
56 | 56 | 0.411 |
57 | 57 | 0.289 |
58 | 58 | 0.148 |
59 | 59 | 0.111 |
6 | 6 | 0.558 |
60 | 60 | 0.135 |
61 | 61 | 0.0339 |
62 | 62 | 0.11 |
63 | 63 | 0.166 |
64 | 64 | 0.185 |
65 | 65 | 0.0949 |
66 | 66 | 0.972 |
67 | 67 | 0.561 |
68 | 68 | 0.5 |
69 | 69 | 0.554 |
7 | 7 | 0.27 |
70 | 70 | 0.0204 |
71 | 71 | 0.0358 |
72 | 72 | 0.494 |
73 | 73 | 0.0223 |
74 | 74 | 0.231 |
75 | 75 | 0.0235 |
76 | 76 | 0.236 |
77 | 77 | 0.064 |
78 | 78 | 0.0449 |
79 | 79 | 0.347 |
8 | 8 | 0.102 |
80 | 80 | 0.915 |
81 | 81 | 0.479 |
82 | 82 | 0.263 |
83 | 83 | 0.743 |
84 | 84 | 0.642 |
85 | 85 | 0.0926 |
86 | 86 | 0.402 |
87 | 87 | 0.0644 |
88 | 88 | 0.933 |
89 | 89 | 0.562 |
9 | 9 | 0.568 |
90 | 90 | 0.599 |
91 | 91 | 0.978 |
92 | 92 | 0.139 |
93 | 93 | 0.299 |
94 | 94 | 0.0825 |
95 | 95 | 0.0115 |
96 | 96 | 0.922 |
97 | 97 | 0.801 |
98 | 98 | 0.0948 |
99 | 99 | 0.911 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11063
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000120 human neural stem cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000047 (neuronal stem cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002371 (somatic cell)
0002319 (neural cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0004121 (ectoderm-derived structure)
0011216 (organ system subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000120 (human neural stem cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000221 (ectodermal cell)