FF:12186-129A8: Difference between revisions

Latest revision as of 18:33, 4 June 2020

Name:	CD8+ T Cells (pluriselect), donor090309, donation1
Species:	Human (Homo sapiens)
Library ID:	CNhs12176,RDhi10014
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	NA
age	NA
cell type	T cell, CD8+
cell line	NA
company	NA
collaboration	Matched_genome_OSC(contact:Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
RNA-Seq		SAMD00013687

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12176		CAGE		DRX008064		DRR008936
RDhi10014		RNA-Seq		DRX012347		DRR013795

Accession ID Hg19

Library id		BAM		CTSS
CNhs12176		DRZ000361		DRZ001746
RDhi10014		DRZ002996

Accession ID Hg38

Library id		BAM		CTSS
CNhs12176		DRZ011711		DRZ013096
RDhi10014

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0.12
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.155
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.242
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0106
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.12
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.00153
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.449
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.316
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.868
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.446
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.225
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0.12
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.375
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0.214
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0.464
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.0379
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.502
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.102
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.023
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.375
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.186
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.622
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.149
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.532
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.168
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.12
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.214
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.12
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0.464
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.962
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0.762
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12176

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	3.18073e-9
MA0003.1	MA0003.1	0.757
MA0004.1	MA0004.1	0.763
MA0006.1	MA0006.1	0.401
MA0007.1	MA0007.1	0.935
MA0009.1	MA0009.1	0.388
MA0014.1	MA0014.1	0.803
MA0017.1	MA0017.1	0.0335
MA0018.2	MA0018.2	0.746
MA0019.1	MA0019.1	0.69
MA0024.1	MA0024.1	0.396
MA0025.1	MA0025.1	0.789
MA0027.1	MA0027.1	0.95
MA0028.1	MA0028.1	1.75598e-6
MA0029.1	MA0029.1	0.68
MA0030.1	MA0030.1	0.144
MA0031.1	MA0031.1	0.00266
MA0035.2	MA0035.2	0.143
MA0038.1	MA0038.1	0.11
MA0039.2	MA0039.2	0.946
MA0040.1	MA0040.1	0.937
MA0041.1	MA0041.1	0.661
MA0042.1	MA0042.1	0.868
MA0043.1	MA0043.1	0.282
MA0046.1	MA0046.1	0.985
MA0047.2	MA0047.2	0.1
MA0048.1	MA0048.1	0.424
MA0050.1	MA0050.1	1.04257e-7
MA0051.1	MA0051.1	8.44592e-4
MA0052.1	MA0052.1	0.0093
MA0055.1	MA0055.1	0.763
MA0057.1	MA0057.1	0.581
MA0058.1	MA0058.1	0.587
MA0059.1	MA0059.1	0.378
MA0060.1	MA0060.1	0.124
MA0061.1	MA0061.1	0.0041
MA0062.2	MA0062.2	5.44632e-21
MA0065.2	MA0065.2	0.0416
MA0066.1	MA0066.1	0.281
MA0067.1	MA0067.1	0.803
MA0068.1	MA0068.1	0.523
MA0069.1	MA0069.1	0.861
MA0070.1	MA0070.1	0.615
MA0071.1	MA0071.1	0.61
MA0072.1	MA0072.1	0.278
MA0073.1	MA0073.1	0.825
MA0074.1	MA0074.1	0.588
MA0076.1	MA0076.1	3.49033e-10
MA0077.1	MA0077.1	0.0595
MA0078.1	MA0078.1	0.765
MA0079.2	MA0079.2	0.457
MA0080.2	MA0080.2	1.70467e-13
MA0081.1	MA0081.1	0.00694
MA0083.1	MA0083.1	0.0241
MA0084.1	MA0084.1	0.577
MA0087.1	MA0087.1	0.921
MA0088.1	MA0088.1	0.0444
MA0090.1	MA0090.1	1.34818e-4
MA0091.1	MA0091.1	0.754
MA0092.1	MA0092.1	0.985
MA0093.1	MA0093.1	0.828
MA0099.2	MA0099.2	0.0033
MA0100.1	MA0100.1	0.352
MA0101.1	MA0101.1	0.714
MA0102.2	MA0102.2	0.913
MA0103.1	MA0103.1	0.11
MA0104.2	MA0104.2	0.127
MA0105.1	MA0105.1	1.52569e-5
MA0106.1	MA0106.1	0.193
MA0107.1	MA0107.1	0.948
MA0108.2	MA0108.2	1.01887e-10
MA0111.1	MA0111.1	0.167
MA0112.2	MA0112.2	0.254
MA0113.1	MA0113.1	0.385
MA0114.1	MA0114.1	0.24
MA0115.1	MA0115.1	0.966
MA0116.1	MA0116.1	4.77327e-5
MA0117.1	MA0117.1	0.669
MA0119.1	MA0119.1	0.578
MA0122.1	MA0122.1	0.145
MA0124.1	MA0124.1	0.668
MA0125.1	MA0125.1	0.32
MA0131.1	MA0131.1	0.334
MA0135.1	MA0135.1	0.803
MA0136.1	MA0136.1	1.10153e-26
MA0137.2	MA0137.2	0.0127
MA0138.2	MA0138.2	0.622
MA0139.1	MA0139.1	0.00836
MA0140.1	MA0140.1	0.161
MA0141.1	MA0141.1	0.972
MA0142.1	MA0142.1	0.148
MA0143.1	MA0143.1	0.196
MA0144.1	MA0144.1	0.14
MA0145.1	MA0145.1	0.69
MA0146.1	MA0146.1	0.361
MA0147.1	MA0147.1	0.129
MA0148.1	MA0148.1	0.27
MA0149.1	MA0149.1	0.227
MA0150.1	MA0150.1	0.325
MA0152.1	MA0152.1	0.0208
MA0153.1	MA0153.1	0.432
MA0154.1	MA0154.1	0.0118
MA0155.1	MA0155.1	0.739
MA0156.1	MA0156.1	2.73653e-27
MA0157.1	MA0157.1	0.0019
MA0159.1	MA0159.1	0.15
MA0160.1	MA0160.1	0.46
MA0162.1	MA0162.1	0.821
MA0163.1	MA0163.1	1.35021e-10
MA0164.1	MA0164.1	0.451
MA0258.1	MA0258.1	0.312
MA0259.1	MA0259.1	0.41

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12176

Novel motif	Logo	P-value
1	1	0.234
10	10	0.0201
100	100	0.982
101	101	0.317
102	102	0.71
103	103	0.261
104	104	0.382
105	105	0.0738
106	106	0.902
107	107	0.0976
108	108	0.708
109	109	0.05
11	11	0.0902
110	110	0.383
111	111	0.45
112	112	0.35
113	113	0.213
114	114	0.229
115	115	0.204
116	116	0.757
117	117	0.00487
118	118	0.405
119	119	0.574
12	12	0.587
120	120	0.619
121	121	0.963
122	122	0.258
123	123	0.0498
124	124	0.157
125	125	0.943
126	126	0.267
127	127	0.589
128	128	0.949
129	129	0.534
13	13	0.541
130	130	0.697
131	131	0.648
132	132	0.804
133	133	0.577
134	134	0.952
135	135	0.385
136	136	0.964
137	137	0.137
138	138	0.389
139	139	0.0136
14	14	0.32
140	140	0.0806
141	141	0.732
142	142	0.383
143	143	5.59235e-5
144	144	0.925
145	145	0.306
146	146	0.129
147	147	0.0462
148	148	0.144
149	149	0.767
15	15	0.0768
150	150	0.758
151	151	0.224
152	152	0.384
153	153	0.751
154	154	0.945
155	155	0.029
156	156	0.707
157	157	0.307
158	158	0.228
159	159	0.0802
16	16	0.821
160	160	0.743
161	161	0.346
162	162	0.303
163	163	0.93
164	164	0.249
165	165	0.643
166	166	0.4
167	167	0.291
168	168	0.192
169	169	0.91
17	17	0.914
18	18	0.773
19	19	0.307
2	2	0.767
20	20	0.965
21	21	0.45
22	22	0.974
23	23	0.64
24	24	0.603
25	25	0.0418
26	26	0.349
27	27	0.0407
28	28	0.363
29	29	0.0754
3	3	0.0357
30	30	0.471
31	31	0.91
32	32	0.118
33	33	0.467
34	34	0.947
35	35	0.101
36	36	0.0291
37	37	0.207
38	38	0.594
39	39	0.398
4	4	0.8
40	40	0.57
41	41	0.187
42	42	0.0455
43	43	0.246
44	44	0.575
45	45	0.806
46	46	0.15
47	47	0.066
48	48	0.147
49	49	0.14
5	5	0.171
50	50	0.523
51	51	0.564
52	52	0.252
53	53	0.205
54	54	0.562
55	55	0.22
56	56	0.505
57	57	0.555
58	58	0.0497
59	59	0.479
6	6	0.881
60	60	0.382
61	61	0.0819
62	62	0.023
63	63	0.773
64	64	0.224
65	65	0.767
66	66	0.706
67	67	0.957
68	68	0.656
69	69	0.892
7	7	0.176
70	70	0.0106
71	71	0.13
72	72	0.0652
73	73	0.673
74	74	0.673
75	75	0.0145
76	76	0.185
77	77	0.415
78	78	0.0863
79	79	0.199
8	8	0.982
80	80	9.17574e-4
81	81	0.31
82	82	0.0987
83	83	0.966
84	84	0.345
85	85	0.687
86	86	0.184
87	87	0.671
88	88	0.869
89	89	0.824
9	9	0.489
90	90	0.0165
91	91	0.952
92	92	0.398
93	93	0.279
94	94	0.0938
95	95	0.0105
96	96	0.221
97	97	0.381
98	98	0.135
99	99	0.0876

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12176

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000030 CD8-positive T cell sample
FF:0000210 human sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000791 (mature alpha-beta T cell)
0000084 (T cell)
0000789 (alpha-beta T cell)
0002419 (mature T cell)
0000625 (CD8-positive, alpha-beta T cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000030 (CD8-positive T cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)
CL:0000790 (immature alpha-beta T cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=RNA-Seq@SAMD00013687!CAGE@SAMD00004693
+|DRA_sample_Accession=RNA-Seq@SAMD00013687
-|accession_numbers=CAGE;DRX008064;DRR008936;DRZ000361;DRZ001746!RNA-Seq;DRX012347;DRR013795;DRZ002996;NA
+|accession_numbers=CAGE;DRX008064;DRR008936;DRZ000361;DRZ001746;DRZ011711;DRZ013096!RNA-Seq;DRX012347;DRR013795;DRZ002996;
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000791,CL:0000084,CL:0000789,CL:0002419,CL:0000625
@@ Line 13: / Line 13: @@
 |def=
 |expression_enrichment_score=chr5:133451294..133451310,+!p2@TCF7!2.06!114.68!TCF7;;chr3:27763807..27763822,-!p1@EOMES!1.84!67.85!EOMES;;chr3:63953435..63953499,+!p1@ATXN7!1.81!63.08!ATXN7;;chr2:192015701..192015743,-!p1@STAT4!1.79!81.23!STAT4;;chr7:50343634..50343717,+!p2@IKZF1!1.78!59.57!IKZF1;;chr2:68592406..68592424,+!p1@PLEK!1.77!57.34!PLEK;;chr4:109087445..109087463,-!p1@LEF1!1.70!49.38!LEF1;;chr17:45810594..45810608,+!p1@TBX21!1.69!47.78!TBX21;;chr9:117150254..117150271,-!p1@AKNA!1.66!117.87!AKNA;;chr5:133450365..133450444,+!p1@TCF7!1.65!190.82!TCF7;;chr1:25256756..25256774,-!p1@RUNX3!1.62!74.23!RUNX3;;chr17:37934365..37934387,-!p2@IKZF3!1.59!37.91!IKZF3;;chr2:231090433..231090469,+!p1@SP140!1.59!37.91!SP140;;chr2:192015750..192015793,-!p2@STAT4!1.58!49.06!STAT4;;chr19:16435625..16435682,+!p1@KLF2!1.50!933.72!KLF2;;chr5:133451347..133451358,+!p3@TCF7!1.48!29.31!TCF7;;chr19:19779619..19779670,+!p1@ZNF101!1.47!77.73!ZNF101;;chr14:75988771..75988826,+!p1@BATF!1.45!35.68!BATF;;chr4:109090075..109090095,-!p2@LEF1!1.43!25.80!LEF1;;chr20:50159198..50159299,-!p1@NFATC2!1.42!36.64!NFATC2;;chr2:68592394..68592405,+!p2@PLEK!1.41!24.53!PLEK;;chr7:50344251..50344288,+!p3@IKZF1!1.40!23.89!IKZF1;;chr7:50343895..50343936,+!p5@IKZF1!1.35!21.34!IKZF1;;chr11:128392273..128392308,-!p2@ETS1!1.30!78.05!ETS1;;chr3:71355163..71355209,-!p5@FOXP1!1.30!26.44!FOXP1;;chr3:18486354..18486377,-!p2@SATB1!1.30!23.89!SATB1;;chr20:56195474..56195506,-!p1@ZBP1!1.30!18.80!ZBP1;;chr3:71542615..71542644,-!p12@FOXP1!1.27!17.52!FOXP1;;chr15:60884706..60884743,-!p1@RORA!1.26!87.29!RORA;;chr6:106546808..106546833,+!p3@PRDM1!1.25!21.03!PRDM1;;chr6:391743..391759,+!p1@IRF4!1.24!16.57!IRF4;;chr6:91006518..91006570,-!p1@BACH2!1.21!34.41!BACH2;;chr17:37934204..37934241,-!p3@IKZF3!1.21!15.29!IKZF3;;chr2:97202991..97203043,+!p3@ARID5A!1.21!15.29!ARID5A;;chr13:41593425..41593480,-!p1@ELF1!1.20!94.30!ELF1;;chr11:128392085..128392232,-!p1@ETS1!1.19!474.66!ETS1;;chr17:38020557..38020572,-!p4@IKZF3!1.19!14.65!IKZF3;;chr17:38020392..38020477,-!p1@IKZF3!1.19!14.34!IKZF3;;chr2:231090471..231090504,+!p2@SP140!1.18!14.02!SP140;;chr17:38020516..38020544,-!p5@IKZF3!1.16!13.38!IKZF3;;chr11:128563948..128564003,+!p1@FLI1!1.14!153.87!FLI1;;chr14:64970670..64970712,-!p3@ZBTB25!1.14!27.40!ZBTB25;;chr8:67525443..67525459,-!p2@MYBL1!1.13!18.48!MYBL1;;chr4:109089901..109089930,-!p3@LEF1!1.12!12.11!LEF1;;chr11:47400078..47400106,-!p1@SPI1!1.11!11.79!SPI1;;chr16:88752889..88752921,-!p1@SNAI3!1.10!13.70!SNAI3;;chr14:75988831..75988847,+!p2@BATF!1.08!11.15!BATF;;chr21:36421535..36421610,-!p2@RUNX1!1.07!38.86!RUNX1;;chr10:8096772..8096787,+!p2@GATA3!1.07!12.74!GATA3;;chr13:74707894..74707947,-!p6@KLF12!1.07!12.11!KLF12;;chr14:99738138..99738163,-!p1@BCL11B!1.07!10.83!BCL11B;;chr17:37934280..37934299,-!p6@IKZF3!1.07!10.83!IKZF3;;chr16:3313791..3313834,+!p2@ZNF263!1.06!23.57!ZNF263;;chr20:56195525..56195556,-!p2@ZBP1!1.06!10.51!ZBP1;;chr4:57522166..57522260,-!p2@HOPX!1.05!11.79!HOPX;;chr3:71542684..71542720,-!p18@FOXP1!1.05!10.19!FOXP1;;chr4:109089573..109089585,-!p8@LEF1!1.04!9.88!LEF1;;chr1:92951607..92951661,-!p1@GFI1!1.04!9.88!GFI1;;chr17:38020481..38020506,-!p7@IKZF3!1.01!9.24!IKZF3;;chr7:50344289..50344323,+!p1@IKZF1!1.01!9.24!IKZF1;;chrX:106960285..106960299,-!p1@TSC22D3!1.00!245.30!TSC22D3;;chr4:109088940..109089037,-!p4@LEF1!1.00!8.92!LEF1;;chr4:57522598..57522664,-!p3@HOPX!1.00!8.92!HOPX;;chr7:50348268..50348366,+!p4@IKZF1!1.00!8.92!IKZF1;;chrX:101186981..101187030,-!p1@ZMAT1!0.99!29.31!ZMAT1;;chr2:178128250..178128293,-!p6@NFE2L2!0.97!21.34!NFE2L2;;chr3:18487057..18487105,-!p4@SATB1!0.97!8.28!SATB1;;chr3:71542651..71542683,-!p22@FOXP1!0.97!8.28!FOXP1;;chr8:60031619..60031676,-!p1@TOX!0.96!18.16!TOX;;chr19:38085768..38085821,+!p1@ZNF540!0.96!12.42!ZNF540;;chr3:71179699..71179744,-!p2@FOXP1!0.95!61.16!FOXP1;;chr19:20748574..20748599,-!p1@ZNF737!0.94!47.47!ZNF737;;chr16:89787937..89787971,+!p1@ZNF276!0.93!20.07!ZNF276;;chr4:185395633..185395651,-!p2@IRF2!0.93!12.42!IRF2;;chr4:109088130..109088163,-!p13@LEF1!0.92!7.33!LEF1;;chr10:8096631..8096660,+!p1@GATA3!0.90!8.60!GATA3;;chr4:109089996..109090012,-!p5@LEF1!0.90!7.01!LEF1;;chr4:57522674..57522699,-!p5@HOPX!0.90!7.01!HOPX;;chr9:3525727..3525828,-!p2@RFX3!0.89!18.16!RFX3;;chr19:19729477..19729542,-!p1@PBX4!0.89!14.97!PBX4;;chr14:69262947..69262986,-!p3@ZFP36L1!0.89!8.28!ZFP36L1;;chr3:18480217..18480239,-!p3@SATB1!0.89!6.69!SATB1;;chr9:117150303..117150312,-!p3@AKNA!0.88!8.60!AKNA;;chr6:106546731..106546755,+!p5@PRDM1!0.87!6.37!PRDM1;;chr19:9546177..9546224,-!p1@ZNF266!0.86!47.15!ZNF266;;chr17:36861675..36861697,+!p3@MLLT6!0.85!14.97!MLLT6;;chr14:99737850..99737852,-!p3@BCL11B!0.85!6.05!BCL11B;;chr7:137620650..137620677,-!p3@CREB3L2!0.85!6.05!CREB3L2;;chr16:79634624..79634642,-!p1@MAF!0.84!24.85!MAF;;chr20:44600199..44600219,-!p3@ZNF335!0.84!8.28!ZNF335;;chr19:19779686..19779697,+!p3@ZNF101!0.84!7.01!ZNF101;;chr16:89789248..89789270,+!p8@ZNF276!0.83!5.73!ZNF276;;chr4:109086281..109086319,-!p9@LEF1!0.83!5.73!LEF1;;chr4:109088089..109088101,-!p11@LEF1!0.83!5.73!LEF1;;chr16:68119324..68119364,+!p1@NFATC3!0.82!26.76!NFATC3;;chr19:53289995..53290050,-!p1@ZNF600!0.82!24.85!ZNF600;;chr19:58220517..58220583,-!p1@ZNF154!0.82!18.80!ZNF154;;chr14:65569101..65569119,-!p3@MAX!0.82!18.80!MAX;;chr4:38665769..38665801,+!p2@KLF3!0.81!53.20!KLF3;;chr9:114287433..114287513,+!p1@ZNF483!0.81!14.97!ZNF483;;chr16:79634595..79634620,-!p2@MAF!0.81!10.51!MAF;;chrX:49121165..49121179,-!p1@FOXP3!0.81!5.42!FOXP3;;chr2:148778973..148779035,+!p3@MBD5!0.80!14.65!MBD5;;chr11:128392309..128392350,-!p3@ETS1!0.79!13.06!ETS1;;chr6:45296048..45296082,+!p1@RUNX2!0.79!6.05!RUNX2;;chr6:106546786..106546802,+!p6@PRDM1!0.79!5.10!PRDM1;;chr7:50343864..50343888,+!p7@IKZF1!0.79!5.10!IKZF1;;chr16:89789271..89789291,+!p5@ZNF276!0.79!5.10!ZNF276;;chr2:231090344..231090361,-!p3@SP110!0.79!5.10!SP110;;chr3:71542747..71542766,-!p34@FOXP1!0.79!5.10!FOXP1;;chr4:149365827..149365870,-!p5@NR3C2!0.79!5.10!NR3C2;;chr2:97202480..97202499,+!p1@ARID5A!0.78!55.43!ARID5A;;chr15:60884747..60884774,-!p3@RORA!0.78!13.06!RORA;;chr4:81104895..81104920,+!p2@PRDM8!0.76!7.33!PRDM8;;chr17:46621311..46621332,-!p8@HOXB2!0.76!6.37!HOXB2;;chr1:26697243..26697258,-!p1@ZNF683!0.76!4.78!ZNF683;;chr21:36421347..36421380,-!p8@RUNX1!0.76!4.78!RUNX1;;chr7:21467674..21467727,+!p1@SP4!0.75!20.07!SP4;;chr18:5295679..5295734,-!p2@ZFP161!0.74!10.51!ZFP161;;chr16:89787973..89788001,+!p3@ZNF276!0.74!9.24!ZNF276;;chr19:12444440..12444455,-!p1@ZNF563!0.74!8.28!ZNF563;;chr13:74708246..74708264,-!p8@KLF12!0.74!5.10!KLF12;;chr11:128392258..128392264,-!p7@ETS1!0.74!4.46!ETS1;;chr16:88752861..88752884,-!p2@SNAI3!0.74!4.46!SNAI3;;chr20:52226313..52226350,-!p3@ZNF217!0.74!4.46!ZNF217;;chr6:106546834..106546850,+!p4@PRDM1!0.74!4.46!PRDM1;;chr4:149363494..149363543,-!p1@NR3C2!0.74!4.46!NR3C2;;chr4:57522513..57522548,-!p4@HOPX!0.74!4.46!HOPX;;chr5:131826457..131826514,-!p1@IRF1!0.73!191.46!IRF1;;chr19:49140609..49140643,-!p1@DBP!0.73!27.40!DBP;;chr19:9546227..9546257,-!p2@ZNF266!0.73!24.85!ZNF266;;chr8:123793860..123793921,+!p2@ZHX2!0.73!13.06!ZHX2;;chr17:36861735..36861755,+!p4@MLLT6!0.73!7.96!MLLT6;;chr3:18466787..18466839,-!p1@SATB1!0.72!21.34!SATB1;;chr1:8585945..8586056,-!p3@RERE!0.72!15.61!RERE;;chr16:68119440..68119480,+!p4@NFATC3!0.72!7.33!NFATC3;;chr6:91006575..91006602,-!p2@BACH2!0.72!6.69!BACH2;;chr19:53039233..53039247,+!p2@ZNF808!0.72!6.69!ZNF808;;chr10:8095593..8095625,+!p3@GATA3!0.72!5.10!GATA3;;chr6:143266297..143266356,-!p1@HIVEP2!0.71!22.30!HIVEP2;;chr19:19779589..19779616,+!p2@ZNF101!0.71!8.60!ZNF101;;chr16:85932760..85932775,+!p1@IRF8!0.71!4.14!IRF8;;chr17:38020607..38020621,-!p9@IKZF3!0.71!4.14!IKZF3;;chr7:50344144..50344157,+!p6@IKZF1!0.71!4.14!IKZF1;;chr19:52674696..52674758,-!p1@ZNF836!0.70!13.06!ZNF836;;chr19:35455110..35455149,-!p1@ZNF792!0.70!8.28!ZNF792;;chr3:18466660..18466676,-!p5@SATB1!0.70!4.78!SATB1;;chr13:74708029..74708077,-!p2@KLF12!0.69!12.42!KLF12;;chr16:68118689..68118733,+!p3@NFATC3!0.69!10.83!NFATC3;;chr20:51588873..51588953,+!p1@TSHZ2!0.69!5.42!TSHZ2;;chr19:57183114..57183145,-!p1@ZNF835!0.69!4.46!ZNF835;;chr13:41240737..41240787,-!p1@FOXO1!0.68!51.29!FOXO1;;chr10:3827417..3827428,-!p3@KLF6!0.68!36.95!KLF6;;chr7:77428066..77428132,+!p2@PHTF2!0.68!28.03!PHTF2;;chr11:85375237..85375277,-!p4@CREBZF!0.68!4.46!CREBZF;;chr7:137620684..137620711,-!p4@CREB3L2!0.68!3.82!CREB3L2;;chr1:25291475..25291511,-!p2@RUNX3!0.68!3.82!RUNX3;;chr3:71542827..71542838,-!p53@FOXP1!0.68!3.82!FOXP1;;chr11:13299319..13299424,+!p1@ARNTL!0.67!42.37!ARNTL;;chr6:28092375..28092412,+!p1@ZSCAN16!0.67!17.52!ZSCAN16;;chr6:12008986..12009016,+!p3@HIVEP1!0.67!12.74!HIVEP1;;chr10:35416142..35416169,+!p3@CREM!0.67!10.83!CREM;;chr5:172483347..172483407,+!p1@C5orf41!0.66!31.22!CREBRF;;chr7:64838786..64838809,+!p2@ZNF92!0.66!23.57!ZNF92;;chr2:61108650..61108687,+!p2@REL!0.66!20.07!REL;;chr7:21467642..21467671,+!p2@SP4!0.66!8.92!SP4;;chr19:9879350..9879419,-!p2@ZNF846!0.66!8.28!ZNF846;;chr14:90085458..90085557,-!p1@FOXN3!0.65!42.05!FOXN3;;chr11:67007548..67007610,+!p3@KDM2A!0.65!29.95!KDM2A;;chr19:19843900..19843928,-!p1@ZNF14!0.65!20.07!ZNF14;;chr19:19976634..19976677,+!p2@ZNF253!0.65!14.02!ZNF253;;chr16:79633894..79633954,-!p3@MAF!0.65!7.33!MAF;;chr16:30583169..30583200,-!p2@ZNF688!0.65!5.42!ZNF688;;chr8:72756023..72756055,-!p6@MSC!0.65!4.46!MSC;;chr8:60031563..60031574,-!p7@TOX!0.65!3.50!TOX;;chr21:36421147..36421193,-!p10@RUNX1!0.65!3.50!RUNX1;;chr2:100759037..100759058,-!p2@AFF3!0.65!3.50!AFF3;;chr9:20620829..20620848,-!p7@MLLT3!0.65!3.50!MLLT3;;chr10:8097591..8097627,+!p7@GATA3!0.65!3.50!GATA3;;chr2:231084659..231084721,-!p1@SP110!0.64!93.02!SP110;;chr19:58238958..58239000,-!p1@ZNF671!0.64!15.93!ZNF671;;chr14:64971288..64971316,-!p2@ZBTB25!0.64!11.79!ZBTB25;;chr19:56632858..56632903,-!p2@ZNF787!0.64!9.24!ZNF787;;chr6:135502501..135502546,+!p1@MYB!0.64!4.14!MYB;;chr19:12512062..12512094,-!p1@ZNF799!0.63!7.33!ZNF799;;chr19:19932513..19932569,-!p1@ZNF506!0.62!71.68!ZNF506;;chr4:140005443..140005527,-!p2@ELF2!0.62!22.30!ELF2;;chr19:58144529..58144579,+!p1@ZNF211!0.62!20.07!ZNF211;;chr19:23941680..23941704,-!p1@ZNF681!0.62!10.51!ZNF681;;chr13:74708372..74708409,-!p4@KLF12!0.62!8.28!KLF12;;chr1:44679370..44679422,+!p3@DMAP1!0.62!4.46!DMAP1;;chr1:158978768..158978800,+!p8@IFI16!0.62!3.19!IFI16;;chr1:26697189..26697205,-!p2@ZNF683!0.62!3.19!ZNF683;;chr4:149363475..149363492,-!p2@NR3C2!0.62!3.19!NR3C2;;chrX:134429952..134429971,-!p3@ZNF75D!0.62!3.19!ZNF75D;;chr19:21203451..21203475,+!p1@ZNF430!0.61!37.27!ZNF430;;chr19:22018966..22019001,-!p1@ZNF43!0.61!21.03!ZNF43;;chr19:21512202..21512225,-!p1@ZNF708!0.61!18.80!ZNF708;;chr2:208394817..208394834,+!p3@CREB1!0.61!14.34!CREB1;;chr6:35227282..35227330,+!p2@ZNF76!0.61!13.38!ZNF76;;chr9:3525867..3525902,-!p3@RFX3!0.61!12.42!RFX3;;chr9:20622444..20622468,-!p2@MLLT3!0.61!11.47!MLLT3;;chr8:67525473..67525518,-!p1@MYBL1!0.61!7.96!MYBL1;;chr19:35225078..35225120,+!p2@ZNF181!0.61!7.96!ZNF181;;chrX:131623982..131624011,-!p6@MBNL3!0.61!4.78!MBNL3;;chrX:131624056..131624069,-!p2@MBNL3!0.61!4.46!MBNL3;;chr1:158979686..158979745,+!p1@IFI16!0.60!118.82!IFI16;;chr2:145277640..145277771,-!p1@ZEB2!0.60!48.42!ZEB2;;chr7:99097863..99097936,-!p1@ZNF394!0.60!36.32!ZNF394;;chr17:40440481..40440550,+!p1@STAT5A!0.60!25.49!STAT5A;;chr13:41240717..41240735,-!p2@FOXO1!0.60!24.21!FOXO1;;chr10:104154246..104154347,+!p3@NFKB2!0.60!21.66!NFKB2;;chr3:114819124..114819200,-!p3@ZBTB20!0.60!7.96!ZBTB20;;chr6:157098579..157098634,+!p4@ARID1B!0.60!7.65!ARID1B;;chr19:37064145..37064216,-!p1@ZNF529!0.59!29.63!ZNF529;;chr9:88969339..88969422,-!p2@ZCCHC6!0.59!27.40!ZCCHC6;;chr8:42698194..42698239,-!p2@THAP1!0.59!15.29!THAP1;;chr6:126102292..126102329,+!p3@NCOA7!0.59!11.15!NCOA7;;chr14:69262789..69262822,-!p2@ZFP36L1!0.59!8.60!ZFP36L1;;chr6:15249128..15249177,+!p4@JARID2!0.59!5.73!JARID2;;chr8:71316428..71316459,-!p2@NCOA2!0.59!5.42!NCOA2;;chrX:131623932..131623964,-!p7@MBNL3!0.59!4.46!MBNL3;;chr7:150102756..150102772,+!p5@ZNF775!0.59!2.87!ZNF775;;chr7:63505799..63505904,+!p1@ZNF727!0.59!2.87!ZNF727;;chr17:45810816..45810838,+!p2@TBX21!0.59!2.87!TBX21;;chr17:46621146..46621180,-!p10@HOXB2!0.59!2.87!HOXB2;;chr2:100759010..100759035,-!p1@AFF3!0.59!2.87!AFF3;;chr3:71353892..71353928,-!p31@FOXP1!0.59!2.87!FOXP1;;chr4:109087906..109087928,-!p12@LEF1!0.59!2.87!LEF1;;chr12:54778471..54778528,-!p1@ZNF385A!0.59!2.87!ZNF385A;;chr19:38183138..38183157,-!p2@ZNF781!0.59!2.87!ZNF781;;chr14:64970494..64970578,-!p1@ZBTB25!0.58!34.72!ZBTB25;;chr7:64838754..64838778,+!p1@ZNF92!0.58!33.13!ZNF92;;chr6:109804412..109804458,-!p1@ZBTB24!0.58!29.95!ZBTB24;;chr1:249132410..249132456,+!p1@ZNF672!0.58!25.80!ZNF672;;chr19:21579908..21579949,+!p1@ZNF493!0.58!20.39!ZNF493;;chr8:67525524..67525543,-!p3@MYBL1!0.58!5.10!MYBL1;;chr19:49139477..49139552,-!p4@DBP!0.58!3.82!DBP;;chr17:42295777..42295816,-!p7@UBTF!0.58!3.50!UBTF;;chr7:86781734..86781777,+!p1@DMTF1!0.57!61.80!DMTF1;;chr19:56146352..56146420,+!p2@ZNF580,p2@ZNF581!0.57!21.98!ZNF580;;chr19:38270215..38270251,-!p1@ZNF573!0.57!13.38!ZNF573;;chr19:58694742..58694800,+!p2@ZNF274!0.57!13.38!ZNF274;;chr19:12405645..12405685,-!p1@ZNF44!0.57!11.47!ZNF44;;chr12:133707021..133707071,-!p2@ZNF891!0.57!5.10!ZNF891;;chr1:67395855..67395872,+!p5@MIER1!0.57!4.46!MIER1;;chr19:37464063..37464127,+!p2@ZNF568!0.57!3.82!ZNF568;;chr2:231191875..231191918,+!p1@SP140L!0.56!31.54!SP140L;;chr9:73028332..73028385,-!p3@KLF9!0.56!10.83!KLF9;;chr17:38256973..38256990,-!p5@NR1D1!0.56!7.01!NR1D1;;chr3:33482052..33482116,-!p2@UBP1!0.56!4.46!UBP1;;chr19:58239007..58239016,-!p2@ZNF671!0.56!3.50!ZNF671;;chr10:44144292..44144338,-!p1@ZNF32!0.55!20.39!ZNF32;;chr3:23986824..23986848,+!p2@NR1D2!0.55!17.52!NR1D2;;chr4:87928142..87928165,+!p5@AFF1!0.55!10.51!AFF1;;chr16:29817433..29817468,+!p8@MAZ!0.55!9.56!MAZ;;chr9:97021572..97021615,+!p1@ZNF169!0.55!7.65!ZNF169;;chr9:20621927..20621996,-!p3@MLLT3!0.55!4.78!MLLT3;;chr6:45390269..45390298,+!p5@RUNX2!0.55!4.78!RUNX2;;chr5:142814241..142814278,-!p12@NR3C1!0.55!2.55!NR3C1;;chr7:50343800..50343811,+!p8@IKZF1!0.55!2.55!IKZF1;;chr7:92076686..92076700,+!p3@GATAD1!0.55!2.55!GATAD1;;chr3:27764190..27764208,-!p2@EOMES!0.55!2.55!EOMES;;chr4:109089290..109089320,-!p14@LEF1!0.55!2.55!LEF1;;chr10:35416223..35416234,+!p12@CREM!0.55!2.55!CREM;;chr13:41593493..41593506,-!p8@ELF1!0.55!2.55!ELF1;;chr9:32551047..32551066,-!p5@TOPORS!0.55!2.55!TOPORS;;chr19:22193731..22193751,-!p1@ZNF208!0.55!2.55!ZNF208;;chr15:31619326..31619390,+!p2@KLF13!0.54!35.68!KLF13;;chr7:64126503..64126528,+!p1@ZNF107!0.54!21.66!ZNF107;;chr20:25677465..25677497,-!p1@ZNF337!0.54!19.11!ZNF337;;chr2:95831389..95831432,-!p1@ZNF514!0.54!13.06!ZNF514;;chr19:37709076..37709154,+!p1@ZNF383!0.54!9.88!ZNF383;;chr2:97202451..97202462,+!p2@ARID5A!0.54!6.37!ARID5A;;chr8:125985531..125985571,+!p1@ZNF572!0.54!5.73!ZNF572;;chr6:42419649..42419673,-!p3@TRERF1!0.54!4.78!TRERF1;;chr19:49140595..49140607,-!p3@DBP!0.54!3.82!DBP;;chr2:174828545..174828644,-!p1@SP3!0.53!47.15!SP3;;chr4:331578..331615,+!p1@ZNF141!0.53!32.81!ZNF141;;chr2:208031542..208031595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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000084;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000625;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000789;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
 |ffid_belonging_in_development=CL:0000134,CL:0000051,CL:0000790
 |fonse_cell_line=
@@ Line 41: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090309%252c%2520donation1.CNhs12176.12186-129A8.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090309%252c%2520donation1.CNhs12176.12186-129A8.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090309%252c%2520donation1.CNhs12176.12186-129A8.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090309%252c%2520donation1.CNhs12176.12186-129A8.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090309%252c%2520donation1.CNhs12176.12186-129A8.hg38.nobarcode.ctss.bed.gz
 |id=FF:12186-129A8
 |is_a=EFO:0002091;;FF:0000030;;FF:0000210
 |is_obsolete=
-|library_id=CNhs12176
+|library_id=CNhs12176!RDhi10014
 |library_id_phase_based=2:CNhs12176
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12186
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12186
 |name=CD8+ T Cells (pluriselect), donor090309, donation1
 |namespace=FANTOM5
@@ Line 53: / Line 63: @@
 |profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12186-129A8;search_select_hide=table117:FF:12186-129A8
 }}

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FF:12186-129A8: Difference between revisions

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Latest revision as of 18:33, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0