FF:10637-108I7: Difference between revisions
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00005971 | ||
| | |accession_numbers=CAGE;DRX007964;DRR008836;DRZ000261;DRZ001646;DRZ011611;DRZ012996 | ||
| | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000479,UBERON:0002346,UBERON:0004121,UBERON:0000061,UBERON:0000465,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0001062,UBERON:0010316,UBERON:0005291,UBERON:0010317 | ||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
| | |ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:171,DOID:3095,DOID:2994 | ||
| | |ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001 | ||
| | |comment= | ||
|created_by= | |||
|creation_date= | |||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |||
|expression_enrichment_score=chr1:214161272..214161322,+!p1@PROX1!2.69!671.31!PROX1;;chrX:25034067..25034088,-!p1@ARX!2.63!424.72!ARX;;chr7:31380292..31380351,-!p1@NEUROD6!2.51!319.07!NEUROD6;;chr7:19157248..19157268,-!p1@TWIST1!2.42!688.96!TWIST1;;chrX:30327504..30327509,-!p1@NR0B1!2.34!217.46!NR0B1;;chr4:174451370..174451387,-!p1@HAND2!2.30!196.42!HAND2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.21!160.92!PEG3;;chr1:38512457..38512474,-!p1@POU3F1!2.14!150.72!POU3F1;;chr12:114845810..114845824,-!p1@TBX5!2.06!114.37!TBX5;;chr15:57511609..57511651,+!p2@TCF12!1.89!125.63!TCF12;;chr2:5832508..5832524,+!p1@SOX11!1.89!75.89!SOX11;;chr2:223163706..223163730,-!p1@PAX3!1.87!72.70!PAX3;;chr2:176972000..176972025,+!p4@HOXD11!1.78!59.73!HOXD11;;chr17:37764128..37764258,-!p1@NEUROD2!1.70!49.32!NEUROD2;;chr8:25902876..25902936,-!p1@EBF2!1.69!47.83!EBF2;;chr1:18957333..18957375,+!p1@PAX7!1.66!44.64!PAX7;;chr1:214161358..214161377,+!p3@PROX1!1.64!42.73!PROX1;;chr1:214161328..214161348,+!p2@PROX1!1.63!41.88!PROX1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.63!41.66!HOXC5;;chr2:73520667..73520683,-!p1@EGR4!1.62!40.60!EGR4;;chr10:118897911..118897974,-!p1@VAX1!1.62!40.39!VAX1;;chr12:114843940..114843955,-!p2@TBX5!1.61!39.96!TBX5;;chr3:189349162..189349207,+!p2@TP63!1.61!39.75!TP63;;chr1:164528616..164528660,+!p5@PBX1!1.57!71.64!PBX1;;chr1:170632285..170632309,+!p1@PRRX1!1.57!41.03!PRRX1;;chr16:67197654..67197716,+!p3@HSF4!1.57!35.93!HSF4;;chr1:170632477..170632506,+!p6@PRRX1!1.55!34.65!PRRX1;;chr12:114845834..114845848,-!p5@TBX5!1.55!34.44!TBX5;;chr4:174451350..174451363,-!p3@HAND2!1.54!33.59!HAND2;;chr1:25256756..25256774,-!p1@RUNX3!1.49!54.63!RUNX3;;chr22:19748231..19748317,+!p1@TBX1!1.48!29.55!TBX1;;chr1:170632439..170632465,+!p11@PRRX1!1.48!29.34!PRRX1;;chr10:118898078..118898093,-!p3@VAX1!1.47!28.49!VAX1;;chr13:100634031..100634045,+!p1@ZIC2!1.46!28.06!ZIC2;;chr17:46682321..46682362,-!p1@HOXB6!1.46!28.06!HOXB6;;chr1:170632137..170632172,+!p10@PRRX1!1.46!27.63!PRRX1;;chr6:10415484..10415508,-!p3@TFAP2A!1.45!27.42!TFAP2A;;chr7:121944689..121944705,-!p2@FEZF1!1.45!27.42!FEZF1;;chr17:46806035..46806059,-!p2@HOXB13!1.44!26.78!HOXB13;;chr7:121944796..121944814,-!p1@FEZF1!1.43!25.93!FEZF1;;chr6:10412600..10412637,-!p1@TFAP2A!1.42!41.88!TFAP2A;;chr12:54393880..54393962,+!p1@HOXC9!1.42!25.08!HOXC9;;chr2:166326200..166326216,+!p1@CSRNP3!1.40!34.65!CSRNP3;;chr2:176969097..176969109,+!p3@HOXD11!1.40!24.02!HOXD11;;chr10:131762504..131762555,-!p1@EBF3!1.39!23.38!EBF3;;chr13:100634004..100634025,+!p2@ZIC2!1.36!22.11!ZIC2;;chr3:181429704..181429722,+!p1@SOX2!1.35!21.47!SOX2;;chr19:46800289..46800327,+!p2@HIF3A!1.35!21.47!HIF3A;;chr4:111558135..111558198,-!p2@PITX2!1.32!19.77!PITX2;;chr20:42543441..42543497,+!p1@TOX2!1.31!84.60!TOX2;;chr14:99738138..99738163,-!p1@BCL11B!1.31!19.34!BCL11B;;chr13:100623375..100623425,-!p1@ZIC5!1.31!19.34!ZIC5;;chrY:21906594..21906622,-!p1@KDM5D!1.30!18.92!KDM5D;;chr2:176971980..176971995,+!p9@HOXD11!1.30!18.92!HOXD11;;chr2:177001290..177001315,+!p1@HOXD3!1.30!18.92!HOXD3;;chr8:40755333..40755352,-!p1@ZMAT4!1.29!18.71!ZMAT4;;chr11:129245736..129245758,+!p2@BARX2!1.29!18.49!BARX2;;chr1:170632115..170632136,+!p9@PRRX1!1.29!18.28!PRRX1;;chr2:145277640..145277771,-!p1@ZEB2!1.28!236.38!ZEB2;;chr8:106330656..106330684,+!p1@ZFPM2!1.28!46.55!ZFPM2;;chr19:49864746..49864780,-!p2@TEAD2!1.28!24.66!TEAD2;;chr2:176971685..176971700,+!p6@HOXD11!1.28!18.07!HOXD11;;chr12:54366894..54366922,+!p2@HOXC11!1.28!18.07!HOXC11;;chr13:79177703..79177729,-!p2@POU4F1!1.28!17.86!POU4F1;;chr8:93074803..93074845,-!p1@RUNX1T1!1.28!17.86!RUNX1T1;;chr1:18958008..18958023,+!p2@PAX7!1.27!17.43!PAX7;;chr3:193853927..193853944,+!p1@HES1!1.26!539.73!HES1;;chr14:37131058..37131139,+!p1@PAX9!1.26!17.22!PAX9;;chr13:79177674..79177701,-!p1@POU4F1!1.26!17.01!POU4F1;;chr14:73360799..73360817,-!p1@DPF3!1.25!56.76!DPF3;;chr12:54366949..54366973,+!p3@HOXC11!1.25!16.58!HOXC11;;chr8:37553261..37553282,+!p2@ZNF703!1.24!121.59!ZNF703;;chr1:164528687..164528711,+!p6@PBX1!1.24!19.13!PBX1;;chr8:77593474..77593612,+!p1@ZFHX4!1.23!67.17!ZFHX4;;chr12:96588368..96588394,+!p3@ELK3!1.23!42.30!ELK3;;chr5:158526917..158526932,-!p1@EBF1!1.23!39.33!EBF1;;chr20:42543506..42543549,+!p2@TOX2!1.21!36.14!TOX2;;chr2:177001336..177001357,+!p2@HOXD3!1.21!15.31!HOXD3;;chr11:16629630..16629643,-!p20@SOX6!1.21!15.09!SOX6;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.20!14.88!HOXC5;;chr11:16629369..16629392,-!p5@SOX6!1.20!14.67!SOX6;;chr2:25475120..25475176,-!p2@DNMT3A!1.19!19.56!DNMT3A;;chr12:54378923..54378966,+!p1@HOXC10!1.19!14.46!HOXC10;;chr14:21994337..21994442,-!p1@SALL2!1.18!38.90!SALL2;;chr1:197886461..197886558,+!p1@LHX9!1.18!14.24!LHX9;;chr2:66662281..66662308,+!p1@MEIS1!1.17!46.98!MEIS1;;chr9:20621927..20621996,-!p3@MLLT3!1.17!23.17!MLLT3;;chr14:95236551..95236576,-!p2@GSC!1.17!13.82!GSC;;chr11:15989432..15989436,-!p17@SOX6!1.16!13.60!SOX6;;chr12:54366975..54367001,+!p1@HOXC11!1.16!13.60!HOXC11;;chr2:63277948..63277974,+!p1@OTX1!1.15!12.97!OTX1;;chr2:88752207..88752218,-!p1@FOXI3!1.15!12.97!FOXI3;;chr6:10415276..10415341,-!p2@TFAP2A!1.14!15.52!TFAP2A;;chr2:176994408..176994492,+!p1@HOXD8!1.14!12.75!HOXD8;;chr3:181429741..181429767,+!p2@SOX2!1.14!12.75!SOX2;;chr11:16629650..16629667,-!p22@SOX6!1.13!12.54!SOX6;;chr9:132427883..132427951,+!p2@PRRX2!1.13!12.54!PRRX2;;chr2:66662249..66662267,+!p2@MEIS1!1.12!46.55!MEIS1;;chr16:86600426..86600441,+!p1@FOXC2!1.12!29.97!FOXC2;;chr6:10412392..10412409,-!p4@TFAP2A!1.12!13.82!TFAP2A;;chr8:65492915..65492932,+!p1@BHLHE22!1.12!12.33!BHLHE22;;chr2:176969228..176969260,+!p1@HOXD11!1.12!12.33!HOXD11;;chr12:54348655..54348693,+!p1@HOXC12!1.12!12.33!HOXC12;;chr5:92918768..92918783,+!p8@NR2F1!1.12!12.12!NR2F1;;chr19:58545454..58545498,+!p1@ZSCAN1!1.12!12.12!ZSCAN1;;chr2:176969179..176969226,+!p2@HOXD11!1.11!11.90!HOXD11;;chr2:176957443..176957457,+!p1@HOXD13!1.10!11.48!HOXD13;;chr2:25475094..25475112,-!p3@DNMT3A!1.10!11.48!DNMT3A;;chr11:16629597..16629610,-!p25@SOX6!1.10!11.48!SOX6;;chr1:151032142..151032195,+!p5@MLLT11!1.09!21.90!MLLT11;;chr11:44331576..44331650,-!p1@ALX4!1.08!11.05!ALX4;;chr1:170632250..170632277,+!p7@PRRX1!1.07!10.84!PRRX1;;chr2:177001366..177001379,+!p4@HOXD3!1.07!10.63!HOXD3;;chr8:81787006..81787031,-!p2@ZNF704!1.07!10.63!ZNF704;;chr9:86594530..86594564,-!p@chr9:86594530..86594564,-!1.06!40.60!HNRPK;;chr9:20622444..20622468,-!p2@MLLT3!1.06!34.65!MLLT3;;chr14:24837368..24837401,+!p1@NFATC4!1.06!24.66!NFATC4;;chr3:33482052..33482116,-!p2@UBP1!1.06!16.37!UBP1;;chr1:164528588..164528610,+!p8@PBX1!1.06!16.37!PBX1;;chr1:8763440..8763460,-!p2@RERE!1.05!51.87!RERE;;chr1:153940354..153940395,+!p1@CREB3L4!1.05!41.45!CREB3L4;;chr8:106330696..106330719,+!p2@ZFPM2!1.05!13.18!ZFPM2;;chr2:5832493..5832507,+!p2@SOX11!1.05!10.20!SOX11;;chr17:46688334..46688385,-!p1@HOXB7!1.04!14.46!HOXB7;;chr6:135502408..135502459,+!p2@MYB!1.04!11.48!MYB;;chr2:95963052..95963106,+!p1@KCNIP3!1.04!9.99!KCNIP3;;chr10:101292684..101292706,+!p1@NKX2-3!1.04!9.99!NKX2-3;;chr1:214161428..214161437,+!p6@PROX1!1.03!9.78!PROX1;;chr6:130339710..130339745,+!p1@L3MBTL3!1.02!76.10!L3MBTL3;;chr8:81398682..81398697,+!p6@ZBTB10!1.02!12.54!ZBTB10;;chr1:164528297..164528309,+!p9@PBX1!1.02!12.54!PBX1;;chr8:30890810..30890880,-!p1@PURG!1.02!9.57!PURG;;chr17:46806016..46806029,-!p5@HOXB13!1.02!9.57!HOXB13;;chr17:46806067..46806097,-!p1@HOXB13!1.02!9.57!HOXB13;;chr9:14314131..14314147,-!p2@NFIB!1.01!52.51!NFIB;;chr9:102584262..102584276,+!p1@NR4A3!1.01!21.04!NR4A3;;chr1:247171347..247171366,-!p2@ZNF695!1.01!17.22!ZNF695;;chr6:391743..391759,+!p1@IRF4!1.01!9.14!IRF4;;chr14:95236440..95236465,-!p1@GSC!1.01!9.14!GSC;;chr2:145277882..145277967,-!p3@ZEB2!1.00!15.73!ZEB2;;chr1:170632028..170632043,+!p20@PRRX1!1.00!8.93!PRRX1;;chr10:70320041..70320065,+!p2@TET1!1.00!8.93!TET1;;chr1:170633262..170633285,+!p3@PRRX1!0.99!10.20!PRRX1;;chr11:129245526..129245553,+!p1@BARX2!0.99!8.72!BARX2;;chr15:76629123..76629151,+!p1@ISL2!0.98!9.57!ISL2;;chr17:46806419..46806438,-!p4@HOXB13!0.98!8.50!HOXB13;;chr12:114843910..114843921,-!p6@TBX5!0.98!8.50!TBX5;;chr12:52445218..52445237,+!p1@NR4A1!0.97!108.84!NR4A1;;chr1:8763463..8763499,-!p6@RERE!0.97!23.38!RERE;;chr14:103059006..103059017,+!p2@RCOR1!0.97!13.18!RCOR1;;chr14:21994449..21994524,-!p2@SALL2!0.96!24.87!SALL2;;chr10:70320074..70320106,+!p1@TET1!0.96!16.58!TET1;;chr9:102584128..102584144,+!p3@NR4A3!0.96!15.94!NR4A3;;chr18:56532100..56532130,+!p1@ZNF532!0.96!15.31!ZNF532;;chr13:37494365..37494381,-!p1@SMAD9!0.96!14.24!SMAD9;;chr13:112721457..112721482,+!p1@SOX1!0.96!8.08!SOX1;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!0.96!8.08!POU3F3;;chr1:170632051..170632081,+!p16@PRRX1!0.96!8.08!PRRX1;;chr1:18957605..18957623,+!p3@PAX7!0.96!8.08!PAX7;;chr1:18957627..18957640,+!p4@PAX7!0.96!8.08!PAX7;;chr8:37553292..37553317,+!p1@ZNF703!0.95!191.10!ZNF703;;chr1:249153114..249153175,-!p3@ZNF692!0.95!15.73!ZNF692;;chrX:84499081..84499115,+!p2@ZNF711!0.95!11.69!ZNF711;;chr1:170633348..170633399,+!p2@PRRX1!0.95!10.84!PRRX1;;chr1:214161619..214161629,+!p5@PROX1!0.95!7.87!PROX1;;chr19:31840130..31840160,-!p2@TSHZ3!0.94!12.12!TSHZ3;;chr15:57511589..57511608,+!p4@TCF12!0.94!7.65!TCF12;;chr1:227751231..227751273,+!p1@ZNF678!0.93!49.10!ZNF678;;chr19:31840438..31840470,-!p3@TSHZ3!0.93!9.57!TSHZ3;;chr1:8877692..8877732,-!p1@RERE!0.92!62.07!RERE;;chr7:150945754..150945789,-!p2@SMARCD3!0.92!23.60!SMARCD3;;chr17:7492684..7492778,-!p2@SOX15!0.92!15.94!SOX15;;chr5:92920456..92920488,+!p9@NR2F1!0.92!8.50!NR2F1;;chr1:40915725..40915808,+!p1@ZNF643!0.91!21.90!ZNF643;;chr7:19157043..19157088,-!p2@TWIST1!0.91!18.49!TWIST1;;chr6:1312325..1312340,+!p1@FOXQ1!0.91!11.90!FOXQ1;;chr11:128563948..128564003,+!p1@FLI1!0.90!86.94!FLI1;;chr5:158527104..158527135,-!p4@EBF1!0.90!7.01!EBF1;;chr13:100638100..100638115,+!p4@ZIC2!0.89!6.80!ZIC2;;chrY:21906761..21906810,-!p2@KDM5D!0.89!6.80!KDM5D;;chr2:176972047..176972063,+!p7@HOXD11!0.89!6.80!HOXD11;;chr2:85981107..85981120,+!p3@ATOH8!0.89!6.80!ATOH8;;chr8:86089417..86089440,+!p2@E2F5!0.88!13.60!E2F5;;c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| |||
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316 | |||
|fonse_cell_line=FF:10637-108I7 | |fonse_cell_line=FF:10637-108I7 | ||
|fonse_cell_line_closure=FF:10637-108I7 | |fonse_cell_line_closure=FF:10637-108I7 | ||
| Line 66: | Line 40: | ||
|fonse_treatment= | |fonse_treatment= | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|top_motifs= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/neuroectodermal%2520tumor%2520cell%2520line%253aFU-RPNT-1.CNhs11744.10637-108I7.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/neuroectodermal%2520tumor%2520cell%2520line%253aFU-RPNT-1.CNhs11744.10637-108I7.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/neuroectodermal%2520tumor%2520cell%2520line%253aFU-RPNT-1.CNhs11744.10637-108I7.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/neuroectodermal%2520tumor%2520cell%2520line%253aFU-RPNT-1.CNhs11744.10637-108I7.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/neuroectodermal%2520tumor%2520cell%2520line%253aFU-RPNT-1.CNhs11744.10637-108I7.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10637-108I7 | |||
|is_a=DOID:171;;EFO:0002091;;FF:0000003;;FF:0000210;;UBERON:0002346 | |||
|is_obsolete= | |||
|library_id=CNhs11744 | |||
|library_id_phase_based=2:CNhs11744 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10637 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10637 | |||
|name=neuroectodermal tumor cell line:FU-RPNT-1 | |||
|namespace=FANTOM5 | |||
|part_of= | |||
|profile_cagescan=,,, | |||
|profile_hcage=CNhs11744,LSID819,release009,COMPLETED | |||
|profile_rnaseq= | |||
|profile_srnaseq=,,, | |||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.00645750163491707,0,0.0396395303669237,0.796002660611057,0,0,0,0.0617058589502551,0,0,0,0,0,0,0,0.0837085814034122,0,0.000537518103041396,0,0.52467872311554,0,0,0,0.934598267064244,0,0,0.587326647891405,0,0,0,0,0,0,0,0,0,0,0,0,0.0520276041651873,0.551229639722143,0,0,0,0,0,0,0,0.0176392695888717,0,0,0,0.0837085814034122,1.22351006471418,0.00154291185622024,0.267242073812037,0.731636788393858,0,0,0.426184873248633,0.0837085814034122,0,0,0,0,0,0,0,0.153860528451469,0,0,0,0,0.0837085814034122,0,0,0,0.223349727984157,0.118784554927441,0,0,0,0,0,0,0,0,0.0268510715863308,0.0955336647607512,0.081462941795826,0.0418542907017061,0.702337763470469,0.0418542907017061,0,0.0558251772137626,0.846524757269666,0,0,0,0,0,0,0.214240915052713,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0.314472828573014,0,0,0.106760552989615,0.218799437599542,0,0,0.436751629105287,0,0,0 | |||
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| |||
|rna_box=108 | |||
|rna_catalog_number= | |||
|rna_concentration=1.40737 | |||
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0 | |||
|rna_lot_number= | |||
|rna_od260/230=2.1 | |||
|rna_od260/280=2.1 | |||
|rna_position=I7 | |||
|rna_rin= | |||
|rna_sample_type=total RNA | |||
|rna_tube_id=108I7 | |||
|rna_weight_ug=105.55275 | |||
|sample_age=22 | |||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB1495 | |||
|sample_cell_line=FU-RPNT-1 | |||
|sample_cell_lot= | |||
|sample_cell_type=unclassifiable | |||
|sample_collaboration=Yukio Nakamura (RIKEN BRC) | |||
|sample_company=RIKEN Bioresource centre | |||
|sample_description= | |||
|sample_dev_stage= | |||
|sample_disease=neuroectodermal tumor | |||
|sample_donor(cell lot)= | |||
|sample_ethnicity=J | |||
|sample_experimental_condition= | |||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.7928579335699e-271!GO:0043231;intracellular membrane-bound organelle;4.08753808362083e-256!GO:0043227;membrane-bound organelle;5.82255916686433e-256!GO:0043226;organelle;1.67281230849325e-250!GO:0043229;intracellular organelle;6.59380226049642e-250!GO:0005634;nucleus;1.60030065885542e-148!GO:0044422;organelle part;4.96713514900997e-138!GO:0044446;intracellular organelle part;1.35854172453627e-136!GO:0005737;cytoplasm;1.73170110872941e-128!GO:0044237;cellular metabolic process;3.3704318101749e-116!GO:0044238;primary metabolic process;3.49380226163933e-116!GO:0043170;macromolecule metabolic process;8.77307049407152e-115!GO:0032991;macromolecular complex;1.35801280580097e-97!GO:0044444;cytoplasmic part;5.41662152267542e-96!GO:0010467;gene expression;6.20634656570297e-96!GO:0030529;ribonucleoprotein complex;2.28851964180862e-95!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.77712876330004e-94!GO:0044428;nuclear part;3.46225498088566e-89!GO:0003723;RNA binding;3.88716475774761e-88!GO:0043283;biopolymer metabolic process;2.29119038218454e-86!GO:0043233;organelle lumen;1.47807538334628e-79!GO:0031974;membrane-enclosed lumen;1.47807538334628e-79!GO:0003676;nucleic acid binding;6.5646906570815e-77!GO:0005515;protein binding;1.23444964031479e-63!GO:0016070;RNA metabolic process;4.46674345413673e-61!GO:0006396;RNA processing;1.75004222038912e-59!GO:0005840;ribosome;2.10150021212944e-56!GO:0005739;mitochondrion;4.12081976699292e-55!GO:0031981;nuclear lumen;8.96849995746748e-55!GO:0006412;translation;9.52341856899395e-50!GO:0003735;structural constituent of ribosome;5.57139993118713e-48!GO:0016071;mRNA metabolic process;7.50190729300365e-48!GO:0016043;cellular component organization and biogenesis;4.06001738514524e-46!GO:0006259;DNA metabolic process;7.29594438908549e-46!GO:0043234;protein complex;1.47500474349218e-45!GO:0008380;RNA splicing;4.25104135199528e-44!GO:0006397;mRNA processing;3.21275830312177e-41!GO:0033279;ribosomal subunit;5.9733734314056e-41!GO:0033036;macromolecule localization;3.70846705897415e-40!GO:0006996;organelle organization and biogenesis;1.08006264846576e-38!GO:0015031;protein transport;5.74649004404891e-38!GO:0031090;organelle membrane;1.32395514170127e-37!GO:0044429;mitochondrial part;6.10799298210598e-36!GO:0008104;protein localization;1.60025638424557e-35!GO:0005654;nucleoplasm;1.72710501210373e-35!GO:0044249;cellular biosynthetic process;1.67321943410696e-34!GO:0019538;protein metabolic process;2.16556517830871e-34!GO:0045184;establishment of protein localization;3.39881866983326e-34!GO:0031967;organelle envelope;8.69131594492476e-34!GO:0043228;non-membrane-bound organelle;8.88469738506626e-34!GO:0043232;intracellular non-membrane-bound organelle;8.88469738506626e-34!GO:0031975;envelope;1.30379697612466e-33!GO:0009059;macromolecule biosynthetic process;2.94048944892532e-33!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.97879089040118e-32!GO:0065003;macromolecular complex assembly;4.33189218209893e-32!GO:0005681;spliceosome;1.04400506239084e-31!GO:0009058;biosynthetic process;1.24468605642848e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.1331892875511e-30!GO:0044267;cellular protein metabolic process;2.71227758557126e-30!GO:0044260;cellular macromolecule metabolic process;4.30237862426658e-30!GO:0046907;intracellular transport;4.65716836583863e-30!GO:0044451;nucleoplasm part;4.03019140372917e-28!GO:0022607;cellular component assembly;6.62398795849914e-27!GO:0007049;cell cycle;1.07672268151648e-26!GO:0006886;intracellular protein transport;3.90542183882178e-26!GO:0019222;regulation of metabolic process;4.77426367616334e-25!GO:0005829;cytosol;5.25758208413078e-25!GO:0051276;chromosome organization and biogenesis;2.54090505071485e-24!GO:0006350;transcription;5.60924415572829e-24!GO:0006974;response to DNA damage stimulus;1.48448842599463e-23!GO:0019866;organelle inner membrane;2.1752874278277e-23!GO:0044445;cytosolic part;1.09598600823105e-22!GO:0005694;chromosome;4.78994946620068e-22!GO:0031323;regulation of cellular metabolic process;6.29003592782915e-22!GO:0000166;nucleotide binding;6.34716875431142e-22!GO:0015935;small ribosomal subunit;1.29867938637618e-21!GO:0006281;DNA repair;2.00007167313995e-21!GO:0005740;mitochondrial envelope;2.81521268691312e-21!GO:0031966;mitochondrial membrane;3.34715475030169e-21!GO:0006325;establishment and/or maintenance of chromatin architecture;3.42850681280496e-21!GO:0005743;mitochondrial inner membrane;8.75650454692565e-21!GO:0022402;cell cycle process;1.51992682350455e-20!GO:0032774;RNA biosynthetic process;1.54836655839515e-20!GO:0051649;establishment of cellular localization;1.65987667813069e-20!GO:0015934;large ribosomal subunit;1.6947689158766e-20!GO:0010468;regulation of gene expression;2.71034557155727e-20!GO:0006323;DNA packaging;2.74594069266128e-20!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.74594069266128e-20!GO:0006351;transcription, DNA-dependent;2.77363199247094e-20!GO:0006119;oxidative phosphorylation;2.87281813672737e-20!GO:0003677;DNA binding;3.19935175280637e-20!GO:0008134;transcription factor binding;7.28151443066793e-20!GO:0051641;cellular localization;7.28151443066793e-20!GO:0005730;nucleolus;7.28151443066793e-20!GO:0016462;pyrophosphatase activity;7.30294822349031e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;9.93452314489796e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;1.38652742554341e-19!GO:0022618;protein-RNA complex assembly;1.89934375438497e-19!GO:0044455;mitochondrial membrane part;4.85301248973977e-19!GO:0017111;nucleoside-triphosphatase activity;5.05406002338669e-19!GO:0044427;chromosomal part;8.1472536093473e-19!GO:0016874;ligase activity;1.20853137381343e-18!GO:0050794;regulation of cellular process;1.20853137381343e-18!GO:0006512;ubiquitin cycle;1.52655570308571e-18!GO:0045449;regulation of transcription;2.08513692987743e-18!GO:0031980;mitochondrial lumen;1.73804888714759e-17!GO:0005759;mitochondrial matrix;1.73804888714759e-17!GO:0009719;response to endogenous stimulus;2.41089186943625e-17!GO:0006355;regulation of transcription, DNA-dependent;6.28434030258472e-17!GO:0006260;DNA replication;1.76784716919903e-16!GO:0006457;protein folding;5.50841757375633e-16!GO:0008135;translation factor activity, nucleic acid binding;7.11915097372843e-16!GO:0005746;mitochondrial respiratory chain;1.16561429725696e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.39834061167251e-15!GO:0000278;mitotic cell cycle;1.55837178722482e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;1.80704111312782e-15!GO:0000375;RNA splicing, via transesterification reactions;1.80704111312782e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.80704111312782e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.39181142993269e-15!GO:0012505;endomembrane system;9.24955167328016e-15!GO:0006366;transcription from RNA polymerase II promoter;1.60311437601238e-14!GO:0016887;ATPase activity;1.74613583276221e-14!GO:0050136;NADH dehydrogenase (quinone) activity;2.69519997767076e-14!GO:0003954;NADH dehydrogenase activity;2.69519997767076e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.69519997767076e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.35780299375122e-14!GO:0005761;mitochondrial ribosome;4.90281381113285e-14!GO:0000313;organellar ribosome;4.90281381113285e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;6.28690517669961e-14!GO:0006511;ubiquitin-dependent protein catabolic process;6.38066638337986e-14!GO:0042623;ATPase activity, coupled;6.86878592728376e-14!GO:0006605;protein targeting;7.40291955250625e-14!GO:0016604;nuclear body;7.44473505980788e-14!GO:0003712;transcription cofactor activity;9.18852362604489e-14!GO:0019941;modification-dependent protein catabolic process;9.37317870663257e-14!GO:0043632;modification-dependent macromolecule catabolic process;9.37317870663257e-14!GO:0044257;cellular protein catabolic process;1.77456795342896e-13!GO:0044265;cellular macromolecule catabolic process;1.95616173534665e-13!GO:0042254;ribosome biogenesis and assembly;2.29901845783395e-13!GO:0016568;chromatin modification;2.4307358926268e-13!GO:0050789;regulation of biological process;3.54565523428232e-13!GO:0005635;nuclear envelope;3.86413551668665e-13!GO:0022403;cell cycle phase;5.28334332364874e-13!GO:0031965;nuclear membrane;6.10198796667988e-13!GO:0006913;nucleocytoplasmic transport;7.26997264718869e-13!GO:0044453;nuclear membrane part;7.31890254478068e-13!GO:0051301;cell division;9.53838569512404e-13!GO:0004386;helicase activity;9.98391227012302e-13!GO:0032553;ribonucleotide binding;1.23008891574433e-12!GO:0032555;purine ribonucleotide binding;1.23008891574433e-12!GO:0051082;unfolded protein binding;1.24143674793028e-12!GO:0006333;chromatin assembly or disassembly;1.24376445341911e-12!GO:0042775;organelle ATP synthesis coupled electron transport;1.36646010002868e-12!GO:0042773;ATP synthesis coupled electron transport;1.36646010002868e-12!GO:0051169;nuclear transport;1.76380109281034e-12!GO:0016607;nuclear speck;2.08471906702168e-12!GO:0051726;regulation of cell cycle;2.17943580340724e-12!GO:0030964;NADH dehydrogenase complex (quinone);2.20337852105984e-12!GO:0045271;respiratory chain complex I;2.20337852105984e-12!GO:0005747;mitochondrial respiratory chain complex I;2.20337852105984e-12!GO:0003743;translation initiation factor activity;2.85806908461818e-12!GO:0017076;purine nucleotide binding;2.91858159723137e-12!GO:0000074;regulation of progression through cell cycle;3.04372259105989e-12!GO:0043285;biopolymer catabolic process;3.18898678427261e-12!GO:0048193;Golgi vesicle transport;3.27699050371137e-12!GO:0000087;M phase of mitotic cell cycle;5.6787323038495e-12!GO:0048770;pigment granule;5.74305785369283e-12!GO:0042470;melanosome;5.74305785369283e-12!GO:0043566;structure-specific DNA binding;5.83417582207399e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;6.67671372129644e-12!GO:0006413;translational initiation;6.78928124417149e-12!GO:0007067;mitosis;1.37476404335068e-11!GO:0005524;ATP binding;1.6834860450717e-11!GO:0032559;adenyl ribonucleotide binding;2.15618306566371e-11!GO:0000785;chromatin;5.33511430395517e-11!GO:0000279;M phase;5.98593976217536e-11!GO:0005643;nuclear pore;6.05974843013232e-11!GO:0006403;RNA localization;6.25621203990316e-11!GO:0065004;protein-DNA complex assembly;6.38279224877391e-11!GO:0005794;Golgi apparatus;6.9490141875948e-11!GO:0030554;adenyl nucleotide binding;7.0173250280598e-11!GO:0006446;regulation of translational initiation;7.6037280591873e-11!GO:0008026;ATP-dependent helicase activity;8.94340239930696e-11!GO:0050657;nucleic acid transport;9.13586467549345e-11!GO:0051236;establishment of RNA localization;9.13586467549345e-11!GO:0050658;RNA transport;9.13586467549345e-11!GO:0009057;macromolecule catabolic process;1.3029147440163e-10!GO:0006399;tRNA metabolic process;1.74674594424261e-10!GO:0030163;protein catabolic process;2.31648538558803e-10!GO:0008565;protein transporter activity;2.50226145360257e-10!GO:0000502;proteasome complex (sensu Eukaryota);3.01579735236784e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;7.33231817390463e-10!GO:0004812;aminoacyl-tRNA ligase activity;7.33231817390463e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;7.33231817390463e-10!GO:0043412;biopolymer modification;7.36251162804705e-10!GO:0017038;protein import;7.36251162804705e-10!GO:0015630;microtubule cytoskeleton;9.41941161243031e-10!GO:0044432;endoplasmic reticulum part;1.34299392055356e-09!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.71157678257295e-09!GO:0051186;cofactor metabolic process;1.72271908228069e-09!GO:0006364;rRNA processing;1.98113835863893e-09!GO:0043038;amino acid activation;2.06000413909276e-09!GO:0006418;tRNA aminoacylation for protein translation;2.06000413909276e-09!GO:0043039;tRNA aminoacylation;2.06000413909276e-09!GO:0031324;negative regulation of cellular metabolic process;2.32555831075856e-09!GO:0003697;single-stranded DNA binding;3.6427125937702e-09!GO:0016072;rRNA metabolic process;4.35471227338791e-09!GO:0051028;mRNA transport;5.11228996354497e-09!GO:0030532;small nuclear ribonucleoprotein complex;6.12891155517927e-09!GO:0006357;regulation of transcription from RNA polymerase II promoter;6.1963850171846e-09!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.53382845972091e-09!GO:0009892;negative regulation of metabolic process;7.67968181601228e-09!GO:0065002;intracellular protein transport across a membrane;9.46088332505814e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.07757994725425e-08!GO:0016481;negative regulation of transcription;1.12910269771969e-08!GO:0046930;pore complex;1.26362216495015e-08!GO:0005783;endoplasmic reticulum;1.57287181816918e-08!GO:0005667;transcription factor complex;1.62464007770843e-08!GO:0008639;small protein conjugating enzyme activity;1.65749890390968e-08!GO:0004842;ubiquitin-protein ligase activity;1.98069169452683e-08!GO:0006163;purine nucleotide metabolic process;1.98630429094711e-08!GO:0031497;chromatin assembly;2.18495108889302e-08!GO:0009259;ribonucleotide metabolic process;2.37270853826926e-08!GO:0006261;DNA-dependent DNA replication;2.42566997864792e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.53204441487523e-08!GO:0006334;nucleosome assembly;2.61594699500993e-08!GO:0006732;coenzyme metabolic process;2.90091769806044e-08!GO:0016192;vesicle-mediated transport;2.9694411888491e-08!GO:0006164;purine nucleotide biosynthetic process;3.4813702485407e-08!GO:0044248;cellular catabolic process;3.77019109684238e-08!GO:0006464;protein modification process;3.96932936781661e-08!GO:0019787;small conjugating protein ligase activity;6.83526840773338e-08!GO:0009150;purine ribonucleotide metabolic process;6.88608678711671e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;7.22841638038552e-08!GO:0043687;post-translational protein modification;7.56110499309292e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;7.90635705285237e-08!GO:0009260;ribonucleotide biosynthetic process;1.11931692438608e-07!GO:0009152;purine ribonucleotide biosynthetic process;1.20728241182145e-07!GO:0045333;cellular respiration;1.2400874305733e-07!GO:0016564;transcription repressor activity;1.58370357635671e-07!GO:0006461;protein complex assembly;1.73621242047412e-07!GO:0009060;aerobic respiration;2.27252609218943e-07!GO:0003682;chromatin binding;2.28897847388719e-07!GO:0016563;transcription activator activity;2.5325520060057e-07!GO:0000245;spliceosome assembly;2.59360656902621e-07!GO:0016779;nucleotidyltransferase activity;2.7955817808494e-07!GO:0003713;transcription coactivator activity;3.33086025929113e-07!GO:0015986;ATP synthesis coupled proton transport;3.92296510974237e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.92296510974237e-07!GO:0003702;RNA polymerase II transcription factor activity;4.26206773666026e-07!GO:0045786;negative regulation of progression through cell cycle;4.91519695346039e-07!GO:0009142;nucleoside triphosphate biosynthetic process;5.03215746273602e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.03215746273602e-07!GO:0006606;protein import into nucleus;5.87935409792387e-07!GO:0051170;nuclear import;7.03926673469735e-07!GO:0009141;nucleoside triphosphate metabolic process;7.40225872169797e-07!GO:0009199;ribonucleoside triphosphate metabolic process;7.69871798106151e-07!GO:0019829;cation-transporting ATPase activity;9.12623851433996e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;9.12770757901975e-07!GO:0042175;nuclear envelope-endoplasmic reticulum network;9.54602035443884e-07!GO:0016881;acid-amino acid ligase activity;1.04911440968327e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.07784770132336e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.12053257997168e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.12053257997168e-06!GO:0005789;endoplasmic reticulum membrane;1.2417836964536e-06!GO:0005793;ER-Golgi intermediate compartment;1.30299914298387e-06!GO:0000775;chromosome, pericentric region;1.37148405465197e-06!GO:0032446;protein modification by small protein conjugation;1.50583013785342e-06!GO:0005657;replication fork;1.52570971181375e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.62825059695708e-06!GO:0009144;purine nucleoside triphosphate metabolic process;1.62825059695708e-06!GO:0048523;negative regulation of cellular process;1.65679511111431e-06!GO:0045259;proton-transporting ATP synthase complex;1.6805909423495e-06!GO:0065007;biological regulation;1.90309496683954e-06!GO:0051188;cofactor biosynthetic process;2.34617699699674e-06!GO:0016363;nuclear matrix;2.40134279706943e-06!GO:0005768;endosome;2.43505619648342e-06!GO:0005813;centrosome;2.61479298447118e-06!GO:0003690;double-stranded DNA binding;3.17399019001762e-06!GO:0006888;ER to Golgi vesicle-mediated transport;3.37365602609837e-06!GO:0006754;ATP biosynthetic process;3.70095201054341e-06!GO:0006753;nucleoside phosphate metabolic process;3.70095201054341e-06!GO:0000151;ubiquitin ligase complex;3.93873638266837e-06!GO:0006099;tricarboxylic acid cycle;4.5852167683557e-06!GO:0046356;acetyl-CoA catabolic process;4.5852167683557e-06!GO:0016567;protein ubiquitination;4.82711094375901e-06!GO:0005819;spindle;5.05814277433638e-06!GO:0005815;microtubule organizing center;6.62192510977157e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;6.82944378801293e-06!GO:0046034;ATP metabolic process;7.08063973600949e-06!GO:0008270;zinc ion binding;7.15215183911109e-06!GO:0008094;DNA-dependent ATPase activity;8.08656850424552e-06!GO:0045892;negative regulation of transcription, DNA-dependent;8.66250761453261e-06!GO:0009055;electron carrier activity;8.74625997088002e-06!GO:0003899;DNA-directed RNA polymerase activity;9.60221862239591e-06!GO:0044440;endosomal part;1.01938851704367e-05!GO:0010008;endosome membrane;1.01938851704367e-05!GO:0003724;RNA helicase activity;1.09744927762364e-05!GO:0015078;hydrogen ion transmembrane transporter activity;1.18823192165725e-05!GO:0003714;transcription corepressor activity;1.38580278326124e-05!GO:0006084;acetyl-CoA metabolic process;1.55020215702766e-05!GO:0051329;interphase of mitotic cell cycle;1.68977170744694e-05!GO:0016469;proton-transporting two-sector ATPase complex;1.79262064910271e-05!GO:0043623;cellular protein complex assembly;1.80316926786429e-05!GO:0006613;cotranslational protein targeting to membrane;1.93826513048741e-05!GO:0009109;coenzyme catabolic process;2.51926572710174e-05!GO:0003729;mRNA binding;2.53178694061866e-05!GO:0000314;organellar small ribosomal subunit;3.0221586897785e-05!GO:0005763;mitochondrial small ribosomal subunit;3.0221586897785e-05!GO:0009108;coenzyme biosynthetic process;3.06358076537357e-05!GO:0051246;regulation of protein metabolic process;3.21182639025794e-05!GO:0051168;nuclear export;3.38871267108582e-05!GO:0048519;negative regulation of biological process;4.20184103819797e-05!GO:0005770;late endosome;4.4729571134343e-05!GO:0005762;mitochondrial large ribosomal subunit;4.72332215127499e-05!GO:0000315;organellar large ribosomal subunit;4.72332215127499e-05!GO:0044431;Golgi apparatus part;5.41362684916715e-05!GO:0009117;nucleotide metabolic process;5.68414876311972e-05!GO:0000075;cell cycle checkpoint;5.80341672076669e-05!GO:0003684;damaged DNA binding;6.11296868259353e-05!GO:0006752;group transfer coenzyme metabolic process;6.59296902404877e-05!GO:0006338;chromatin remodeling;6.59561782847202e-05!GO:0048475;coated membrane;7.94774603869064e-05!GO:0030117;membrane coat;7.94774603869064e-05!GO:0051427;hormone receptor binding;8.17024512408385e-05!GO:0015631;tubulin binding;8.37594563244407e-05!GO:0007005;mitochondrion organization and biogenesis;9.55735689136197e-05!GO:0031982;vesicle;9.68202610791089e-05!GO:0007051;spindle organization and biogenesis;0.000101192093502596!GO:0019899;enzyme binding;0.000115067627241262!GO:0031988;membrane-bound vesicle;0.000126133490493611!GO:0005798;Golgi-associated vesicle;0.000143417285016271!GO:0005874;microtubule;0.000143417285016271!GO:0031410;cytoplasmic vesicle;0.000147068356690358!GO:0051325;interphase;0.000152765421902135!GO:0005769;early endosome;0.000155840245373524!GO:0030120;vesicle coat;0.000158311236843265!GO:0030662;coated vesicle membrane;0.000158311236843265!GO:0035257;nuclear hormone receptor binding;0.000162800766038278!GO:0016741;transferase activity, transferring one-carbon groups;0.000179979136300894!GO:0005788;endoplasmic reticulum lumen;0.000183659006213368!GO:0000776;kinetochore;0.000183659006213368!GO:0016023;cytoplasmic membrane-bound vesicle;0.000184583870900412!GO:0043021;ribonucleoprotein binding;0.000188282909764124!GO:0006383;transcription from RNA polymerase III promoter;0.000188282909764124!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000215513710020598!GO:0008168;methyltransferase activity;0.000223629554789903!GO:0006302;double-strand break repair;0.000254525040681414!GO:0006414;translational elongation;0.000262080725375233!GO:0006310;DNA recombination;0.000262080725375233!GO:0004527;exonuclease activity;0.000281111324643691!GO:0003678;DNA helicase activity;0.000321934398600547!GO:0008186;RNA-dependent ATPase activity;0.000330352262148184!GO:0032508;DNA duplex unwinding;0.000338057799183423!GO:0032392;DNA geometric change;0.000338057799183423!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000347518028174905!GO:0016853;isomerase activity;0.000349070038153438!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000369556606847039!GO:0006402;mRNA catabolic process;0.000384770084841785!GO:0012501;programmed cell death;0.000392338549983924!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000396665940934182!GO:0051187;cofactor catabolic process;0.000438791787962542!GO:0031072;heat shock protein binding;0.000445610529257202!GO:0003924;GTPase activity;0.000510507630453126!GO:0006289;nucleotide-excision repair;0.000558174771264315!GO:0007017;microtubule-based process;0.000577668526620228!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00059351889693974!GO:0043681;protein import into mitochondrion;0.000602754814852058!GO:0006915;apoptosis;0.000653337757895916!GO:0046914;transition metal ion binding;0.000667432454436616!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00068584224054561!GO:0000786;nucleosome;0.000692601622723636!GO:0006268;DNA unwinding during replication;0.000759164816769177!GO:0019843;rRNA binding;0.000798682016316594!GO:0005048;signal sequence binding;0.000801866049378179!GO:0009056;catabolic process;0.000807920967272373!GO:0008219;cell death;0.000814090382013766!GO:0016265;death;0.000814090382013766!GO:0008654;phospholipid biosynthetic process;0.000850571961088948!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000887320546896561!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000965566063018682!GO:0004004;ATP-dependent RNA helicase activity;0.00101770917263571!GO:0006793;phosphorus metabolic process;0.00109202400283938!GO:0006796;phosphate metabolic process;0.00109202400283938!GO:0000139;Golgi membrane;0.00109937406953286!GO:0006612;protein targeting to membrane;0.0010995225276545!GO:0030867;rough endoplasmic reticulum membrane;0.00111552977885989!GO:0006891;intra-Golgi vesicle-mediated transport;0.00117073611767754!GO:0051087;chaperone binding;0.00127637419845965!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0012785827106007!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0012785827106007!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0012785827106007!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00133167519634492!GO:0015399;primary active transmembrane transporter activity;0.00133167519634492!GO:0016740;transferase activity;0.00133167519634492!GO:0005839;proteasome core complex (sensu Eukaryota);0.00134468303618883!GO:0046474;glycerophospholipid biosynthetic process;0.0013965990123562!GO:0006401;RNA catabolic process;0.0013965990123562!GO:0006284;base-excision repair;0.00141811513039694!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00149005351348986!GO:0005637;nuclear inner membrane;0.00160515783007042!GO:0008017;microtubule binding;0.00164873032604677!GO:0005876;spindle microtubule;0.00173698220499762!GO:0006405;RNA export from nucleus;0.00178438773694709!GO:0000792;heterochromatin;0.00182363823843602!GO:0051920;peroxiredoxin activity;0.00182730900605652!GO:0007010;cytoskeleton organization and biogenesis;0.00190104880683944!GO:0000059;protein import into nucleus, docking;0.001945993912518!GO:0009165;nucleotide biosynthetic process;0.00210075744891834!GO:0005684;U2-dependent spliceosome;0.00218205894480498!GO:0006650;glycerophospholipid metabolic process;0.00219409962306801!GO:0048471;perinuclear region of cytoplasm;0.00224888193970072!GO:0032200;telomere organization and biogenesis;0.00249013491756619!GO:0000723;telomere maintenance;0.00249013491756619!GO:0006352;transcription initiation;0.00249088398542904!GO:0044452;nucleolar part;0.00250116688990089!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00250344048370355!GO:0007052;mitotic spindle organization and biogenesis;0.00264682022622209!GO:0003746;translation elongation factor activity;0.00266297256538042!GO:0008022;protein C-terminus binding;0.00270292737564451!GO:0008139;nuclear localization sequence binding;0.00296694412547565!GO:0008250;oligosaccharyl transferase complex;0.00297105354708183!GO:0007050;cell cycle arrest;0.00301554093856121!GO:0000082;G1/S transition of mitotic cell cycle;0.00303981543684313!GO:0032259;methylation;0.00304082356594963!GO:0000049;tRNA binding;0.00307168265502213!GO:0048500;signal recognition particle;0.00308731608521322!GO:0015980;energy derivation by oxidation of organic compounds;0.00320438143258149!GO:0051052;regulation of DNA metabolic process;0.00338491493798263!GO:0016310;phosphorylation;0.00341076388974571!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00349183319607433!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00349183319607433!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0036237904650225!GO:0045045;secretory pathway;0.00365648429125414!GO:0008276;protein methyltransferase activity;0.00370105144781031!GO:0030133;transport vesicle;0.00384817238093575!GO:0008033;tRNA processing;0.00389475926433622!GO:0004576;oligosaccharyl transferase activity;0.00394090818596519!GO:0051789;response to protein stimulus;0.00399819168894432!GO:0006986;response to unfolded protein;0.00399819168894432!GO:0004298;threonine endopeptidase activity;0.00419035364731398!GO:0007093;mitotic cell cycle checkpoint;0.00419035364731398!GO:0031124;mRNA 3'-end processing;0.00423630062490685!GO:0040029;regulation of gene expression, epigenetic;0.00423954456792974!GO:0045454;cell redox homeostasis;0.00452581417704622!GO:0016787;hydrolase activity;0.00453978286859162!GO:0004518;nuclease activity;0.00456291306900647!GO:0045893;positive regulation of transcription, DNA-dependent;0.00461199029749188!GO:0008312;7S RNA binding;0.00461495317567389!GO:0030880;RNA polymerase complex;0.00479549601171482!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00532817461746762!GO:0043414;biopolymer methylation;0.00535238176610026!GO:0006626;protein targeting to mitochondrion;0.00538741188986641!GO:0007006;mitochondrial membrane organization and biogenesis;0.00567393715508824!GO:0000922;spindle pole;0.00567393715508824!GO:0030027;lamellipodium;0.00619406944181205!GO:0016251;general RNA polymerase II transcription factor activity;0.00620257681037581!GO:0000339;RNA cap binding;0.00620257681037581!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00674246580317109!GO:0005525;GTP binding;0.0068385198119018!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00716003250410011!GO:0046489;phosphoinositide biosynthetic process;0.00732755370163268!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00733267801086926!GO:0030384;phosphoinositide metabolic process;0.00758920090838629!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00759338543619901!GO:0045047;protein targeting to ER;0.00759338543619901!GO:0006378;mRNA polyadenylation;0.00759338543619901!GO:0006839;mitochondrial transport;0.00759615541794596!GO:0033116;ER-Golgi intermediate compartment membrane;0.00768641697378156!GO:0016584;nucleosome positioning;0.00780798793823995!GO:0007059;chromosome segregation;0.00794613681386987!GO:0005885;Arp2/3 protein complex;0.00799468048556382!GO:0031968;organelle outer membrane;0.00799500046598777!GO:0000228;nuclear chromosome;0.00851851235210891!GO:0048487;beta-tubulin binding;0.00851851235210891!GO:0000781;chromosome, telomeric region;0.00852825176086533!GO:0006916;anti-apoptosis;0.00880819021801467!GO:0003711;transcription elongation regulator activity;0.00892586447364281!GO:0006595;polyamine metabolic process;0.00904607439551154!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00920011550773062!GO:0000428;DNA-directed RNA polymerase complex;0.00920011550773062!GO:0006376;mRNA splice site selection;0.00939378726958535!GO:0000389;nuclear mRNA 3'-splice site recognition;0.00939378726958535!GO:0005791;rough endoplasmic reticulum;0.00956982315633065!GO:0007021;tubulin folding;0.00988248235839517!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.0101118862617438!GO:0007004;telomere maintenance via telomerase;0.010151422724807!GO:0008154;actin polymerization and/or depolymerization;0.0105182016518263!GO:0005741;mitochondrial outer membrane;0.0105182016518263!GO:0030134;ER to Golgi transport vesicle;0.010586486317909!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0110335402573485!GO:0031625;ubiquitin protein ligase binding;0.0110832298695528!GO:0043284;biopolymer biosynthetic process;0.011437144589467!GO:0043492;ATPase activity, coupled to movement of substances;0.0115371585833845!GO:0051252;regulation of RNA metabolic process;0.0116539408947236!GO:0043596;nuclear replication fork;0.0116539408947236!GO:0019867;outer membrane;0.0117168529084323!GO:0007088;regulation of mitosis;0.0117201748317842!GO:0031123;RNA 3'-end processing;0.0124183202433176!GO:0031902;late endosome membrane;0.012741397396388!GO:0031901;early endosome membrane;0.0128216005704253!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0129261742703682!GO:0016272;prefoldin complex;0.0129263707367712!GO:0051128;regulation of cellular component organization and biogenesis;0.013012469259957!GO:0030137;COPI-coated vesicle;0.0130168698033624!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0131429749543917!GO:0015002;heme-copper terminal oxidase activity;0.0131429749543917!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0131429749543917!GO:0004129;cytochrome-c oxidase activity;0.0131429749543917!GO:0000178;exosome (RNase complex);0.0134036213036706!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0134164898197355!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0136576341002939!GO:0030663;COPI coated vesicle membrane;0.0139793344612007!GO:0030126;COPI vesicle coat;0.0139793344612007!GO:0031252;leading edge;0.0140481372615103!GO:0005832;chaperonin-containing T-complex;0.0140975694112496!GO:0005844;polysome;0.0142389338948262!GO:0016859;cis-trans isomerase activity;0.0143545058617138!GO:0004003;ATP-dependent DNA helicase activity;0.0147230338127171!GO:0043087;regulation of GTPase activity;0.0154516840257736!GO:0043022;ribosome binding;0.0154571202279785!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0155820499489409!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.015686297835204!GO:0005096;GTPase activator activity;0.0157366459708718!GO:0008180;signalosome;0.0160569986197518!GO:0051287;NAD binding;0.0169279883199992!GO:0006505;GPI anchor metabolic process;0.0170903447245169!GO:0006818;hydrogen transport;0.0172545678865917!GO:0003706;ligand-regulated transcription factor activity;0.0172609586332297!GO:0045941;positive regulation of transcription;0.0174234998040663!GO:0008097;5S rRNA binding;0.0175886190616438!GO:0016585;chromatin remodeling complex;0.0182053094643491!GO:0030508;thiol-disulfide exchange intermediate activity;0.0183174795863031!GO:0005521;lamin binding;0.0184533631223953!GO:0031628;opioid receptor binding;0.0186536297154852!GO:0031852;mu-type opioid receptor binding;0.0186536297154852!GO:0006892;post-Golgi vesicle-mediated transport;0.0191910397497733!GO:0030127;COPII vesicle coat;0.0191910397497733!GO:0012507;ER to Golgi transport vesicle membrane;0.0191910397497733!GO:0018196;peptidyl-asparagine modification;0.0191910397497733!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0191910397497733!GO:0044450;microtubule organizing center part;0.0192185466621848!GO:0005869;dynactin complex;0.0194880240463659!GO:0046966;thyroid hormone receptor binding;0.0201734816988084!GO:0042981;regulation of apoptosis;0.0202113805948743!GO:0015992;proton transport;0.020251302726641!GO:0043069;negative regulation of programmed cell death;0.0204528264641881!GO:0006278;RNA-dependent DNA replication;0.0213369316258188!GO:0051539;4 iron, 4 sulfur cluster binding;0.0221143001020752!GO:0044454;nuclear chromosome part;0.0222872347467511!GO:0000123;histone acetyltransferase complex;0.0228862189827316!GO:0006220;pyrimidine nucleotide metabolic process;0.0233120693704953!GO:0043067;regulation of programmed cell death;0.0234883922634899!GO:0043066;negative regulation of apoptosis;0.0237006362625596!GO:0030041;actin filament polymerization;0.0240956402567716!GO:0043624;cellular protein complex disassembly;0.0242499029612412!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0244748200216433!GO:0006611;protein export from nucleus;0.0244804865908306!GO:0030036;actin cytoskeleton organization and biogenesis;0.0248681409022756!GO:0000790;nuclear chromatin;0.0255148222108676!GO:0004177;aminopeptidase activity;0.0258641439643307!GO:0006270;DNA replication initiation;0.0264355261965374!GO:0016197;endosome transport;0.0270809331370829!GO:0009081;branched chain family amino acid metabolic process;0.0283526837233907!GO:0043631;RNA polyadenylation;0.0283526837233907!GO:0000118;histone deacetylase complex;0.0284754641792878!GO:0042393;histone binding;0.0286226358040685!GO:0033673;negative regulation of kinase activity;0.029645420350337!GO:0006469;negative regulation of protein kinase activity;0.029645420350337!GO:0005669;transcription factor TFIID complex;0.0299957117273305!GO:0017134;fibroblast growth factor binding;0.0302870715761669!GO:0006144;purine base metabolic process;0.0304030784836797!GO:0065009;regulation of a molecular function;0.0311168029214446!GO:0032561;guanyl ribonucleotide binding;0.03148980581163!GO:0019001;guanyl nucleotide binding;0.03148980581163!GO:0032984;macromolecular complex disassembly;0.0321457048436301!GO:0043488;regulation of mRNA stability;0.0323046467053379!GO:0043487;regulation of RNA stability;0.0323046467053379!GO:0009303;rRNA transcription;0.0323234199387254!GO:0008408;3'-5' exonuclease activity;0.0325976651578259!GO:0003725;double-stranded RNA binding;0.0329264124278989!GO:0030833;regulation of actin filament polymerization;0.0329264124278989!GO:0051540;metal cluster binding;0.0330053916096272!GO:0051536;iron-sulfur cluster binding;0.0330053916096272!GO:0000725;recombinational repair;0.0330754496486719!GO:0000724;double-strand break repair via homologous recombination;0.0330754496486719!GO:0051101;regulation of DNA binding;0.0338219090268288!GO:0035258;steroid hormone receptor binding;0.0345638894023429!GO:0005938;cell cortex;0.0346110586828986!GO:0008320;protein transmembrane transporter activity;0.0347809640272825!GO:0035267;NuA4 histone acetyltransferase complex;0.0348498608024902!GO:0017166;vinculin binding;0.0349054040967725!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0349781156537788!GO:0006406;mRNA export from nucleus;0.0351318300449172!GO:0005784;translocon complex;0.0351376670581633!GO:0016407;acetyltransferase activity;0.0351893946622495!GO:0042802;identical protein binding;0.0352350260323216!GO:0006506;GPI anchor biosynthetic process;0.0353125006680787!GO:0000910;cytokinesis;0.0354262120090027!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0364539376498026!GO:0005773;vacuole;0.0370912327255988!GO:0006541;glutamine metabolic process;0.0372537155055696!GO:0000726;non-recombinational repair;0.0377544824461141!GO:0043601;nuclear replisome;0.0385537689146916!GO:0030894;replisome;0.0385537689146916!GO:0043130;ubiquitin binding;0.0385537689146916!GO:0032182;small conjugating protein binding;0.0385537689146916!GO:0051098;regulation of binding;0.0386015261735869!GO:0030658;transport vesicle membrane;0.038738018257279!GO:0000209;protein polyubiquitination;0.0405190993513878!GO:0005875;microtubule associated complex;0.0406492681923493!GO:0016569;covalent chromatin modification;0.0412022066146629!GO:0031570;DNA integrity checkpoint;0.0418319927318548!GO:0051348;negative regulation of transferase activity;0.0418738341758424!GO:0016126;sterol biosynthetic process;0.0421989217286164!GO:0019783;small conjugating protein-specific protease activity;0.0422702565021135!GO:0031461;cullin-RING ubiquitin ligase complex;0.0427129082438958!GO:0003756;protein disulfide isomerase activity;0.0427822604258304!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0427822604258304!GO:0042054;histone methyltransferase activity;0.0435718397968651!GO:0008047;enzyme activator activity;0.0437081800039712!GO:0042769;DNA damage response, detection of DNA damage;0.04440242026125!GO:0004286;proprotein convertase 2 activity;0.044486176047262!GO:0032039;integrator complex;0.0445258231181093!GO:0047485;protein N-terminus binding;0.0445723398433171!GO:0007034;vacuolar transport;0.0452600291350043!GO:0042788;polysomal ribosome;0.0452600291350043!GO:0000096;sulfur amino acid metabolic process;0.0453230162547038!GO:0006607;NLS-bearing substrate import into nucleus;0.0455148886066604!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0455148886066604!GO:0030521;androgen receptor signaling pathway;0.0455710442851756!GO:0004532;exoribonuclease activity;0.0455877894387545!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0455877894387545!GO:0031529;ruffle organization and biogenesis;0.0458648730108452!GO:0005881;cytoplasmic microtubule;0.0462856401665232!GO:0043189;H4/H2A histone acetyltransferase complex;0.0464410936932043!GO:0005663;DNA replication factor C complex;0.0466696392829226!GO:0046467;membrane lipid biosynthetic process;0.0470012766799277!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0482385567978635!GO:0046822;regulation of nucleocytoplasmic transport;0.0484777748518708!GO:0006984;ER-nuclear signaling pathway;0.0487247217288035!GO:0000097;sulfur amino acid biosynthetic process;0.0492847605022576!GO:0006509;membrane protein ectodomain proteolysis;0.0495968380116156!GO:0033619;membrane protein proteolysis;0.0495968380116156 | |||
|sample_id=10637 | |||
|sample_note= | |||
|sample_sex=male | |||
|sample_species=Human (Homo sapiens) | |||
|sample_strain= | |||
|sample_tissue=kidney | |||
|top_motifs=NKX6-1,2:3.2117414314;IKZF2:3.16310049102;PAX4:3.02241855323;TOPORS:2.98680204351;CDX1,2,4:2.84866469587;ZBTB16:2.68426571475;FOXD3:2.57939425937;PITX1..3:2.35544591017;POU1F1:2.2946527155;FOXP1:2.20852644902;AIRE:2.15658008838;POU6F1:2.12312647667;AHR_ARNT_ARNT2:1.96977349162;ALX1:1.91033282309;PRDM1:1.86313606459;TEF:1.85532534178;NRF1:1.78788629145;CDC5L:1.65126949963;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.63001132501;FOXM1:1.62521691373;POU3F1..4:1.61957373348;YY1:1.57728739344;BPTF:1.52007532672;BREu{core}:1.47967031619;DBP:1.46568071778;NKX3-1:1.4391506165;ZNF143:1.3920310495;CUX2:1.38851482001;GATA4:1.37983978822;ZNF384:1.35716143038;LHX3,4:1.27882681945;NKX2-3_NKX2-5:1.26704957657;RREB1:1.26494055291;PAX6:1.26289479742;PRRX1,2:1.25654889184;ZFP161:1.23355955952;HOX{A6,A7,B6,B7}:1.19539795513;ATF5_CREB3:1.17786294561;MZF1:1.14075936504;E2F1..5:1.12881877581;HOX{A5,B5}:1.11778514265;SOX5:1.0829503404;OCT4_SOX2{dimer}:1.06297303726;STAT1,3:1.02085057685;ONECUT1,2:1.01674501713;ARID5B:1.01265193867;PATZ1:0.972524354152;GFI1:0.949008389167;POU5F1:0.895582347461;PBX1:0.888216314559;STAT5{A,B}:0.875477331014;RFX1:0.87430472425;NKX2-1,4:0.865578429994;EVI1:0.860694635705;PAX8:0.841858070978;ELK1,4_GABP{A,B1}:0.811064427972;ATF6:0.773605300001;POU2F1..3:0.764303157064;NANOG{mouse}:0.76267294924;FOXN1:0.748733943895;SOX{8,9,10}:0.747648932992;EGR1..3:0.732448001436;HBP1_HMGB_SSRP1_UBTF:0.71412096103;PAX3,7:0.711417635607;RBPJ:0.68706853024;UFEwm:0.685291895262;SOX17:0.672172621052;RFX2..5_RFXANK_RFXAP:0.642436093783;FOXL1:0.631196326422;KLF4:0.607334094389;ATF4:0.603547770947;SOX2:0.602561826611;FOXQ1:0.600260599108;DMAP1_NCOR{1,2}_SMARC:0.583201036821;GFI1B:0.547341925674;TFDP1:0.535601115347;GTF2I:0.468887648819;ALX4:0.437648863746;NFY{A,B,C}:0.436812223766;HOX{A4,D4}:0.409626980158;MAZ:0.389896156763;CREB1:0.389874698481;PDX1:0.383368542295;REST:0.361292757666;T:0.291504523967;FOX{D1,D2}:0.276417065033;FOX{I1,J2}:0.272952780393;GZF1:0.260288145977;HOXA9_MEIS1:0.238054201985;MEF2{A,B,C,D}:0.205866312431;ZIC1..3:0.196808258439;EN1,2:0.190332507887;NANOG:0.16119875593;HMGA1,2:0.147336836378;ADNP_IRX_SIX_ZHX:0.123866100935;ZBTB6:0.0872588931267;MTE{core}:0.032522941174;TAL1_TCF{3,4,12}:0.0189271376356;MYB:0.0167542556532;MYFfamily:-0.00830716633472;GTF2A1,2:-0.0265875794736;RORA:-0.0309548515215;NR6A1:-0.043032023887;MED-1{core}:-0.0645408099156;LEF1_TCF7_TCF7L1,2:-0.121078769203;bHLH_family:-0.141865024534;FOXA2:-0.150563614363;CRX:-0.166819122931;MYBL2:-0.194189634232;SREBF1,2:-0.249012001207;RXR{A,B,G}:-0.251131031644;HMX1:-0.25241335626;FOXP3:-0.254293040134;RUNX1..3:-0.27790784571;TFAP2B:-0.301715366575;PAX2:-0.308191870634;PAX5:-0.309061127456;NHLH1,2:-0.374477862479;JUN:-0.379914955723;TEAD1:-0.380393564904;TLX1..3_NFIC{dimer}:-0.381107220515;SPIB:-0.383550334241;FOXO1,3,4:-0.388687012083;HNF4A_NR2F1,2:-0.395521356721;PAX1,9:-0.411217027759;HNF1A:-0.412881625713;TLX2:-0.421724696887;ZNF423:-0.46433313292;ZNF238:-0.550040497714;XBP1:-0.558767733625;NR1H4:-0.56590200069;IRF1,2:-0.571577051791;NFKB1_REL_RELA:-0.605357767607;SNAI1..3:-0.620196906071;ELF1,2,4:-0.624272744071;NFE2L1:-0.62825035249;GATA6:-0.637595446775;AR:-0.652701081771;MTF1:-0.658449454352;SPI1:-0.662859063606;HIC1:-0.675569623998;ATF2:-0.693050761035;NR3C1:-0.699200601841;CEBPA,B_DDIT3:-0.715886903018;HSF1,2:-0.756911966705;TGIF1:-0.789315448618;NFATC1..3:-0.844192516525;LMO2:-0.849855356259;ZEB1:-0.885313185105;EP300:-0.893445910595;TBP:-0.897496562515;HLF:-0.919875401302;IKZF1:-0.950162727877;GCM1,2:-0.950456733439;NFIL3:-0.950648214695;FOS_FOS{B,L1}_JUN{B,D}:-0.95694705843;NFE2:-0.978863495178;HIF1A:-1.02570857932;TP53:-1.02571983516;NKX3-2:-1.02620438596;FOX{F1,F2,J1}:-1.02928882755;FOSL2:-1.03103100544;ETS1,2:-1.04833153206;NFIX:-1.05610760626;GLI1..3:-1.05769991395;SPZ1:-1.06117324807;BACH2:-1.07777214816;SRF:-1.08187340733;SP1:-1.10293119802;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.1215243404;IRF7:-1.1673377492;HAND1,2:-1.24765038316;NFE2L2:-1.27884941196;XCPE1{core}:-1.2852257834;TFAP2{A,C}:-1.29678778017;NR5A1,2:-1.33411831625;STAT2,4,6:-1.43201951077;NKX2-2,8:-1.45278942757;EBF1:-1.45530073578;SMAD1..7,9:-1.47883299322;MAFB:-1.55484978281;MYOD1:-1.70168503917;RXRA_VDR{dimer}:-1.85006631977;TFAP4:-1.85198804639;HES1:-1.95264498618;TBX4,5:-2.01037339945;ESR1:-2.03513756423;VSX1,2:-2.13531230176;ESRRA:-2.51314983406;ZNF148:-2.61095019281;PPARG:-2.99969170461;TFCP2:-3.01367767276 | |||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10637-108I7;search_select_hide=table117:FF:10637-108I7 | |||
}} | }} | ||
Latest revision as of 14:32, 3 June 2020
| Name: | neuroectodermal tumor cell line:FU-RPNT-1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11744 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11744
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11744
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.717 |
| 10 | 10 | 0.852 |
| 100 | 100 | 0.476 |
| 101 | 101 | 0.861 |
| 102 | 102 | 0.509 |
| 103 | 103 | 0.0533 |
| 104 | 104 | 0.303 |
| 105 | 105 | 0.207 |
| 106 | 106 | 2.19928e-4 |
| 107 | 107 | 0.016 |
| 108 | 108 | 0.603 |
| 109 | 109 | 0.00552 |
| 11 | 11 | 0.233 |
| 110 | 110 | 0.532 |
| 111 | 111 | 0.408 |
| 112 | 112 | 0.464 |
| 113 | 113 | 0.442 |
| 114 | 114 | 0.234 |
| 115 | 115 | 0.412 |
| 116 | 116 | 0.454 |
| 117 | 117 | 0.665 |
| 118 | 118 | 0.811 |
| 119 | 119 | 0.734 |
| 12 | 12 | 0.488 |
| 120 | 120 | 0.754 |
| 121 | 121 | 0.069 |
| 122 | 122 | 0.0392 |
| 123 | 123 | 0.047 |
| 124 | 124 | 0.899 |
| 125 | 125 | 0.992 |
| 126 | 126 | 0.26 |
| 127 | 127 | 0.146 |
| 128 | 128 | 0.0371 |
| 129 | 129 | 0.52 |
| 13 | 13 | 0.694 |
| 130 | 130 | 0.83 |
| 131 | 131 | 0.302 |
| 132 | 132 | 0.645 |
| 133 | 133 | 0.874 |
| 134 | 134 | 0.72 |
| 135 | 135 | 0.206 |
| 136 | 136 | 0.0583 |
| 137 | 137 | 0.465 |
| 138 | 138 | 0.879 |
| 139 | 139 | 0.192 |
| 14 | 14 | 0.561 |
| 140 | 140 | 0.507 |
| 141 | 141 | 0.255 |
| 142 | 142 | 0.416 |
| 143 | 143 | 0.0217 |
| 144 | 144 | 0.408 |
| 145 | 145 | 0.739 |
| 146 | 146 | 0.635 |
| 147 | 147 | 0.741 |
| 148 | 148 | 0.0345 |
| 149 | 149 | 0.0836 |
| 15 | 15 | 0.38 |
| 150 | 150 | 0.238 |
| 151 | 151 | 0.308 |
| 152 | 152 | 0.00116 |
| 153 | 153 | 0.988 |
| 154 | 154 | 0.535 |
| 155 | 155 | 0.916 |
| 156 | 156 | 0.655 |
| 157 | 157 | 0.703 |
| 158 | 158 | 0.142 |
| 159 | 159 | 0.0102 |
| 16 | 16 | 0.163 |
| 160 | 160 | 0.752 |
| 161 | 161 | 0.525 |
| 162 | 162 | 0.443 |
| 163 | 163 | 0.533 |
| 164 | 164 | 0.628 |
| 165 | 165 | 0.826 |
| 166 | 166 | 0.897 |
| 167 | 167 | 0.588 |
| 168 | 168 | 0.246 |
| 169 | 169 | 0.0208 |
| 17 | 17 | 0.109 |
| 18 | 18 | 0.264 |
| 19 | 19 | 0.081 |
| 2 | 2 | 0.0942 |
| 20 | 20 | 0.702 |
| 21 | 21 | 0.574 |
| 22 | 22 | 0.0451 |
| 23 | 23 | 0.0295 |
| 24 | 24 | 0.0618 |
| 25 | 25 | 0.679 |
| 26 | 26 | 0.336 |
| 27 | 27 | 0.231 |
| 28 | 28 | 0.864 |
| 29 | 29 | 0.67 |
| 3 | 3 | 0.859 |
| 30 | 30 | 0.14 |
| 31 | 31 | 0.52 |
| 32 | 32 | 0.05 |
| 33 | 33 | 0.674 |
| 34 | 34 | 0.246 |
| 35 | 35 | 0.729 |
| 36 | 36 | 0.239 |
| 37 | 37 | 0.0766 |
| 38 | 38 | 0.375 |
| 39 | 39 | 0.313 |
| 4 | 4 | 0.942 |
| 40 | 40 | 0.281 |
| 41 | 41 | 0.0753 |
| 42 | 42 | 0.783 |
| 43 | 43 | 0.369 |
| 44 | 44 | 0.139 |
| 45 | 45 | 0.171 |
| 46 | 46 | 0.358 |
| 47 | 47 | 0.674 |
| 48 | 48 | 0.508 |
| 49 | 49 | 0.554 |
| 5 | 5 | 0.407 |
| 50 | 50 | 0.503 |
| 51 | 51 | 0.616 |
| 52 | 52 | 0.0988 |
| 53 | 53 | 0.796 |
| 54 | 54 | 0.26 |
| 55 | 55 | 0.834 |
| 56 | 56 | 0.477 |
| 57 | 57 | 0.545 |
| 58 | 58 | 0.601 |
| 59 | 59 | 0.0155 |
| 6 | 6 | 0.565 |
| 60 | 60 | 0.0311 |
| 61 | 61 | 0.508 |
| 62 | 62 | 0.291 |
| 63 | 63 | 0.427 |
| 64 | 64 | 0.83 |
| 65 | 65 | 0.152 |
| 66 | 66 | 0.461 |
| 67 | 67 | 0.82 |
| 68 | 68 | 0.518 |
| 69 | 69 | 0.338 |
| 7 | 7 | 0.465 |
| 70 | 70 | 0.0614 |
| 71 | 71 | 0.373 |
| 72 | 72 | 0.29 |
| 73 | 73 | 0.00186 |
| 74 | 74 | 0.714 |
| 75 | 75 | 0.556 |
| 76 | 76 | 0.303 |
| 77 | 77 | 0.0222 |
| 78 | 78 | 0.451 |
| 79 | 79 | 0.721 |
| 8 | 8 | 0.466 |
| 80 | 80 | 0.0444 |
| 81 | 81 | 0.847 |
| 82 | 82 | 0.828 |
| 83 | 83 | 0.563 |
| 84 | 84 | 0.741 |
| 85 | 85 | 0.0519 |
| 86 | 86 | 0.613 |
| 87 | 87 | 0.00554 |
| 88 | 88 | 0.664 |
| 89 | 89 | 0.0272 |
| 9 | 9 | 0.0972 |
| 90 | 90 | 0.282 |
| 91 | 91 | 0.382 |
| 92 | 92 | 0.076 |
| 93 | 93 | 0.907 |
| 94 | 94 | 0.24 |
| 95 | 95 | 0.0156 |
| 96 | 96 | 0.437 |
| 97 | 97 | 0.786 |
| 98 | 98 | 0.343 |
| 99 | 99 | 0.826 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11744
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
DOID:171 neuroectodermal tumor
EFO:0002091 biological replicate
FF:0000003 cell line sample
FF:0000210 human sample
UBERON:0002346 neurectoderm
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
171 (neuroectodermal tumor)
3095 (germ cell and embryonal cancer)
2994 (germ cell cancer)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000479 (tissue)
0002346 (neurectoderm)
0004121 (ectoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000923 (germ layer)
0002050 (embryonic structure)
0005423 (developing anatomical structure)
0001062 (anatomical entity)
0010316 (germ layer / neural crest)
0005291 (embryonic tissue)
0010317 (germ layer / neural crest derived structure)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)
