FF:11655-122E8: Difference between revisions

Latest revision as of 18:13, 4 June 2020

Name:	Neurons, donor3
Species:	Human (Homo sapiens)
Library ID:	CNhs13815
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	brain
dev stage	NA
sex	NA
age	NA
cell type	neuron
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	SC1525
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005711

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13815		CAGE		DRX008377		DRR009249

Accession ID Hg19

Library id		BAM		CTSS
CNhs13815		DRZ000674		DRZ002059

Accession ID Hg38

Library id		BAM		CTSS
CNhs13815		DRZ012024		DRZ013409

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0.357
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0445
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.158
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0445
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.127
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0484
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	1.074
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.118
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.744
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.684
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0362
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.403
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.214
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0.214
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.181
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.653
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.357
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.214
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13815

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	1.28472e-6
MA0003.1	MA0003.1	0.103
MA0004.1	MA0004.1	0.303
MA0006.1	MA0006.1	0.389
MA0007.1	MA0007.1	0.228
MA0009.1	MA0009.1	0.4
MA0014.1	MA0014.1	0.533
MA0017.1	MA0017.1	0.00171
MA0018.2	MA0018.2	0.00154
MA0019.1	MA0019.1	0.321
MA0024.1	MA0024.1	0.00216
MA0025.1	MA0025.1	0.0235
MA0027.1	MA0027.1	0.15
MA0028.1	MA0028.1	0.538
MA0029.1	MA0029.1	0.141
MA0030.1	MA0030.1	0.0248
MA0031.1	MA0031.1	0.00766
MA0035.2	MA0035.2	0.0349
MA0038.1	MA0038.1	0.0248
MA0039.2	MA0039.2	0.0425
MA0040.1	MA0040.1	0.0685
MA0041.1	MA0041.1	0.345
MA0042.1	MA0042.1	0.384
MA0043.1	MA0043.1	0.173
MA0046.1	MA0046.1	0.00614
MA0047.2	MA0047.2	8.26015e-4
MA0048.1	MA0048.1	0.724
MA0050.1	MA0050.1	2.05324e-7
MA0051.1	MA0051.1	9.49751e-4
MA0052.1	MA0052.1	0.569
MA0055.1	MA0055.1	0.485
MA0057.1	MA0057.1	0.16
MA0058.1	MA0058.1	0.192
MA0059.1	MA0059.1	0.273
MA0060.1	MA0060.1	5.03476e-4
MA0061.1	MA0061.1	0.0158
MA0062.2	MA0062.2	0.599
MA0065.2	MA0065.2	3.55671e-4
MA0066.1	MA0066.1	0.1
MA0067.1	MA0067.1	0.471
MA0068.1	MA0068.1	0.126
MA0069.1	MA0069.1	0.56
MA0070.1	MA0070.1	0.16
MA0071.1	MA0071.1	0.117
MA0072.1	MA0072.1	0.255
MA0073.1	MA0073.1	0.209
MA0074.1	MA0074.1	0.361
MA0076.1	MA0076.1	0.257
MA0077.1	MA0077.1	0.0475
MA0078.1	MA0078.1	0.166
MA0079.2	MA0079.2	0.431
MA0080.2	MA0080.2	2.22698e-10
MA0081.1	MA0081.1	0.0241
MA0083.1	MA0083.1	0.78
MA0084.1	MA0084.1	0.536
MA0087.1	MA0087.1	0.195
MA0088.1	MA0088.1	0.25
MA0090.1	MA0090.1	0.0972
MA0091.1	MA0091.1	0.707
MA0092.1	MA0092.1	0.7
MA0093.1	MA0093.1	0.323
MA0099.2	MA0099.2	5.44825e-13
MA0100.1	MA0100.1	0.659
MA0101.1	MA0101.1	0.00724
MA0102.2	MA0102.2	0.00304
MA0103.1	MA0103.1	0.0941
MA0104.2	MA0104.2	0.881
MA0105.1	MA0105.1	0.0269
MA0106.1	MA0106.1	0.0681
MA0107.1	MA0107.1	0.00515
MA0108.2	MA0108.2	0.103
MA0111.1	MA0111.1	0.919
MA0112.2	MA0112.2	1.07859e-4
MA0113.1	MA0113.1	0.0698
MA0114.1	MA0114.1	0.0122
MA0115.1	MA0115.1	0.451
MA0116.1	MA0116.1	0.0159
MA0117.1	MA0117.1	0.665
MA0119.1	MA0119.1	0.264
MA0122.1	MA0122.1	0.32
MA0124.1	MA0124.1	0.415
MA0125.1	MA0125.1	0.147
MA0131.1	MA0131.1	0.469
MA0135.1	MA0135.1	0.135
MA0136.1	MA0136.1	2.98405e-9
MA0137.2	MA0137.2	0.322
MA0138.2	MA0138.2	0.332
MA0139.1	MA0139.1	0.399
MA0140.1	MA0140.1	0.00106
MA0141.1	MA0141.1	0.0208
MA0142.1	MA0142.1	0.175
MA0143.1	MA0143.1	0.171
MA0144.1	MA0144.1	0.0482
MA0145.1	MA0145.1	0.0701
MA0146.1	MA0146.1	0.0155
MA0147.1	MA0147.1	0.753
MA0148.1	MA0148.1	0.0063
MA0149.1	MA0149.1	0.0156
MA0150.1	MA0150.1	8.14804e-5
MA0152.1	MA0152.1	0.224
MA0153.1	MA0153.1	0.13
MA0154.1	MA0154.1	0.0239
MA0155.1	MA0155.1	0.36
MA0156.1	MA0156.1	1.24363e-7
MA0157.1	MA0157.1	0.0224
MA0159.1	MA0159.1	0.00269
MA0160.1	MA0160.1	0.0109
MA0162.1	MA0162.1	0.173
MA0163.1	MA0163.1	0.00127
MA0164.1	MA0164.1	0.754
MA0258.1	MA0258.1	0.00542
MA0259.1	MA0259.1	0.897

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13815

Novel motif	Logo	P-value
1	1	0.208
10	10	0.279
100	100	0.938
101	101	0.907
102	102	0.861
103	103	0.0549
104	104	0.162
105	105	0.0566
106	106	0.0209
107	107	0.158
108	108	0.933
109	109	0.00293
11	11	0.0812
110	110	0.157
111	111	0.913
112	112	0.276
113	113	0.79
114	114	0.0625
115	115	0.203
116	116	0.944
117	117	0.0655
118	118	0.399
119	119	0.326
12	12	0.505
120	120	0.645
121	121	0.203
122	122	0.245
123	123	0.201
124	124	0.837
125	125	0.22
126	126	0.00842
127	127	0.332
128	128	0.114
129	129	0.347
13	13	0.0193
130	130	0.261
131	131	0.466
132	132	0.898
133	133	0.532
134	134	0.748
135	135	0.537
136	136	0.0364
137	137	0.265
138	138	0.48
139	139	0.0537
14	14	0.77
140	140	0.868
141	141	0.467
142	142	0.786
143	143	0.103
144	144	0.793
145	145	0.482
146	146	0.191
147	147	0.959
148	148	0.22
149	149	0.198
15	15	0.0707
150	150	0.5
151	151	0.332
152	152	0.082
153	153	0.938
154	154	0.61
155	155	0.824
156	156	0.636
157	157	0.346
158	158	0.943
159	159	0.424
16	16	0.143
160	160	0.172
161	161	0.16
162	162	0.745
163	163	0.39
164	164	0.0843
165	165	0.393
166	166	0.334
167	167	0.358
168	168	0.0989
169	169	0.014
17	17	0.106
18	18	0.198
19	19	0.23
2	2	0.267
20	20	0.94
21	21	0.41
22	22	0.0757
23	23	0.0226
24	24	0.0586
25	25	0.55
26	26	0.153
27	27	0.33
28	28	0.783
29	29	0.169
3	3	0.114
30	30	0.402
31	31	0.916
32	32	0.0594
33	33	0.238
34	34	0.279
35	35	0.557
36	36	0.302
37	37	0.0783
38	38	0.165
39	39	0.305
4	4	0.869
40	40	0.0573
41	41	0.221
42	42	0.298
43	43	0.126
44	44	0.724
45	45	0.375
46	46	0.287
47	47	0.196
48	48	0.174
49	49	0.232
5	5	0.153
50	50	0.228
51	51	0.396
52	52	0.276
53	53	0.693
54	54	0.26
55	55	0.26
56	56	0.38
57	57	0.604
58	58	0.18
59	59	0.0217
6	6	0.97
60	60	0.0566
61	61	0.0554
62	62	0.158
63	63	0.106
64	64	0.507
65	65	0.155
66	66	0.632
67	67	0.641
68	68	0.284
69	69	0.555
7	7	0.161
70	70	0.0844
71	71	0.0398
72	72	0.279
73	73	0.0562
74	74	0.968
75	75	0.0834
76	76	0.727
77	77	0.0591
78	78	0.0345
79	79	0.741
8	8	0.412
80	80	0.0952
81	81	0.758
82	82	0.303
83	83	0.116
84	84	0.946
85	85	0.104
86	86	0.3
87	87	0.0561
88	88	0.686
89	89	0.253
9	9	0.21
90	90	0.904
91	91	0.732
92	92	0.128
93	93	0.59
94	94	0.45
95	95	0.0357
96	96	0.698
97	97	0.513
98	98	0.487
99	99	0.365

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13815

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000348 human neuron samples

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000540 (neuron)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0002319 (neural cell)
0000393 (electrically responsive cell)
0000211 (electrically active cell)
0000404 (electrically signaling cell)
0000255 (eukaryotic cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000348 (human neuron samples)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000133 (neurectodermal cell)
CL:0000031 (neuroblast)
CL:0000221 (ectodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|id=FF:11655-122E8
+|DRA_sample_Accession=CAGE@SAMD00005711
-|name=Neurons, donor3
+|accession_numbers=CAGE;DRX008377;DRR009249;DRZ000674;DRZ002059;DRZ012024;DRZ013409
-|sample_id=11655
+|ancestors_in_anatomy_facet=
-|rna_tube_id=122E8
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000540,CL:0000003,CL:0000548,CL:0002371,CL:0002319,CL:0000393,CL:0000211,CL:0000404,CL:0000255
-|rna_box=122
-|rna_position=E8
-|sample_cell_lot=N/A
-|sample_cell_catalog=N/A
-|sample_company=Sciencell/3H
-|rna_lot_number=
-|rna_catalog_number=SC1525
-|sample_species=Human (Homo sapiens)
-|sample_strain=
-|sample_dev_stage=
-|sample_tissue=brain
-|sample_donor(cell lot)=
-|sample_sex=
-|sample_age=
-|sample_ethnicity=
-|rna_rin=
-|rna_od260/230=
-|rna_od260/280=
-|sample_cell_type=neuron
-|sample_cell_line=
-|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
-|sample_experimental_condition=
-|sample_disease=
-|rna_sample_type=total RNA
-|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0
-|rna_weight_ug=10
-|rna_concentration=1
-|sample_note=
-|profile_hcage=CNhs13815,LSID1092,release014,COMPLETED
-|profile_cagescan=
-|profile_srnaseq=
-|profile_rnaseq=
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000031,CL:0000034,CL:0000047,CL:0000048,CL:0000055,CL:0000133,CL:0000144,CL:0000211,CL:0000220,CL:0000221,CL:0000255,CL:0000393,CL:0000404,CL:0000540,CL:0000548,CL:0000723,CL:0002319,CL:0002321,CL:0002371
-|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000073,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000480,UBERON:0000922,UBERON:0000923,UBERON:0000924,UBERON:0001016,UBERON:0001017,UBERON:0001062,UBERON:0002050,UBERON:0002532,UBERON:0004121,UBERON:0005423,UBERON:0005743
 |ancestors_in_disease_facet=
-|sample_description=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000348
+|comment=
+|created_by=
+|creation_date=
+|data_phase=2
+|datafreeze_phase=2
+|def=
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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000540;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002319;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016
+|ffid_belonging_in_development=CL:0000133,CL:0000031,CL:0000221
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 66: / Line 41: @@
 |fonse_treatment=
 |fonse_treatment_closure=
-|top_motifs=
+|has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Neurons%252c%2520donor3.CNhs13815.11655-122E8.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Neurons%252c%2520donor3.CNhs13815.11655-122E8.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Neurons%252c%2520donor3.CNhs13815.11655-122E8.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Neurons%252c%2520donor3.CNhs13815.11655-122E8.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Neurons%252c%2520donor3.CNhs13815.11655-122E8.hg38.nobarcode.ctss.bed.gz
+|id=FF:11655-122E8
+|is_a=EFO:0002091;;FF:0000348
+|is_obsolete=
+|library_id=CNhs13815
+|library_id_phase_based=2:CNhs13815
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11655
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11655
+|name=Neurons, donor3
+|namespace=
+|part_of=
+|profile_cagescan=
+|profile_hcage=CNhs13815,LSID1092,release014,COMPLETED
+|profile_rnaseq=
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+|rna_catalog_number=SC1525
+|rna_concentration=1
+|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0
+|rna_lot_number=
+|rna_od260/230=
+|rna_od260/280=
+|rna_position=E8
+|rna_rin=
+|rna_sample_type=total RNA
+|rna_tube_id=1.22E+10
+|rna_weight_ug=10
+|sample_age=
+|sample_category=primary cells
+|sample_cell_catalog=N/A
+|sample_cell_line=
+|sample_cell_lot=N/A
+|sample_cell_type=neuron
+|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
+|sample_company=Sciencell/3H
+|sample_description=
+|sample_dev_stage=
+|sample_disease=
+|sample_donor(cell lot)=
+|sample_ethnicity=
+|sample_experimental_condition=
+|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;5.09558656572233e-251!GO:0043226;organelle;3.16523230611089e-213!GO:0043229;intracellular organelle;1.42268104107597e-212!GO:0043231;intracellular membrane-bound organelle;1.19968408657002e-210!GO:0043227;membrane-bound organelle;1.24576184176116e-210!GO:0005737;cytoplasm;1.34785276509029e-144!GO:0044422;organelle part;1.44973245979673e-133!GO:0044446;intracellular organelle part;3.96512219930702e-132!GO:0032991;macromolecular complex;6.11252969061323e-108!GO:0005634;nucleus;5.65770113293489e-107!GO:0044444;cytoplasmic part;1.59625419109398e-101!GO:0030529;ribonucleoprotein complex;2.17835358608766e-93!GO:0044237;cellular metabolic process;2.47340617389399e-84!GO:0043170;macromolecule metabolic process;2.78132821334429e-83!GO:0044238;primary metabolic process;3.54538080420978e-82!GO:0003723;RNA binding;2.36119248861335e-75!GO:0044428;nuclear part;4.63012522521278e-70!GO:0005515;protein binding;8.65209353034808e-67!GO:0043233;organelle lumen;4.26943810103318e-65!GO:0031974;membrane-enclosed lumen;4.26943810103318e-65!GO:0010467;gene expression;9.47060737660459e-64!GO:0016043;cellular component organization and biogenesis;6.35020067370269e-62!GO:0043283;biopolymer metabolic process;1.32226896126448e-61!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.32122791937449e-57!GO:0005739;mitochondrion;7.68331405882376e-56!GO:0005840;ribosome;4.12853169418111e-55!GO:0043234;protein complex;4.066641743762e-54!GO:0006396;RNA processing;1.90728568564594e-51!GO:0003735;structural constituent of ribosome;7.32877589035227e-49!GO:0006412;translation;9.73069115791379e-45!GO:0003676;nucleic acid binding;2.5827129531252e-44!GO:0031981;nuclear lumen;1.65664013092647e-42!GO:0033279;ribosomal subunit;5.08089796289799e-42!GO:0016071;mRNA metabolic process;1.37149459311982e-41!GO:0008380;RNA splicing;2.94914766223911e-41!GO:0031090;organelle membrane;4.44769612000222e-41!GO:0006996;organelle organization and biogenesis;7.9549540293766e-40!GO:0033036;macromolecule localization;2.70424578011636e-39!GO:0044429;mitochondrial part;3.14966279266861e-39!GO:0015031;protein transport;3.23212828828744e-38!GO:0006397;mRNA processing;2.07352967355345e-37!GO:0043228;non-membrane-bound organelle;5.62880273427883e-36!GO:0043232;intracellular non-membrane-bound organelle;5.62880273427883e-36!GO:0008104;protein localization;1.52458657487496e-35!GO:0016070;RNA metabolic process;2.06768804834002e-35!GO:0031967;organelle envelope;7.31705398929604e-35!GO:0031975;envelope;1.05475708262009e-34!GO:0045184;establishment of protein localization;1.49436125241309e-34!GO:0046907;intracellular transport;1.98247529882951e-32!GO:0019538;protein metabolic process;2.91582983062117e-31!GO:0065003;macromolecular complex assembly;3.76300105260301e-31!GO:0009059;macromolecule biosynthetic process;1.03475866906472e-30!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.13056962761367e-30!GO:0005829;cytosol;3.94299002409221e-30!GO:0006259;DNA metabolic process;4.8226686371163e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.71470711669642e-29!GO:0044249;cellular biosynthetic process;2.11741756492239e-29!GO:0044267;cellular protein metabolic process;7.50918331039011e-29!GO:0044260;cellular macromolecule metabolic process;1.07946824015826e-28!GO:0005681;spliceosome;1.23404453170401e-28!GO:0009058;biosynthetic process;1.57453526773194e-28!GO:0022607;cellular component assembly;9.16588478402769e-28!GO:0006886;intracellular protein transport;2.95428865198529e-25!GO:0006119;oxidative phosphorylation;5.80648843055282e-25!GO:0005740;mitochondrial envelope;5.89794411771325e-25!GO:0019866;organelle inner membrane;8.17786086869639e-25!GO:0005654;nucleoplasm;8.47369689493738e-25!GO:0051649;establishment of cellular localization;3.38914250947685e-24!GO:0031966;mitochondrial membrane;6.55916741284101e-24!GO:0051641;cellular localization;9.17382468896518e-24!GO:0044445;cytosolic part;2.12370853622708e-23!GO:0005743;mitochondrial inner membrane;2.2188745330205e-22!GO:0044455;mitochondrial membrane part;2.50783322392954e-22!GO:0015934;large ribosomal subunit;1.53722968855053e-21!GO:0015935;small ribosomal subunit;1.60253257816221e-21!GO:0044451;nucleoplasm part;7.07639915542155e-21!GO:0005746;mitochondrial respiratory chain;3.04876970458693e-19!GO:0016462;pyrophosphatase activity;5.019098185438e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;6.13049514878506e-19!GO:0017111;nucleoside-triphosphatase activity;8.56313697260691e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;1.07935488207144e-18!GO:0022618;protein-RNA complex assembly;1.73053213867264e-18!GO:0005694;chromosome;3.20215124639378e-18!GO:0051276;chromosome organization and biogenesis;4.80138322703745e-18!GO:0050136;NADH dehydrogenase (quinone) activity;4.80138322703745e-18!GO:0003954;NADH dehydrogenase activity;4.80138322703745e-18!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.80138322703745e-18!GO:0007049;cell cycle;6.81962095683711e-18!GO:0000166;nucleotide binding;8.80964239291187e-18!GO:0006325;establishment and/or maintenance of chromatin architecture;1.10979022840757e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.21413957167454e-17!GO:0005730;nucleolus;4.21504104382234e-17!GO:0006323;DNA packaging;7.27694880996664e-17!GO:0031980;mitochondrial lumen;8.18587868255607e-17!GO:0005759;mitochondrial matrix;8.18587868255607e-17!GO:0008135;translation factor activity, nucleic acid binding;2.93240381360012e-16!GO:0044427;chromosomal part;4.73537830745956e-16!GO:0030964;NADH dehydrogenase complex (quinone);6.54284590991204e-16!GO:0045271;respiratory chain complex I;6.54284590991204e-16!GO:0005747;mitochondrial respiratory chain complex I;6.54284590991204e-16!GO:0005761;mitochondrial ribosome;6.74600473251091e-16!GO:0000313;organellar ribosome;6.74600473251091e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);8.70263466359832e-16!GO:0006512;ubiquitin cycle;1.00636900970282e-15!GO:0012505;endomembrane system;1.52189982367612e-15!GO:0042775;organelle ATP synthesis coupled electron transport;1.63677081294998e-15!GO:0042773;ATP synthesis coupled electron transport;1.63677081294998e-15!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.23987925201851e-15!GO:0006457;protein folding;2.37798346079302e-15!GO:0016874;ligase activity;1.35625599268403e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.66341431217919e-14!GO:0006974;response to DNA damage stimulus;1.98254500301085e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;3.07893110882896e-14!GO:0000375;RNA splicing, via transesterification reactions;3.07893110882896e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.07893110882896e-14!GO:0065004;protein-DNA complex assembly;4.29750960027275e-14!GO:0000502;proteasome complex (sensu Eukaryota);4.48304828239344e-14!GO:0006333;chromatin assembly or disassembly;5.8562003054056e-14!GO:0008134;transcription factor binding;7.12047396823294e-14!GO:0005794;Golgi apparatus;1.85373767740073e-13!GO:0003743;translation initiation factor activity;2.48090589220289e-13!GO:0050794;regulation of cellular process;3.58030464906955e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;6.0016420133567e-13!GO:0022402;cell cycle process;7.68172920621581e-13!GO:0042254;ribosome biogenesis and assembly;1.34859184914108e-12!GO:0000785;chromatin;1.36085915630633e-12!GO:0019222;regulation of metabolic process;2.27282300940162e-12!GO:0006511;ubiquitin-dependent protein catabolic process;2.5793977486692e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;3.00624806863377e-12!GO:0019941;modification-dependent protein catabolic process;3.35515809537496e-12!GO:0043632;modification-dependent macromolecule catabolic process;3.35515809537496e-12!GO:0006605;protein targeting;3.64717254099919e-12!GO:0044265;cellular macromolecule catabolic process;4.88248232755444e-12!GO:0006281;DNA repair;5.92150741898084e-12!GO:0006413;translational initiation;6.13659983684112e-12!GO:0006334;nucleosome assembly;6.54046139689735e-12!GO:0044257;cellular protein catabolic process;6.54046139689735e-12!GO:0051082;unfolded protein binding;8.01151556601395e-12!GO:0031965;nuclear membrane;8.77563879208118e-12!GO:0032553;ribonucleotide binding;9.54849819097964e-12!GO:0032555;purine ribonucleotide binding;9.54849819097964e-12!GO:0016192;vesicle-mediated transport;1.06794031017867e-11!GO:0050789;regulation of biological process;1.63269979652638e-11!GO:0048193;Golgi vesicle transport;2.24281324690214e-11!GO:0044453;nuclear membrane part;2.44703657051342e-11!GO:0048770;pigment granule;2.46715393072288e-11!GO:0042470;melanosome;2.46715393072288e-11!GO:0015630;microtubule cytoskeleton;2.99949772208766e-11!GO:0043285;biopolymer catabolic process;3.70137550953341e-11!GO:0000278;mitotic cell cycle;3.79628027856971e-11!GO:0031497;chromatin assembly;4.04017133369659e-11!GO:0051186;cofactor metabolic process;5.3691309103115e-11!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.0919073747308e-10!GO:0005635;nuclear envelope;1.40634131878945e-10!GO:0008565;protein transporter activity;2.38961559303927e-10!GO:0006350;transcription;2.69487194231687e-10!GO:0030163;protein catabolic process;3.47033632770704e-10!GO:0017076;purine nucleotide binding;3.93218599196643e-10!GO:0006260;DNA replication;4.22781541640963e-10!GO:0005643;nuclear pore;5.80711842508001e-10!GO:0042623;ATPase activity, coupled;8.38276360114418e-10!GO:0009057;macromolecule catabolic process;9.2661732703196e-10!GO:0043412;biopolymer modification;9.63636428611389e-10!GO:0016887;ATPase activity;1.1015464874844e-09!GO:0006446;regulation of translational initiation;1.24107131651716e-09!GO:0006913;nucleocytoplasmic transport;1.36115934808987e-09!GO:0016604;nuclear body;1.85481236551859e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.92662216360072e-09!GO:0031323;regulation of cellular metabolic process;2.47706352770821e-09!GO:0006732;coenzyme metabolic process;3.12370195273018e-09!GO:0051169;nuclear transport;3.53631898896641e-09!GO:0006366;transcription from RNA polymerase II promoter;3.92530258808788e-09!GO:0019829;cation-transporting ATPase activity;6.4393160655797e-09!GO:0009719;response to endogenous stimulus;6.51749965368893e-09!GO:0009259;ribonucleotide metabolic process;7.65004508562034e-09!GO:0006403;RNA localization;8.01598789136754e-09!GO:0032774;RNA biosynthetic process;9.44766968056627e-09!GO:0015986;ATP synthesis coupled proton transport;1.01856364000545e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.01856364000545e-08!GO:0006351;transcription, DNA-dependent;1.13364780260797e-08!GO:0050657;nucleic acid transport;1.24315529676557e-08!GO:0051236;establishment of RNA localization;1.24315529676557e-08!GO:0050658;RNA transport;1.24315529676557e-08!GO:0016607;nuclear speck;1.25228237687448e-08!GO:0008639;small protein conjugating enzyme activity;1.36789008143053e-08!GO:0030532;small nuclear ribonucleoprotein complex;1.40129779089826e-08!GO:0005524;ATP binding;1.43726428498143e-08!GO:0006464;protein modification process;1.48690083831645e-08!GO:0006364;rRNA processing;1.62449647245423e-08!GO:0006163;purine nucleotide metabolic process;1.63791461966157e-08!GO:0000087;M phase of mitotic cell cycle;1.74838082520131e-08!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.28925045532223e-08!GO:0010468;regulation of gene expression;2.28925045532223e-08!GO:0032559;adenyl ribonucleotide binding;2.29912684228423e-08!GO:0004842;ubiquitin-protein ligase activity;2.3184561364218e-08!GO:0009199;ribonucleoside triphosphate metabolic process;2.57167739386319e-08!GO:0007067;mitosis;2.57167739386319e-08!GO:0009150;purine ribonucleotide metabolic process;3.32372482479878e-08!GO:0016072;rRNA metabolic process;3.38679218417735e-08!GO:0009141;nucleoside triphosphate metabolic process;3.55740203463253e-08!GO:0005783;endoplasmic reticulum;3.8217386822097e-08!GO:0004386;helicase activity;3.8687590436365e-08!GO:0003712;transcription cofactor activity;4.35605945391923e-08!GO:0009142;nucleoside triphosphate biosynthetic process;4.56481448475891e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.56481448475891e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.68563308187023e-08!GO:0009144;purine nucleoside triphosphate metabolic process;4.68563308187023e-08!GO:0051301;cell division;4.75168924757554e-08!GO:0019787;small conjugating protein ligase activity;5.04966287596054e-08!GO:0051726;regulation of cell cycle;5.21453614725009e-08!GO:0006164;purine nucleotide biosynthetic process;6.06809405748956e-08!GO:0009055;electron carrier activity;6.15013412356957e-08!GO:0000074;regulation of progression through cell cycle;6.88477814937197e-08!GO:0009260;ribonucleotide biosynthetic process;7.17808808665921e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;8.58917972479135e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;8.58917972479135e-08!GO:0044248;cellular catabolic process;8.61497242346766e-08!GO:0022403;cell cycle phase;9.20496345387379e-08!GO:0009060;aerobic respiration;9.52043542895947e-08!GO:0043687;post-translational protein modification;1.02141782702956e-07!GO:0009152;purine ribonucleotide biosynthetic process;1.18669731268136e-07!GO:0008026;ATP-dependent helicase activity;1.20300934579199e-07!GO:0003924;GTPase activity;1.2309638482326e-07!GO:0006399;tRNA metabolic process;1.35571141539532e-07!GO:0046034;ATP metabolic process;1.4114420515304e-07!GO:0006754;ATP biosynthetic process;1.94757016881254e-07!GO:0006753;nucleoside phosphate metabolic process;1.94757016881254e-07!GO:0016568;chromatin modification;2.17949546568461e-07!GO:0065002;intracellular protein transport across a membrane;2.19941981124025e-07!GO:0015631;tubulin binding;2.4113194944013e-07!GO:0044432;endoplasmic reticulum part;2.45099903043869e-07!GO:0017038;protein import;2.9034562004991e-07!GO:0045333;cellular respiration;3.06453760659361e-07!GO:0046930;pore complex;3.16742821558855e-07!GO:0045449;regulation of transcription;3.38165487497986e-07!GO:0051028;mRNA transport;3.98240458118972e-07!GO:0016469;proton-transporting two-sector ATPase complex;4.85861240650142e-07!GO:0048523;negative regulation of cellular process;5.30196350536422e-07!GO:0044431;Golgi apparatus part;6.0815614899032e-07!GO:0005874;microtubule;6.93794634425943e-07!GO:0003677;DNA binding;7.25395821711288e-07!GO:0030554;adenyl nucleotide binding;7.28020186414597e-07!GO:0000786;nucleosome;7.80339030627586e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;9.25104953190986e-07!GO:0007010;cytoskeleton organization and biogenesis;9.61165328350142e-07!GO:0045259;proton-transporting ATP synthase complex;1.0488854098059e-06!GO:0000245;spliceosome assembly;1.08395523458533e-06!GO:0006355;regulation of transcription, DNA-dependent;1.08634285800516e-06!GO:0016881;acid-amino acid ligase activity;1.17447438108994e-06!GO:0032446;protein modification by small protein conjugation;1.53829018022451e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.63145090850988e-06!GO:0031988;membrane-bound vesicle;1.73765793560529e-06!GO:0015078;hydrogen ion transmembrane transporter activity;1.77210732826154e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.84307136587027e-06!GO:0004812;aminoacyl-tRNA ligase activity;1.84307136587027e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.84307136587027e-06!GO:0005762;mitochondrial large ribosomal subunit;2.08863658713938e-06!GO:0000315;organellar large ribosomal subunit;2.08863658713938e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.21478176293568e-06!GO:0005667;transcription factor complex;2.94525604607592e-06!GO:0016023;cytoplasmic membrane-bound vesicle;2.97549757043782e-06!GO:0051188;cofactor biosynthetic process;3.00177232742312e-06!GO:0043566;structure-specific DNA binding;3.34984718531369e-06!GO:0016567;protein ubiquitination;3.85969159905732e-06!GO:0065007;biological regulation;4.33700976458768e-06!GO:0007017;microtubule-based process;4.45881253081271e-06!GO:0000279;M phase;4.84318230753143e-06!GO:0006099;tricarboxylic acid cycle;4.9389445878071e-06!GO:0046356;acetyl-CoA catabolic process;4.9389445878071e-06!GO:0005793;ER-Golgi intermediate compartment;5.16647378657056e-06!GO:0006752;group transfer coenzyme metabolic process;5.74876616889228e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;6.10147077243229e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;6.38281337451486e-06!GO:0043038;amino acid activation;6.60690726754763e-06!GO:0006418;tRNA aminoacylation for protein translation;6.60690726754763e-06!GO:0043039;tRNA aminoacylation;6.60690726754763e-06!GO:0003697;single-stranded DNA binding;6.84547877692813e-06!GO:0007005;mitochondrion organization and biogenesis;7.28632801072815e-06!GO:0006888;ER to Golgi vesicle-mediated transport;7.88394834467402e-06!GO:0005525;GTP binding;9.45962402133159e-06!GO:0005839;proteasome core complex (sensu Eukaryota);9.67715452463756e-06!GO:0048519;negative regulation of biological process;1.0124236612189e-05!GO:0031982;vesicle;1.02527509123237e-05!GO:0016363;nuclear matrix;1.09805309116677e-05!GO:0003729;mRNA binding;1.17005640316589e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.27250314091792e-05!GO:0016564;transcription repressor activity;1.28021406921773e-05!GO:0006461;protein complex assembly;1.38359372513729e-05!GO:0006084;acetyl-CoA metabolic process;1.46797972092937e-05!GO:0043623;cellular protein complex assembly;1.54141833686863e-05!GO:0048475;coated membrane;1.58713423728875e-05!GO:0030117;membrane coat;1.58713423728875e-05!GO:0031410;cytoplasmic vesicle;1.77103481097232e-05!GO:0005768;endosome;1.82658711313082e-05!GO:0009108;coenzyme biosynthetic process;1.90233539994198e-05!GO:0005789;endoplasmic reticulum membrane;1.93267264431396e-05!GO:0000902;cell morphogenesis;2.78671003546387e-05!GO:0032989;cellular structure morphogenesis;2.78671003546387e-05!GO:0006793;phosphorus metabolic process;2.95499494645129e-05!GO:0006796;phosphate metabolic process;2.95499494645129e-05!GO:0000139;Golgi membrane;2.97152125832676e-05!GO:0006613;cotranslational protein targeting to membrane;3.44643563683469e-05!GO:0008017;microtubule binding;3.58218139012528e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.8386473917467e-05!GO:0051427;hormone receptor binding;4.21703747647096e-05!GO:0009109;coenzyme catabolic process;4.29280860112322e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;5.18701730891408e-05!GO:0000314;organellar small ribosomal subunit;5.18916376893749e-05!GO:0005763;mitochondrial small ribosomal subunit;5.18916376893749e-05!GO:0003724;RNA helicase activity;5.20490615712295e-05!GO:0030120;vesicle coat;5.25481025262677e-05!GO:0030662;coated vesicle membrane;5.25481025262677e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;6.1321016754116e-05!GO:0004298;threonine endopeptidase activity;6.32961399463384e-05!GO:0051187;cofactor catabolic process;7.19933609423427e-05!GO:0006261;DNA-dependent DNA replication;7.28872356244409e-05!GO:0003899;DNA-directed RNA polymerase activity;7.46946738276555e-05!GO:0000226;microtubule cytoskeleton organization and biogenesis;7.56495861721881e-05!GO:0045045;secretory pathway;7.75145003645973e-05!GO:0031324;negative regulation of cellular metabolic process;8.71093549043037e-05!GO:0035257;nuclear hormone receptor binding;8.71238563245072e-05!GO:0003714;transcription corepressor activity;8.97190061777368e-05!GO:0019843;rRNA binding;8.98885806182315e-05!GO:0009892;negative regulation of metabolic process;8.98985127903635e-05!GO:0016310;phosphorylation;9.23146358046061e-05!GO:0032561;guanyl ribonucleotide binding;9.68538669754956e-05!GO:0019001;guanyl nucleotide binding;9.68538669754956e-05!GO:0045786;negative regulation of progression through cell cycle;0.000104252464191324!GO:0051170;nuclear import;0.000109225066037993!GO:0005905;coated pit;0.000114557506500969!GO:0031252;leading edge;0.000114557506500969!GO:0051246;regulation of protein metabolic process;0.000123680626584065!GO:0006606;protein import into nucleus;0.000124935987494868!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000127128979536285!GO:0043069;negative regulation of programmed cell death;0.000132786508492162!GO:0005813;centrosome;0.000143896429573805!GO:0006414;translational elongation;0.000153878552041308!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000160159493887182!GO:0008092;cytoskeletal protein binding;0.000162296474351294!GO:0043066;negative regulation of apoptosis;0.000165697639422916!GO:0051168;nuclear export;0.000173143454052254!GO:0006916;anti-apoptosis;0.000182853066997401!GO:0008361;regulation of cell size;0.000187098728039865!GO:0016049;cell growth;0.000205942046224959!GO:0005815;microtubule organizing center;0.000229516441588895!GO:0048471;perinuclear region of cytoplasm;0.000246865511250579!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000268611100764945!GO:0012501;programmed cell death;0.000314115359641497!GO:0043021;ribonucleoprotein binding;0.000316354771794163!GO:0008270;zinc ion binding;0.000316354771794163!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000338330584430504!GO:0005657;replication fork;0.000350693837128869!GO:0031124;mRNA 3'-end processing;0.000351680732905881!GO:0006915;apoptosis;0.000378438032032728!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000415296270336005!GO:0016126;sterol biosynthetic process;0.000419115204395861!GO:0003682;chromatin binding;0.000448225275868475!GO:0016481;negative regulation of transcription;0.000452563383946776!GO:0003713;transcription coactivator activity;0.000493411947362314!GO:0044452;nucleolar part;0.000538827184026291!GO:0005875;microtubule associated complex;0.000542398762481697!GO:0005770;late endosome;0.000542398762481697!GO:0005819;spindle;0.000548085600932769!GO:0000775;chromosome, pericentric region;0.000564126823301734!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000579085297900157!GO:0009117;nucleotide metabolic process;0.000580080751722315!GO:0000151;ubiquitin ligase complex;0.000598248970418802!GO:0016779;nucleotidyltransferase activity;0.000642860973154258!GO:0004576;oligosaccharyl transferase activity;0.000744905694358389!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00075775116319025!GO:0015399;primary active transmembrane transporter activity;0.00075775116319025!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000814899682023039!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000814899682023039!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000814899682023039!GO:0044440;endosomal part;0.000829759274760255!GO:0010008;endosome membrane;0.000829759274760255!GO:0008186;RNA-dependent ATPase activity;0.00085561045232174!GO:0043681;protein import into mitochondrion;0.000859653375388395!GO:0008250;oligosaccharyl transferase complex;0.000872128391321453!GO:0051920;peroxiredoxin activity;0.000875341213507048!GO:0009056;catabolic process;0.000977162483256788!GO:0008219;cell death;0.000985712934411013!GO:0016265;death;0.000985712934411013!GO:0051128;regulation of cellular component organization and biogenesis;0.0011653414711216!GO:0005798;Golgi-associated vesicle;0.00119324141530736!GO:0001558;regulation of cell growth;0.00120106758238315!GO:0008654;phospholipid biosynthetic process;0.00122405670438011!GO:0051329;interphase of mitotic cell cycle;0.00138610535867071!GO:0003690;double-stranded DNA binding;0.00138670742923775!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00143522832321537!GO:0006695;cholesterol biosynthetic process;0.0014807099143741!GO:0006352;transcription initiation;0.00168592987220121!GO:0003684;damaged DNA binding;0.00199942083941116!GO:0050767;regulation of neurogenesis;0.00203117782787928!GO:0007399;nervous system development;0.00207482476642918!GO:0000059;protein import into nucleus, docking;0.00214726858033819!GO:0000776;kinetochore;0.00214726858033819!GO:0005769;early endosome;0.00216000219536813!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00232015169316192!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00232015169316192!GO:0031123;RNA 3'-end processing;0.00234747552532351!GO:0004004;ATP-dependent RNA helicase activity;0.00242179872748168!GO:0048500;signal recognition particle;0.00242179872748168!GO:0005637;nuclear inner membrane;0.00244267202952772!GO:0006612;protein targeting to membrane;0.00248364427358234!GO:0006626;protein targeting to mitochondrion;0.00257742232150258!GO:0008139;nuclear localization sequence binding;0.00260581889639267!GO:0051087;chaperone binding;0.00260581889639267!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00268604857340885!GO:0016853;isomerase activity;0.00268910384476868!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00279194610119539!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00282857104836187!GO:0006383;transcription from RNA polymerase III promoter;0.00295027245131069!GO:0051325;interphase;0.00301920665450644!GO:0005048;signal sequence binding;0.00302770115866935!GO:0006891;intra-Golgi vesicle-mediated transport;0.00308516157438095!GO:0005885;Arp2/3 protein complex;0.00320519745369401!GO:0006818;hydrogen transport;0.00331457604527761!GO:0005869;dynactin complex;0.00332382452511244!GO:0045454;cell redox homeostasis;0.00336443557001587!GO:0016044;membrane organization and biogenesis;0.003392693337267!GO:0031072;heat shock protein binding;0.00340700484280876!GO:0008287;protein serine/threonine phosphatase complex;0.00349604737477914!GO:0006595;polyamine metabolic process;0.00356977063663227!GO:0048468;cell development;0.00357356626722657!GO:0015992;proton transport;0.00366064028081412!GO:0048487;beta-tubulin binding;0.00368037236023758!GO:0030027;lamellipodium;0.00378444531367767!GO:0006378;mRNA polyadenylation;0.00391439261515046!GO:0007051;spindle organization and biogenesis;0.00393990824355909!GO:0016272;prefoldin complex;0.00402198586467158!GO:0016251;general RNA polymerase II transcription factor activity;0.00412655167583398!GO:0007006;mitochondrial membrane organization and biogenesis;0.00431152804606762!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00440107008608714!GO:0003746;translation elongation factor activity;0.00464035981446303!GO:0051789;response to protein stimulus;0.00470369046461259!GO:0006986;response to unfolded protein;0.00470369046461259!GO:0018196;peptidyl-asparagine modification;0.00475180195746279!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00475180195746279!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00507027142841004!GO:0030118;clathrin coat;0.00519302635482717!GO:0005684;U2-dependent spliceosome;0.00527737222870608!GO:0033116;ER-Golgi intermediate compartment membrane;0.00536532658886163!GO:0008312;7S RNA binding;0.00542347378185005!GO:0016563;transcription activator activity;0.00557137182944913!GO:0008180;signalosome;0.00559287870183749!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00575660157057836!GO:0019899;enzyme binding;0.00580197751446823!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00582859848779672!GO:0045047;protein targeting to ER;0.00582859848779672!GO:0006402;mRNA catabolic process;0.0060440439095165!GO:0006839;mitochondrial transport;0.00606922249186244!GO:0006302;double-strand break repair;0.00615781620174647!GO:0016197;endosome transport;0.00663109499446328!GO:0030182;neuron differentiation;0.00666062633917346!GO:0016859;cis-trans isomerase activity;0.00667621409567994!GO:0005788;endoplasmic reticulum lumen;0.00669804236453994!GO:0016740;transferase activity;0.00697891433637548!GO:0030036;actin cytoskeleton organization and biogenesis;0.00702875484214489!GO:0032940;secretion by cell;0.00706010061271773!GO:0019887;protein kinase regulator activity;0.00720720810307052!GO:0006405;RNA export from nucleus;0.00720720810307052!GO:0008033;tRNA processing;0.00744219906300725!GO:0015980;energy derivation by oxidation of organic compounds;0.00746330622141071!GO:0045892;negative regulation of transcription, DNA-dependent;0.00779857836593061!GO:0030880;RNA polymerase complex;0.00806960564173401!GO:0008094;DNA-dependent ATPase activity;0.00836599216771714!GO:0022008;neurogenesis;0.00843055798461137!GO:0016584;nucleosome positioning;0.00863558185967012!GO:0005741;mitochondrial outer membrane;0.00885142671907907!GO:0030427;site of polarized growth;0.00920317925950664!GO:0046914;transition metal ion binding;0.00935355180611767!GO:0030176;integral to endoplasmic reticulum membrane;0.00939864065787379!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00969291139638416!GO:0008320;protein transmembrane transporter activity;0.00990894510737069!GO:0030867;rough endoplasmic reticulum membrane;0.00993535624859925!GO:0048699;generation of neurons;0.0100463949760697!GO:0030521;androgen receptor signaling pathway;0.0102588948030998!GO:0031968;organelle outer membrane;0.0107035331966009!GO:0051252;regulation of RNA metabolic process;0.0110080165653488!GO:0043492;ATPase activity, coupled to movement of substances;0.0111483059682144!GO:0006338;chromatin remodeling;0.0111742581397526!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0113287160768558!GO:0009165;nucleotide biosynthetic process;0.011415225975538!GO:0005832;chaperonin-containing T-complex;0.0115683529879727!GO:0007021;tubulin folding;0.0115943587711759!GO:0000339;RNA cap binding;0.0117497152975188!GO:0031901;early endosome membrane;0.0119332034424563!GO:0051539;4 iron, 4 sulfur cluster binding;0.0120042482729006!GO:0000159;protein phosphatase type 2A complex;0.0121486803186294!GO:0040008;regulation of growth;0.0123113456066504!GO:0019207;kinase regulator activity;0.0124851809272852!GO:0003711;transcription elongation regulator activity;0.0125836798886534!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0126781204553465!GO:0015002;heme-copper terminal oxidase activity;0.0126781204553465!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0126781204553465!GO:0004129;cytochrome-c oxidase activity;0.0126781204553465!GO:0000049;tRNA binding;0.0128550563759414!GO:0043624;cellular protein complex disassembly;0.0129257283318477!GO:0030426;growth cone;0.013049360618724!GO:0046474;glycerophospholipid biosynthetic process;0.0131645600587091!GO:0005876;spindle microtubule;0.0132090306016532!GO:0040029;regulation of gene expression, epigenetic;0.0133196912374452!GO:0043488;regulation of mRNA stability;0.0133239582768031!GO:0043487;regulation of RNA stability;0.0133239582768031!GO:0042585;germinal vesicle;0.013343373471135!GO:0019867;outer membrane;0.0134136584020825!GO:0030137;COPI-coated vesicle;0.0137246502034882!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0144533639634747!GO:0001726;ruffle;0.0145845660988118!GO:0051052;regulation of DNA metabolic process;0.0157672944349057!GO:0009116;nucleoside metabolic process;0.0162150688805987!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0163347198509073!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0168083154991216!GO:0000428;DNA-directed RNA polymerase complex;0.0168083154991216!GO:0006650;glycerophospholipid metabolic process;0.0168785585001875!GO:0016585;chromatin remodeling complex;0.0174222624659174!GO:0008022;protein C-terminus binding;0.0174777717630253!GO:0000082;G1/S transition of mitotic cell cycle;0.0184323346113176!GO:0007052;mitotic spindle organization and biogenesis;0.0184582655297315!GO:0000792;heterochromatin;0.0185630223919175!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0187792962863679!GO:0006401;RNA catabolic process;0.0190746605399859!GO:0050770;regulation of axonogenesis;0.0193005392942!GO:0007264;small GTPase mediated signal transduction;0.0193634437799011!GO:0006611;protein export from nucleus;0.019383618798819!GO:0007019;microtubule depolymerization;0.0196802616699385!GO:0035258;steroid hormone receptor binding;0.0197901379610269!GO:0042981;regulation of apoptosis;0.0198122691074715!GO:0043022;ribosome binding;0.0199706601086465!GO:0030384;phosphoinositide metabolic process;0.0202628146037471!GO:0032508;DNA duplex unwinding;0.0212980298140301!GO:0032392;DNA geometric change;0.0212980298140301!GO:0051540;metal cluster binding;0.0218804893611256!GO:0051536;iron-sulfur cluster binding;0.0218804893611256!GO:0006607;NLS-bearing substrate import into nucleus;0.0219464933938343!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.0220612145151653!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0221319006918258!GO:0043067;regulation of programmed cell death;0.0221319006918258!GO:0030663;COPI coated vesicle membrane;0.0224357827664179!GO:0030126;COPI vesicle coat;0.0224357827664179!GO:0032984;macromolecular complex disassembly;0.0227632484531644!GO:0046467;membrane lipid biosynthetic process;0.0228088046306683!GO:0006376;mRNA splice site selection;0.0228088046306683!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0228088046306683!GO:0000209;protein polyubiquitination;0.0228844759177519!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0228844759177519!GO:0055083;monovalent inorganic anion homeostasis;0.0228844759177519!GO:0055064;chloride ion homeostasis;0.0228844759177519!GO:0030644;cellular chloride ion homeostasis;0.0228844759177519!GO:0008601;protein phosphatase type 2A regulator activity;0.0229419422745272!GO:0022884;macromolecule transmembrane transporter activity;0.0229597282135782!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0229597282135782!GO:0022890;inorganic cation transmembrane transporter activity;0.0239685574082095!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0242167225351115!GO:0003678;DNA helicase activity;0.025316127705295!GO:0031902;late endosome membrane;0.0258179573868044!GO:0031371;ubiquitin conjugating enzyme complex;0.0258951423350815!GO:0030133;transport vesicle;0.0261962633634226!GO:0004448;isocitrate dehydrogenase activity;0.0269189737590403!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0282592110653953!GO:0010257;NADH dehydrogenase complex assembly;0.0282592110653953!GO:0033108;mitochondrial respiratory chain complex assembly;0.0282592110653953!GO:0043631;RNA polyadenylation;0.0287211456267601!GO:0000096;sulfur amino acid metabolic process;0.0288535848087076!GO:0000904;cellular morphogenesis during differentiation;0.029049106317943!GO:0030658;transport vesicle membrane;0.0294438052572222!GO:0000118;histone deacetylase complex;0.0307377032388657!GO:0000075;cell cycle checkpoint;0.0317504801247029!GO:0031529;ruffle organization and biogenesis;0.0322157434153657!GO:0046489;phosphoinositide biosynthetic process;0.0323975426587893!GO:0031109;microtubule polymerization or depolymerization;0.0328029174118367!GO:0007050;cell cycle arrest;0.0328029174118367!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0328501380848212!GO:0006360;transcription from RNA polymerase I promoter;0.0331938442780283!GO:0005758;mitochondrial intermembrane space;0.0335708107503216!GO:0005652;nuclear lamina;0.0337432431879911!GO:0030496;midbody;0.0339577273841826!GO:0043241;protein complex disassembly;0.0347613365725999!GO:0030029;actin filament-based process;0.0352395998272352!GO:0005669;transcription factor TFIID complex;0.0352395998272352!GO:0046128;purine ribonucleoside metabolic process;0.0355634927570897!GO:0042278;purine nucleoside metabolic process;0.0355634927570897!GO:0043284;biopolymer biosynthetic process;0.0357326480094766!GO:0012506;vesicle membrane;0.0358368001652172!GO:0032259;methylation;0.0362202429314997!GO:0044433;cytoplasmic vesicle part;0.0363272880467077!GO:0008286;insulin receptor signaling pathway;0.0366142234836427!GO:0003702;RNA polymerase II transcription factor activity;0.0374835909155255!GO:0003730;mRNA 3'-UTR binding;0.0382911295429115!GO:0005791;rough endoplasmic reticulum;0.0385893844241518!GO:0031970;organelle envelope lumen;0.0388986829587738!GO:0005521;lamin binding;0.0391336999907384!GO:0050769;positive regulation of neurogenesis;0.0396485487396908!GO:0051129;negative regulation of cellular component organization and biogenesis;0.0397999495159484!GO:0005784;translocon complex;0.0399230065638956!GO:0005881;cytoplasmic microtubule;0.0403161849916535!GO:0030132;clathrin coat of coated pit;0.0403161849916535!GO:0019208;phosphatase regulator activity;0.0404050142542766!GO:0030508;thiol-disulfide exchange intermediate activity;0.0406532794257701!GO:0004860;protein kinase inhibitor activity;0.0415128001415134!GO:0006268;DNA unwinding during replication;0.0416153447733399!GO:0030911;TPR domain binding;0.041862850153166!GO:0031301;integral to organelle membrane;0.0420314496586602!GO:0048667;neuron morphogenesis during differentiation;0.0424642012907774!GO:0048812;neurite morphogenesis;0.0424642012907774!GO:0006310;DNA recombination;0.0429066127552223!GO:0030660;Golgi-associated vesicle membrane;0.0432143249641984!GO:0006284;base-excision repair;0.0433433109569243!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0435238823357564!GO:0043414;biopolymer methylation;0.0435238823357564!GO:0016741;transferase activity, transferring one-carbon groups;0.0437267514953913!GO:0050811;GABA receptor binding;0.0455322152767152!GO:0006367;transcription initiation from RNA polymerase II promoter;0.045663846101847!GO:0050178;phenylpyruvate tautomerase activity;0.0457137863652319!GO:0008154;actin polymerization and/or depolymerization;0.0459229516355626!GO:0045893;positive regulation of transcription, DNA-dependent;0.0465946541075728!GO:0050772;positive regulation of axonogenesis;0.0471517865814935!GO:0030518;steroid hormone receptor signaling pathway;0.0474823423595094!GO:0030516;regulation of axon extension;0.0486365750394152!GO:0030030;cell projection organization and biogenesis;0.0487631707268929!GO:0048858;cell projection morphogenesis;0.0487631707268929!GO:0032990;cell part morphogenesis;0.0487631707268929
+|sample_id=11655
+|sample_note=
+|sample_sex=
+|sample_species=Human (Homo sapiens)
+|sample_strain=
+|sample_tissue=brain
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+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11655-122E8;search_select_hide=table117:FF:11655-122E8
 }}

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FF:11655-122E8: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:13, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0