FF:10057-101H3: Difference between revisions

Latest revision as of 12:18, 3 June 2020

Name:	umbilical cord, fetal, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs11765
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	umbilical cord
dev stage	31 weeks fetus
sex	male
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Biochain
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	B110269
catalog number	Cat:RtHFN: Umbilical cor
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004990

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11765		CAGE		DRX008755		DRR009627

Accession ID Hg19

Library id		BAM		CTSS
CNhs11765		DRZ001052		DRZ002437

Accession ID Hg38

Library id		BAM		CTSS
CNhs11765		DRZ012402		DRZ013787

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.445
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.137
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	1.105
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.047
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.446
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.525
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0.525
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.0669
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0.525
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.445
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.755
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.153
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0556
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0766
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.113
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.525
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.525
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	1.296
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0.755
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0.525
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	1.178
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.448
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11765

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0679
MA0003.1	MA0003.1	0.0389
MA0004.1	MA0004.1	0.0225
MA0006.1	MA0006.1	0.211
MA0007.1	MA0007.1	0.321
MA0009.1	MA0009.1	0.185
MA0014.1	MA0014.1	0.705
MA0017.1	MA0017.1	0.419
MA0018.2	MA0018.2	0.0563
MA0019.1	MA0019.1	0.657
MA0024.1	MA0024.1	0.0294
MA0025.1	MA0025.1	0.0496
MA0027.1	MA0027.1	0.426
MA0028.1	MA0028.1	1.26767e-10
MA0029.1	MA0029.1	0.575
MA0030.1	MA0030.1	0.895
MA0031.1	MA0031.1	0.747
MA0035.2	MA0035.2	0.435
MA0038.1	MA0038.1	0.634
MA0039.2	MA0039.2	0.233
MA0040.1	MA0040.1	0.981
MA0041.1	MA0041.1	0.588
MA0042.1	MA0042.1	0.319
MA0043.1	MA0043.1	0.00336
MA0046.1	MA0046.1	0.628
MA0047.2	MA0047.2	0.297
MA0048.1	MA0048.1	0.0531
MA0050.1	MA0050.1	0.0019
MA0051.1	MA0051.1	9.59935e-4
MA0052.1	MA0052.1	8.2051e-11
MA0055.1	MA0055.1	0.0429
MA0057.1	MA0057.1	0.418
MA0058.1	MA0058.1	4.69515e-4
MA0059.1	MA0059.1	0.0351
MA0060.1	MA0060.1	4.52904e-4
MA0061.1	MA0061.1	0.0683
MA0062.2	MA0062.2	5.61428e-21
MA0065.2	MA0065.2	0.289
MA0066.1	MA0066.1	0.523
MA0067.1	MA0067.1	0.0732
MA0068.1	MA0068.1	0.785
MA0069.1	MA0069.1	0.0971
MA0070.1	MA0070.1	0.526
MA0071.1	MA0071.1	0.146
MA0072.1	MA0072.1	0.716
MA0073.1	MA0073.1	0.426
MA0074.1	MA0074.1	0.589
MA0076.1	MA0076.1	1.85537e-14
MA0077.1	MA0077.1	0.926
MA0078.1	MA0078.1	0.74
MA0079.2	MA0079.2	0.381
MA0080.2	MA0080.2	7.14818e-7
MA0081.1	MA0081.1	2.9546e-4
MA0083.1	MA0083.1	8.37088e-10
MA0084.1	MA0084.1	0.0558
MA0087.1	MA0087.1	0.536
MA0088.1	MA0088.1	0.0418
MA0090.1	MA0090.1	2.17177e-4
MA0091.1	MA0091.1	0.00129
MA0092.1	MA0092.1	0.0886
MA0093.1	MA0093.1	0.00577
MA0099.2	MA0099.2	5.47245e-8
MA0100.1	MA0100.1	0.154
MA0101.1	MA0101.1	0.0141
MA0102.2	MA0102.2	0.173
MA0103.1	MA0103.1	0.202
MA0104.2	MA0104.2	9.57607e-4
MA0105.1	MA0105.1	0.568
MA0106.1	MA0106.1	0.885
MA0107.1	MA0107.1	0.0132
MA0108.2	MA0108.2	3.29143e-34
MA0111.1	MA0111.1	0.328
MA0112.2	MA0112.2	1.42648e-4
MA0113.1	MA0113.1	0.00237
MA0114.1	MA0114.1	0.765
MA0115.1	MA0115.1	0.129
MA0116.1	MA0116.1	0.76
MA0117.1	MA0117.1	0.38
MA0119.1	MA0119.1	0.116
MA0122.1	MA0122.1	0.189
MA0124.1	MA0124.1	0.58
MA0125.1	MA0125.1	0.413
MA0131.1	MA0131.1	0.181
MA0135.1	MA0135.1	0.908
MA0136.1	MA0136.1	2.37799e-16
MA0137.2	MA0137.2	0.527
MA0138.2	MA0138.2	0.0075
MA0139.1	MA0139.1	0.49
MA0140.1	MA0140.1	0.999
MA0141.1	MA0141.1	0.124
MA0142.1	MA0142.1	0.0349
MA0143.1	MA0143.1	0.471
MA0144.1	MA0144.1	0.563
MA0145.1	MA0145.1	0.0348
MA0146.1	MA0146.1	0.616
MA0147.1	MA0147.1	0.0038
MA0148.1	MA0148.1	0.0537
MA0149.1	MA0149.1	0.148
MA0150.1	MA0150.1	0.00332
MA0152.1	MA0152.1	0.0732
MA0153.1	MA0153.1	0.348
MA0154.1	MA0154.1	0.136
MA0155.1	MA0155.1	0.0385
MA0156.1	MA0156.1	4.5628e-16
MA0157.1	MA0157.1	0.37
MA0159.1	MA0159.1	0.662
MA0160.1	MA0160.1	0.591
MA0162.1	MA0162.1	0.0853
MA0163.1	MA0163.1	0.65
MA0164.1	MA0164.1	0.983
MA0258.1	MA0258.1	0.00183
MA0259.1	MA0259.1	0.127

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11765

Novel motif	Logo	P-value
1	1	0.892
10	10	0.312
100	100	0.842
101	101	0.876
102	102	0.77
103	103	0.879
104	104	0.787
105	105	0.836
106	106	0.0272
107	107	0.00283
108	108	0.134
109	109	0.618
11	11	0.714
110	110	0.606
111	111	0.861
112	112	0.49
113	113	1.57509e-4
114	114	0.544
115	115	0.411
116	116	0.257
117	117	0.0537
118	118	0.494
119	119	0.151
12	12	0.13
120	120	0.562
121	121	0.655
122	122	0.0648
123	123	0.207
124	124	0.742
125	125	0.921
126	126	0.423
127	127	0.882
128	128	0.0752
129	129	0.487
13	13	0.539
130	130	0.907
131	131	0.211
132	132	0.069
133	133	0.545
134	134	0.613
135	135	0.194
136	136	0.262
137	137	0.362
138	138	0.632
139	139	0.139
14	14	0.974
140	140	0.531
141	141	0.687
142	142	0.428
143	143	0.501
144	144	0.217
145	145	0.789
146	146	0.679
147	147	0.0388
148	148	0.589
149	149	0.0251
15	15	0.372
150	150	0.825
151	151	0.104
152	152	0.329
153	153	0.425
154	154	0.67
155	155	0.652
156	156	0.899
157	157	0.399
158	158	0.65
159	159	0.501
16	16	0.165
160	160	0.0498
161	161	0.53
162	162	0.143
163	163	0.678
164	164	0.82
165	165	0.307
166	166	0.0805
167	167	0.108
168	168	0.0832
169	169	0.022
17	17	0.327
18	18	0.847
19	19	0.00947
2	2	0.0238
20	20	0.0679
21	21	0.699
22	22	0.242
23	23	0.0137
24	24	0.453
25	25	0.655
26	26	0.904
27	27	0.318
28	28	0.766
29	29	0.148
3	3	0.671
30	30	0.038
31	31	0.468
32	32	1.99363e-9
33	33	0.233
34	34	0.233
35	35	0.67
36	36	0.0772
37	37	0.993
38	38	0.609
39	39	0.089
4	4	0.814
40	40	0.553
41	41	0.337
42	42	0.713
43	43	0.625
44	44	0.324
45	45	0.131
46	46	0.244
47	47	0.847
48	48	0.882
49	49	0.428
5	5	0.672
50	50	0.816
51	51	0.586
52	52	0.139
53	53	0.782
54	54	0.425
55	55	0.551
56	56	0.996
57	57	0.461
58	58	0.68
59	59	0.175
6	6	0.307
60	60	0.222
61	61	0.767
62	62	0.275
63	63	0.516
64	64	0.483
65	65	0.115
66	66	0.0563
67	67	0.448
68	68	0.436
69	69	0.247
7	7	0.806
70	70	0.535
71	71	0.753
72	72	0.914
73	73	0.972
74	74	0.2
75	75	0.405
76	76	0.144
77	77	0.0738
78	78	0.512
79	79	0.16
8	8	0.641
80	80	0.498
81	81	0.478
82	82	0.115
83	83	0.734
84	84	0.425
85	85	0.0344
86	86	0.518
87	87	0.0211
88	88	0.485
89	89	0.0727
9	9	0.477
90	90	0.202
91	91	0.0095
92	92	0.0502
93	93	0.736
94	94	0.45
95	95	0.0301
96	96	0.192
97	97	0.78
98	98	0.515
99	99	0.216

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11765

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010057 human umbilical cord - fetal sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0002331 (umbilical cord)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
0000478 (extraembryonic structure)
0010317 (germ layer / neural crest derived structure)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)
0010057 (human umbilical cord - fetal sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0000358 (blastocyst)
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|id=FF:10057-101H3
+|DRA_sample_Accession=CAGE@SAMD00004990
-|name=umbilical cord, fetal, donor1
+|accession_numbers=CAGE;DRX008755;DRR009627;DRZ001052;DRZ002437;DRZ012402;DRZ013787
-|sample_id=10057
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002331,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0001062,UBERON:0000478,UBERON:0010317
-|rna_tube_id=101H3
-|rna_box=101
-|rna_position=H3
-|sample_cell_lot=NA
-|sample_cell_catalog=NA
-|sample_company=Biochain
-|rna_lot_number=B110269
-|rna_catalog_number=Cat:RtHFN: Umbilical cor
-|sample_species=Human (Homo sapiens)
-|sample_strain=
-|sample_dev_stage=31 weeks fetus
-|sample_tissue=umbilical cord
-|sample_donor(cell lot)=1
-|sample_sex=male
-|sample_age=
-|sample_ethnicity=A?
-|rna_rin=
-|rna_od260/230=
-|rna_od260/280=
-|sample_cell_type=CELL MIXTURE - tissue sample
-|sample_cell_line=
-|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
-|sample_experimental_condition=
-|sample_disease=normal
-|rna_sample_type=total RNA
-|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
-|rna_weight_ug=10
-|rna_concentration=2.4
-|sample_note=
-|profile_hcage=CNhs11765,LSID820,release009,COMPLETED
-|profile_cagescan=,,,
-|profile_srnaseq=,,,
-|profile_rnaseq=,,,
 |ancestors_in_cell_lineage_facet=
-|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000087,UBERON:0000091,UBERON:0000358,UBERON:0000465,UBERON:0000468,UBERON:0000478,UBERON:0000479,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0001062,UBERON:0002050,UBERON:0002331,UBERON:0002532,UBERON:0003081,UBERON:0004120,UBERON:0005423,UBERON:0005728,UBERON:0007806,UBERON:0008780
 |ancestors_in_disease_facet=
-|sample_description=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000999,FF:0000004,FF:0010057
+|comment=
+|created_by=
+|creation_date=
+|data_phase=2
+|datafreeze_phase=2
+|def=
+|expression_enrichment_score=chr5:172662197..172662216,-!p1@NKX2-5!2.07!117.32!NKX2-5;;chr4:174451370..174451387,-!p1@HAND2!2.06!114.97!HAND2;;chr20:50179368..50179392,-!p2@NFATC2!2.04!138.44!NFATC2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.99!96.20!PEG3;;chr19:46801639..46801699,+!p1@HIF3A!1.98!93.86!HIF3A;;chr1:40105299..40105326,-!p1@HEYL!1.88!75.09!HEYL;;chr12:52437488..52437507,+!p2@NR4A1!1.76!56.31!NR4A1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.64!42.24!HOXC5;;chr4:57547454..57547469,-!p1@HOPX!1.64!42.24!HOPX;;chr20:62680984..62680999,-!p1@SOX18!1.63!53.97!SOX18;;chr4:111544219..111544240,-!p1@PITX2!1.59!37.54!PITX2;;chr8:11561684..11561751,+!p1@GATA4!1.56!35.20!GATA4;;chr1:201979703..201979721,+!p2@ELF3!1.53!32.85!ELF3;;chr7:35293685..35293718,-!p1@TBX20!1.46!28.16!TBX20;;chr19:45971246..45971265,+!p1@FOSB!1.45!488.05!FOSB;;chr15:42749722..42749739,-!p2@ZFP106!1.44!46.93!ZFP106;;chr1:201979743..201979762,+!p1@ELF3!1.43!25.81!ELF3;;chr4:111558135..111558198,-!p2@PITX2!1.43!25.81!PITX2;;chr4:174451350..174451363,-!p3@HAND2!1.43!25.81!HAND2;;chr18:19749541..19749557,+!p1@GATA6!1.42!77.43!GATA6;;chr20:30433396..30433414,-!p1@FOXS1!1.39!23.46!FOXS1;;chr14:105935396..105935413,+!p4@MTA1!1.39!23.46!MTA1;;chr6:126070769..126070801,+!p1@HEY2!1.37!25.81!HEY2;;chr11:113930425..113930471,+!p1@ZBTB16!1.35!30.50!ZBTB16;;chr8:106330656..106330684,+!p1@ZFPM2!1.34!53.97!ZFPM2;;chr6:134210243..134210257,+!p1@TCF21!1.34!21.12!TCF21;;chr4:174450089..174450153,-!p2@HAND2!1.34!21.12!HAND2;;chr18:19749386..19749404,+!p2@GATA6!1.32!28.16!GATA6;;chr6:19837592..19837621,+!p1@ID4!1.31!114.97!ID4;;chr16:73093174..73093209,-!p3@ZFHX3!1.31!25.81!ZFHX3;;chr5:158526917..158526932,-!p1@EBF1!1.30!46.93!EBF1;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.30!18.77!SEBOX;;chr2:176969228..176969260,+!p1@HOXD11!1.30!18.77!HOXD11;;chr10:119302232..119302265,+!p1@EMX2!1.30!18.77!EMX2;;chr11:47400078..47400106,-!p1@SPI1!1.30!18.77!SPI1;;chr14:38064429..38064486,-!p1@FOXA1!1.30!18.77!FOXA1;;chr14:75745523..75745537,+!p1@FOS!1.27!2029.64!FOS;;chr11:46299539..46299620,+!p2@CREB3L1!1.25!28.16!CREB3L1;;chr10:119303078..119303169,+!p2@EMX2!1.24!16.42!EMX2;;chr11:34642612..34642646,+!p1@EHF!1.24!16.42!EHF;;chr4:57522598..57522664,-!p3@HOPX!1.24!16.42!HOPX;;chrY:21906594..21906622,-!p1@KDM5D!1.24!16.42!KDM5D;;chr6:144289132..144289134,-!p3@PLAGL1!1.21!35.20!PLAGL1;;chr6:144329384..144329405,-!p1@PLAGL1!1.19!164.25!PLAGL1;;chr16:54320617..54320643,-!p3@IRX3!1.19!18.77!IRX3;;chr18:53068911..53068935,-!p4@TCF4!1.19!16.42!TCF4;;chr7:42276787..42276815,-!p1@GLI3!1.18!37.54!GLI3;;chr5:158527104..158527135,-!p4@EBF1!1.18!14.08!EBF1;;chr8:102504979..102505010,+!p2@GRHL2!1.18!14.08!GRHL2;;chr19:46800289..46800327,+!p2@HIF3A!1.18!14.08!HIF3A;;chr21:39870339..39870443,-!p1@ERG!1.18!14.08!ERG;;chr11:125034640..125034655,+!p1@PKNOX2!1.18!14.08!PKNOX2;;chr20:55204351..55204377,+!p1@TFAP2C!1.14!16.42!TFAP2C;;chr2:145277882..145277967,-!p3@ZEB2!1.12!21.12!ZEB2;;chr6:85474299..85474324,-!p1@TBX18!1.11!21.12!TBX18;;chr18:19749517..19749531,+!p3@GATA6!1.11!21.12!GATA6;;chr1:214161272..214161322,+!p1@PROX1!1.10!16.42!PROX1;;chr10:8096631..8096660,+!p1@GATA3!1.10!14.08!GATA3;;chr10:119302508..119302559,+!p5@EMX2!1.10!11.73!EMX2;;chr11:113930401..113930422,+!p3@ZBTB16!1.10!11.73!ZBTB16;;chr12:54779511..54779577,-!p5@ZNF385A!1.10!11.73!ZNF385A;;chr5:2751762..2751784,-!p1@IRX2!1.10!11.73!IRX2;;chr5:50679228..50679288,+!p1@ISL1!1.10!11.73!ISL1;;chr6:34524093..34524135,-!p1@SPDEF!1.10!11.73!SPDEF;;chr8:25902876..25902936,-!p1@EBF2!1.10!11.73!EBF2;;chr8:93074803..93074845,-!p1@RUNX1T1!1.10!11.73!RUNX1T1;;chr2:119605214..119605230,-!p1@EN1!1.10!11.73!EN1;;chr1:209979411..209979433,-!p2@IRF6!1.10!11.73!IRF6;;chr17:48072574..48072597,-!p1@DLX3!1.10!11.73!DLX3;;chr5:137804484..137804498,+!p2@EGR1!1.08!44.58!EGR1;;chr14:75746722..75746777,+!p2@FOS!1.08!14.08!FOS;;chr12:24715376..24715432,-!p1@SOX5!1.08!14.08!SOX5;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.08!11.73!GLIS1;;chr16:79634624..79634642,-!p1@MAF!1.07!42.24!MAF;;chr19:33793430..33793447,-!p1@CEBPA!1.06!44.58!CEBPA;;chr16:79634595..79634620,-!p2@MAF!1.05!18.77!MAF;;chr3:12330560..12330579,+!p1@PPARG!1.05!11.73!PPARG;;chr6:1312325..1312340,+!p1@FOXQ1!1.04!16.42!FOXQ1;;chr11:46299199..46299233,+!p1@CREB3L1!1.02!49.27!CREB3L1;;chr10:119302268..119302282,+!p4@EMX2!1.02!9.39!EMX2;;chr11:129245526..129245553,+!p1@BARX2!1.02!9.39!BARX2;;chr11:65554528..65554546,+!p1@OVOL1!1.02!9.39!OVOL1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.02!9.39!HOXC5;;chr12:56414795..56414836,+!p4@IKZF4!1.02!9.39!IKZF4;;chr13:37494248..37494260,-!p3@SMAD9!1.02!9.39!SMAD9;;chr22:38380543..38380569,-!p1@SOX10!1.02!9.39!SOX10;;chr2:122042770..122042785,-!p1@TFCP2L1!1.02!9.39!TFCP2L1;;chr3:181429704..181429722,+!p1@SOX2!1.02!9.39!SOX2;;chr1:2985760..2985774,+!p1@PRDM16!1.02!9.39!PRDM16;;chr1:40367668..40367684,-!p2@MYCL1!1.02!9.39!MYCL1;;chr5:158527139..158527161,-!p5@EBF1!1.02!9.39!EBF1;;chr5:172662303..172662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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002331
+|ffid_belonging_in_development=UBERON:0000358,UBERON:0002532,UBERON:0006603,UBERON:0010316
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 66: / Line 41: @@
 |fonse_treatment=
 |fonse_treatment_closure=
-|top_motifs=
+|has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/umbilical%2520cord%252c%2520fetal%252c%2520donor1.CNhs11765.10057-101H3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/umbilical%2520cord%252c%2520fetal%252c%2520donor1.CNhs11765.10057-101H3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/umbilical%2520cord%252c%2520fetal%252c%2520donor1.CNhs11765.10057-101H3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/umbilical%2520cord%252c%2520fetal%252c%2520donor1.CNhs11765.10057-101H3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/umbilical%2520cord%252c%2520fetal%252c%2520donor1.CNhs11765.10057-101H3.hg38.nobarcode.ctss.bed.gz
+|id=FF:10057-101H3
+|is_a=EFO:0002091;;FF:0010057
+|is_obsolete=
+|library_id=CNhs11765
+|library_id_phase_based=2:CNhs11765
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10057
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10057
+|name=umbilical cord, fetal, donor1
+|namespace=FANTOM5
+|part_of=
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+|profile_hcage=CNhs11765,LSID820,release009,COMPLETED
+|profile_rnaseq=
+|profile_srnaseq=,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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+|rna_box=101
+|rna_catalog_number=Cat:RtHFN: Umbilical cor
+|rna_concentration=2.4
+|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
+|rna_lot_number=B110269
+|rna_od260/230=
+|rna_od260/280=
+|rna_position=H3
+|rna_rin=
+|rna_sample_type=total RNA
+|rna_tube_id=101H3
+|rna_weight_ug=10
+|sample_age=
+|sample_category=tissues
+|sample_cell_catalog=NA
+|sample_cell_line=
+|sample_cell_lot=NA
+|sample_cell_type=CELL MIXTURE - tissue sample
+|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
+|sample_company=Biochain
+|sample_description=
+|sample_dev_stage=31 weeks fetus
+|sample_disease=normal
+|sample_donor(cell lot)=1
+|sample_ethnicity=A?
+|sample_experimental_condition=
+|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;6.24938088034506e-238!GO:0005737;cytoplasm;6.99755277611723e-195!GO:0044444;cytoplasmic part;9.11586745210381e-130!GO:0043226;organelle;6.56966241889374e-125!GO:0043229;intracellular organelle;1.09994820983142e-124!GO:0044422;organelle part;6.63977262546244e-102!GO:0044446;intracellular organelle part;2.04066486419296e-100!GO:0005515;protein binding;7.95552636010475e-99!GO:0043231;intracellular membrane-bound organelle;1.2576118175722e-96!GO:0043227;membrane-bound organelle;1.26785970016668e-96!GO:0032991;macromolecular complex;1.24741225352181e-70!GO:0005739;mitochondrion;3.00650310239355e-49!GO:0030529;ribonucleoprotein complex;1.21338830647201e-47!GO:0044238;primary metabolic process;6.55514300049415e-43!GO:0019538;protein metabolic process;6.5932750494421e-43!GO:0016043;cellular component organization and biogenesis;1.70582844583294e-42!GO:0043233;organelle lumen;1.10270569734549e-41!GO:0031974;membrane-enclosed lumen;1.10270569734549e-41!GO:0044237;cellular metabolic process;6.18422563088032e-41!GO:0043234;protein complex;1.70194915450706e-40!GO:0031090;organelle membrane;3.62690033423205e-40!GO:0003723;RNA binding;6.99601249916465e-39!GO:0044260;cellular macromolecule metabolic process;4.52026083855527e-37!GO:0044429;mitochondrial part;8.41539166045283e-37!GO:0043228;non-membrane-bound organelle;1.6303119744023e-36!GO:0043232;intracellular non-membrane-bound organelle;1.6303119744023e-36!GO:0043170;macromolecule metabolic process;2.24969884708192e-36!GO:0044267;cellular protein metabolic process;2.81191825904821e-35!GO:0031967;organelle envelope;1.10456246341771e-32!GO:0031975;envelope;1.4863828615851e-32!GO:0005840;ribosome;2.54982310427871e-32!GO:0044428;nuclear part;4.58730752299603e-32!GO:0005829;cytosol;2.6767182383759e-30!GO:0006412;translation;4.88948262546151e-30!GO:0015031;protein transport;1.04428905644409e-29!GO:0033036;macromolecule localization;1.08351249132085e-29!GO:0008104;protein localization;4.56087669645924e-28!GO:0045184;establishment of protein localization;6.14710354657186e-28!GO:0009058;biosynthetic process;7.51392210471363e-28!GO:0003735;structural constituent of ribosome;8.69599188172343e-28!GO:0046907;intracellular transport;9.94739561726731e-27!GO:0033279;ribosomal subunit;8.177762773655e-26!GO:0009059;macromolecule biosynthetic process;1.55571551750766e-25!GO:0005740;mitochondrial envelope;7.3096831765008e-25!GO:0044249;cellular biosynthetic process;1.21705895752857e-24!GO:0031966;mitochondrial membrane;1.6267044080747e-24!GO:0065003;macromolecular complex assembly;6.35105702871525e-24!GO:0022607;cellular component assembly;9.68318787352323e-24!GO:0019866;organelle inner membrane;2.3472520397995e-23!GO:0016071;mRNA metabolic process;4.82847573137487e-23!GO:0005743;mitochondrial inner membrane;5.36477373163961e-22!GO:0006886;intracellular protein transport;9.16758065484788e-22!GO:0005783;endoplasmic reticulum;3.66463527618385e-21!GO:0006119;oxidative phosphorylation;9.94019541024922e-21!GO:0008380;RNA splicing;1.08999631957939e-20!GO:0005634;nucleus;2.57268455330758e-20!GO:0008092;cytoskeletal protein binding;9.84720321911692e-20!GO:0006396;RNA processing;1.26577147192183e-19!GO:0006397;mRNA processing;2.12748412211942e-19!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.92392773644936e-19!GO:0048770;pigment granule;8.31655888321639e-19!GO:0042470;melanosome;8.31655888321639e-19!GO:0044455;mitochondrial membrane part;1.81109949679615e-18!GO:0006996;organelle organization and biogenesis;2.48803228061672e-18!GO:0031981;nuclear lumen;3.31621868339358e-18!GO:0044445;cytosolic part;1.08323820384786e-17!GO:0005746;mitochondrial respiratory chain;2.03548150028254e-17!GO:0051641;cellular localization;2.15065156180685e-17!GO:0051649;establishment of cellular localization;7.26863126738398e-17!GO:0012505;endomembrane system;1.32957501381091e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.48769033534241e-16!GO:0050136;NADH dehydrogenase (quinone) activity;1.03283378149821e-15!GO:0003954;NADH dehydrogenase activity;1.03283378149821e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.03283378149821e-15!GO:0031980;mitochondrial lumen;1.58679676420127e-15!GO:0005759;mitochondrial matrix;1.58679676420127e-15!GO:0008134;transcription factor binding;2.62636545162087e-15!GO:0015629;actin cytoskeleton;4.40092828395077e-15!GO:0006457;protein folding;1.78404673287397e-14!GO:0005681;spliceosome;1.96017858484508e-14!GO:0005794;Golgi apparatus;3.81338119075063e-14!GO:0044432;endoplasmic reticulum part;7.59139481020121e-14!GO:0015935;small ribosomal subunit;1.21663240099494e-13!GO:0030964;NADH dehydrogenase complex (quinone);1.52325301144057e-13!GO:0045271;respiratory chain complex I;1.52325301144057e-13!GO:0005747;mitochondrial respiratory chain complex I;1.52325301144057e-13!GO:0005856;cytoskeleton;2.22647361010512e-13!GO:0016192;vesicle-mediated transport;3.55400990735427e-13!GO:0003779;actin binding;3.55400990735427e-13!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.90857041300225e-13!GO:0015934;large ribosomal subunit;4.27998235241412e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.50272596098242e-13!GO:0022618;protein-RNA complex assembly;4.86478859234415e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.7519859510806e-13!GO:0042775;organelle ATP synthesis coupled electron transport;9.62674174986513e-13!GO:0042773;ATP synthesis coupled electron transport;9.62674174986513e-13!GO:0048523;negative regulation of cellular process;9.62674174986513e-13!GO:0048193;Golgi vesicle transport;1.50107553859682e-12!GO:0016462;pyrophosphatase activity;1.86860030767165e-12!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.09717983587049e-12!GO:0008135;translation factor activity, nucleic acid binding;2.6331727212765e-12!GO:0016817;hydrolase activity, acting on acid anhydrides;2.6331727212765e-12!GO:0017111;nucleoside-triphosphatase activity;4.71788020274946e-12!GO:0048519;negative regulation of biological process;6.99839929832704e-12!GO:0044265;cellular macromolecule catabolic process;7.0012230303124e-12!GO:0005654;nucleoplasm;1.52532969387071e-11!GO:0044449;contractile fiber part;1.71824371136703e-11!GO:0051186;cofactor metabolic process;2.75746209294853e-11!GO:0043292;contractile fiber;2.98161634015931e-11!GO:0030029;actin filament-based process;3.1679536346594e-11!GO:0006605;protein targeting;4.38997174033496e-11!GO:0000166;nucleotide binding;4.90124531866054e-11!GO:0044257;cellular protein catabolic process;7.92336470554898e-11!GO:0006461;protein complex assembly;9.24113609239358e-11!GO:0005788;endoplasmic reticulum lumen;9.89766094266875e-11!GO:0051603;proteolysis involved in cellular protein catabolic process;1.02117384625179e-10!GO:0019941;modification-dependent protein catabolic process;1.82816426318116e-10!GO:0043632;modification-dependent macromolecule catabolic process;1.82816426318116e-10!GO:0000502;proteasome complex (sensu Eukaryota);1.96646899458523e-10!GO:0006511;ubiquitin-dependent protein catabolic process;2.12498883620587e-10!GO:0030036;actin cytoskeleton organization and biogenesis;2.95134059474322e-10!GO:0008307;structural constituent of muscle;3.2491498358645e-10!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.33516822857158e-10!GO:0051082;unfolded protein binding;4.25421454005879e-10!GO:0009057;macromolecule catabolic process;4.68960900989934e-10!GO:0030016;myofibril;8.30403232229448e-10!GO:0006512;ubiquitin cycle;9.28026708719164e-10!GO:0043285;biopolymer catabolic process;1.06818579224131e-09!GO:0044248;cellular catabolic process;1.21894037162896e-09!GO:0043283;biopolymer metabolic process;1.22625637966547e-09!GO:0044451;nucleoplasm part;1.28388315254416e-09!GO:0016874;ligase activity;1.40258615459886e-09!GO:0012501;programmed cell death;1.47483897031047e-09!GO:0030163;protein catabolic process;1.66378699570097e-09!GO:0009055;electron carrier activity;2.32589854492206e-09!GO:0008565;protein transporter activity;2.79240597698514e-09!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.08672075851528e-09!GO:0005761;mitochondrial ribosome;3.08672075851528e-09!GO:0000313;organellar ribosome;3.08672075851528e-09!GO:0006915;apoptosis;3.16644896789162e-09!GO:0010467;gene expression;4.14819378464668e-09!GO:0006446;regulation of translational initiation;4.55858053419691e-09!GO:0005793;ER-Golgi intermediate compartment;4.70180145706041e-09!GO:0007010;cytoskeleton organization and biogenesis;4.7698532617242e-09!GO:0007517;muscle development;4.7698532617242e-09!GO:0031988;membrane-bound vesicle;5.93008866102867e-09!GO:0044420;extracellular matrix part;6.20462918153667e-09!GO:0008219;cell death;6.71992513568648e-09!GO:0016265;death;6.71992513568648e-09!GO:0006413;translational initiation;8.45019510347216e-09!GO:0031982;vesicle;8.45019510347216e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;8.62176787854548e-09!GO:0006732;coenzyme metabolic process;8.64364348704292e-09!GO:0003743;translation initiation factor activity;8.70380057797341e-09!GO:0005635;nuclear envelope;9.08037357348323e-09!GO:0016023;cytoplasmic membrane-bound vesicle;9.98635599664196e-09!GO:0003712;transcription cofactor activity;1.05778012058056e-08!GO:0008361;regulation of cell size;1.44400761898237e-08!GO:0031410;cytoplasmic vesicle;1.50366874912152e-08!GO:0016049;cell growth;1.53060388074992e-08!GO:0030017;sarcomere;2.38023014468492e-08!GO:0005581;collagen;3.83254582952932e-08!GO:0042175;nuclear envelope-endoplasmic reticulum network;5.20714620565907e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;9.08215233107287e-08!GO:0016564;transcription repressor activity;1.00247797061352e-07!GO:0005789;endoplasmic reticulum membrane;1.00490433248167e-07!GO:0006366;transcription from RNA polymerase II promoter;1.03268449580903e-07!GO:0009060;aerobic respiration;1.25417633817208e-07!GO:0019829;cation-transporting ATPase activity;1.3430861485884e-07!GO:0031965;nuclear membrane;1.42680010658988e-07!GO:0006913;nucleocytoplasmic transport;1.49274276747861e-07!GO:0043412;biopolymer modification;1.58506802342714e-07!GO:0045333;cellular respiration;1.75226228010669e-07!GO:0032553;ribonucleotide binding;2.42084787886937e-07!GO:0032555;purine ribonucleotide binding;2.42084787886937e-07!GO:0051169;nuclear transport;2.47914830527901e-07!GO:0006464;protein modification process;2.80106715059282e-07!GO:0015986;ATP synthesis coupled proton transport;3.17482796651973e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.17482796651973e-07!GO:0016469;proton-transporting two-sector ATPase complex;3.23680861290144e-07!GO:0017038;protein import;3.23680861290144e-07!GO:0000398;nuclear mRNA splicing, via spliceosome;3.23680861290144e-07!GO:0000375;RNA splicing, via transesterification reactions;3.23680861290144e-07!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.23680861290144e-07!GO:0006163;purine nucleotide metabolic process;3.62776230993825e-07!GO:0001558;regulation of cell growth;4.24061555247956e-07!GO:0017076;purine nucleotide binding;4.60663436940662e-07!GO:0015980;energy derivation by oxidation of organic compounds;4.61673735374173e-07!GO:0006099;tricarboxylic acid cycle;4.89366687933122e-07!GO:0046356;acetyl-CoA catabolic process;4.89366687933122e-07!GO:0009199;ribonucleoside triphosphate metabolic process;5.10255580354868e-07!GO:0009150;purine ribonucleotide metabolic process;5.15723325483532e-07!GO:0015078;hydrogen ion transmembrane transporter activity;5.34336115245508e-07!GO:0051246;regulation of protein metabolic process;5.50508604583982e-07!GO:0005730;nucleolus;6.37016881618003e-07!GO:0006084;acetyl-CoA metabolic process;6.98794525616807e-07!GO:0016887;ATPase activity;7.14398570802259e-07!GO:0046034;ATP metabolic process;7.80184788088756e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.92015979062968e-07!GO:0009144;purine nucleoside triphosphate metabolic process;7.92015979062968e-07!GO:0009056;catabolic process;1.00376227396071e-06!GO:0009141;nucleoside triphosphate metabolic process;1.08459049695368e-06!GO:0006091;generation of precursor metabolites and energy;1.23388621212065e-06!GO:0043687;post-translational protein modification;1.39680987554063e-06!GO:0009259;ribonucleotide metabolic process;1.49154754070639e-06!GO:0051187;cofactor catabolic process;2.37140508414204e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.59469774711912e-06!GO:0009109;coenzyme catabolic process;2.61466887962286e-06!GO:0030120;vesicle coat;2.61466887962286e-06!GO:0030662;coated vesicle membrane;2.61466887962286e-06!GO:0003714;transcription corepressor activity;3.04984546938716e-06!GO:0043069;negative regulation of programmed cell death;3.30301966700656e-06!GO:0042802;identical protein binding;3.31746002593596e-06!GO:0007049;cell cycle;4.83021364280361e-06!GO:0009142;nucleoside triphosphate biosynthetic process;4.83021364280361e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.83021364280361e-06!GO:0031252;leading edge;4.93771509583427e-06!GO:0042623;ATPase activity, coupled;4.93771509583427e-06!GO:0043066;negative regulation of apoptosis;5.04350947205652e-06!GO:0004842;ubiquitin-protein ligase activity;6.5359100593008e-06!GO:0006754;ATP biosynthetic process;6.70788256426143e-06!GO:0006753;nucleoside phosphate metabolic process;6.70788256426143e-06!GO:0048475;coated membrane;6.9381144376654e-06!GO:0030117;membrane coat;6.9381144376654e-06!GO:0005768;endosome;7.33774005171877e-06!GO:0003924;GTPase activity;7.3454954502851e-06!GO:0031324;negative regulation of cellular metabolic process;7.36979730578932e-06!GO:0006164;purine nucleotide biosynthetic process;7.39299083774088e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;7.39299083774088e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;7.39299083774088e-06!GO:0008639;small protein conjugating enzyme activity;7.49716097790636e-06!GO:0044431;Golgi apparatus part;8.00770084425343e-06!GO:0045259;proton-transporting ATP synthase complex;8.57180140643013e-06!GO:0005773;vacuole;9.4143799159781e-06!GO:0006606;protein import into nucleus;1.00706175698614e-05!GO:0009152;purine ribonucleotide biosynthetic process;1.10180929816725e-05!GO:0005583;fibrillar collagen;1.17694825760629e-05!GO:0016491;oxidoreductase activity;1.18204361186661e-05!GO:0006888;ER to Golgi vesicle-mediated transport;1.52179134446204e-05!GO:0009892;negative regulation of metabolic process;1.52732694579284e-05!GO:0051170;nuclear import;1.66210206883004e-05!GO:0006916;anti-apoptosis;1.6626724906818e-05!GO:0051789;response to protein stimulus;2.13318971328535e-05!GO:0006986;response to unfolded protein;2.13318971328535e-05!GO:0019787;small conjugating protein ligase activity;2.18714020930307e-05!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.21027769541963e-05!GO:0006259;DNA metabolic process;2.62773974657449e-05!GO:0044453;nuclear membrane part;2.68757787270138e-05!GO:0016604;nuclear body;2.76512314579874e-05!GO:0005798;Golgi-associated vesicle;2.76512314579874e-05!GO:0016044;membrane organization and biogenesis;2.91143507288123e-05!GO:0044262;cellular carbohydrate metabolic process;2.9886266861259e-05!GO:0005865;striated muscle thin filament;3.60246208907791e-05!GO:0042981;regulation of apoptosis;3.6975872430167e-05!GO:0009260;ribonucleotide biosynthetic process;3.75833939641106e-05!GO:0006793;phosphorus metabolic process;3.92109690235055e-05!GO:0006796;phosphate metabolic process;3.92109690235055e-05!GO:0043067;regulation of programmed cell death;4.64452859741114e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;4.76513787864003e-05!GO:0016607;nuclear speck;5.23546153676244e-05!GO:0005201;extracellular matrix structural constituent;6.2302070222638e-05!GO:0005741;mitochondrial outer membrane;6.29411340955456e-05!GO:0019867;outer membrane;6.44683901188378e-05!GO:0051128;regulation of cellular component organization and biogenesis;6.5468168825987e-05!GO:0016481;negative regulation of transcription;6.94055823720824e-05!GO:0040008;regulation of growth;7.00932783405916e-05!GO:0031968;organelle outer membrane;7.21492787760281e-05!GO:0005525;GTP binding;7.28744889436295e-05!GO:0030532;small nuclear ribonucleoprotein complex;8.85721853089273e-05!GO:0000323;lytic vacuole;9.03840390053132e-05!GO:0005764;lysosome;9.03840390053132e-05!GO:0032559;adenyl ribonucleotide binding;9.22613151534866e-05!GO:0006950;response to stress;9.83302043045767e-05!GO:0005912;adherens junction;9.94515704871493e-05!GO:0005524;ATP binding;0.000104346064395644!GO:0016879;ligase activity, forming carbon-nitrogen bonds;0.000108320873750744!GO:0006613;cotranslational protein targeting to membrane;0.000110777424038233!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000112810758619197!GO:0006979;response to oxidative stress;0.000118150281261558!GO:0045786;negative regulation of progression through cell cycle;0.000125918233840928!GO:0019899;enzyme binding;0.000137789279505294!GO:0022890;inorganic cation transmembrane transporter activity;0.000141179965103824!GO:0051188;cofactor biosynthetic process;0.000175373169523101!GO:0030554;adenyl nucleotide binding;0.000175373169523101!GO:0048471;perinuclear region of cytoplasm;0.000187205483470781!GO:0000139;Golgi membrane;0.000197204056937149!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000208493855857361!GO:0016310;phosphorylation;0.000216813989427786!GO:0030133;transport vesicle;0.00025211697070791!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000252267146894057!GO:0031589;cell-substrate adhesion;0.000257962279315253!GO:0030308;negative regulation of cell growth;0.000268589802085008!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000271556260690182!GO:0000245;spliceosome assembly;0.000274360924628314!GO:0045792;negative regulation of cell size;0.000292723963748723!GO:0051427;hormone receptor binding;0.000325911474852614!GO:0016853;isomerase activity;0.000331026801878535!GO:0005578;proteinaceous extracellular matrix;0.000336353621277391!GO:0005762;mitochondrial large ribosomal subunit;0.000356354638069783!GO:0000315;organellar large ribosomal subunit;0.000356354638069783!GO:0005839;proteasome core complex (sensu Eukaryota);0.000369766352958356!GO:0030867;rough endoplasmic reticulum membrane;0.000415567026310985!GO:0001666;response to hypoxia;0.000431255380547784!GO:0005643;nuclear pore;0.000437199406007405!GO:0016881;acid-amino acid ligase activity;0.000440492185421583!GO:0006752;group transfer coenzyme metabolic process;0.000449072113642794!GO:0005791;rough endoplasmic reticulum;0.000451613606544856!GO:0016859;cis-trans isomerase activity;0.000469286631029836!GO:0032561;guanyl ribonucleotide binding;0.000486797288900125!GO:0019001;guanyl nucleotide binding;0.000486797288900125!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000503026003237241!GO:0009117;nucleotide metabolic process;0.000521326068456018!GO:0008286;insulin receptor signaling pathway;0.000535365519705962!GO:0000074;regulation of progression through cell cycle;0.00054373650505084!GO:0019843;rRNA binding;0.000549463255693663!GO:0007005;mitochondrion organization and biogenesis;0.000551935039095597!GO:0005048;signal sequence binding;0.000577852346598401!GO:0031674;I band;0.000591598915353898!GO:0035257;nuclear hormone receptor binding;0.000628871156237457!GO:0001725;stress fiber;0.000632068872686514!GO:0032432;actin filament bundle;0.000632068872686514!GO:0033673;negative regulation of kinase activity;0.000688837820366211!GO:0006469;negative regulation of protein kinase activity;0.000688837820366211!GO:0016787;hydrolase activity;0.000705765793441256!GO:0065002;intracellular protein transport across a membrane;0.000715693850713802!GO:0051726;regulation of cell cycle;0.000720847678584764!GO:0014706;striated muscle development;0.000746161667569396!GO:0003012;muscle system process;0.000804162022251747!GO:0006936;muscle contraction;0.000804162022251747!GO:0007264;small GTPase mediated signal transduction;0.000809163889147085!GO:0003697;single-stranded DNA binding;0.000829373936094!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000829373936094!GO:0015399;primary active transmembrane transporter activity;0.000829373936094!GO:0050789;regulation of biological process;0.000850039593148273!GO:0016197;endosome transport;0.000857885262090053!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.000857885262090053!GO:0004812;aminoacyl-tRNA ligase activity;0.000857885262090053!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.000857885262090053!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000919896132284444!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000960238220764178!GO:0008654;phospholipid biosynthetic process;0.000963344109903211!GO:0004298;threonine endopeptidase activity;0.00105185790262745!GO:0043623;cellular protein complex assembly;0.00106430368211665!GO:0001944;vasculature development;0.00111160347312457!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.00111160347312457!GO:0007160;cell-matrix adhesion;0.00124822488004014!GO:0009108;coenzyme biosynthetic process;0.00133714488738692!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00133714488738692!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00133714488738692!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00133714488738692!GO:0051920;peroxiredoxin activity;0.0013774345313193!GO:0048522;positive regulation of cellular process;0.0014679471631514!GO:0022402;cell cycle process;0.00149552865255445!GO:0030027;lamellipodium;0.00154036912141907!GO:0003713;transcription coactivator activity;0.00155742757704667!GO:0005770;late endosome;0.00156366921875051!GO:0000902;cell morphogenesis;0.00162277845628721!GO:0032989;cellular structure morphogenesis;0.00162277845628721!GO:0043021;ribonucleoprotein binding;0.00164547324319386!GO:0006941;striated muscle contraction;0.00166415882373055!GO:0051348;negative regulation of transferase activity;0.00166415882373055!GO:0001568;blood vessel development;0.00167422463968705!GO:0044430;cytoskeletal part;0.0016768454137647!GO:0045893;positive regulation of transcription, DNA-dependent;0.00168734100735313!GO:0043038;amino acid activation;0.0017266381856696!GO:0006418;tRNA aminoacylation for protein translation;0.0017266381856696!GO:0043039;tRNA aminoacylation;0.0017266381856696!GO:0045926;negative regulation of growth;0.0017882511752391!GO:0005913;cell-cell adherens junction;0.00179492221956515!GO:0008250;oligosaccharyl transferase complex;0.001828243791358!GO:0045892;negative regulation of transcription, DNA-dependent;0.00187962416755986!GO:0046930;pore complex;0.00191682819260313!GO:0005667;transcription factor complex;0.00198548636428238!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00205067064447454!GO:0043566;structure-specific DNA binding;0.00229699817800736!GO:0005586;collagen type III;0.00235109728339768!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00236888081299237!GO:0004576;oligosaccharyl transferase activity;0.00238529900532988!GO:0033116;ER-Golgi intermediate compartment membrane;0.00242343783299085!GO:0006325;establishment and/or maintenance of chromatin architecture;0.00252127991770086!GO:0030663;COPI coated vesicle membrane;0.0026147107359551!GO:0030126;COPI vesicle coat;0.0026147107359551!GO:0006333;chromatin assembly or disassembly;0.00270913126332933!GO:0016563;transcription activator activity;0.00272567505381117!GO:0043284;biopolymer biosynthetic process;0.00282403424691459!GO:0043492;ATPase activity, coupled to movement of substances;0.00282403424691459!GO:0045941;positive regulation of transcription;0.00285360237882296!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.00285736029908028!GO:0048518;positive regulation of biological process;0.00287074962293481!GO:0006891;intra-Golgi vesicle-mediated transport;0.00287800083288161!GO:0007167;enzyme linked receptor protein signaling pathway;0.00305671061749381!GO:0007179;transforming growth factor beta receptor signaling pathway;0.00310372507671833!GO:0035258;steroid hormone receptor binding;0.00311004377187117!GO:0051270;regulation of cell motility;0.00312345279525293!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00313578520714555!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00317889529273175!GO:0060047;heart contraction;0.00319276077438872!GO:0003015;heart process;0.00319276077438872!GO:0022415;viral reproductive process;0.00332323252495938!GO:0005885;Arp2/3 protein complex;0.00333661366100976!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.00336653398577418!GO:0033043;regulation of organelle organization and biogenesis;0.00336653398577418!GO:0008610;lipid biosynthetic process;0.00340026824150277!GO:0006897;endocytosis;0.00347179246376297!GO:0010324;membrane invagination;0.00347179246376297!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00349976135201473!GO:0051329;interphase of mitotic cell cycle;0.00361841947398321!GO:0005769;early endosome;0.00369829583371121!GO:0050657;nucleic acid transport;0.00369829583371121!GO:0051236;establishment of RNA localization;0.00369829583371121!GO:0050658;RNA transport;0.00369829583371121!GO:0030018;Z disc;0.00378065130646907!GO:0031032;actomyosin structure organization and biogenesis;0.00384137032982388!GO:0030132;clathrin coat of coated pit;0.00388122862439592!GO:0048468;cell development;0.00399656782170554!GO:0006403;RNA localization;0.00419902824162452!GO:0045454;cell redox homeostasis;0.00429161583195193!GO:0051325;interphase;0.00451875380096744!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00455173127549887!GO:0044440;endosomal part;0.00456189863589248!GO:0010008;endosome membrane;0.00456189863589248!GO:0006323;DNA packaging;0.00464672554937423!GO:0000314;organellar small ribosomal subunit;0.00467439550258813!GO:0005763;mitochondrial small ribosomal subunit;0.00467439550258813!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00471046922690048!GO:0005905;coated pit;0.00471147416706267!GO:0042692;muscle cell differentiation;0.00473666095221892!GO:0032446;protein modification by small protein conjugation;0.00473889178278054!GO:0043488;regulation of mRNA stability;0.00487354091880043!GO:0043487;regulation of RNA stability;0.00487354091880043!GO:0030934;anchoring collagen;0.00494493209840961!GO:0009719;response to endogenous stimulus;0.00495608777935629!GO:0004860;protein kinase inhibitor activity;0.00509328297893234!GO:0006818;hydrogen transport;0.00522746687214812!GO:0003746;translation elongation factor activity;0.00536310802058098!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00537530217775586!GO:0016567;protein ubiquitination;0.00537530217775586!GO:0065004;protein-DNA complex assembly;0.00549162790065546!GO:0015630;microtubule cytoskeleton;0.00555240630121998!GO:0001516;prostaglandin biosynthetic process;0.00559277428102396!GO:0046457;prostanoid biosynthetic process;0.00559277428102396!GO:0030137;COPI-coated vesicle;0.00567809605842639!GO:0051252;regulation of RNA metabolic process;0.00569021573338807!GO:0000785;chromatin;0.00571433922145628!GO:0015992;proton transport;0.00575287079691609!GO:0000151;ubiquitin ligase complex;0.00579203018241951!GO:0030100;regulation of endocytosis;0.00592607492388863!GO:0007015;actin filament organization;0.00603156650447525!GO:0017166;vinculin binding;0.00608377420542544!GO:0006334;nucleosome assembly;0.00620917541403587!GO:0001726;ruffle;0.00673176833993438!GO:0040012;regulation of locomotion;0.00674935636547626!GO:0040011;locomotion;0.00675343688957088!GO:0006892;post-Golgi vesicle-mediated transport;0.00694725323655523!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00733740534938324!GO:0045445;myoblast differentiation;0.00733740534938324!GO:0030659;cytoplasmic vesicle membrane;0.00771522994346463!GO:0004386;helicase activity;0.00783135378207257!GO:0030658;transport vesicle membrane;0.00783135378207257!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00795109341765409!GO:0008154;actin polymerization and/or depolymerization;0.0081117694240467!GO:0006974;response to DNA damage stimulus;0.00820238525361039!GO:0008016;regulation of heart contraction;0.00835151622005972!GO:0006414;translational elongation;0.00843451949157575!GO:0007050;cell cycle arrest;0.00848636537772944!GO:0046983;protein dimerization activity;0.00848636537772944!GO:0003724;RNA helicase activity;0.00848636537772944!GO:0030118;clathrin coat;0.00872347549527863!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00883011855181939!GO:0048659;smooth muscle cell proliferation;0.00907938618735545!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00907938618735545!GO:0015002;heme-copper terminal oxidase activity;0.00907938618735545!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00907938618735545!GO:0004129;cytochrome-c oxidase activity;0.00907938618735545!GO:0030134;ER to Golgi transport vesicle;0.00911381632969753!GO:0019752;carboxylic acid metabolic process;0.00930630884449534!GO:0048500;signal recognition particle;0.00933536977973666!GO:0005861;troponin complex;0.00936771866434618!GO:0050794;regulation of cellular process;0.00977981697829402!GO:0030127;COPII vesicle coat;0.00977981697829402!GO:0012507;ER to Golgi transport vesicle membrane;0.00977981697829402!GO:0050811;GABA receptor binding;0.00994700315904772!GO:0007243;protein kinase cascade;0.00996362154461281!GO:0042254;ribosome biogenesis and assembly;0.0100765042440935!GO:0051287;NAD binding;0.0100983410210383!GO:0006007;glucose catabolic process;0.0102350071791408!GO:0007519;skeletal muscle development;0.0102511518613472!GO:0006082;organic acid metabolic process;0.0103284899063219!GO:0008026;ATP-dependent helicase activity;0.0108656247463486!GO:0048514;blood vessel morphogenesis;0.0112460189869521!GO:0012506;vesicle membrane;0.0113732878017627!GO:0016529;sarcoplasmic reticulum;0.0114076307651549!GO:0016528;sarcoplasm;0.0114076307651549!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0115158486821539!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0115158486821539!GO:0019318;hexose metabolic process;0.0115227662391804!GO:0006635;fatty acid beta-oxidation;0.0117031073729883!GO:0005604;basement membrane;0.0117866061803693!GO:0006612;protein targeting to membrane;0.0118087481285171!GO:0030660;Golgi-associated vesicle membrane;0.01202719307807!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0121047460010917!GO:0032535;regulation of cellular component size;0.0121969921769374!GO:0005869;dynactin complex;0.012307123863978!GO:0003729;mRNA binding;0.012472704853107!GO:0001527;microfibril;0.0126371423786529!GO:0005924;cell-substrate adherens junction;0.0127707151248202!GO:0030832;regulation of actin filament length;0.0129173079404715!GO:0051276;chromosome organization and biogenesis;0.0129222449531287!GO:0043681;protein import into mitochondrion;0.013019226185629!GO:0048660;regulation of smooth muscle cell proliferation;0.0130290273943199!GO:0030518;steroid hormone receptor signaling pathway;0.0136680696016931!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0137049561755939!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.0137294624859802!GO:0017022;myosin binding;0.0138343576181861!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0143220512679889!GO:0016860;intramolecular oxidoreductase activity;0.0144026910648384!GO:0006937;regulation of muscle contraction;0.0146702034365888!GO:0001525;angiogenesis;0.0146785955014097!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0148920975044944!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0151983961284973!GO:0051674;localization of cell;0.0152833016704295!GO:0006928;cell motility;0.0152833016704295!GO:0018196;peptidyl-asparagine modification;0.0155592868908162!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0155592868908162!GO:0031497;chromatin assembly;0.0155592868908162!GO:0030674;protein binding, bridging;0.0155678536638498!GO:0031072;heat shock protein binding;0.015791890404682!GO:0043034;costamere;0.0158569610107476!GO:0042805;actinin binding;0.0160089926285169!GO:0005975;carbohydrate metabolic process;0.0160186609754028!GO:0000278;mitotic cell cycle;0.0160186609754028!GO:0030055;cell-matrix junction;0.0160186609754028!GO:0005100;Rho GTPase activator activity;0.0160367029730544!GO:0051028;mRNA transport;0.0165312655974579!GO:0048644;muscle morphogenesis;0.0168629444082447!GO:0055008;cardiac muscle morphogensis;0.0168629444082447!GO:0016126;sterol biosynthetic process;0.0168783218505648!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0170093226132318!GO:0065007;biological regulation;0.0170547851282825!GO:0005938;cell cortex;0.0175582633498075!GO:0007265;Ras protein signal transduction;0.0178112608589869!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0181003656577007!GO:0005916;fascia adherens;0.0183981458128695!GO:0008139;nuclear localization sequence binding;0.0184717091496107!GO:0030521;androgen receptor signaling pathway;0.0186376107847748!GO:0044433;cytoplasmic vesicle part;0.0188899794170332!GO:0051087;chaperone binding;0.0192699033660079!GO:0006693;prostaglandin metabolic process;0.0193041744437207!GO:0006692;prostanoid metabolic process;0.0193041744437207!GO:0031901;early endosome membrane;0.019591037097883!GO:0009165;nucleotide biosynthetic process;0.0201502822460306!GO:0045098;type III intermediate filament;0.0207343514328808!GO:0008287;protein serine/threonine phosphatase complex;0.0207587409547955!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.020866863684873!GO:0045047;protein targeting to ER;0.020866863684873!GO:0006633;fatty acid biosynthetic process;0.0210464651776009!GO:0051101;regulation of DNA binding;0.0218808982775271!GO:0006942;regulation of striated muscle contraction;0.0226023732703267!GO:0005996;monosaccharide metabolic process;0.0226816747834884!GO:0019210;kinase inhibitor activity;0.0229236240663364!GO:0006006;glucose metabolic process;0.0229638889504096!GO:0006607;NLS-bearing substrate import into nucleus;0.0229662933736602!GO:0000059;protein import into nucleus, docking;0.0231007229649286!GO:0044255;cellular lipid metabolic process;0.023471137989629!GO:0030218;erythrocyte differentiation;0.0235754030604094!GO:0030334;regulation of cell migration;0.0239157428186124!GO:0005083;small GTPase regulator activity;0.0241100035982354!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0242944785067394!GO:0030176;integral to endoplasmic reticulum membrane;0.0252711688901554!GO:0015631;tubulin binding;0.0253580463734741!GO:0008283;cell proliferation;0.0253987871924341!GO:0051146;striated muscle cell differentiation;0.0253987871924341!GO:0045936;negative regulation of phosphate metabolic process;0.0254283795966427!GO:0030119;AP-type membrane coat adaptor complex;0.0254283795966427!GO:0009081;branched chain family amino acid metabolic process;0.0254283795966427!GO:0046474;glycerophospholipid biosynthetic process;0.0256393952341773!GO:0019079;viral genome replication;0.0258319718557687!GO:0009966;regulation of signal transduction;0.0260476567369752!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0262377268339292!GO:0005813;centrosome;0.0262941286303116!GO:0051098;regulation of binding;0.0264759508784337!GO:0045045;secretory pathway;0.0267185475819685!GO:0015036;disulfide oxidoreductase activity;0.0274905298643799!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.0275587213253214!GO:0006508;proteolysis;0.0275628219930185!GO:0030049;muscle filament sliding;0.0281386726750942!GO:0033275;actin-myosin filament sliding;0.0281386726750942!GO:0050681;androgen receptor binding;0.0287884680626545!GO:0008147;structural constituent of bone;0.0299587679440908!GO:0055001;muscle cell development;0.0299587679440908!GO:0030239;myofibril assembly;0.0299587679440908!GO:0055002;striated muscle cell development;0.0299587679440908!GO:0007266;Rho protein signal transduction;0.0299587679440908!GO:0043022;ribosome binding;0.0308109678332956!GO:0014866;skeletal myofibril assembly;0.030920180984899!GO:0005862;muscle thin filament tropomyosin;0.0312809327895593!GO:0007030;Golgi organization and biogenesis;0.0312809327895593!GO:0007507;heart development;0.0317753045424106!GO:0005584;collagen type I;0.0319432241566183!GO:0006595;polyamine metabolic process;0.0321132607056507!GO:0046426;negative regulation of JAK-STAT cascade;0.0326583608766301!GO:0051235;maintenance of localization;0.0327324892660553!GO:0030172;troponin C binding;0.0329360367576925!GO:0007006;mitochondrial membrane organization and biogenesis;0.0329360367576925!GO:0035035;histone acetyltransferase binding;0.0339630280988613!GO:0030131;clathrin adaptor complex;0.0344669188646901!GO:0030198;extracellular matrix organization and biogenesis;0.0347947683261514!GO:0004111;creatine kinase activity;0.0355295802250291!GO:0030031;cell projection biogenesis;0.0356912764099804!GO:0030041;actin filament polymerization;0.0358121692799955!GO:0005200;structural constituent of cytoskeleton;0.0360792193773091!GO:0006096;glycolysis;0.0365536234750933!GO:0005684;U2-dependent spliceosome;0.0367241326846605!GO:0005637;nuclear inner membrane;0.03673903510979!GO:0004448;isocitrate dehydrogenase activity;0.0372169469186197!GO:0030522;intracellular receptor-mediated signaling pathway;0.037622719344186!GO:0006260;DNA replication;0.0383766314556449!GO:0005925;focal adhesion;0.0387577864789903!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0399958499897471!GO:0019058;viral infectious cycle;0.0401812333774625!GO:0031625;ubiquitin protein ligase binding;0.0403704015452254!GO:0003690;double-stranded DNA binding;0.0405493336762568!GO:0016584;nucleosome positioning;0.0408664325922124!GO:0031124;mRNA 3'-end processing;0.0413050291371465!GO:0005832;chaperonin-containing T-complex;0.041722338745371!GO:0006839;mitochondrial transport;0.042468800174979!GO:0048487;beta-tubulin binding;0.0426698649294469!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0432283917148294!GO:0019208;phosphatase regulator activity;0.0435107253049119!GO:0000082;G1/S transition of mitotic cell cycle;0.0436682462155885!GO:0003676;nucleic acid binding;0.0438065977189791!GO:0042326;negative regulation of phosphorylation;0.0438529832083146!GO:0005518;collagen binding;0.0442467107296931!GO:0016272;prefoldin complex;0.0456654906112724!GO:0046394;carboxylic acid biosynthetic process;0.0460414232027609!GO:0016053;organic acid biosynthetic process;0.0460414232027609!GO:0007028;cytoplasm organization and biogenesis;0.0460414232027609!GO:0048251;elastic fiber assembly;0.0467402195439235!GO:0005521;lamin binding;0.047069968520062!GO:0007169;transmembrane receptor protein tyrosine kinase signaling pathway;0.0475158925624635!GO:0006281;DNA repair;0.04772868658875!GO:0045663;positive regulation of myoblast differentiation;0.0480663641699097!GO:0005694;chromosome;0.0486073870655989!GO:0032780;negative regulation of ATPase activity;0.0487859013262186!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0490676582555919!GO:0031543;peptidyl-proline dioxygenase activity;0.0491614663303005!GO:0008047;enzyme activator activity;0.0497825773145418
+|sample_id=10057
+|sample_note=
+|sample_sex=male
+|sample_species=Human (Homo sapiens)
+|sample_strain=
+|sample_tissue=umbilical cord
+|top_motifs=TBP:4.41655543587;SRF:3.76166410562;MEF2{A,B,C,D}:3.51728702547;NR5A1,2:2.99200778611;RXRA_VDR{dimer}:2.43995913892;TFAP4:2.43584921547;NFE2L1:2.27627030121;MAFB:2.22437039523;GATA4:2.18393483382;ESR1:2.12886942792;SPZ1:2.12473612535;SMAD1..7,9:2.12266663009;GCM1,2:2.04228641492;GLI1..3:1.97296605673;NR1H4:1.91414844576;NR3C1:1.91060036648;NR6A1:1.8872516527;HOX{A4,D4}:1.85020135538;ZNF423:1.8266556914;TFCP2:1.80204616159;TFAP2{A,C}:1.78137872057;IKZF1:1.7067461301;TEAD1:1.67316672777;MYBL2:1.58990863455;KLF4:1.58767864337;GATA6:1.46207806635;FOXL1:1.45488020301;NKX3-1:1.43407152884;XBP1:1.42852839902;AR:1.42298595322;TBX4,5:1.38802814777;TAL1_TCF{3,4,12}:1.34276243999;ZNF238:1.30523928928;ZNF384:1.30390932958;ESRRA:1.27198155422;RORA:1.2646221095;TOPORS:1.24128238353;SOX5:1.18367056696;FOXA2:1.15863833634;SNAI1..3:1.15664362104;GTF2A1,2:1.13077640295;FOXM1:1.1228767854;PRDM1:1.11923651628;HAND1,2:1.07039253853;FOX{I1,J2}:1.06751125944;IKZF2:1.05545137533;TEF:1.05491058248;NKX3-2:0.997695381277;NFATC1..3:0.963800977467;LHX3,4:0.945877062846;UFEwm:0.935476735468;PATZ1:0.911759107123;MZF1:0.901124897733;MAZ:0.878657903973;HIC1:0.874839319568;ZEB1:0.869135959415;GTF2I:0.85910067734;MTE{core}:0.818377664437;PAX5:0.804767291335;ZIC1..3:0.804633325176;HOXA9_MEIS1:0.800020643835;TLX1..3_NFIC{dimer}:0.799529173534;FOXO1,3,4:0.771298678072;ZNF148:0.746064380468;MED-1{core}:0.728189114419;HOX{A5,B5}:0.713872602235;FOX{D1,D2}:0.70323352897;RREB1:0.69516820886;RBPJ:0.630892752568;LMO2:0.63022323371;T:0.602994772798;MYOD1:0.588696258791;ATF6:0.55158946569;NANOG{mouse}:0.537391098322;FOXD3:0.532114666051;TP53:0.52515536712;HMGA1,2:0.50181674522;NHLH1,2:0.500456522883;NKX2-1,4:0.496239940261;TGIF1:0.48913594415;PPARG:0.485303077237;ATF2:0.460882158714;CDC5L:0.45303700166;EBF1:0.447460404137;GFI1B:0.438574320375;MYFfamily:0.430195297604;SP1:0.415850795638;MTF1:0.406593935474;VSX1,2:0.39627490105;SOX17:0.395538197216;HNF1A:0.378433724663;NKX2-3_NKX2-5:0.37533238836;EVI1:0.354581037891;FOXP3:0.342461575822;YY1:0.334202134308;STAT2,4,6:0.331407548768;REST:0.327164345147;HMX1:0.286983647694;TLX2:0.272339137806;GZF1:0.263564831164;AIRE:0.25075011442;EP300:0.244018192042;NANOG:0.239368407283;BPTF:0.228670965356;FOXP1:0.206625139964;TFAP2B:0.190692395575;ZBTB16:0.172757899914;EGR1..3:0.157983284502;HBP1_HMGB_SSRP1_UBTF:0.152106739009;CDX1,2,4:0.1181226071;ALX4:0.108500105936;BREu{core}:0.101828821786;PAX1,9:0.0858097429529;JUN:0.0211445821895;XCPE1{core}:0.0148960233535;FOSL2:-0.005081830512;HNF4A_NR2F1,2:-0.0301648816181;GFI1:-0.0395397882293;PBX1:-0.0488409526492;LEF1_TCF7_TCF7L1,2:-0.0562116088951;SOX2:-0.0577005174313;POU6F1:-0.0588742847646;HLF:-0.0683161909823;CUX2:-0.08984917529;POU5F1:-0.176412395526;HOX{A6,A7,B6,B7}:-0.189358796017;ATF4:-0.209093347778;ARID5B:-0.221728448018;SOX{8,9,10}:-0.233065077414;DBP:-0.235350362795;PAX6:-0.258022765919;RXR{A,B,G}:-0.262104597575;RFX1:-0.291939750321;ALX1:-0.302783569257;IRF7:-0.303126073001;HIF1A:-0.304170046358;PITX1..3:-0.33150370842;ETS1,2:-0.344732836855;FOS_FOS{B,L1}_JUN{B,D}:-0.355596419246;FOXQ1:-0.407959304214;NKX2-2,8:-0.411231843733;SPI1:-0.42238104508;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.422695959533;NFIX:-0.432815600562;PRRX1,2:-0.435280120343;FOX{F1,F2,J1}:-0.461434137682;ADNP_IRX_SIX_ZHX:-0.475006902528;NKX6-1,2:-0.4990160481;HES1:-0.500151165744;HSF1,2:-0.503157932754;TFDP1:-0.511189768304;ZFP161:-0.513642426102;NFE2:-0.515912900516;PAX2:-0.527554598163;EN1,2:-0.530060619225;SPIB:-0.547204276;POU3F1..4:-0.553450660743;NFE2L2:-0.555567811805;IRF1,2:-0.560393480039;RUNX1..3:-0.564944727762;BACH2:-0.590435338566;NFKB1_REL_RELA:-0.607821399683;PAX4:-0.641698259148;E2F1..5:-0.642705415499;NFY{A,B,C}:-0.671172461433;FOXN1:-0.689452066137;CEBPA,B_DDIT3:-0.759487148804;ATF5_CREB3:-0.793186001781;ZBTB6:-0.80809790431;AHR_ARNT_ARNT2:-0.828837840236;CREB1:-0.884910379145;POU2F1..3:-0.889854815077;RFX2..5_RFXANK_RFXAP:-0.906720768842;ONECUT1,2:-0.923723003402;POU1F1:-0.927223502968;SREBF1,2:-0.946853501306;DMAP1_NCOR{1,2}_SMARC:-0.947751397355;ZNF143:-0.997639698995;NFIL3:-0.999577248001;STAT1,3:-1.05247657148;bHLH_family:-1.09587830014;PDX1:-1.10440764508;NRF1:-1.11430209841;ELF1,2,4:-1.23169290126;MYB:-1.2420886172;CRX:-1.27060556326;OCT4_SOX2{dimer}:-1.30091331063;STAT5{A,B}:-1.65136653854;PAX3,7:-2.06458251531;PAX8:-2.1309293705;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-2.59122467763;ELK1,4_GABP{A,B1}:-2.80999645724
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10057-101H3;search_select_hide=table117:FF:10057-101H3
 }}

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FF:10057-101H3: Difference between revisions

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Latest revision as of 12:18, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0