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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005976
|DRA_sample_Accession=CAGE@SAMD00005976
|accession_numbers=CAGE;DRX008177;DRR009049;DRZ000474;DRZ001859
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005976
|accession_numbers=CAGE;DRX008177;DRR009049;DRZ000474;DRZ001859;DRZ011824;DRZ013209
|accession_numbers_RNASeq=sRNA-Seq;DRX037136;DRR041502;DRZ007144
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000791,CL:0000084,CL:0000789,CL:0002419,CL:0000624
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000791,CL:0000084,CL:0000789,CL:0002419,CL:0000624
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|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252b%2520T%2520Cells%252c%2520donor2.CNhs11955.11306-117C1.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252b%2520T%2520Cells%252c%2520donor2.CNhs11955.11306-117C1.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252b%2520T%2520Cells%252c%2520donor2.CNhs11955.11306-117C1.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252b%2520T%2520Cells%252c%2520donor2.CNhs11955.11306-117C1.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252b%2520T%2520Cells%252c%2520donor2.CNhs11955.11306-117C1.hg38.nobarcode.ctss.bed.gz
|id=FF:11306-117C1
|id=FF:11306-117C1
|is_a=EFO:0002091;;FF:0000031;;FF:0000210
|is_a=EFO:0002091;;FF:0000031;;FF:0000210
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|library_id=CNhs11955
|library_id=CNhs11955
|library_id_phase_based=2:CNhs11955
|library_id_phase_based=2:CNhs11955
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11306
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10009.CTTGTA.11306
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11306
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10009.CTTGTA.11306
|name=CD4+ T Cells, donor2
|name=CD4+ T Cells, donor2
|namespace=FANTOM5
|namespace=FANTOM5
Line 54: Line 67:
|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=SRhi10009,,,
|profile_srnaseq=SRhi10009,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 68: Line 82:
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|sample_category=primary cells
Line 91: Line 106:
|top_motifs=PITX1..3:3.76748161535;FOX{D1,D2}:3.33747208357;PAX3,7:3.2424757632;BPTF:3.22719722364;CREB1:3.18441851256;ZBTB16:3.13075750659;FOXP1:3.10521665664;ATF4:3.00714692119;ATF5_CREB3:2.70734267244;RORA:2.69300340595;NKX6-1,2:2.58630877255;RFX2..5_RFXANK_RFXAP:2.57756131989;FOXO1,3,4:2.49023030245;RUNX1..3:2.44663582031;TOPORS:2.43664595371;CDX1,2,4:2.32625295977;FOXN1:2.29137633295;FOX{F1,F2,J1}:2.25432862372;IKZF2:2.10632344122;NFKB1_REL_RELA:1.92487469291;RFX1:1.74992337337;ELF1,2,4:1.73310744319;PAX2:1.69501502912;DMAP1_NCOR{1,2}_SMARC:1.68951782979;PAX4:1.64257183886;ETS1,2:1.45748122149;NKX2-1,4:1.43736876876;HMX1:1.43491453099;AIRE:1.41269380195;BREu{core}:1.40965051082;LEF1_TCF7_TCF7L1,2:1.31506612219;JUN:1.25791550514;SPI1:1.25710328027;T:1.17952281579;ATF2:1.10514154122;ATF6:1.09252165512;TGIF1:1.07033419591;TBX4,5:1.06973480771;FOX{I1,J2}:1.06720152498;ZNF384:0.969292505206;SPIB:0.85217449414;NKX3-1:0.84541729239;HBP1_HMGB_SSRP1_UBTF:0.803152569042;IRF1,2:0.76909582363;RREB1:0.724842329354;NFIL3:0.701270802505;HIF1A:0.699015852697;FOXD3:0.683830451432;HOXA9_MEIS1:0.682531920314;EGR1..3:0.654744215404;PAX6:0.586136129616;GATA6:0.522271142375;TLX2:0.472733692273;EP300:0.449994385756;ZEB1:0.44341794563;POU3F1..4:0.40754592559;NFATC1..3:0.406258156669;SMAD1..7,9:0.39927223307;MAFB:0.380662011939;HOX{A6,A7,B6,B7}:0.365938600324;NFE2L1:0.342138715566;NANOG{mouse}:0.322244490093;SOX5:0.294444868317;SREBF1,2:0.292768936843;HMGA1,2:0.267147179515;PDX1:0.262980205445;MYB:0.237497274314;SNAI1..3:0.215619599162;NFIX:0.203518097929;CUX2:0.132869625896;FOSL2:0.116010450664;SPZ1:0.113669351639;POU2F1..3:0.0873189688221;MYFfamily:0.0831515126348;IRF7:0.0567673224198;FOXQ1:0.049214840308;FOXP3:0.0254381274744;AHR_ARNT_ARNT2:0.0202902299843;FOS_FOS{B,L1}_JUN{B,D}:0.019953161362;SOX2:-0.0320005634328;CRX:-0.0486080603181;NR5A1,2:-0.0573322810873;EVI1:-0.0826529481661;ELK1,4_GABP{A,B1}:-0.0879207672844;STAT5{A,B}:-0.0931217976956;LMO2:-0.100384521994;DBP:-0.144112284995;STAT2,4,6:-0.161253660771;PBX1:-0.16126644093;BACH2:-0.16735391253;HES1:-0.176353228974;FOXM1:-0.188569451716;MED-1{core}:-0.213156437969;PPARG:-0.223750369705;MTE{core}:-0.307526321299;E2F1..5:-0.314024215206;FOXL1:-0.319218658348;NKX2-2,8:-0.323673782577;POU1F1:-0.333322434598;YY1:-0.372167976173;NFE2:-0.384597227705;GCM1,2:-0.395740234754;CEBPA,B_DDIT3:-0.420374497119;UFEwm:-0.42264343335;HNF4A_NR2F1,2:-0.430233915604;GATA4:-0.453476329176;NR6A1:-0.464103799217;AR:-0.484960400864;OCT4_SOX2{dimer}:-0.491470328321;NRF1:-0.5184021076;SRF:-0.521863214937;MZF1:-0.532630484064;NFY{A,B,C}:-0.540230233864;ZFP161:-0.543421957915;TFDP1:-0.550608664231;bHLH_family:-0.604921833602;ALX4:-0.61245101332;MYOD1:-0.617923604365;ZBTB6:-0.663890429885;RXRA_VDR{dimer}:-0.670084447274;PAX5:-0.701738627638;HNF1A:-0.711744951135;GLI1..3:-0.780541022607;HLF:-0.812062941653;NFE2L2:-0.833463591013;STAT1,3:-0.834298324604;PATZ1:-0.863167576922;NHLH1,2:-0.866753990465;HAND1,2:-0.872448267738;TAL1_TCF{3,4,12}:-0.881141449221;SOX{8,9,10}:-0.917831815418;FOXA2:-0.948743783117;PRRX1,2:-0.964028826726;TFAP2B:-0.979418850726;POU6F1:-0.999442750987;NANOG:-1.00612535314;ONECUT1,2:-1.00833854872;MTF1:-1.00889825486;REST:-1.02072849633;RBPJ:-1.0441438962;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.05263970815;ZNF423:-1.08199280579;MEF2{A,B,C,D}:-1.09286388893;PAX8:-1.0933435722;ARID5B:-1.16489957486;TFAP4:-1.18313586941;ZNF143:-1.19897367129;ZIC1..3:-1.21661974399;LHX3,4:-1.26182896437;TEF:-1.27174576936;TFAP2{A,C}:-1.28665105149;MAZ:-1.30138020792;ALX1:-1.30175200996;SOX17:-1.32109216943;SP1:-1.34894884126;MYBL2:-1.3542980229;TBP:-1.36377240612;XBP1:-1.37738444422;GFI1B:-1.40746578734;GFI1:-1.480651115;CDC5L:-1.48829779966;HIC1:-1.51530876627;POU5F1:-1.57819188516;HOX{A5,B5}:-1.58246540508;NR1H4:-1.60630866474;XCPE1{core}:-1.60997815662;HSF1,2:-1.64141519622;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.65002444781;TP53:-1.65969122936;PRDM1:-1.66327058219;ZNF238:-1.67550988772;TFCP2:-1.68470669872;NKX2-3_NKX2-5:-1.7036846249;ADNP_IRX_SIX_ZHX:-1.70775823548;TEAD1:-1.72299979456;TLX1..3_NFIC{dimer}:-1.74099136856;KLF4:-1.78612101907;GTF2A1,2:-1.82598543425;GTF2I:-1.86496625654;ZNF148:-1.94069867522;NKX3-2:-1.95091448313;VSX1,2:-1.97673980089;HOX{A4,D4}:-2.00383992988;EN1,2:-2.09727547897;RXR{A,B,G}:-2.15806245002;ESR1:-2.17892488408;ESRRA:-2.18888128933;GZF1:-2.20938519516;EBF1:-2.28316104604;IKZF1:-2.58281045826;NR3C1:-3.03722478138;PAX1,9:-3.0730478509
|top_motifs=PITX1..3:3.76748161535;FOX{D1,D2}:3.33747208357;PAX3,7:3.2424757632;BPTF:3.22719722364;CREB1:3.18441851256;ZBTB16:3.13075750659;FOXP1:3.10521665664;ATF4:3.00714692119;ATF5_CREB3:2.70734267244;RORA:2.69300340595;NKX6-1,2:2.58630877255;RFX2..5_RFXANK_RFXAP:2.57756131989;FOXO1,3,4:2.49023030245;RUNX1..3:2.44663582031;TOPORS:2.43664595371;CDX1,2,4:2.32625295977;FOXN1:2.29137633295;FOX{F1,F2,J1}:2.25432862372;IKZF2:2.10632344122;NFKB1_REL_RELA:1.92487469291;RFX1:1.74992337337;ELF1,2,4:1.73310744319;PAX2:1.69501502912;DMAP1_NCOR{1,2}_SMARC:1.68951782979;PAX4:1.64257183886;ETS1,2:1.45748122149;NKX2-1,4:1.43736876876;HMX1:1.43491453099;AIRE:1.41269380195;BREu{core}:1.40965051082;LEF1_TCF7_TCF7L1,2:1.31506612219;JUN:1.25791550514;SPI1:1.25710328027;T:1.17952281579;ATF2:1.10514154122;ATF6:1.09252165512;TGIF1:1.07033419591;TBX4,5:1.06973480771;FOX{I1,J2}:1.06720152498;ZNF384:0.969292505206;SPIB:0.85217449414;NKX3-1:0.84541729239;HBP1_HMGB_SSRP1_UBTF:0.803152569042;IRF1,2:0.76909582363;RREB1:0.724842329354;NFIL3:0.701270802505;HIF1A:0.699015852697;FOXD3:0.683830451432;HOXA9_MEIS1:0.682531920314;EGR1..3:0.654744215404;PAX6:0.586136129616;GATA6:0.522271142375;TLX2:0.472733692273;EP300:0.449994385756;ZEB1:0.44341794563;POU3F1..4:0.40754592559;NFATC1..3:0.406258156669;SMAD1..7,9:0.39927223307;MAFB:0.380662011939;HOX{A6,A7,B6,B7}:0.365938600324;NFE2L1:0.342138715566;NANOG{mouse}:0.322244490093;SOX5:0.294444868317;SREBF1,2:0.292768936843;HMGA1,2:0.267147179515;PDX1:0.262980205445;MYB:0.237497274314;SNAI1..3:0.215619599162;NFIX:0.203518097929;CUX2:0.132869625896;FOSL2:0.116010450664;SPZ1:0.113669351639;POU2F1..3:0.0873189688221;MYFfamily:0.0831515126348;IRF7:0.0567673224198;FOXQ1:0.049214840308;FOXP3:0.0254381274744;AHR_ARNT_ARNT2:0.0202902299843;FOS_FOS{B,L1}_JUN{B,D}:0.019953161362;SOX2:-0.0320005634328;CRX:-0.0486080603181;NR5A1,2:-0.0573322810873;EVI1:-0.0826529481661;ELK1,4_GABP{A,B1}:-0.0879207672844;STAT5{A,B}:-0.0931217976956;LMO2:-0.100384521994;DBP:-0.144112284995;STAT2,4,6:-0.161253660771;PBX1:-0.16126644093;BACH2:-0.16735391253;HES1:-0.176353228974;FOXM1:-0.188569451716;MED-1{core}:-0.213156437969;PPARG:-0.223750369705;MTE{core}:-0.307526321299;E2F1..5:-0.314024215206;FOXL1:-0.319218658348;NKX2-2,8:-0.323673782577;POU1F1:-0.333322434598;YY1:-0.372167976173;NFE2:-0.384597227705;GCM1,2:-0.395740234754;CEBPA,B_DDIT3:-0.420374497119;UFEwm:-0.42264343335;HNF4A_NR2F1,2:-0.430233915604;GATA4:-0.453476329176;NR6A1:-0.464103799217;AR:-0.484960400864;OCT4_SOX2{dimer}:-0.491470328321;NRF1:-0.5184021076;SRF:-0.521863214937;MZF1:-0.532630484064;NFY{A,B,C}:-0.540230233864;ZFP161:-0.543421957915;TFDP1:-0.550608664231;bHLH_family:-0.604921833602;ALX4:-0.61245101332;MYOD1:-0.617923604365;ZBTB6:-0.663890429885;RXRA_VDR{dimer}:-0.670084447274;PAX5:-0.701738627638;HNF1A:-0.711744951135;GLI1..3:-0.780541022607;HLF:-0.812062941653;NFE2L2:-0.833463591013;STAT1,3:-0.834298324604;PATZ1:-0.863167576922;NHLH1,2:-0.866753990465;HAND1,2:-0.872448267738;TAL1_TCF{3,4,12}:-0.881141449221;SOX{8,9,10}:-0.917831815418;FOXA2:-0.948743783117;PRRX1,2:-0.964028826726;TFAP2B:-0.979418850726;POU6F1:-0.999442750987;NANOG:-1.00612535314;ONECUT1,2:-1.00833854872;MTF1:-1.00889825486;REST:-1.02072849633;RBPJ:-1.0441438962;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.05263970815;ZNF423:-1.08199280579;MEF2{A,B,C,D}:-1.09286388893;PAX8:-1.0933435722;ARID5B:-1.16489957486;TFAP4:-1.18313586941;ZNF143:-1.19897367129;ZIC1..3:-1.21661974399;LHX3,4:-1.26182896437;TEF:-1.27174576936;TFAP2{A,C}:-1.28665105149;MAZ:-1.30138020792;ALX1:-1.30175200996;SOX17:-1.32109216943;SP1:-1.34894884126;MYBL2:-1.3542980229;TBP:-1.36377240612;XBP1:-1.37738444422;GFI1B:-1.40746578734;GFI1:-1.480651115;CDC5L:-1.48829779966;HIC1:-1.51530876627;POU5F1:-1.57819188516;HOX{A5,B5}:-1.58246540508;NR1H4:-1.60630866474;XCPE1{core}:-1.60997815662;HSF1,2:-1.64141519622;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.65002444781;TP53:-1.65969122936;PRDM1:-1.66327058219;ZNF238:-1.67550988772;TFCP2:-1.68470669872;NKX2-3_NKX2-5:-1.7036846249;ADNP_IRX_SIX_ZHX:-1.70775823548;TEAD1:-1.72299979456;TLX1..3_NFIC{dimer}:-1.74099136856;KLF4:-1.78612101907;GTF2A1,2:-1.82598543425;GTF2I:-1.86496625654;ZNF148:-1.94069867522;NKX3-2:-1.95091448313;VSX1,2:-1.97673980089;HOX{A4,D4}:-2.00383992988;EN1,2:-2.09727547897;RXR{A,B,G}:-2.15806245002;ESR1:-2.17892488408;ESRRA:-2.18888128933;GZF1:-2.20938519516;EBF1:-2.28316104604;IKZF1:-2.58281045826;NR3C1:-3.03722478138;PAX1,9:-3.0730478509
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11306-117C1;search_select_hide=table117:FF:11306-117C1
}}
}}

Latest revision as of 16:32, 3 June 2020

Name:CD4+ T Cells, donor2
Species:Human (Homo sapiens)
Library ID:CNhs11955
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stage57 years old adult
sexmale
age57
cell typet cell, CD4+
cell lineNA
company3HBiomedical
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberCD4T726
catalog number3H100-23-10
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005976
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11955 CAGE DRX008177 DRR009049
Accession ID Hg19

Library idBAMCTSS
CNhs11955 DRZ000474 DRZ001859
Accession ID Hg38

Library idBAMCTSS
CNhs11955 DRZ011824 DRZ013209
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005976
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10009.CTTGTA sRNA-Seq DRX037136 DRR041502
Accession ID Hg19

Library idBAMCTSS
SRhi10009.CTTGTA DRZ007144


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0.338
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0635
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.258
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.907
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.786
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.144
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.657
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.574
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.796
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.571
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0.144
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0.693
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.169
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.144
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.868
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0.574
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190.786
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.864
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.339
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140.617
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0.338
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.217
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.457
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.801
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.72
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.693
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0725
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.574
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.41
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.772
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.569
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.785
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.657
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0.144
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.876
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0.657
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340.41
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0.144
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11955

Jaspar motifP-value
MA0002.20.00301
MA0003.10.257
MA0004.10.915
MA0006.10.151
MA0007.10.857
MA0009.10.0719
MA0014.10.734
MA0017.10.185
MA0018.21.92494e-7
MA0019.10.442
MA0024.10.678
MA0025.10.312
MA0027.10.937
MA0028.10.335
MA0029.10.245
MA0030.10.0789
MA0031.11.72024e-4
MA0035.20.768
MA0038.10.0135
MA0039.20.225
MA0040.10.536
MA0041.10.229
MA0042.10.552
MA0043.10.0341
MA0046.10.0501
MA0047.20.646
MA0048.10.748
MA0050.10.00179
MA0051.10.219
MA0052.10.0342
MA0055.10.755
MA0057.10.186
MA0058.10.801
MA0059.10.894
MA0060.10.00533
MA0061.15.48624e-9
MA0062.24.19552e-5
MA0065.20.921
MA0066.10.929
MA0067.10.0232
MA0068.10.987
MA0069.10.583
MA0070.10.405
MA0071.10.969
MA0072.10.322
MA0073.10.805
MA0074.10.971
MA0076.10.2
MA0077.10.0643
MA0078.10.964
MA0079.20.544
MA0080.26.48188e-7
MA0081.10.0655
MA0083.10.175
MA0084.10.594
MA0087.10.451
MA0088.10.427
MA0090.17.90209e-4
MA0091.10.253
MA0092.10.919
MA0093.10.762
MA0099.20.0947
MA0100.10.864
MA0101.11.16697e-5
MA0102.20.815
MA0103.10.459
MA0104.20.42
MA0105.11.6208e-7
MA0106.10.0669
MA0107.14.26221e-5
MA0108.22.47207e-5
MA0111.10.304
MA0112.20.433
MA0113.10.436
MA0114.10.351
MA0115.10.167
MA0116.10.0507
MA0117.10.0514
MA0119.10.903
MA0122.10.665
MA0124.10.16
MA0125.10.0992
MA0131.10.159
MA0135.10.102
MA0136.12.34571e-9
MA0137.20.0348
MA0138.20.0686
MA0139.10.854
MA0140.10.98
MA0141.10.232
MA0142.10.131
MA0143.10.194
MA0144.10.166
MA0145.10.0142
MA0146.10.762
MA0147.10.373
MA0148.10.936
MA0149.10.474
MA0150.10.645
MA0152.10.00542
MA0153.10.132
MA0154.10.805
MA0155.10.265
MA0156.11.24132e-5
MA0157.16.83819e-4
MA0159.10.934
MA0160.10.498
MA0162.10.241
MA0163.10.00518
MA0164.10.541
MA0258.10.686
MA0259.10.429



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11955

Novel motifP-value
10.638
100.00777
1000.456
1010.114
1020.784
1030.294
1040.899
1050.852
1060.22
1070.143
1080.966
1090.795
110.487
1100.596
1110.291
1120.897
1130.252
1140.619
1150.778
1160.473
1170.00574
1180.386
1190.812
120.703
1200.432
1210.798
1220.604
1237.16985e-8
1240.769
1250.911
1260.936
1270.254
1280.998
1290.433
130.562
1300.165
1310.796
1320.342
1330.673
1340.808
1350.271
1360.936
1370.0371
1380.476
1390.0893
140.595
1400.323
1410.928
1420.333
1430.147
1440.845
1450.907
1460.342
1470.0608
1480.216
1490.235
150.339
1500.96
1510.49
1520.524
1530.386
1540.0708
1550.112
1560.749
1570.757
1580.00869
1590.895
160.307
1600.237
1610.468
1620.0942
1630.874
1640.0312
1650.936
1660.404
1670.0744
1680.412
1690.28
170.66
180.59
190.0802
20.182
200.144
210.59
220.193
230.764
240.387
250.196
260.592
270.6
280.394
290.0568
30.337
300.0178
310.523
320.0454
330.461
340.203
350.137
360.141
370.453
380.832
390.54
40.732
400.651
410.453
420.211
430.528
440.861
450.109
460.651
470.443
480.746
490.0929
50.731
500.459
510.931
520.79
530.19
540.885
550.959
560.825
570.583
580.196
590.28
60.663
600.552
610.226
620.249
630.908
640.749
650.644
660.17
670.567
680.811
690.684
70.772
700.0918
710.169
720.586
730.928
740.758
750.0215
760.0368
770.00714
780.582
790.598
80.588
800.244
810.741
820.449
830.901
840.0637
850.891
860.0808
870.449
880.897
890.00465
90.445
900.262
910.467
920.616
930.377
940.447
950.278
960.856
970.279
980.274
991.05599e-4



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11955


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000791 (mature alpha-beta T cell)
0000084 (T cell)
0000789 (alpha-beta T cell)
0002419 (mature T cell)
0000624 (CD4-positive, alpha-beta T cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000031 (CD4-positive T cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)
CL:0000790 (immature alpha-beta T cell)

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