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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005856
|DRA_sample_Accession=CAGE@SAMD00005856
|accession_numbers=CAGE;DRX008548;DRR009420;DRZ000845;DRZ002230
|accession_numbers=CAGE;DRX008548;DRR009420;DRZ000845;DRZ002230;DRZ012195;DRZ013580
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004765,UBERON:0010317,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004765,UBERON:0010317,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034,CL:0002092,CL:0002540
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034,CL:0002092,CL:0002540
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|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520bone%2520marrow%252c%2520donor1.CNhs12366.11750-123G4.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520bone%2520marrow%252c%2520donor1.CNhs12366.11750-123G4.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520bone%2520marrow%252c%2520donor1.CNhs12366.11750-123G4.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520bone%2520marrow%252c%2520donor1.CNhs12366.11750-123G4.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520bone%2520marrow%252c%2520donor1.CNhs12366.11750-123G4.hg38.nobarcode.ctss.bed.gz
|id=FF:11750-123G4
|id=FF:11750-123G4
|is_a=EFO:0002091;;FF:0000269
|is_a=EFO:0002091;;FF:0000269
Line 47: Line 52:
|library_id=CNhs12366
|library_id=CNhs12366
|library_id_phase_based=2:CNhs12366
|library_id_phase_based=2:CNhs12366
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11750
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11750
|name=mesenchymal precursor cell - bone marrow, donor1
|name=mesenchymal precursor cell - bone marrow, donor1
|namespace=FANTOM5
|namespace=FANTOM5
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|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 92: Line 101:
|top_motifs=MAFB:1.9536552987;NKX2-1,4:1.70991172254;ATF6:1.67771571893;ZNF238:1.65777672911;NFATC1..3:1.61712026759;EN1,2:1.32292992465;ALX4:1.18233910739;RXR{A,B,G}:1.1673662094;NFE2L1:1.10483595622;GZF1:1.0582500027;SRF:1.04897914085;HOX{A4,D4}:0.967561088657;UFEwm:0.959722470252;GFI1B:0.955803609271;HMX1:0.925442019215;AHR_ARNT_ARNT2:0.891139326185;FOXL1:0.890333544406;HES1:0.872889651118;NKX2-2,8:0.868175056008;NANOG{mouse}:0.834073429652;PAX4:0.821427729516;ESR1:0.792112067565;SREBF1,2:0.758888932791;CDC5L:0.742073520777;PRDM1:0.731475947874;XBP1:0.71015034175;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.680063474399;GATA4:0.639144248999;bHLH_family:0.633642682616;TFCP2:0.621813719865;EBF1:0.598439147608;NFE2L2:0.567244398468;JUN:0.564145395181;TEAD1:0.550664288514;HSF1,2:0.544268412726;PAX1,9:0.534820525275;FOS_FOS{B,L1}_JUN{B,D}:0.525628704964;TAL1_TCF{3,4,12}:0.520980322331;FOSL2:0.50999539439;STAT2,4,6:0.497442458843;TLX1..3_NFIC{dimer}:0.496011148749;CREB1:0.479621717877;BACH2:0.477130338898;AIRE:0.468228090655;NKX3-2:0.468169465024;NR3C1:0.453816667889;HAND1,2:0.45334840843;TP53:0.451474496467;NR6A1:0.450696167106;ATF5_CREB3:0.449968369437;HLF:0.44669805007;MYBL2:0.436133732921;MEF2{A,B,C,D}:0.423475728196;NKX6-1,2:0.415384323071;MTE{core}:0.412396068971;GTF2I:0.396153108498;GLI1..3:0.386312358983;HOX{A5,B5}:0.377982725069;BPTF:0.37677381275;EVI1:0.373347387841;NFIX:0.353869376863;PATZ1:0.346240090921;RUNX1..3:0.343084298521;ESRRA:0.342920100546;GTF2A1,2:0.34076501966;TBX4,5:0.336757789903;NHLH1,2:0.336448162481;KLF4:0.325844718229;TEF:0.325816591166;TBP:0.320674237993;NFE2:0.319939976072;ZBTB6:0.315669766816;NKX3-1:0.310985624952;RFX1:0.310583219399;RFX2..5_RFXANK_RFXAP:0.299385347439;MZF1:0.284416683944;RXRA_VDR{dimer}:0.272082889124;LHX3,4:0.271516165984;HIF1A:0.262296605282;SMAD1..7,9:0.254618606348;ZIC1..3:0.236381300366;POU3F1..4:0.236322645071;EP300:0.230631863727;ATF4:0.22144102063;DMAP1_NCOR{1,2}_SMARC:0.212732840573;STAT1,3:0.202159318145;IKZF1:0.201724428192;IRF1,2:0.195784557633;FOX{I1,J2}:0.188620015898;HBP1_HMGB_SSRP1_UBTF:0.15901632668;PAX5:0.157395088146;ZBTB16:0.137079260041;TFAP2{A,C}:0.127067474379;FOXO1,3,4:0.109982259831;HIC1:0.101844397464;FOXP3:0.0931657341444;PAX2:0.0870991068551;MTF1:0.0859094640329;YY1:0.083941991483;EGR1..3:0.0784901710472;RREB1:0.0716388956366;MYFfamily:0.0676697013723;TFAP2B:0.0672328151525;DBP:0.0518052599688;GCM1,2:0.0387860383236;ZNF423:0.0350328352253;MAZ:0.0202597864499;HNF1A:0.0111545052817;PAX3,7:0.00896245811587;NR1H4:0.00379163665533;SOX17:-0.0177428222752;TLX2:-0.0199349908828;NKX2-3_NKX2-5:-0.0597673120414;REST:-0.0619759157614;TFAP4:-0.0783901277152;PRRX1,2:-0.0851026767927;PAX8:-0.0917209821788;FOXD3:-0.096567320768;ARID5B:-0.111076360161;ATF2:-0.115557415267;NRF1:-0.131557725403;ZNF384:-0.139446454427;SP1:-0.159318631155;STAT5{A,B}:-0.170137929646;LEF1_TCF7_TCF7L1,2:-0.172556136062;TGIF1:-0.175903082222;ZFP161:-0.178809687705;NFKB1_REL_RELA:-0.192785411995;SPZ1:-0.194093529953;GFI1:-0.200952545599;LMO2:-0.228280590089;FOX{D1,D2}:-0.255054765482;ZNF148:-0.267154581196;ELK1,4_GABP{A,B1}:-0.268897365202;HMGA1,2:-0.280046965262;HNF4A_NR2F1,2:-0.299046523832;PPARG:-0.304653181092;AR:-0.324601581839;MED-1{core}:-0.328654614821;CEBPA,B_DDIT3:-0.348170852328;TFDP1:-0.351385731968;XCPE1{core}:-0.365987065283;ZNF143:-0.392009275699;SOX5:-0.397585492237;MYB:-0.435139472207;IRF7:-0.436953387982;POU1F1:-0.440570216037;NFIL3:-0.447615779355;NANOG:-0.451815414231;ETS1,2:-0.472175855641;PBX1:-0.479893623964;CRX:-0.487111057877;POU6F1:-0.487355459648;SOX2:-0.488677858844;RORA:-0.499069904777;SPI1:-0.502618285682;PDX1:-0.503174931227;FOXN1:-0.520485154938;ELF1,2,4:-0.524161696465;CDX1,2,4:-0.533427456033;SPIB:-0.550314660347;ADNP_IRX_SIX_ZHX:-0.571449530536;VSX1,2:-0.572280200339;MYOD1:-0.583254478062;FOXA2:-0.611570290793;NFY{A,B,C}:-0.640891512168;NR5A1,2:-0.665366217068;POU5F1:-0.700944521907;OCT4_SOX2{dimer}:-0.732741811652;PAX6:-0.747642536378;E2F1..5:-0.750413006816;IKZF2:-0.759814794157;FOXP1:-0.768625012443;FOXM1:-0.784771210434;RBPJ:-0.784898891217;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.809568969932;CUX2:-0.814182782682;HOX{A6,A7,B6,B7}:-0.832138774376;FOX{F1,F2,J1}:-0.840332601539;FOXQ1:-0.852699998122;BREu{core}:-0.85459053482;GATA6:-0.854843310856;HOXA9_MEIS1:-0.882081328872;ZEB1:-0.913440109183;SNAI1..3:-0.931646079547;ONECUT1,2:-0.970220608591;TOPORS:-1.00190055715;POU2F1..3:-1.03226340655;SOX{8,9,10}:-1.09200964673;T:-1.21102202326;ALX1:-1.35228430733;PITX1..3:-1.70566155186
|top_motifs=MAFB:1.9536552987;NKX2-1,4:1.70991172254;ATF6:1.67771571893;ZNF238:1.65777672911;NFATC1..3:1.61712026759;EN1,2:1.32292992465;ALX4:1.18233910739;RXR{A,B,G}:1.1673662094;NFE2L1:1.10483595622;GZF1:1.0582500027;SRF:1.04897914085;HOX{A4,D4}:0.967561088657;UFEwm:0.959722470252;GFI1B:0.955803609271;HMX1:0.925442019215;AHR_ARNT_ARNT2:0.891139326185;FOXL1:0.890333544406;HES1:0.872889651118;NKX2-2,8:0.868175056008;NANOG{mouse}:0.834073429652;PAX4:0.821427729516;ESR1:0.792112067565;SREBF1,2:0.758888932791;CDC5L:0.742073520777;PRDM1:0.731475947874;XBP1:0.71015034175;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.680063474399;GATA4:0.639144248999;bHLH_family:0.633642682616;TFCP2:0.621813719865;EBF1:0.598439147608;NFE2L2:0.567244398468;JUN:0.564145395181;TEAD1:0.550664288514;HSF1,2:0.544268412726;PAX1,9:0.534820525275;FOS_FOS{B,L1}_JUN{B,D}:0.525628704964;TAL1_TCF{3,4,12}:0.520980322331;FOSL2:0.50999539439;STAT2,4,6:0.497442458843;TLX1..3_NFIC{dimer}:0.496011148749;CREB1:0.479621717877;BACH2:0.477130338898;AIRE:0.468228090655;NKX3-2:0.468169465024;NR3C1:0.453816667889;HAND1,2:0.45334840843;TP53:0.451474496467;NR6A1:0.450696167106;ATF5_CREB3:0.449968369437;HLF:0.44669805007;MYBL2:0.436133732921;MEF2{A,B,C,D}:0.423475728196;NKX6-1,2:0.415384323071;MTE{core}:0.412396068971;GTF2I:0.396153108498;GLI1..3:0.386312358983;HOX{A5,B5}:0.377982725069;BPTF:0.37677381275;EVI1:0.373347387841;NFIX:0.353869376863;PATZ1:0.346240090921;RUNX1..3:0.343084298521;ESRRA:0.342920100546;GTF2A1,2:0.34076501966;TBX4,5:0.336757789903;NHLH1,2:0.336448162481;KLF4:0.325844718229;TEF:0.325816591166;TBP:0.320674237993;NFE2:0.319939976072;ZBTB6:0.315669766816;NKX3-1:0.310985624952;RFX1:0.310583219399;RFX2..5_RFXANK_RFXAP:0.299385347439;MZF1:0.284416683944;RXRA_VDR{dimer}:0.272082889124;LHX3,4:0.271516165984;HIF1A:0.262296605282;SMAD1..7,9:0.254618606348;ZIC1..3:0.236381300366;POU3F1..4:0.236322645071;EP300:0.230631863727;ATF4:0.22144102063;DMAP1_NCOR{1,2}_SMARC:0.212732840573;STAT1,3:0.202159318145;IKZF1:0.201724428192;IRF1,2:0.195784557633;FOX{I1,J2}:0.188620015898;HBP1_HMGB_SSRP1_UBTF:0.15901632668;PAX5:0.157395088146;ZBTB16:0.137079260041;TFAP2{A,C}:0.127067474379;FOXO1,3,4:0.109982259831;HIC1:0.101844397464;FOXP3:0.0931657341444;PAX2:0.0870991068551;MTF1:0.0859094640329;YY1:0.083941991483;EGR1..3:0.0784901710472;RREB1:0.0716388956366;MYFfamily:0.0676697013723;TFAP2B:0.0672328151525;DBP:0.0518052599688;GCM1,2:0.0387860383236;ZNF423:0.0350328352253;MAZ:0.0202597864499;HNF1A:0.0111545052817;PAX3,7:0.00896245811587;NR1H4:0.00379163665533;SOX17:-0.0177428222752;TLX2:-0.0199349908828;NKX2-3_NKX2-5:-0.0597673120414;REST:-0.0619759157614;TFAP4:-0.0783901277152;PRRX1,2:-0.0851026767927;PAX8:-0.0917209821788;FOXD3:-0.096567320768;ARID5B:-0.111076360161;ATF2:-0.115557415267;NRF1:-0.131557725403;ZNF384:-0.139446454427;SP1:-0.159318631155;STAT5{A,B}:-0.170137929646;LEF1_TCF7_TCF7L1,2:-0.172556136062;TGIF1:-0.175903082222;ZFP161:-0.178809687705;NFKB1_REL_RELA:-0.192785411995;SPZ1:-0.194093529953;GFI1:-0.200952545599;LMO2:-0.228280590089;FOX{D1,D2}:-0.255054765482;ZNF148:-0.267154581196;ELK1,4_GABP{A,B1}:-0.268897365202;HMGA1,2:-0.280046965262;HNF4A_NR2F1,2:-0.299046523832;PPARG:-0.304653181092;AR:-0.324601581839;MED-1{core}:-0.328654614821;CEBPA,B_DDIT3:-0.348170852328;TFDP1:-0.351385731968;XCPE1{core}:-0.365987065283;ZNF143:-0.392009275699;SOX5:-0.397585492237;MYB:-0.435139472207;IRF7:-0.436953387982;POU1F1:-0.440570216037;NFIL3:-0.447615779355;NANOG:-0.451815414231;ETS1,2:-0.472175855641;PBX1:-0.479893623964;CRX:-0.487111057877;POU6F1:-0.487355459648;SOX2:-0.488677858844;RORA:-0.499069904777;SPI1:-0.502618285682;PDX1:-0.503174931227;FOXN1:-0.520485154938;ELF1,2,4:-0.524161696465;CDX1,2,4:-0.533427456033;SPIB:-0.550314660347;ADNP_IRX_SIX_ZHX:-0.571449530536;VSX1,2:-0.572280200339;MYOD1:-0.583254478062;FOXA2:-0.611570290793;NFY{A,B,C}:-0.640891512168;NR5A1,2:-0.665366217068;POU5F1:-0.700944521907;OCT4_SOX2{dimer}:-0.732741811652;PAX6:-0.747642536378;E2F1..5:-0.750413006816;IKZF2:-0.759814794157;FOXP1:-0.768625012443;FOXM1:-0.784771210434;RBPJ:-0.784898891217;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.809568969932;CUX2:-0.814182782682;HOX{A6,A7,B6,B7}:-0.832138774376;FOX{F1,F2,J1}:-0.840332601539;FOXQ1:-0.852699998122;BREu{core}:-0.85459053482;GATA6:-0.854843310856;HOXA9_MEIS1:-0.882081328872;ZEB1:-0.913440109183;SNAI1..3:-0.931646079547;ONECUT1,2:-0.970220608591;TOPORS:-1.00190055715;POU2F1..3:-1.03226340655;SOX{8,9,10}:-1.09200964673;T:-1.21102202326;ALX1:-1.35228430733;PITX1..3:-1.70566155186
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11750-123G4;search_select_hide=table117:FF:11750-123G4
}}
}}

Latest revision as of 18:17, 4 June 2020

Name:mesenchymal precursor cell - bone marrow, donor1
Species:Human (Homo sapiens)
Library ID:CNhs12366
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuebone marrow
dev stageNA
sexNA
ageNA
cell typemesenchymal precursor cell
cell lineNA
companyNA
collaborationClaudio Schneider LNCIB
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005856
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12366 CAGE DRX008548 DRR009420
Accession ID Hg19

Library idBAMCTSS
CNhs12366 DRZ000845 DRZ002230
Accession ID Hg38

Library idBAMCTSS
CNhs12366 DRZ012195 DRZ013580
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0685
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C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12366

Jaspar motifP-value
MA0002.20.955
MA0003.10.886
MA0004.10.535
MA0006.10.378
MA0007.10.283
MA0009.10.838
MA0014.10.823
MA0017.10.436
MA0018.20.889
MA0019.10.183
MA0024.13.06237e-6
MA0025.10.00545
MA0027.10.929
MA0028.10.00471
MA0029.10.431
MA0030.10.106
MA0031.10.418
MA0035.23.14237e-4
MA0038.10.144
MA0039.20.00118
MA0040.10.378
MA0041.10.354
MA0042.10.292
MA0043.10.879
MA0046.10.501
MA0047.20.646
MA0048.10.209
MA0050.10.766
MA0051.10.91
MA0052.10.0472
MA0055.10.574
MA0057.10.712
MA0058.10.125
MA0059.10.338
MA0060.15.68289e-7
MA0061.10.513
MA0062.29.35016e-8
MA0065.20.0486
MA0066.10.613
MA0067.10.121
MA0068.10.0807
MA0069.10.171
MA0070.10.679
MA0071.10.185
MA0072.10.626
MA0073.10.883
MA0074.10.123
MA0076.17.06473e-4
MA0077.10.0282
MA0078.10.334
MA0079.20.924
MA0080.25.89137e-8
MA0081.10.0406
MA0083.12.89226e-7
MA0084.10.546
MA0087.10.91
MA0088.10.18
MA0090.12.80814e-4
MA0091.10.395
MA0092.10.824
MA0093.10.337
MA0099.29.45473e-9
MA0100.10.569
MA0101.10.194
MA0102.20.912
MA0103.12.16274e-4
MA0104.20.781
MA0105.10.913
MA0106.10.299
MA0107.10.108
MA0108.20.00565
MA0111.10.0669
MA0112.20.0574
MA0113.10.952
MA0114.10.121
MA0115.10.127
MA0116.10.391
MA0117.10.0935
MA0119.10.375
MA0122.10.796
MA0124.10.903
MA0125.10.238
MA0131.10.114
MA0135.10.732
MA0136.19.31077e-8
MA0137.20.15
MA0138.20.687
MA0139.10.862
MA0140.10.0162
MA0141.10.892
MA0142.10.32
MA0143.10.665
MA0144.10.193
MA0145.10.757
MA0146.10.0701
MA0147.10.933
MA0148.10.333
MA0149.10.677
MA0150.10.0192
MA0152.15.35396e-4
MA0153.10.632
MA0154.10.498
MA0155.10.891
MA0156.13.78046e-7
MA0157.10.572
MA0159.10.399
MA0160.10.508
MA0162.10.407
MA0163.10.785
MA0164.10.99
MA0258.10.498
MA0259.10.565



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12366

Novel motifP-value
10.85
100.397
1000.541
1010.248
1020.034
1030.376
1040.987
1050.718
1060.921
1070.52
1080.714
1090.941
110.846
1100.245
1110.565
1120.886
1130.00144
1140.379
1150.889
1160.666
1170.962
1180.47
1190.703
120.441
1200.682
1210.985
1220.0615
1231.48386e-5
1240.213
1250.862
1260.741
1270.661
1280.372
1290.603
130.793
1300.473
1310.279
1320.786
1330.499
1340.0762
1350.483
1360.641
1370.971
1380.761
1390.816
140.579
1400.0555
1410.0914
1420.505
1430.465
1440.356
1450.577
1460.617
1470.0415
1480.787
1490.237
150.939
1500.672
1510.77
1520.761
1530.282
1540.581
1550.0157
1560.207
1570.167
1580.0969
1590.102
160.067
1600.45
1610.171
1620.806
1630.73
1640.164
1650.407
1660.016
1670.978
1680.646
1690.247
170.872
180.118
190.0346
20.677
200.834
210.547
220.295
230.0845
240.33
250.291
260.531
270.758
280.354
290.233
30.846
300.347
310.807
321.34982e-6
330.468
340.268
350.824
360.033
370.0301
380.277
390.185
40.0149
400.0435
410.881
420.409
430.752
440.849
450.618
460.666
470.0601
480.0958
490.267
50.779
500.48
510.538
520.848
530.0518
540.852
550.0598
560.903
570.996
580.219
590.918
60.404
600.665
610.711
620.52
630.295
640.413
650.769
660.372
670.969
680.953
690.77
70.472
700.938
710.602
720.851
730.129
740.318
750.963
760.793
770.263
780.0474
790.0118
80.77
800.594
810.969
820.751
830.972
840.946
850.303
860.261
870.939
880.676
890.0857
90.317
900.775
910.533
920.0909
930.536
940.967
950.67
960.929
970.29
980.322
990.879



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12366


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002092 (bone marrow cell)
0002540 (mesenchymal stem cell of the bone marrow)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002371 (bone marrow)
0001474 (bone element)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004765 (skeletal element)
0010317 (germ layer / neural crest derived structure)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0002390 (hematopoietic system)
0002193 (hemolymphoid system)
0002405 (immune system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000269 (human mesenchymal precursor cell of bone marrow sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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