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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005709
|DRA_sample_Accession=CAGE@SAMD00005709
|accession_numbers=CAGE;DRX008568;DRR009440;DRZ000865;DRZ002250
|accession_numbers=CAGE;DRX008568;DRR009440;DRZ000865;DRZ002250;DRZ012215;DRZ013600
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000219,CL:0000738,CL:0000990,CL:0000255,CL:0000451,CL:0000453
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000219,CL:0000738,CL:0000990,CL:0000255,CL:0000451,CL:0000453
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|library_id=CNhs13535
|library_id=CNhs13535
|library_id_phase_based=2:CNhs13535
|library_id_phase_based=2:CNhs13535
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11901
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11901
|name=migratory langerhans cells, donor1
|name=migratory langerhans cells, donor1
|namespace=
|namespace=
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|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 97: Line 101:
|top_motifs=HSF1,2:2.66378505338;TLX2:2.04068133901;FOX{F1,F2,J1}:1.74879332592;NFKB1_REL_RELA:1.3468215698;PAX6:1.27870594624;HMX1:1.10169881176;STAT1,3:1.07380031586;FOXP3:1.03241005614;SREBF1,2:0.910338276538;FOXA2:0.853780168522;SPZ1:0.834033668722;FOXN1:0.797433172016;PDX1:0.740234603284;RXRA_VDR{dimer}:0.739962139759;ATF5_CREB3:0.731665822515;CDX1,2,4:0.7182668472;ARID5B:0.71164881984;RUNX1..3:0.702134795716;ATF2:0.698109748093;IRF1,2:0.687607153899;ESRRA:0.684380176748;ZBTB16:0.612993243127;NFIX:0.612957937399;OCT4_SOX2{dimer}:0.61191459706;AHR_ARNT_ARNT2:0.588188204661;HAND1,2:0.564933238998;NANOG{mouse}:0.563579512432;SPI1:0.490390101174;EVI1:0.486051528303;NKX6-1,2:0.461058796307;ELF1,2,4:0.457321165084;RFX2..5_RFXANK_RFXAP:0.417249112056;RORA:0.381245126748;SPIB:0.339557808932;YY1:0.338659738293;STAT5{A,B}:0.332896669443;HNF4A_NR2F1,2:0.327810557267;POU3F1..4:0.321547955746;FOX{D1,D2}:0.316263612588;PAX2:0.316082189992;CUX2:0.307104890901;POU1F1:0.287427548275;NFY{A,B,C}:0.283246330359;BPTF:0.263860558297;IKZF2:0.253059520549;HMGA1,2:0.241898081893;NKX3-1:0.230348073783;PRRX1,2:0.230266484553;NR5A1,2:0.223081365537;IRF7:0.212554249792;NKX2-2,8:0.207317641716;MYB:0.195836375939;ALX4:0.193429746484;FOSL2:0.18660233055;NKX3-2:0.141907478522;NFE2L1:0.13979593738;ETS1,2:0.130483198914;TGIF1:0.102183243633;HOXA9_MEIS1:0.0962809994332;GLI1..3:0.0941416721398;SRF:0.0937006224115;EP300:0.0672279472982;SOX2:0.0653223384772;FOXQ1:0.0652945335624;LMO2:0.0574500973133;JUN:0.0519368578182;FOXM1:0.050078760795;GATA6:0.0403906932719;CRX:0.0394646435114;LHX3,4:0.0377024929945;SNAI1..3:0.0267650238029;NR6A1:0.0130404768602;POU2F1..3:0.00855874266662;MYFfamily:-0.00942820251076;NKX2-3_NKX2-5:-0.0177179210136;NFE2L2:-0.0281846734225;ATF4:-0.0341985978917;HOX{A6,A7,B6,B7}:-0.0469393696911;ALX1:-0.0558419072119;CREB1:-0.0806628941624;STAT2,4,6:-0.0889824735466;NFE2:-0.0899565381375;ZEB1:-0.0906888469683;BACH2:-0.103258206508;NRF1:-0.10565576395;DMAP1_NCOR{1,2}_SMARC:-0.124620306732;FOXO1,3,4:-0.133616739319;ESR1:-0.135607599112;PBX1:-0.137397295893;TFCP2:-0.14846712702;HES1:-0.171663902732;ZFP161:-0.18739243578;ZNF148:-0.200723653628;TOPORS:-0.205953787688;SMAD1..7,9:-0.210950001181;PITX1..3:-0.220883466782;MYOD1:-0.233455212723;FOXP1:-0.23408295752;ATF6:-0.242007374289;SOX5:-0.243500899111;VSX1,2:-0.245187669971;HNF1A:-0.261770965395;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.265125253975;HIF1A:-0.290888633752;MAFB:-0.304203986415;NANOG:-0.308858653835;ELK1,4_GABP{A,B1}:-0.310777078327;TAL1_TCF{3,4,12}:-0.330568899059;FOS_FOS{B,L1}_JUN{B,D}:-0.333723809491;NFATC1..3:-0.339288010466;MAZ:-0.353517706386;SP1:-0.359808561891;TBP:-0.359879735741;AIRE:-0.369961497459;NFIL3:-0.375051437986;PAX8:-0.388433030941;E2F1..5:-0.392769068406;HOX{A4,D4}:-0.415261681361;GZF1:-0.415658157242;UFEwm:-0.418243326726;SOX17:-0.422006530828;ZNF238:-0.437896483355;PAX4:-0.442438714629;GFI1B:-0.443484277663;ZNF143:-0.45688201925;AR:-0.473947329721;MEF2{A,B,C,D}:-0.479933916879;SOX{8,9,10}:-0.512192894495;TBX4,5:-0.526692367615;GFI1:-0.543964902722;HLF:-0.585163962823;GATA4:-0.585429561934;ZIC1..3:-0.589775784782;LEF1_TCF7_TCF7L1,2:-0.592218127387;NR3C1:-0.636465296168;MYBL2:-0.638023405781;EBF1:-0.64708052913;MED-1{core}:-0.679870857101;ONECUT1,2:-0.690609056239;CEBPA,B_DDIT3:-0.703300882835;POU5F1:-0.709103498271;PPARG:-0.729306380103;RFX1:-0.73152424105;PAX3,7:-0.742947349403;BREu{core}:-0.747073243379;NR1H4:-0.771752240875;MTE{core}:-0.775339384286;TP53:-0.794700763016;XBP1:-0.815990615494;MZF1:-0.822464542015;EN1,2:-0.832833385508;NHLH1,2:-0.836917587993;KLF4:-0.849027364831;HBP1_HMGB_SSRP1_UBTF:-0.849642392006;RREB1:-0.85685138754;HOX{A5,B5}:-0.858677274187;EGR1..3:-0.859716813221;TLX1..3_NFIC{dimer}:-0.877139171365;TFAP4:-0.894220287831;MTF1:-0.932721548123;NKX2-1,4:-0.937192818519;TEAD1:-0.954275214106;IKZF1:-0.963556973073;ZBTB6:-1.00350541116;GTF2I:-1.01604425308;PRDM1:-1.03849479907;PAX5:-1.03932647576;FOX{I1,J2}:-1.05097194419;ZNF384:-1.09317390619;TFAP2{A,C}:-1.09518619101;PATZ1:-1.15886299729;XCPE1{core}:-1.16026600057;TFDP1:-1.1795531902;GCM1,2:-1.28702595043;REST:-1.30865334479;bHLH_family:-1.31110515862;CDC5L:-1.3303971566;GTF2A1,2:-1.34429021265;RBPJ:-1.35278930279;POU6F1:-1.41295506097;TEF:-1.45792402347;PAX1,9:-1.4626878608;TFAP2B:-1.47120712735;FOXD3:-1.49450986985;HIC1:-1.49491218675;T:-1.71787859518;ZNF423:-1.74657513244;ADNP_IRX_SIX_ZHX:-1.87859999256;FOXL1:-1.88453633075;DBP:-1.9552521099;RXR{A,B,G}:-2.02817866209;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-2.1452064383
|top_motifs=HSF1,2:2.66378505338;TLX2:2.04068133901;FOX{F1,F2,J1}:1.74879332592;NFKB1_REL_RELA:1.3468215698;PAX6:1.27870594624;HMX1:1.10169881176;STAT1,3:1.07380031586;FOXP3:1.03241005614;SREBF1,2:0.910338276538;FOXA2:0.853780168522;SPZ1:0.834033668722;FOXN1:0.797433172016;PDX1:0.740234603284;RXRA_VDR{dimer}:0.739962139759;ATF5_CREB3:0.731665822515;CDX1,2,4:0.7182668472;ARID5B:0.71164881984;RUNX1..3:0.702134795716;ATF2:0.698109748093;IRF1,2:0.687607153899;ESRRA:0.684380176748;ZBTB16:0.612993243127;NFIX:0.612957937399;OCT4_SOX2{dimer}:0.61191459706;AHR_ARNT_ARNT2:0.588188204661;HAND1,2:0.564933238998;NANOG{mouse}:0.563579512432;SPI1:0.490390101174;EVI1:0.486051528303;NKX6-1,2:0.461058796307;ELF1,2,4:0.457321165084;RFX2..5_RFXANK_RFXAP:0.417249112056;RORA:0.381245126748;SPIB:0.339557808932;YY1:0.338659738293;STAT5{A,B}:0.332896669443;HNF4A_NR2F1,2:0.327810557267;POU3F1..4:0.321547955746;FOX{D1,D2}:0.316263612588;PAX2:0.316082189992;CUX2:0.307104890901;POU1F1:0.287427548275;NFY{A,B,C}:0.283246330359;BPTF:0.263860558297;IKZF2:0.253059520549;HMGA1,2:0.241898081893;NKX3-1:0.230348073783;PRRX1,2:0.230266484553;NR5A1,2:0.223081365537;IRF7:0.212554249792;NKX2-2,8:0.207317641716;MYB:0.195836375939;ALX4:0.193429746484;FOSL2:0.18660233055;NKX3-2:0.141907478522;NFE2L1:0.13979593738;ETS1,2:0.130483198914;TGIF1:0.102183243633;HOXA9_MEIS1:0.0962809994332;GLI1..3:0.0941416721398;SRF:0.0937006224115;EP300:0.0672279472982;SOX2:0.0653223384772;FOXQ1:0.0652945335624;LMO2:0.0574500973133;JUN:0.0519368578182;FOXM1:0.050078760795;GATA6:0.0403906932719;CRX:0.0394646435114;LHX3,4:0.0377024929945;SNAI1..3:0.0267650238029;NR6A1:0.0130404768602;POU2F1..3:0.00855874266662;MYFfamily:-0.00942820251076;NKX2-3_NKX2-5:-0.0177179210136;NFE2L2:-0.0281846734225;ATF4:-0.0341985978917;HOX{A6,A7,B6,B7}:-0.0469393696911;ALX1:-0.0558419072119;CREB1:-0.0806628941624;STAT2,4,6:-0.0889824735466;NFE2:-0.0899565381375;ZEB1:-0.0906888469683;BACH2:-0.103258206508;NRF1:-0.10565576395;DMAP1_NCOR{1,2}_SMARC:-0.124620306732;FOXO1,3,4:-0.133616739319;ESR1:-0.135607599112;PBX1:-0.137397295893;TFCP2:-0.14846712702;HES1:-0.171663902732;ZFP161:-0.18739243578;ZNF148:-0.200723653628;TOPORS:-0.205953787688;SMAD1..7,9:-0.210950001181;PITX1..3:-0.220883466782;MYOD1:-0.233455212723;FOXP1:-0.23408295752;ATF6:-0.242007374289;SOX5:-0.243500899111;VSX1,2:-0.245187669971;HNF1A:-0.261770965395;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.265125253975;HIF1A:-0.290888633752;MAFB:-0.304203986415;NANOG:-0.308858653835;ELK1,4_GABP{A,B1}:-0.310777078327;TAL1_TCF{3,4,12}:-0.330568899059;FOS_FOS{B,L1}_JUN{B,D}:-0.333723809491;NFATC1..3:-0.339288010466;MAZ:-0.353517706386;SP1:-0.359808561891;TBP:-0.359879735741;AIRE:-0.369961497459;NFIL3:-0.375051437986;PAX8:-0.388433030941;E2F1..5:-0.392769068406;HOX{A4,D4}:-0.415261681361;GZF1:-0.415658157242;UFEwm:-0.418243326726;SOX17:-0.422006530828;ZNF238:-0.437896483355;PAX4:-0.442438714629;GFI1B:-0.443484277663;ZNF143:-0.45688201925;AR:-0.473947329721;MEF2{A,B,C,D}:-0.479933916879;SOX{8,9,10}:-0.512192894495;TBX4,5:-0.526692367615;GFI1:-0.543964902722;HLF:-0.585163962823;GATA4:-0.585429561934;ZIC1..3:-0.589775784782;LEF1_TCF7_TCF7L1,2:-0.592218127387;NR3C1:-0.636465296168;MYBL2:-0.638023405781;EBF1:-0.64708052913;MED-1{core}:-0.679870857101;ONECUT1,2:-0.690609056239;CEBPA,B_DDIT3:-0.703300882835;POU5F1:-0.709103498271;PPARG:-0.729306380103;RFX1:-0.73152424105;PAX3,7:-0.742947349403;BREu{core}:-0.747073243379;NR1H4:-0.771752240875;MTE{core}:-0.775339384286;TP53:-0.794700763016;XBP1:-0.815990615494;MZF1:-0.822464542015;EN1,2:-0.832833385508;NHLH1,2:-0.836917587993;KLF4:-0.849027364831;HBP1_HMGB_SSRP1_UBTF:-0.849642392006;RREB1:-0.85685138754;HOX{A5,B5}:-0.858677274187;EGR1..3:-0.859716813221;TLX1..3_NFIC{dimer}:-0.877139171365;TFAP4:-0.894220287831;MTF1:-0.932721548123;NKX2-1,4:-0.937192818519;TEAD1:-0.954275214106;IKZF1:-0.963556973073;ZBTB6:-1.00350541116;GTF2I:-1.01604425308;PRDM1:-1.03849479907;PAX5:-1.03932647576;FOX{I1,J2}:-1.05097194419;ZNF384:-1.09317390619;TFAP2{A,C}:-1.09518619101;PATZ1:-1.15886299729;XCPE1{core}:-1.16026600057;TFDP1:-1.1795531902;GCM1,2:-1.28702595043;REST:-1.30865334479;bHLH_family:-1.31110515862;CDC5L:-1.3303971566;GTF2A1,2:-1.34429021265;RBPJ:-1.35278930279;POU6F1:-1.41295506097;TEF:-1.45792402347;PAX1,9:-1.4626878608;TFAP2B:-1.47120712735;FOXD3:-1.49450986985;HIC1:-1.49491218675;T:-1.71787859518;ZNF423:-1.74657513244;ADNP_IRX_SIX_ZHX:-1.87859999256;FOXL1:-1.88453633075;DBP:-1.9552521099;RXR{A,B,G}:-2.02817866209;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-2.1452064383
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11901-125F2;search_select_hide=table117:FF:11901-125F2
}}
}}

Latest revision as of 18:27, 4 June 2020

Name:migratory langerhans cells, donor1
Species:Human (Homo sapiens)
Library ID:CNhs13535
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueNA
dev stageNA
sexNA
ageNA
cell typelangerhans cell
cell lineNA
companyNA
collaborationTeunis Geijtenbeek
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberLC-A
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005709
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13535 CAGE DRX008568 DRR009440
Accession ID Hg19

Library idBAMCTSS
CNhs13535 DRZ000865 DRZ002250
Accession ID Hg38

Library idBAMCTSS
CNhs13535 DRZ012215 DRZ013600
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0256
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.26
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0289
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.106
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.242
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.204
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage1.286
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0499
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0459
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0387
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0.0773
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.186
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.21
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.672
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.145
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.012
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0773
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.351
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.0773
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.428
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.0688
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.143
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b1.039
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0.0773
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13535

Jaspar motifP-value
MA0002.24.62557e-4
MA0003.10.78
MA0004.10.314
MA0006.10.853
MA0007.10.601
MA0009.10.0677
MA0014.10.478
MA0017.10.0106
MA0018.20.778
MA0019.10.941
MA0024.10.173
MA0025.10.0353
MA0027.10.532
MA0028.10.883
MA0029.10.47
MA0030.10.856
MA0031.10.535
MA0035.20.738
MA0038.10.365
MA0039.20.037
MA0040.10.205
MA0041.10.213
MA0042.10.364
MA0043.10.0765
MA0046.10.948
MA0047.20.588
MA0048.10.927
MA0050.10.0266
MA0051.10.283
MA0052.10.231
MA0055.10.667
MA0057.10.883
MA0058.10.34
MA0059.10.88
MA0060.10.871
MA0061.12.85641e-11
MA0062.20.135
MA0065.20.0223
MA0066.10.399
MA0067.10.0819
MA0068.10.00931
MA0069.10.822
MA0070.10.321
MA0071.10.162
MA0072.10.708
MA0073.10.941
MA0074.10.318
MA0076.10.673
MA0077.10.648
MA0078.11
MA0079.20.602
MA0080.23.38193e-5
MA0081.10.237
MA0083.10.215
MA0084.10.141
MA0087.10.286
MA0088.10.206
MA0090.10.00744
MA0091.10.854
MA0092.10.566
MA0093.10.234
MA0099.20.792
MA0100.10.626
MA0101.12.76346e-9
MA0102.20.475
MA0103.10.199
MA0104.20.92
MA0105.11.26245e-14
MA0106.10.574
MA0107.15.82163e-12
MA0108.25.93683e-5
MA0111.10.207
MA0112.20.00118
MA0113.10.444
MA0114.10.0188
MA0115.10.145
MA0116.15.69789e-4
MA0117.10.382
MA0119.10.377
MA0122.10.642
MA0124.10.439
MA0125.10.707
MA0131.10.773
MA0135.10.247
MA0136.19.72851e-4
MA0137.20.751
MA0138.20.411
MA0139.10.142
MA0140.10.402
MA0141.10.027
MA0142.10.491
MA0143.10.258
MA0144.10.622
MA0145.10.117
MA0146.10.258
MA0147.10.852
MA0148.10.406
MA0149.10.204
MA0150.10.0171
MA0152.10.183
MA0153.10.0582
MA0154.13.69408e-4
MA0155.10.318
MA0156.10.457
MA0157.10.32
MA0159.10.0233
MA0160.10.0176
MA0162.10.687
MA0163.11.47626e-5
MA0164.10.539
MA0258.10.0132
MA0259.10.515



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13535

Novel motifP-value
10.0173
100.0265
1000.944
1010.239
1020.492
1030.0287
1040.7
1050.121
1060.102
1070.919
1080.643
1090.0665
110.173
1100.274
1110.0425
1120.0311
1130.859
1140.00846
1150.267
1160.54
1170.0158
1180.0695
1190.0161
120.631
1200.707
1210.884
1220.842
1230.666
1240.182
1250.901
1260.049
1270.087
1280.0625
1290.253
130.0264
1300.85
1310.472
1320.385
1330.963
1340.957
1350.375
1360.636
1370.1
1380.761
1390.237
140.595
1400.00661
1410.65
1420.196
1430.379
1440.627
1450.352
1460.997
1470.175
1480.0431
1490.702
150.085
1500.672
1510.659
1520.491
1530.867
1540.265
1550.0661
1560.703
1570.65
1580.126
1590.986
160.202
1600.471
1610.0913
1620.648
1630.814
1640.428
1650.0286
1660.708
1670.661
1680.261
1690.0801
170.566
180.455
190.609
20.958
200.248
210.219
220.762
230.393
240.738
250.271
260.352
270.729
280.487
290.0938
30.0545
300.57
310.69
320.475
330.312
340.93
350.369
360.0776
370.187
380.363
390.989
40.408
400.156
410.28
420.19
430.124
440.0116
450.974
460.0873
470.137
480.263
490.076
50.439
500.874
510.269
520.195
530.528
540.433
550.557
560.881
570.169
580.0418
590.283
60.741
600.112
610.566
620.0238
630.486
640.32
650.508
660.244
670.255
680.75
690.699
70.103
700.027
710.0514
720.226
730.924
740.721
750.083
760.499
770.914
780.0284
790.857
80.513
800.98
810.394
820.172
830.231
840.257
850.401
860.319
870.381
880.306
890.535
90.94
900.00705
910.436
920.431
930.793
940.0813
950.152
960.00189
970.728
980.163
990.656



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13535


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000219 (motile cell)
0000738 (leukocyte)
0000990 (conventional dendritic cell)
0000255 (eukaryotic cell)
0000451 (dendritic cell)
0000453 (Langerhans cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0011136 (human migratory langerhans cells sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

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