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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004752
|DRA_sample_Accession=CAGE@SAMD00004752
|accession_numbers=CAGE;DRX008418;DRR009290;DRZ000715;DRZ002100
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004752
|accession_numbers=CAGE;DRX008418;DRR009290;DRZ000715;DRZ002100;DRZ012065;DRZ013450
|accession_numbers_RNASeq=sRNA-Seq;DRX037209;DRR041575;DRZ007217
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002334,CL:0002582
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002334,CL:0002582
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|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=SRhi10013,,,
|profile_srnaseq=SRhi10013,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 80: Line 82:
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|sample_category=primary cells
Line 103: Line 106:
|top_motifs=EN1,2:1.74655815021;GZF1:1.6671441606;NKX2-2,8:1.66584932636;HES1:1.6351898398;UFEwm:1.57466750442;ALX4:1.47201709791;PAX1,9:1.41946851874;RXR{A,B,G}:1.38083148138;ESR1:1.35678417963;ZNF238:1.30837240931;KLF4:1.10612077368;IKZF1:1.06014416766;FOXL1:1.00680464219;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.97870185935;TAL1_TCF{3,4,12}:0.970475773821;TFCP2:0.953712940906;NR3C1:0.915447083606;GLI1..3:0.743972164939;NFE2L1:0.743748310768;HOX{A4,D4}:0.722844014817;NR1H4:0.708173668567;TFDP1:0.706562574626;XBP1:0.68562637481;HOX{A5,B5}:0.676670290588;GATA4:0.671975089523;YY1:0.664239022472;SPZ1:0.643785437233;NKX3-2:0.643411852646;GFI1B:0.634947701936;ZIC1..3:0.62200873678;ZBTB6:0.619277655602;GCM1,2:0.616516008642;TLX1..3_NFIC{dimer}:0.612047785735;SRF:0.607580772412;ESRRA:0.60685922272;NANOG{mouse}:0.600896172383;TEAD1:0.550418500988;TP53:0.545747797262;HAND1,2:0.518842436188;FOX{I1,J2}:0.493511851335;E2F1..5:0.47948173641;HSF1,2:0.476463886012;MYBL2:0.473399411747;NKX3-1:0.466404090296;ATF6:0.453169302851;NR5A1,2:0.446188679312;ZNF384:0.445094574853;MYB:0.441577267415;EVI1:0.40634263181;EBF1:0.393634726276;NFE2L2:0.385199172724;MZF1:0.381729810428;GFI1:0.377434572831;RXRA_VDR{dimer}:0.36402978146;PRDM1:0.348805397488;NFATC1..3:0.32831181578;GTF2I:0.303667182517;TFAP4:0.288790651223;TBP:0.28756975292;MAFB:0.280596341739;BACH2:0.278321310852;TFAP2B:0.273375641657;ZNF423:0.267254929625;PPARG:0.266135298119;TFAP2{A,C}:0.265871227021;FOS_FOS{B,L1}_JUN{B,D}:0.225573515217;LEF1_TCF7_TCF7L1,2:0.224684908211;PAX8:0.222843353391;PAX5:0.222371574474;CDC5L:0.220439989655;ELK1,4_GABP{A,B1}:0.210031773118;ZNF143:0.206722510318;PBX1:0.198832067256;SMAD1..7,9:0.186168644403;EGR1..3:0.178167215899;SOX17:0.16165736655;TEF:0.161405419656;XCPE1{core}:0.132263122409;ARID5B:0.111025730028;TBX4,5:0.103446648791;FOXD3:0.0943783001196;ZNF148:0.0899587678401;LHX3,4:0.0861820830199;NR6A1:0.0762267293385;STAT2,4,6:0.0607922438609;HIF1A:0.0570473860125;AR:0.0564983298776;TOPORS:0.0553091824812;HIC1:0.0324626874292;IRF1,2:0.0194970883921;DBP:0.00226913249694;PATZ1:-0.0119539971929;NRF1:-0.0189571319803;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0235898811968;PAX3,7:-0.0290879022032;NFIX:-0.0477402132595;POU3F1..4:-0.0555615628313;HBP1_HMGB_SSRP1_UBTF:-0.0556717214454;HOX{A6,A7,B6,B7}:-0.0577397090287;MTE{core}:-0.0577530591499;HLF:-0.0603697455395;REST:-0.0687743200272;NHLH1,2:-0.0697726293381;GTF2A1,2:-0.0775506817148;HNF1A:-0.079823466158;ALX1:-0.0841806388646;DMAP1_NCOR{1,2}_SMARC:-0.0906000802329;bHLH_family:-0.0989958873054;AHR_ARNT_ARNT2:-0.101133382237;NKX6-1,2:-0.102203036906;AIRE:-0.110584919572;RUNX1..3:-0.130007451733;RREB1:-0.153765853255;ONECUT1,2:-0.165422240971;HMX1:-0.180172038746;CREB1:-0.185390631441;STAT1,3:-0.185841045419;MYFfamily:-0.194323741449;MTF1:-0.199651302946;PAX4:-0.207834135108;HNF4A_NR2F1,2:-0.215422335843;FOSL2:-0.22077136664;HMGA1,2:-0.221262098205;FOXQ1:-0.271685465666;POU2F1..3:-0.273128491739;SOX5:-0.273951554981;RFX1:-0.295087565337;NFKB1_REL_RELA:-0.303014402774;SPI1:-0.307300987088;ZFP161:-0.333439519853;MEF2{A,B,C,D}:-0.334265176061;POU6F1:-0.350312770451;JUN:-0.357768018034;IRF7:-0.398929731986;MAZ:-0.409684139346;NFE2:-0.410339452825;PRRX1,2:-0.418842027464;HOXA9_MEIS1:-0.419149179969;ELF1,2,4:-0.424376395127;FOXM1:-0.444568827864;OCT4_SOX2{dimer}:-0.44700551479;SOX{8,9,10}:-0.463363490106;SPIB:-0.474246434825;FOXO1,3,4:-0.487510736727;PDX1:-0.496491881399;NKX2-1,4:-0.511687360878;CRX:-0.517994663828;MED-1{core}:-0.53489756373;POU1F1:-0.563713630508;NFY{A,B,C}:-0.564276342809;NKX2-3_NKX2-5:-0.583333583334;LMO2:-0.590829332854;SP1:-0.600899184299;ETS1,2:-0.605419423084;NFIL3:-0.605661429673;PAX2:-0.630468009366;TGIF1:-0.656277042497;NANOG:-0.658579511079;BREu{core}:-0.66158738042;ATF5_CREB3:-0.679441843565;FOXP1:-0.686288853425;POU5F1:-0.702110984789;EP300:-0.74651707714;ZBTB16:-0.797312421064;SNAI1..3:-0.814676804576;GATA6:-0.824063803592;MYOD1:-0.836242681283;T:-0.846478813349;ATF2:-0.85194723536;STAT5{A,B}:-0.85943748762;IKZF2:-0.878726260833;TLX2:-0.882130913358;CEBPA,B_DDIT3:-0.886686560788;VSX1,2:-0.910236021573;RFX2..5_RFXANK_RFXAP:-0.922276982721;CUX2:-0.927457290028;ZEB1:-0.938854098185;CDX1,2,4:-0.945853712653;FOXP3:-0.971646437291;PITX1..3:-0.983570551774;FOXN1:-0.9986086924;SOX2:-1.0094555691;ATF4:-1.00975395626;PAX6:-1.0144008606;SREBF1,2:-1.0434925316;ADNP_IRX_SIX_ZHX:-1.11815468125;FOX{D1,D2}:-1.12004125248;BPTF:-1.12566403689;FOXA2:-1.27734846748;RBPJ:-1.4002510174;FOX{F1,F2,J1}:-1.48534075568;RORA:-1.52229815106
|top_motifs=EN1,2:1.74655815021;GZF1:1.6671441606;NKX2-2,8:1.66584932636;HES1:1.6351898398;UFEwm:1.57466750442;ALX4:1.47201709791;PAX1,9:1.41946851874;RXR{A,B,G}:1.38083148138;ESR1:1.35678417963;ZNF238:1.30837240931;KLF4:1.10612077368;IKZF1:1.06014416766;FOXL1:1.00680464219;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.97870185935;TAL1_TCF{3,4,12}:0.970475773821;TFCP2:0.953712940906;NR3C1:0.915447083606;GLI1..3:0.743972164939;NFE2L1:0.743748310768;HOX{A4,D4}:0.722844014817;NR1H4:0.708173668567;TFDP1:0.706562574626;XBP1:0.68562637481;HOX{A5,B5}:0.676670290588;GATA4:0.671975089523;YY1:0.664239022472;SPZ1:0.643785437233;NKX3-2:0.643411852646;GFI1B:0.634947701936;ZIC1..3:0.62200873678;ZBTB6:0.619277655602;GCM1,2:0.616516008642;TLX1..3_NFIC{dimer}:0.612047785735;SRF:0.607580772412;ESRRA:0.60685922272;NANOG{mouse}:0.600896172383;TEAD1:0.550418500988;TP53:0.545747797262;HAND1,2:0.518842436188;FOX{I1,J2}:0.493511851335;E2F1..5:0.47948173641;HSF1,2:0.476463886012;MYBL2:0.473399411747;NKX3-1:0.466404090296;ATF6:0.453169302851;NR5A1,2:0.446188679312;ZNF384:0.445094574853;MYB:0.441577267415;EVI1:0.40634263181;EBF1:0.393634726276;NFE2L2:0.385199172724;MZF1:0.381729810428;GFI1:0.377434572831;RXRA_VDR{dimer}:0.36402978146;PRDM1:0.348805397488;NFATC1..3:0.32831181578;GTF2I:0.303667182517;TFAP4:0.288790651223;TBP:0.28756975292;MAFB:0.280596341739;BACH2:0.278321310852;TFAP2B:0.273375641657;ZNF423:0.267254929625;PPARG:0.266135298119;TFAP2{A,C}:0.265871227021;FOS_FOS{B,L1}_JUN{B,D}:0.225573515217;LEF1_TCF7_TCF7L1,2:0.224684908211;PAX8:0.222843353391;PAX5:0.222371574474;CDC5L:0.220439989655;ELK1,4_GABP{A,B1}:0.210031773118;ZNF143:0.206722510318;PBX1:0.198832067256;SMAD1..7,9:0.186168644403;EGR1..3:0.178167215899;SOX17:0.16165736655;TEF:0.161405419656;XCPE1{core}:0.132263122409;ARID5B:0.111025730028;TBX4,5:0.103446648791;FOXD3:0.0943783001196;ZNF148:0.0899587678401;LHX3,4:0.0861820830199;NR6A1:0.0762267293385;STAT2,4,6:0.0607922438609;HIF1A:0.0570473860125;AR:0.0564983298776;TOPORS:0.0553091824812;HIC1:0.0324626874292;IRF1,2:0.0194970883921;DBP:0.00226913249694;PATZ1:-0.0119539971929;NRF1:-0.0189571319803;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0235898811968;PAX3,7:-0.0290879022032;NFIX:-0.0477402132595;POU3F1..4:-0.0555615628313;HBP1_HMGB_SSRP1_UBTF:-0.0556717214454;HOX{A6,A7,B6,B7}:-0.0577397090287;MTE{core}:-0.0577530591499;HLF:-0.0603697455395;REST:-0.0687743200272;NHLH1,2:-0.0697726293381;GTF2A1,2:-0.0775506817148;HNF1A:-0.079823466158;ALX1:-0.0841806388646;DMAP1_NCOR{1,2}_SMARC:-0.0906000802329;bHLH_family:-0.0989958873054;AHR_ARNT_ARNT2:-0.101133382237;NKX6-1,2:-0.102203036906;AIRE:-0.110584919572;RUNX1..3:-0.130007451733;RREB1:-0.153765853255;ONECUT1,2:-0.165422240971;HMX1:-0.180172038746;CREB1:-0.185390631441;STAT1,3:-0.185841045419;MYFfamily:-0.194323741449;MTF1:-0.199651302946;PAX4:-0.207834135108;HNF4A_NR2F1,2:-0.215422335843;FOSL2:-0.22077136664;HMGA1,2:-0.221262098205;FOXQ1:-0.271685465666;POU2F1..3:-0.273128491739;SOX5:-0.273951554981;RFX1:-0.295087565337;NFKB1_REL_RELA:-0.303014402774;SPI1:-0.307300987088;ZFP161:-0.333439519853;MEF2{A,B,C,D}:-0.334265176061;POU6F1:-0.350312770451;JUN:-0.357768018034;IRF7:-0.398929731986;MAZ:-0.409684139346;NFE2:-0.410339452825;PRRX1,2:-0.418842027464;HOXA9_MEIS1:-0.419149179969;ELF1,2,4:-0.424376395127;FOXM1:-0.444568827864;OCT4_SOX2{dimer}:-0.44700551479;SOX{8,9,10}:-0.463363490106;SPIB:-0.474246434825;FOXO1,3,4:-0.487510736727;PDX1:-0.496491881399;NKX2-1,4:-0.511687360878;CRX:-0.517994663828;MED-1{core}:-0.53489756373;POU1F1:-0.563713630508;NFY{A,B,C}:-0.564276342809;NKX2-3_NKX2-5:-0.583333583334;LMO2:-0.590829332854;SP1:-0.600899184299;ETS1,2:-0.605419423084;NFIL3:-0.605661429673;PAX2:-0.630468009366;TGIF1:-0.656277042497;NANOG:-0.658579511079;BREu{core}:-0.66158738042;ATF5_CREB3:-0.679441843565;FOXP1:-0.686288853425;POU5F1:-0.702110984789;EP300:-0.74651707714;ZBTB16:-0.797312421064;SNAI1..3:-0.814676804576;GATA6:-0.824063803592;MYOD1:-0.836242681283;T:-0.846478813349;ATF2:-0.85194723536;STAT5{A,B}:-0.85943748762;IKZF2:-0.878726260833;TLX2:-0.882130913358;CEBPA,B_DDIT3:-0.886686560788;VSX1,2:-0.910236021573;RFX2..5_RFXANK_RFXAP:-0.922276982721;CUX2:-0.927457290028;ZEB1:-0.938854098185;CDX1,2,4:-0.945853712653;FOXP3:-0.971646437291;PITX1..3:-0.983570551774;FOXN1:-0.9986086924;SOX2:-1.0094555691;ATF4:-1.00975395626;PAX6:-1.0144008606;SREBF1,2:-1.0434925316;ADNP_IRX_SIX_ZHX:-1.11815468125;FOX{D1,D2}:-1.12004125248;BPTF:-1.12566403689;FOXA2:-1.27734846748;RBPJ:-1.4002510174;FOX{F1,F2,J1}:-1.48534075568;RORA:-1.52229815106
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11429-118G7;search_select_hide=table117:FF:11429-118G7
}}
}}

Latest revision as of 18:00, 4 June 2020

Name:Preadipocyte - visceral, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12039
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueheart
dev stage51 years old adult
sexfemale
age51
cell typepreadipocyte
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1851
catalog numberCA802s-R10a
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004752
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12039 CAGE DRX008418 DRR009290
Accession ID Hg19

Library idBAMCTSS
CNhs12039 DRZ000715 DRZ002100
Accession ID Hg38

Library idBAMCTSS
CNhs12039 DRZ012065 DRZ013450
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004752
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10013.ACTTGA sRNA-Seq DRX037209 DRR041575
Accession ID Hg19

Library idBAMCTSS
SRhi10013.ACTTGA DRZ007217


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0168
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.291
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.259
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0105
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.199
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.125
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.0477
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.0477
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.833
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.208
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.257
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.0908
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.4
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0674
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.0908
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.298
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0.0477
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.141
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0.13
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.311
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.335
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.565
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.4
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.474
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.00549
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.663
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12039

Jaspar motifP-value
MA0002.20.518
MA0003.10.212
MA0004.10.739
MA0006.10.401
MA0007.10.22
MA0009.10.547
MA0014.10.562
MA0017.10.825
MA0018.27.93063e-5
MA0019.10.182
MA0024.10.274
MA0025.10.0798
MA0027.10.84
MA0028.10.783
MA0029.10.366
MA0030.10.00137
MA0031.10.00108
MA0035.20.0214
MA0038.10.0385
MA0039.20.0742
MA0040.10.901
MA0041.10.756
MA0042.10.657
MA0043.16.01815e-6
MA0046.10.514
MA0047.20.196
MA0048.10.0397
MA0050.10.767
MA0051.10.695
MA0052.10.24
MA0055.10.182
MA0057.10.157
MA0058.10.59
MA0059.10.134
MA0060.12.92871e-5
MA0061.10.941
MA0062.20.00852
MA0065.20.952
MA0066.10.371
MA0067.10.0298
MA0068.10.988
MA0069.10.359
MA0070.10.391
MA0071.10.337
MA0072.10.407
MA0073.10.958
MA0074.10.168
MA0076.10.403
MA0077.10.348
MA0078.10.819
MA0079.20.939
MA0080.21.39948e-6
MA0081.10.0937
MA0083.10.00645
MA0084.10.329
MA0087.10.89
MA0088.10.0668
MA0090.10.12
MA0091.10.0575
MA0092.10.374
MA0093.10.745
MA0099.20.352
MA0100.10.693
MA0101.10.0348
MA0102.20.00303
MA0103.10.00288
MA0104.20.89
MA0105.10.34
MA0106.10.0486
MA0107.10.0728
MA0108.20.0576
MA0111.10.512
MA0112.20.0202
MA0113.10.648
MA0114.10.261
MA0115.10.635
MA0116.10.033
MA0117.10.378
MA0119.10.329
MA0122.10.232
MA0124.10.141
MA0125.10.231
MA0131.10.417
MA0135.10.356
MA0136.12.28775e-6
MA0137.20.713
MA0138.20.34
MA0139.10.955
MA0140.10.0511
MA0141.10.116
MA0142.10.393
MA0143.10.757
MA0144.10.722
MA0145.10.425
MA0146.10.461
MA0147.10.522
MA0148.10.291
MA0149.10.794
MA0150.10.435
MA0152.10.0144
MA0153.10.145
MA0154.10.398
MA0155.10.54
MA0156.13.46641e-5
MA0157.10.047
MA0159.10.916
MA0160.10.7
MA0162.10.156
MA0163.10.0029
MA0164.10.826
MA0258.10.842
MA0259.10.726



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12039

Novel motifP-value
10.514
100.217
1000.928
1010.233
1020.684
1030.265
1040.911
1050.233
1060.542
1070.183
1080.355
1090.0731
110.235
1100.045
1110.804
1120.108
1130.00689
1140.529
1150.00672
1160.0271
1170.255
1180.935
1190.737
120.455
1200.0973
1210.919
1220.019
1230.00953
1240.566
1250.265
1260.711
1270.731
1280.649
1290.973
130.845
1300.402
1310.288
1320.42
1330.0767
1340.731
1350.904
1360.292
1370.531
1380.567
1390.358
140.0783
1400.545
1410.896
1420.769
1430.213
1440.969
1450.686
1460.424
1470.0552
1480.59
1490.142
150.574
1500.108
1510.799
1520.0187
1530.423
1540.638
1550.237
1560.758
1570.373
1580.00853
1590.169
160.0286
1600.154
1610.522
1620.694
1630.45
1640.253
1650.53
1660.379
1670.368
1680.823
1690.0244
170.271
180.296
190.0198
20.116
200.503
210.0163
220.264
230.597
240.96
250.514
260.259
270.116
280.0869
290.1
30.372
300.181
310.85
323.93155e-8
330.993
340.525
350.71
360.0161
370.0494
380.954
390.0944
40.282
400.143
410.177
420.903
430.78
440.0103
450.972
460.241
470.649
480.483
490.288
50.593
500.447
510.595
520.831
530.116
540.722
550.509
560.89
570.72
580.61
590.0194
60.412
600.905
610.802
620.477
630.631
640.766
650.299
660.509
670.504
680.726
690.2
70.402
700.929
710.167
720.718
730.00925
740.144
750.14
760.819
770.00265
780.471
790.0203
80.046
800.492
810.997
820.658
830.745
840.683
850.78
860.576
870.00747
880.565
890.0645
90.162
900.135
910.831
920.524
930.758
940.666
950.00269
960.393
970.999
980.671
990.0047



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12039


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002334 (preadipocyte)
0002582 (visceral preadipocyte)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000137 (human preadipocyte sample)
0000143 (human visceral preadipocyte sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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