FFCP PHASE1:Hg19::chr12:65153154..65153171,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr12:65153154..65153171,- to FFCP PHASE1:Hg19::chr12:65153154..65153171,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2799 | |EntrezGene=2799 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4422 | |HGNC=4422 | ||
|TSSclassifier=strong | |||
|UniProt=B4DTT0,F6S8M0,F5H260 | |UniProt=B4DTT0,F6S8M0,F5H260 | ||
|association_with_transcript=14bp_to_ENST00000539825,ENST00000543646,ENST00000545471_5end | |||
|cluster_id=chr12:65153154..65153171,- | |||
|coexpression_cluster_id=C314 | |||
|description=CAGE_peak_2_at_GNS_5end | |||
|id=chr12:65153154..65153171,- | |||
|ontology_enrichment_celltype=CL:0000766!4.55e-34!76;CL:0000839!7.42e-28!70;CL:0002194!1.68e-27!63;CL:0000576!1.68e-27!63;CL:0000040!1.68e-27!63;CL:0000559!1.68e-27!63;CL:0000557!4.88e-27!71;CL:0002057!6.89e-26!42;CL:0002009!1.51e-25!65;CL:0000860!2.75e-23!45;CL:0000763!1.13e-15!112;CL:0000049!1.13e-15!112;CL:0000213!1.72e-09!57;CL:0000215!1.72e-09!57;CL:0000115!7.02e-09!35;CL:0002078!8.60e-09!44;CL:0002139!2.35e-08!24;CL:0000222!2.47e-07!119 | |||
|ontology_enrichment_celltype_v019=CL:0000473;1.33e-19;39!CL:0000234;1.33e-19;39!CL:0000860;2.99e-19;33!CL:0002057;2.99e-19;33!CL:0000576;3.37e-16;48!CL:0000766;7.60e-16;69!CL:0002139;2.39e-08;24!CL:0000115;2.59e-08;36!CL:0002078;7.27e-07;45 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,3.14e-36,72;CL:0000473,5.55e-30,48;CL:0000234,5.55e-30,48;CL:0000839,8.41e-30,66;CL:0002194,1.25e-29,59;CL:0000576,1.25e-29,59;CL:0000040,1.25e-29,59;CL:0000559,1.25e-29,59;CL:0000557,6.63e-29,67;CL:0002009,1.78e-27,61;CL:0000860,6.69e-26,42;CL:0002057,6.69e-26,42;CL:0000763,1.49e-16,108;CL:0000049,1.49e-16,108;CL:0000213,6.96e-10,58;CL:0000215,6.96e-10,58;CL:0000115,2.60e-09,36;CL:0002078,3.37e-09,45;CL:0002139,2.33e-08,24;CL:0000222,1.15e-07,121 | |||
|ontology_enrichment_development_v019=CL:0002057;6.24e-19;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!9.99e-27!216;UBERON:0002193!1.21e-25!112;UBERON:0002371!2.33e-24!80;UBERON:0002390!7.08e-24!102;UBERON:0003061!7.08e-24!102;UBERON:0000926!1.07e-23!448;UBERON:0004120!1.07e-23!448;UBERON:0006603!1.07e-23!448;UBERON:0001474!1.62e-22!86;UBERON:0002405!3.56e-21!115;UBERON:0004765!5.52e-19!101;UBERON:0001434!5.52e-19!101;UBERON:0002204!1.49e-15!167;UBERON:0000468!6.94e-13!659;UBERON:0000467!1.14e-12!625;UBERON:0000480!2.40e-12!626;UBERON:0001009!2.39e-10!113;UBERON:0004535!5.98e-10!110;UBERON:0002050!2.46e-09!605;UBERON:0005423!2.46e-09!605;UBERON:0000923!3.36e-09!604;UBERON:0005291!3.36e-09!604;UBERON:0006598!3.36e-09!604;UBERON:0002532!3.36e-09!604;UBERON:0000922!1.02e-08!612;UBERON:0004872!3.56e-07!84 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,2.88e-31,315;UBERON:0004120,2.88e-31,315;UBERON:0006603,2.88e-31,315;UBERON:0003081,1.07e-28,203;UBERON:0002193,9.07e-27,108;UBERON:0002371,7.17e-26,76;UBERON:0002390,4.99e-25,98;UBERON:0003061,4.99e-25,98;UBERON:0002405,5.30e-25,93;UBERON:0001474,7.87e-24,82;UBERON:0004765,1.58e-21,90;UBERON:0001434,1.47e-19,100;UBERON:0002204,5.49e-16,167;UBERON:0001009,3.63e-10,112;UBERON:0004535,9.05e-10,109;UBERON:0005423,1.72e-08,581;UBERON:0000923,2.07e-08,560;UBERON:0010316,2.07e-08,560;UBERON:0005291,2.07e-08,560;UBERON:0006598,2.07e-08,560;UBERON:0010317,2.07e-08,560;UBERON:0002532,2.07e-08,560;UBERON:0002050,3.08e-08,564;UBERON:0000922,6.33e-08,592;UBERON:0004872,5.25e-07,83 | |||
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| ||
|short_description=p2@GNS | |||
}} | }} |
Latest revision as of 21:40, 19 September 2015
Short description: | p2@GNS |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_GNS_5end |
Coexpression cluster: | C314_Macrophage_Dendritic_Monocytederived_CD14_Esophageal_Mast_Keratinocyte |
Association with transcript: | 14bp_to_ENST00000539825, ENST00000543646, ENST00000545471_5end |
EntrezGene: | GNS |
HGNC: | 4422 |
UniProt: | B4DTT0F6S8M0F5H260 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 3.14e-36 | 72 |
defensive cell | 5.55e-30 | 48 |
phagocyte | 5.55e-30 | 48 |
myeloid lineage restricted progenitor cell | 8.41e-30 | 66 |
monopoietic cell | 1.25e-29 | 59 |
monocyte | 1.25e-29 | 59 |
monoblast | 1.25e-29 | 59 |
promonocyte | 1.25e-29 | 59 |
granulocyte monocyte progenitor cell | 6.63e-29 | 67 |
macrophage dendritic cell progenitor | 1.78e-27 | 61 |
classical monocyte | 6.69e-26 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.69e-26 | 42 |
myeloid cell | 1.49e-16 | 108 |
common myeloid progenitor | 1.49e-16 | 108 |
lining cell | 6.96e-10 | 58 |
barrier cell | 6.96e-10 | 58 |
endothelial cell | 2.60e-09 | 36 |
meso-epithelial cell | 3.37e-09 | 45 |
endothelial cell of vascular tree | 2.33e-08 | 24 |
mesodermal cell | 1.15e-07 | 121 |
Ontology term | p-value | n |
---|---|---|
mesoderm | 2.88e-31 | 315 |
mesoderm-derived structure | 2.88e-31 | 315 |
presumptive mesoderm | 2.88e-31 | 315 |
lateral plate mesoderm | 1.07e-28 | 203 |
hemolymphoid system | 9.07e-27 | 108 |
bone marrow | 7.17e-26 | 76 |
hematopoietic system | 4.99e-25 | 98 |
blood island | 4.99e-25 | 98 |
immune system | 5.30e-25 | 93 |
bone element | 7.87e-24 | 82 |
skeletal element | 1.58e-21 | 90 |
skeletal system | 1.47e-19 | 100 |
musculoskeletal system | 5.49e-16 | 167 |
circulatory system | 3.63e-10 | 112 |
cardiovascular system | 9.05e-10 | 109 |
developing anatomical structure | 1.72e-08 | 581 |
germ layer | 2.07e-08 | 560 |
germ layer / neural crest | 2.07e-08 | 560 |
embryonic tissue | 2.07e-08 | 560 |
presumptive structure | 2.07e-08 | 560 |
germ layer / neural crest derived structure | 2.07e-08 | 560 |
epiblast (generic) | 2.07e-08 | 560 |
embryonic structure | 3.08e-08 | 564 |
embryo | 6.33e-08 | 592 |
splanchnic layer of lateral plate mesoderm | 5.25e-07 | 83 |