FFCP PHASE1:Hg19::chr19:54376789..54376808,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr19:54376789..54376808,+ to FFCP PHASE1:Hg19::chr19:54376789..54376808,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=6bp_to_CU680730_5end | |||
|cluster_id=chr19:54376789..54376808,+ | |||
|coexpression_cluster_id=C482 | |||
|description=CAGE_peak_1_at_CU680730_5end | |||
|id=chr19:54376789..54376808,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.57e-16!42;CL:0000766!2.30e-14!76;CL:0000860!4.04e-14!45;CL:0000557!2.40e-12!71;CL:0000839!3.25e-10!70;CL:0002009!8.69e-10!65;CL:0002194!4.10e-09!63;CL:0000576!4.10e-09!63;CL:0000040!4.10e-09!63;CL:0000559!4.10e-09!63;CL:0000763!1.02e-08!112;CL:0000049!1.02e-08!112;CL:0000048!2.96e-08!430;CL:0000723!1.11e-07!436;CL:0000034!1.85e-07!444;CL:0000134!3.73e-07!358;CL:0002320!5.39e-07!365 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.76e-26;33!CL:0002057;1.76e-26;33!CL:0000473;4.05e-19;39!CL:0000234;4.05e-19;39!CL:0000766;2.26e-12;69!CL:0000576;6.59e-12;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.27e-23,42;CL:0002057,1.27e-23,42;CL:0000766,1.18e-22,72;CL:0000473,2.84e-21,48;CL:0000234,2.84e-21,48;CL:0000557,1.05e-19,67;CL:0000839,3.26e-17,66;CL:0002009,1.03e-15,61;CL:0002194,1.16e-14,59;CL:0000576,1.16e-14,59;CL:0000040,1.16e-14,59;CL:0000559,1.16e-14,59;CL:0000763,9.81e-12,108;CL:0000049,9.81e-12,108;CL:0000048,1.34e-11,427;CL:0000723,3.95e-11,433;CL:0000134,6.21e-11,354;CL:0000034,1.82e-10,441;CL:0002320,2.66e-10,361;CL:0000219,9.47e-08,386;CL:0000738,2.78e-07,136 | |||
|ontology_enrichment_development_v019=CL:0002057;8.98e-18;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!3.42e-14!216;UBERON:0002390!2.73e-10!102;UBERON:0003061!2.73e-10!102;UBERON:0002371!3.26e-10!80;UBERON:0002193!7.23e-10!112;UBERON:0001474!4.94e-09!86;UBERON:0002204!1.35e-08!167;UBERON:0000926!2.52e-08!448;UBERON:0004120!2.52e-08!448;UBERON:0006603!2.52e-08!448;UBERON:0001009!3.57e-07!113;UBERON:0004765!7.16e-07!101;UBERON:0001434!7.16e-07!101;UBERON:0002384!7.96e-07!375;UBERON:0004535!8.65e-07!110 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003081,8.12e-19,203;UBERON:0002371,4.98e-16,76;UBERON:0000926,2.81e-15,315;UBERON:0004120,2.81e-15,315;UBERON:0006603,2.81e-15,315;UBERON:0002390,1.05e-14,98;UBERON:0003061,1.05e-14,98;UBERON:0001474,2.26e-14,82;UBERON:0002193,3.38e-14,108;UBERON:0002405,1.17e-12,93;UBERON:0004765,4.01e-12,90;UBERON:0002204,6.33e-11,167;UBERON:0001434,2.22e-10,100;UBERON:0002384,4.95e-10,371 | |||
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| ||
|short_description=p1@CU680730 | |||
}} | }} |
Latest revision as of 17:03, 27 July 2015
Short description: | p1@CU680730 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CU680730_5end |
Coexpression cluster: | C482_CD14_Mast_Fibroblast_Smooth_Neutrophils_Basophils_Mesenchymal |
Association with transcript: | 6bp_to_CU680730_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.27e-23 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.27e-23 | 42 |
myeloid leukocyte | 1.18e-22 | 72 |
defensive cell | 2.84e-21 | 48 |
phagocyte | 2.84e-21 | 48 |
granulocyte monocyte progenitor cell | 1.05e-19 | 67 |
myeloid lineage restricted progenitor cell | 3.26e-17 | 66 |
macrophage dendritic cell progenitor | 1.03e-15 | 61 |
monopoietic cell | 1.16e-14 | 59 |
monocyte | 1.16e-14 | 59 |
monoblast | 1.16e-14 | 59 |
promonocyte | 1.16e-14 | 59 |
myeloid cell | 9.81e-12 | 108 |
common myeloid progenitor | 9.81e-12 | 108 |
multi fate stem cell | 1.34e-11 | 427 |
somatic stem cell | 3.95e-11 | 433 |
mesenchymal cell | 6.21e-11 | 354 |
stem cell | 1.82e-10 | 441 |
connective tissue cell | 2.66e-10 | 361 |
motile cell | 9.47e-08 | 386 |
leukocyte | 2.78e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
lateral plate mesoderm | 8.12e-19 | 203 |
bone marrow | 4.98e-16 | 76 |
mesoderm | 2.81e-15 | 315 |
mesoderm-derived structure | 2.81e-15 | 315 |
presumptive mesoderm | 2.81e-15 | 315 |
hematopoietic system | 1.05e-14 | 98 |
blood island | 1.05e-14 | 98 |
bone element | 2.26e-14 | 82 |
hemolymphoid system | 3.38e-14 | 108 |
immune system | 1.17e-12 | 93 |
skeletal element | 4.01e-12 | 90 |
musculoskeletal system | 6.33e-11 | 167 |
skeletal system | 2.22e-10 | 100 |
connective tissue | 4.95e-10 | 371 |