FFCP PHASE1:Hg19::chr1:43148059..43148108,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:43148059..43148108,+ to FFCP PHASE1:Hg19::chr1:43148059..43148108,+: NSchange) |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4904 | |EntrezGene=4904 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8014 | |HGNC=8014 | ||
|TSSclassifier=strong | |||
|UniProt=P67809 | |UniProt=P67809 | ||
|association_with_transcript=0bp_to_ENST00000321358,NM_004559,uc001chs.2_5end | |||
|cluster_id=chr1:43148059..43148108,+ | |||
|description=CAGE_peak_1_at_YBX1_5end | |||
|id=chr1:43148059..43148108,+ | |||
|ontology_enrichment_celltype=CL:0000012!1.56e-32!682;CL:0000548!1.73e-32!679;CL:0000004!1.73e-32!679;CL:0000255!1.73e-32!679;CL:0002371!8.43e-31!591;CL:0000144!9.30e-31!625;CL:0000003!3.09e-25!722;CL:0000034!1.17e-18!444;CL:0000723!1.34e-18!436;CL:0000048!1.73e-18!430;CL:0002057!3.00e-17!42;CL:0002009!3.96e-17!65;CL:0000860!4.15e-17!45;CL:0002194!1.28e-16!63;CL:0000576!1.28e-16!63;CL:0000040!1.28e-16!63;CL:0000559!1.28e-16!63;CL:0000839!1.43e-16!70;CL:0000763!6.36e-16!112;CL:0000049!6.36e-16!112;CL:0000557!2.40e-15!71;CL:0000063!3.85e-14!578;CL:0000766!7.86e-12!76;CL:0000219!7.69e-11!390;CL:0002320!9.22e-11!365;CL:0000134!5.62e-10!358;CL:0000183!1.20e-08!59;CL:0000055!3.73e-08!180;CL:0000988!8.43e-08!182;CL:0002032!1.32e-07!165;CL:0000837!1.32e-07!165;CL:0000222!2.40e-07!119;CL:0000187!2.98e-07!54;CL:0000393!3.39e-07!60;CL:0000211!3.39e-07!60;CL:0002031!8.65e-07!124;CL:0000680!9.03e-07!57;CL:0000056!9.03e-07!57;CL:0000355!9.03e-07!57;CL:0000037!9.44e-07!172;CL:0000566!9.44e-07!172 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.05e-14;33!CL:0002057;2.05e-14;33!CL:0000473;8.92e-14;39!CL:0000234;8.92e-14;39!CL:0000576;5.19e-11;48!CL:0000766;2.69e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,2.91e-19,48;CL:0000234,2.91e-19,48;CL:0000034,2.78e-18,441;CL:0000723,3.15e-18,433;CL:0000048,4.03e-18,427;CL:0002009,6.23e-18,61;CL:0002194,2.00e-17,59;CL:0000576,2.00e-17,59;CL:0000040,2.00e-17,59;CL:0000559,2.00e-17,59;CL:0000839,2.83e-17,66;CL:0000860,3.00e-17,42;CL:0002057,3.00e-17,42;CL:0000763,2.74e-16,108;CL:0000049,2.74e-16,108;CL:0000557,5.61e-16,67;CL:0000766,2.98e-12,72;CL:0000219,2.14e-10,386;CL:0002320,2.52e-10,361;CL:0000134,1.47e-09,354;CL:0000988,1.05e-07,177;CL:0000222,1.08e-07,121;CL:0002032,1.12e-07,161;CL:0000837,1.12e-07,161;CL:0000187,1.84e-07,55;CL:0000393,2.11e-07,61;CL:0000211,2.11e-07,61;CL:0000680,5.64e-07,58;CL:0000056,5.64e-07,58;CL:0000355,5.64e-07,58;CL:0002031,6.90e-07,120;CL:0000037,8.35e-07,168 | |||
|ontology_enrichment_development_v019=CL:0002057;1.04e-12;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!1.20e-18!216;UBERON:0002204!1.30e-16!167;UBERON:0002371!5.34e-15!80;UBERON:0002193!5.88e-13!112;UBERON:0002390!2.25e-12!102;UBERON:0003061!2.25e-12!102;UBERON:0001474!5.17e-12!86;UBERON:0004765!1.31e-10!101;UBERON:0001434!1.31e-10!101;UBERON:0002384!4.04e-10!375;UBERON:0000926!1.28e-09!448;UBERON:0004120!1.28e-09!448;UBERON:0006603!1.28e-09!448;UBERON:0002405!2.78e-09!115;UBERON:0004290!5.89e-08!70;UBERON:0000914!3.27e-07!83;UBERON:0002329!3.27e-07!83;UBERON:0003077!3.27e-07!83;UBERON:0003059!3.27e-07!83;UBERON:0007282!3.27e-07!83;UBERON:0009618!3.27e-07!83;UBERON:0007285!3.27e-07!83;UBERON:0004535!3.29e-07!110;UBERON:0001737!6.04e-07!9;UBERON:0001134!6.67e-07!61;UBERON:0002036!6.67e-07!61;UBERON:0003082!6.67e-07!61;UBERON:0001009!8.49e-07!113 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;6.09e-07;9!UBERON:0001557;6.09e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002204,6.06e-17,167;UBERON:0003081,8.34e-17,203;UBERON:0002371,1.58e-15,76;UBERON:0000926,2.38e-14,315;UBERON:0004120,2.38e-14,315;UBERON:0006603,2.38e-14,315;UBERON:0002405,1.77e-13,93;UBERON:0002193,3.07e-13,108;UBERON:0002390,1.12e-12,98;UBERON:0003061,1.12e-12,98;UBERON:0001474,2.23e-12,82;UBERON:0004765,4.01e-12,90;UBERON:0001434,1.03e-10,100;UBERON:0007503,7.93e-10,78;UBERON:0002384,1.07e-09,371;UBERON:0002329,3.66e-08,71;UBERON:0003059,3.66e-08,71;UBERON:0007282,3.66e-08,71;UBERON:0004290,3.66e-08,71;UBERON:0009618,3.66e-08,71;UBERON:0003077,1.34e-07,72;UBERON:0007285,1.34e-07,72;UBERON:0004535,1.48e-07,109;UBERON:0007524,3.19e-07,73;UBERON:0001009,3.98e-07,112;UBERON:0001134,4.18e-07,62;UBERON:0002036,4.18e-07,62;UBERON:0003082,4.18e-07,62;UBERON:0001737,6.04e-07,9;UBERON:0002049,8.91e-07,78;UBERON:0007798,8.91e-07,78 | |||
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| ||
|short_description=p1@YBX1 | |||
}} | }} |
Latest revision as of 03:27, 18 September 2015
Short description: | p1@YBX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_YBX1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000321358, NM_004559, uc001chs.2_5end |
EntrezGene: | YBX1 |
HGNC: | 8014 |
UniProt: | P67809 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
musculoskeletal system | 6.06e-17 | 167 |
lateral plate mesoderm | 8.34e-17 | 203 |
bone marrow | 1.58e-15 | 76 |
mesoderm | 2.38e-14 | 315 |
mesoderm-derived structure | 2.38e-14 | 315 |
presumptive mesoderm | 2.38e-14 | 315 |
immune system | 1.77e-13 | 93 |
hemolymphoid system | 3.07e-13 | 108 |
hematopoietic system | 1.12e-12 | 98 |
blood island | 1.12e-12 | 98 |
bone element | 2.23e-12 | 82 |
skeletal element | 4.01e-12 | 90 |
skeletal system | 1.03e-10 | 100 |
epithelial vesicle | 7.93e-10 | 78 |
connective tissue | 1.07e-09 | 371 |
somite | 3.66e-08 | 71 |
presomitic mesoderm | 3.66e-08 | 71 |
presumptive segmental plate | 3.66e-08 | 71 |
dermomyotome | 3.66e-08 | 71 |
trunk paraxial mesoderm | 3.66e-08 | 71 |
paraxial mesoderm | 1.34e-07 | 72 |
presumptive paraxial mesoderm | 1.34e-07 | 72 |
cardiovascular system | 1.48e-07 | 109 |
dense mesenchyme tissue | 3.19e-07 | 73 |
circulatory system | 3.98e-07 | 112 |
skeletal muscle tissue | 4.18e-07 | 62 |
striated muscle tissue | 4.18e-07 | 62 |
myotome | 4.18e-07 | 62 |
larynx | 6.04e-07 | 9 |
vasculature | 8.91e-07 | 78 |
vascular system | 8.91e-07 | 78 |