FFCP PHASE1:Hg19::chr2:28614676..28614691,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:28614676..28614691,+ to FFCP PHASE1:Hg19::chr2:28614676..28614691,+: NSchange) |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr2:28614676..28614691,+ | |||
|coexpression_cluster_id=C1148 | |||
|description=CAGE_peak_at_chr2:28614676..28614691,+ | |||
|id=chr2:28614676..28614691,+ | |||
|ontology_enrichment_celltype=CL:0002057!5.83e-28!42;CL:0000860!3.26e-27!45;CL:0000766!1.40e-21!76;CL:0000557!2.03e-17!71;CL:0002009!7.23e-17!65;CL:0002194!8.62e-16!63;CL:0000576!8.62e-16!63;CL:0000040!8.62e-16!63;CL:0000559!8.62e-16!63;CL:0000839!1.10e-15!70;CL:0000738!1.05e-13!140;CL:0000763!5.48e-13!112;CL:0000049!5.48e-13!112;CL:0002031!1.18e-08!124;CL:0002087!2.72e-08!119;CL:0000037!5.27e-08!172;CL:0000566!5.27e-08!172;CL:0002032!1.13e-07!165;CL:0000837!1.13e-07!165;CL:0002393!1.78e-07!9;CL:0002397!1.78e-07!9;CL:0000988!2.05e-07!182 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.06e-45;33!CL:0002057;1.06e-45;33!CL:0000473;1.80e-34;39!CL:0000234;1.80e-34;39!CL:0000576;1.08e-33;48!CL:0000766;1.09e-29;69!CL:0000094;1.47e-13;8!CL:0000763;1.88e-11;100!CL:0002393;2.48e-11;6!CL:0002397;2.48e-11;6!CL:0000738;6.58e-10;136!CL:0002087;6.97e-10;104!CL:0000081;2.36e-09;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,3.60e-64,42;CL:0002057,3.60e-64,42;CL:0000473,6.71e-60,48;CL:0000234,6.71e-60,48;CL:0000766,2.89e-59,72;CL:0000557,2.99e-49,67;CL:0002009,1.04e-47,61;CL:0000839,1.75e-45,66;CL:0002194,7.40e-45,59;CL:0000576,7.40e-45,59;CL:0000040,7.40e-45,59;CL:0000559,7.40e-45,59;CL:0000738,1.19e-42,136;CL:0000763,5.18e-40,108;CL:0000049,5.18e-40,108;CL:0000037,1.72e-30,168;CL:0002031,1.03e-28,120;CL:0002032,5.72e-28,161;CL:0000837,5.72e-28,161;CL:0000988,6.95e-28,177;CL:0002087,1.68e-27,115;CL:0002393,5.04e-16,9;CL:0002397,5.04e-16,9;CL:0000094,1.02e-13,8;CL:0000134,6.50e-11,354;CL:0002320,9.28e-11,361;CL:0000081,1.83e-09,11;CL:0000219,1.22e-08,386 | |||
|ontology_enrichment_development_v019=CL:0002057;1.24e-45;42!CL:0000049;2.79e-11;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!3.21e-18!102;UBERON:0003061!3.21e-18!102;UBERON:0002193!5.16e-18!112;UBERON:0002371!2.50e-15!80;UBERON:0001474!1.46e-14!86;UBERON:0002405!3.26e-13!115;UBERON:0004765!9.44e-13!101;UBERON:0001434!9.44e-13!101;UBERON:0003081!3.46e-10!216;UBERON:0002204!1.13e-08!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.39e-45,76;UBERON:0002390,1.69e-44,98;UBERON:0003061,1.69e-44,98;UBERON:0001474,1.23e-42,82;UBERON:0002193,2.60e-40,108;UBERON:0004765,7.27e-39,90;UBERON:0002405,1.31e-35,93;UBERON:0001434,2.62e-33,100;UBERON:0003081,3.24e-20,203;UBERON:0002204,4.20e-15,167;UBERON:0002384,7.31e-11,371;UBERON:0000926,1.74e-08,315;UBERON:0004120,1.74e-08,315;UBERON:0006603,1.74e-08,315 | |||
|phase1_expression=0.181678379270557,0,0.140954404095971,0,0.446961094427288,0,0,0,0.261185628199839,0.491467873003018,0.697801167972428,0.873765488520689,0.263766978228454,0.37129905888014,0,0.672325146451775,0,0,0,0.246242116153576,0.204000691244253,0.626909442956176,0.572471974262113,0.410623275218653,0.502170558379211,0,0.0821005894499457,0,4.32700704533794,1.91914699048606,2.16742572642506,0,0.6024118375565,0,0,0,0,7.75593571944628,2.20598892217156,6.51032612147556,0.447830948479849,0,0.257575567634187,3.05336301437086,3.40088349319928,2.66842467306598,3.71886459049095,4.52284676824008,10.5300166104335,3.45230870786581,2.0492856522328,8.74984250587765,7.23965929546899,6.45484683583826,4.06279459783025,4.70605848856512,4.91231070104122,14.8317499733756,3.67300670845083,7.06043859567406,8.31138263538754,0.659702600373432,3.19141852194611,2.55734850319616,4.93355705668593,3.40431134814684,2.4912889959823,3.01498398308092,2.60741459210101,5.42972111762792,3.02699751316684,3.31449872388808,5.69632297393592,10.1402537429732,4.25208599930087,10.2732736299104,8.98629049171961,4.95583746376971,4.8217676009124,6.55529310604872,3.9783335439818,5.66258876670365,0,0,0,0,0.400395987036012,0.574752439954483,0,0,0,0.587237189370939,0.764546456250458,0,0.560508562981536,0.263384084775077,0.196709770113833,0.393010762749165,1.64481199199607,0.501559486172034,0.32592226663359,2.36723902867367,1.94826728407911,0.557052284425868,2.65145316727353,2.87994062958707,2.43723477388514,0.896639238079726,0.520237390239513,0.328875809207352,0.276350017785848,0.579606171470105,1.03800594213442,0.802622484269139,0,0,0.766440987203842,1.03088233644789,0.759059076058509,1.27426165729639,0,0,0,0.127986611154418,0,0,0,0.403213486449465,0.802320587350522,1.01377082717959,0,0,0.12786256184353,0,0,0.289693037921647,0,0.486634870302636,0.472674085820339,0.443458794925128,0.263504357079378,0.130979075497713,0,0,0,0,0.132957960518865,0.715471872916026,1.14398982156026,0,1.19257444420023,0,0.694281003215189,0.56530794192401,0.419499436209906,0,0.835979866147242,0,0,0.33472061276467,0,0.760272105718513,0.976248230192678,0,0,0.17859945656816,0,0.337834441449967,0,0,0,6.58902087180316,11.6334079244498,0,0.496971951695318,0.379891534993739,0.132409180813219,0.573673241497627,0,0,2.1349799145941,0.49333509683432,0.311211035399766,0,0,0,0,0.234321431833797,0,0.570471821544449,0.149448680551801,0.117434498643765,0,0.280901613404497,0,0.122834317311768,0.516628905878827,0,0.741800787835671,0,0.718618141816238,0.168336113954066,0,0,0.877955241761676,0.30648779579902,0.45071417671979,0.340296549480063,0,0.85422955527427,1.05965950579781,0.300091096084402,0.103052529238439,0,0.37223371266318,0.337552664482532,0.292311015483596,0,0.184099797284599,0.161646056818812,0.710019185033229,0.10075209822764,0,0.386521706326594,0.818238361772504,0.286804595389004,0,0.132529768321485,0,0.207322110030741,0,0.36497735907583,4.69348596989448,0.643240938192885,0,1.39310378409594,0.721879481669586,0.473227200159376,0.168584690078102,0.723033089650446,0.992645754591546,1.08939722046203,0.71181185733329,0.404493924480493,0.196221465125346,0.38474715694639,0,1.40241773803446,0,0,0,0.982827216677626,0.590789906681404,0,0.245976877086227,0.514703430895577,0,0,0.100528972411631,0.0925884451585296,0,1.03993478527958,0,0,0.234817388471643,0.577465791044295,0.925971025153221,0.951270761172991,3.1608175918371,0.858486162094873,0,0,0,0.93733833986777,0.503946384596579,0.283550194484773,0.179117045405697,0,1.15014803749563,0,0.704387472105808,3.7319060797339,4.61183850934277,7.5745460055828,0.063497894292169,0,0,1.71072446022705,0.205654985406647,0,0,0.224262168690721,0,0.07333828582095,0,0,0,0.26593811658487,0,0,0,1.3321108950805,0.428933980974443,1.08524321078289,0.823240336780769,0,0.355391948742546,0,0.301439377059586,0,0.099972991182057,4.86495122564762,1.00451418286425,0,0,0,0,0,0.410952645100767,0.179060963239896,0.224170287987055,1.18218456121156,0.431255149719035,1.41177339907723,0,0,0,0.335032530668698,0.637938751653163,5.24304916763028,2.99161459204025,9.53155680902882,0.49076596687656,1.00034104211935,0,0,0.535286966391485,0,0.234282829985426,0,0,0,0,0.368738337083406,0.347534457872331,0.195801157462741,0,1.6541442089831,2.5885704098234,3.20182673410333,3.03127571446259,3.32870879020994,0.604780586659361,0.248107807818777,0.153461973288062,0.841980283299221,0.384417447767103,0.511707249066704,0,1.48418066444991,0,0.177561725313127,0.246381468041427,1.03850885836724,0.581051892299796,0.604297247958111,0.200506470303285,0.0920809889358963,0.574072240823034,0,0.655622074797121,0,0.0770153371044148,0.784349769176855,0,0.211103257785751,0,0,0.215915916102139,0,0.812839312631559,0.501689773854853,0.764628819135115,0.831076008928724,1.34324852833307,0,0,0,0,0,1.54561517471583,0.366277859273374,0.41254749960294,0.574265537996172,0,0,0.48335359146061,0.462145851343933,0.460511024178389,0.413509717453592,1.18162269355101,0.145016693914229,0.0852266274161009,0.356128142586949,0.165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|phase1_expression=0.181678379270557,0,0.140954404095971,0,0.446961094427288,0,0,0,0.261185628199839,0.491467873003018,0.697801167972428,0.873765488520689,0.263766978228454,0.37129905888014,0,0.672325146451775,0,0,0,0.246242116153576,0.204000691244253,0.626909442956176,0.572471974262113,0.410623275218653,0.502170558379211,0,0.0821005894499457,0,4.32700704533794,1.91914699048606,2.16742572642506,0,0.6024118375565,0,0,0,0,7.75593571944628,2.20598892217156,6.51032612147556,0.447830948479849,0,0.257575567634187,3.05336301437086,3.40088349319928,2.66842467306598,3.71886459049095,4.52284676824008,10.5300166104335,3.45230870786581,2.0492856522328,8.74984250587765,7.23965929546899,6.45484683583826,4.06279459783025,4.70605848856512,4.91231070104122,14.8317499733756,3.67300670845083,7.06043859567406,8.31138263538754,0.659702600373432,3.19141852194611,2.55734850319616,4.93355705668593,3.40431134814684,2.4912889959823,3.01498398308092,2.60741459210101,5.42972111762792,3.02699751316684,3.31449872388808,5.69632297393592,10.1402537429732,4.25208599930087,10.2732736299104,8.98629049171961,4.95583746376971,4.8217676009124,6.55529310604872,3.9783335439818,5.66258876670365,0,0,0,0,0.400395987036012,0.574752439954483,0,0,0,0.587237189370939,0.764546456250458,0,0.560508562981536,0.263384084775077,0.196709770113833,0.393010762749165,1.64481199199607,0.501559486172034,0.32592226663359,2.36723902867367,1.94826728407911,0.557052284425868,2.65145316727353,2.87994062958707,2.43723477388514,0.896639238079726,0.520237390239513,0.328875809207352,0.276350017785848,0.579606171470105,1.03800594213442,0.802622484269139,0,0,0.766440987203842,1.03088233644789,0.759059076058509,1.27426165729639,0,0,0,0.127986611154418,0,0,0,0.403213486449465,0.802320587350522,1.01377082717959,0,0,0.12786256184353,0,0,0.289693037921647,0,0.486634870302636,0.472674085820339,0.443458794925128,0.263504357079378,0.130979075497713,0,0,0,0,0.132957960518865,0.715471872916026,1.14398982156026,0,1.19257444420023,0,0.694281003215189,0.56530794192401,0.419499436209906,0,0.835979866147242,0,0,0.33472061276467,0,0.760272105718513,0.976248230192678,0,0,0.17859945656816,0,0.337834441449967,0,0,0,6.58902087180316,11.6334079244498,0,0.496971951695318,0.379891534993739,0.132409180813219,0.573673241497627,0,0,2.1349799145941,0.49333509683432,0.311211035399766,0,0,0,0,0.234321431833797,0,0.570471821544449,0.149448680551801,0.117434498643765,0,0.280901613404497,0,0.122834317311768,0.516628905878827,0,0.741800787835671,0,0.718618141816238,0.168336113954066,0,0,0.877955241761676,0.30648779579902,0.45071417671979,0.340296549480063,0,0.85422955527427,1.05965950579781,0.300091096084402,0.103052529238439,0,0.37223371266318,0.337552664482532,0.292311015483596,0,0.184099797284599,0.161646056818812,0.710019185033229,0.10075209822764,0,0.386521706326594,0.818238361772504,0.286804595389004,0,0.132529768321485,0,0.207322110030741,0,0.36497735907583,4.69348596989448,0.643240938192885,0,1.39310378409594,0.721879481669586,0.473227200159376,0.168584690078102,0.723033089650446,0.992645754591546,1.08939722046203,0.71181185733329,0.404493924480493,0.196221465125346,0.38474715694639,0,1.40241773803446,0,0,0,0.982827216677626,0.590789906681404,0,0.245976877086227,0.514703430895577,0,0,0.100528972411631,0.0925884451585296,0,1.03993478527958,0,0,0.234817388471643,0.577465791044295,0.925971025153221,0.951270761172991,3.1608175918371,0.858486162094873,0,0,0,0.93733833986777,0.503946384596579,0.283550194484773,0.179117045405697,0,1.15014803749563,0,0.704387472105808,3.7319060797339,4.61183850934277,7.5745460055828,0.063497894292169,0,0,1.71072446022705,0.205654985406647,0,0,0.224262168690721,0,0.07333828582095,0,0,0,0.26593811658487,0,0,0,1.3321108950805,0.428933980974443,1.08524321078289,0.823240336780769,0,0.355391948742546,0,0.301439377059586,0,0.099972991182057,4.86495122564762,1.00451418286425,0,0,0,0,0,0.410952645100767,0.179060963239896,0.224170287987055,1.18218456121156,0.431255149719035,1.41177339907723,0,0,0,0.335032530668698,0.637938751653163,5.24304916763028,2.99161459204025,9.53155680902882,0.49076596687656,1.00034104211935,0,0,0.535286966391485,0,0.234282829985426,0,0,0,0,0.368738337083406,0.347534457872331,0.195801157462741,0,1.6541442089831,2.5885704098234,3.20182673410333,3.03127571446259,3.32870879020994,0.604780586659361,0.248107807818777,0.153461973288062,0.841980283299221,0.384417447767103,0.511707249066704,0,1.48418066444991,0,0.177561725313127,0.246381468041427,1.03850885836724,0.581051892299796,0.604297247958111,0.200506470303285,0.0920809889358963,0.574072240823034,0,0.655622074797121,0,0.0770153371044148,0.784349769176855,0,0.211103257785751,0,0,0.215915916102139,0,0.812839312631559,0.501689773854853,0.764628819135115,0.831076008928724,1.34324852833307,0,0,0,0,0,1.54561517471583,0.366277859273374,0.41254749960294,0.574265537996172,0,0,0.48335359146061,0.462145851343933,0.460511024178389,0.413509717453592,1.18162269355101,0.145016693914229,0.0852266274161009,0.356128142586949,0.165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| ||
|short_description=p@chr2:28614676..28614691,+ | |||
}} | }} |
Latest revision as of 09:20, 29 July 2015
Short description: | p@chr2:28614676..28614691, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:28614676..28614691, + |
Coexpression cluster: | C1148_CD14_Eosinophils_Mast_Neutrophils_CD14CD16_blood_Basophils |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 3.60e-64 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.60e-64 | 42 |
defensive cell | 6.71e-60 | 48 |
phagocyte | 6.71e-60 | 48 |
myeloid leukocyte | 2.89e-59 | 72 |
granulocyte monocyte progenitor cell | 2.99e-49 | 67 |
macrophage dendritic cell progenitor | 1.04e-47 | 61 |
myeloid lineage restricted progenitor cell | 1.75e-45 | 66 |
monopoietic cell | 7.40e-45 | 59 |
monocyte | 7.40e-45 | 59 |
monoblast | 7.40e-45 | 59 |
promonocyte | 7.40e-45 | 59 |
leukocyte | 1.19e-42 | 136 |
myeloid cell | 5.18e-40 | 108 |
common myeloid progenitor | 5.18e-40 | 108 |
hematopoietic stem cell | 1.72e-30 | 168 |
hematopoietic lineage restricted progenitor cell | 1.03e-28 | 120 |
hematopoietic oligopotent progenitor cell | 5.72e-28 | 161 |
hematopoietic multipotent progenitor cell | 5.72e-28 | 161 |
hematopoietic cell | 6.95e-28 | 177 |
nongranular leukocyte | 1.68e-27 | 115 |
intermediate monocyte | 5.04e-16 | 9 |
CD14-positive, CD16-positive monocyte | 5.04e-16 | 9 |
granulocyte | 1.02e-13 | 8 |
mesenchymal cell | 6.50e-11 | 354 |
connective tissue cell | 9.28e-11 | 361 |
blood cell | 1.83e-09 | 11 |
motile cell | 1.22e-08 | 386 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 3.39e-45 | 76 |
hematopoietic system | 1.69e-44 | 98 |
blood island | 1.69e-44 | 98 |
bone element | 1.23e-42 | 82 |
hemolymphoid system | 2.60e-40 | 108 |
skeletal element | 7.27e-39 | 90 |
immune system | 1.31e-35 | 93 |
skeletal system | 2.62e-33 | 100 |
lateral plate mesoderm | 3.24e-20 | 203 |
musculoskeletal system | 4.20e-15 | 167 |
connective tissue | 7.31e-11 | 371 |
mesoderm | 1.74e-08 | 315 |
mesoderm-derived structure | 1.74e-08 | 315 |
presumptive mesoderm | 1.74e-08 | 315 |