FFCP PHASE1:Hg19::chr5:95997798..95997829,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr5:95997798..95997829,+ to FFCP PHASE1:Hg19::chr5:95997798..95997829,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=831 | |EntrezGene=831 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1515 | |HGNC=1515 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=20bp_to_ENST00000508830_5end | |||
|cluster_id=chr5:95997798..95997829,+ | |||
|description=CAGE_peak_8_at_CAST_5end | |||
|id=chr5:95997798..95997829,+ | |||
|ontology_enrichment_celltype=CL:0002057!2.75e-23!42;CL:0000860!4.92e-21!45;CL:0000766!9.87e-21!76;CL:0000557!4.49e-20!71;CL:0002194!9.38e-20!63;CL:0000576!9.38e-20!63;CL:0000040!9.38e-20!63;CL:0000559!9.38e-20!63;CL:0000839!3.39e-19!70;CL:0002009!1.59e-18!65;CL:0000048!2.16e-07!430;CL:0000723!4.71e-07!436 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.55e-18;33!CL:0002057;1.55e-18;33!CL:0000473;1.35e-15;39!CL:0000234;1.35e-15;39!CL:0000576;2.72e-15;48!CL:0000766;6.00e-12;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.09e-23,42;CL:0002057,1.09e-23,42;CL:0000473,2.33e-23,48;CL:0000234,2.33e-23,48;CL:0000766,3.50e-22,72;CL:0000557,3.24e-21,67;CL:0002194,3.36e-21,59;CL:0000576,3.36e-21,59;CL:0000040,3.36e-21,59;CL:0000559,3.36e-21,59;CL:0000839,8.83e-21,66;CL:0002009,1.19e-19,61;CL:0000048,2.38e-08,427;CL:0000723,4.47e-08,433 | |||
|ontology_enrichment_development_v019=CL:0002057;2.54e-17;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002204!3.23e-19!167;UBERON:0000926!1.27e-18!448;UBERON:0004120!1.27e-18!448;UBERON:0006603!1.27e-18!448;UBERON:0002371!2.21e-18!80;UBERON:0001474!1.84e-16!86;UBERON:0004765!3.10e-15!101;UBERON:0001434!3.10e-15!101;UBERON:0000467!1.79e-14!625;UBERON:0000480!2.26e-14!626;UBERON:0000468!2.40e-14!659;UBERON:0003081!1.90e-13!216;UBERON:0002390!5.91e-13!102;UBERON:0003061!5.91e-13!102;UBERON:0000062!1.30e-12!511;UBERON:0002193!3.83e-12!112;UBERON:0002405!3.68e-11!115;UBERON:0002050!1.82e-09!605;UBERON:0005423!1.82e-09!605;UBERON:0000923!2.55e-09!604;UBERON:0005291!2.55e-09!604;UBERON:0006598!2.55e-09!604;UBERON:0002532!2.55e-09!604;UBERON:0000922!2.94e-08!612 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,1.90e-20,315;UBERON:0004120,1.90e-20,315;UBERON:0006603,1.90e-20,315;UBERON:0002204,9.20e-20,167;UBERON:0002371,5.70e-19,76;UBERON:0001474,1.11e-16,82;UBERON:0004765,2.39e-16,90;UBERON:0001434,1.11e-15,100;UBERON:0003081,3.22e-15,203;UBERON:0002405,4.72e-14,93;UBERON:0002390,4.31e-13,98;UBERON:0003061,4.31e-13,98;UBERON:0002193,3.90e-12,108;UBERON:0002050,9.84e-11,564;UBERON:0000923,1.31e-10,560;UBERON:0010316,1.31e-10,560;UBERON:0005291,1.31e-10,560;UBERON:0006598,1.31e-10,560;UBERON:0010317,1.31e-10,560;UBERON:0002532,1.31e-10,560;UBERON:0005423,1.14e-08,581;UBERON:0000922,1.62e-07,592 | |||
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| ||
|short_description=p8@CAST | |||
}} | }} |
Latest revision as of 08:56, 19 September 2015
Short description: | p8@CAST |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_CAST_5end |
Coexpression cluster: | NA |
Association with transcript: | 20bp_to_ENST00000508830_5end |
EntrezGene: | CAST |
HGNC: | 1515 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.09e-23 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.09e-23 | 42 |
defensive cell | 2.33e-23 | 48 |
phagocyte | 2.33e-23 | 48 |
myeloid leukocyte | 3.50e-22 | 72 |
granulocyte monocyte progenitor cell | 3.24e-21 | 67 |
monopoietic cell | 3.36e-21 | 59 |
monocyte | 3.36e-21 | 59 |
monoblast | 3.36e-21 | 59 |
promonocyte | 3.36e-21 | 59 |
myeloid lineage restricted progenitor cell | 8.83e-21 | 66 |
macrophage dendritic cell progenitor | 1.19e-19 | 61 |
multi fate stem cell | 2.38e-08 | 427 |
somatic stem cell | 4.47e-08 | 433 |
Ontology term | p-value | n |
---|---|---|
mesoderm | 1.90e-20 | 315 |
mesoderm-derived structure | 1.90e-20 | 315 |
presumptive mesoderm | 1.90e-20 | 315 |
musculoskeletal system | 9.20e-20 | 167 |
bone marrow | 5.70e-19 | 76 |
bone element | 1.11e-16 | 82 |
skeletal element | 2.39e-16 | 90 |
skeletal system | 1.11e-15 | 100 |
lateral plate mesoderm | 3.22e-15 | 203 |
immune system | 4.72e-14 | 93 |
hematopoietic system | 4.31e-13 | 98 |
blood island | 4.31e-13 | 98 |
hemolymphoid system | 3.90e-12 | 108 |
embryonic structure | 9.84e-11 | 564 |
germ layer | 1.31e-10 | 560 |
germ layer / neural crest | 1.31e-10 | 560 |
embryonic tissue | 1.31e-10 | 560 |
presumptive structure | 1.31e-10 | 560 |
germ layer / neural crest derived structure | 1.31e-10 | 560 |
epiblast (generic) | 1.31e-10 | 560 |
developing anatomical structure | 1.14e-08 | 581 |
embryo | 1.62e-07 | 592 |