FFCP PHASE1:Hg19::chr9:130540938..130540952,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr9:130540938..130540952,- to FFCP PHASE1:Hg19::chr9:130540938..130540952,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10044 | |EntrezGene=10044 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16884 | |HGNC=16884 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=21bp_to_ENST00000473535,uc004bsd.1_5end | |||
|cluster_id=chr9:130540938..130540952,- | |||
|coexpression_cluster_id=C299 | |||
|description=CAGE_peak_2_at_SH2D3C_5end | |||
|id=chr9:130540938..130540952,- | |||
|ontology_enrichment_celltype=CL:0000037!1.05e-73!172;CL:0000566!1.05e-73!172;CL:0002032!7.13e-69!165;CL:0000837!7.13e-69!165;CL:0000988!1.48e-67!182;CL:0000738!1.29e-66!140;CL:0002087!1.19e-58!119;CL:0002031!4.00e-57!124;CL:0000763!2.46e-44!112;CL:0000049!2.46e-44!112;CL:0000766!4.01e-43!76;CL:0002057!3.63e-36!42;CL:0000839!3.80e-36!70;CL:0000557!6.87e-36!71;CL:0002194!4.87e-34!63;CL:0000576!4.87e-34!63;CL:0000040!4.87e-34!63;CL:0000559!4.87e-34!63;CL:0002009!2.24e-33!65;CL:0000860!2.29e-32!45;CL:0000542!1.46e-20!53;CL:0000051!1.46e-20!53;CL:0000838!7.63e-20!52;CL:0000945!5.04e-14!24;CL:0000826!5.04e-14!24;CL:0000134!1.60e-11!358;CL:0002320!3.78e-11!365;CL:0002393!8.81e-10!9;CL:0002397!8.81e-10!9;CL:0000236!1.19e-09!14;CL:0000094!8.18e-09!8;CL:0000791!4.31e-08!18;CL:0000789!4.31e-08!18;CL:0002420!4.31e-08!18;CL:0002419!4.31e-08!18;CL:0000790!4.31e-08!18;CL:0000219!3.02e-07!390 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.14e-36;33!CL:0002057;2.14e-36;33!CL:0000576;2.84e-30;48!CL:0000473;1.47e-29;39!CL:0000234;1.47e-29;39!CL:0000766;9.11e-25;69!CL:0002087;2.07e-18;104!CL:0000763;1.57e-17;100!CL:0000738;1.04e-15;136!CL:0000945;1.30e-15;24!CL:0000094;3.43e-12;8!CL:0000988;4.89e-12;177!CL:0000236;6.68e-11;13!CL:0002393;1.92e-09;6!CL:0002397;1.92e-09;6!CL:0000081;2.98e-08;11!CL:0000542;6.33e-08;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,9.30e-80,168;CL:0000988,7.46e-74,177;CL:0002032,5.01e-73,161;CL:0000837,5.01e-73,161;CL:0000738,1.16e-72,136;CL:0002087,1.38e-64,115;CL:0000766,1.67e-59,72;CL:0000763,3.07e-57,108;CL:0000049,3.07e-57,108;CL:0002031,1.87e-56,120;CL:0000860,2.00e-52,42;CL:0002057,2.00e-52,42;CL:0002194,3.73e-50,59;CL:0000576,3.73e-50,59;CL:0000040,3.73e-50,59;CL:0000559,3.73e-50,59;CL:0000473,5.46e-50,48;CL:0000234,5.46e-50,48;CL:0002009,6.61e-48,61;CL:0000557,8.62e-48,67;CL:0000839,1.16e-46,66;CL:0000134,1.23e-20,354;CL:0002320,1.36e-19,361;CL:0000219,5.76e-16,386;CL:0000945,9.39e-16,24;CL:0000826,9.39e-16,24;CL:0000542,8.02e-14,53;CL:0000051,8.02e-14,53;CL:0002393,1.30e-13,9;CL:0002397,1.30e-13,9;CL:0000838,5.15e-13,52;CL:0000094,3.40e-12,8;CL:0000236,6.23e-12,14;CL:0000034,8.11e-12,441;CL:0000048,1.15e-11,427;CL:0000723,4.37e-11,433;CL:0000081,2.96e-08,11 | |||
|ontology_enrichment_development_v019=CL:0002057;1.62e-37;42!CL:0000049;2.18e-16;108!CL:0000051;6.33e-08;53 | |||
|ontology_enrichment_disease=DOID:2531!2.87e-08!51;DOID:0060083!2.87e-08!51;DOID:1240!3.10e-07!39 | |||
|ontology_enrichment_disease_v019=DOID:8692;1.57e-07;31 | |||
|ontology_enrichment_disease_v019_2=DOID:1240,5.39e-08,39;DOID:8692,5.81e-08,31;DOID:2531,5.47e-07,51;DOID:0060083,5.47e-07,51 | |||
|ontology_enrichment_uberon=UBERON:0002390!1.07e-42!102;UBERON:0003061!1.07e-42!102;UBERON:0002193!3.53e-38!112;UBERON:0002371!1.31e-31!80;UBERON:0001474!2.46e-28!86;UBERON:0002405!5.04e-23!115;UBERON:0004765!4.46e-21!101;UBERON:0001434!4.46e-21!101;UBERON:0007023!3.38e-17!115;UBERON:0002384!4.69e-10!375;UBERON:0003081!1.08e-09!216;UBERON:0000178!2.29e-08!15;UBERON:0000179!2.29e-08!15;UBERON:0000463!2.29e-08!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.26e-12;15!UBERON:0000179;2.26e-12;15!UBERON:0000463;2.26e-12;15!UBERON:0002390;6.16e-10;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.70e-56,98;UBERON:0003061,2.70e-56,98;UBERON:0002193,8.18e-52,108;UBERON:0002371,2.20e-43,76;UBERON:0002405,3.86e-40,93;UBERON:0001474,9.24e-39,82;UBERON:0004765,1.42e-33,90;UBERON:0001434,2.70e-28,100;UBERON:0003081,3.42e-18,203;UBERON:0002384,3.52e-18,371;UBERON:0000178,2.37e-12,15;UBERON:0000179,2.37e-12,15;UBERON:0000463,2.37e-12,15;UBERON:0002204,1.58e-10,167 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.37544130346312,1.64201178899891,1.41679406364623,27.9288636562722,11.8987113410136,13.0045543585504,0,0,0,2.32401601740905,0.710846162437108,4.9912074686924,17.1738576644882,21.8593447742454,24.5222283908913,0.447830948479849,0.647787332037959,0.257575567634187,22.9729217271712,20.4053009591957,22.8029017516547,32.0752070929845,17.6802191849385,22.9182714462377,9.78154133895312,9.99026755463492,8.98632473576624,16.2030469946211,27.7558413941045,18.9597081232078,26.9186545545925,12.0078706025452,8.7642158933583,18.3650335422542,13.799948164272,22.3767994029664,9.23583640522805,11.369428484433,11.9342930149154,11.0279510678862,7.37600792098482,6.85104473895132,11.0549412712967,12.5155900420848,13.4657083717172,6.05399502633369,9.20694089968912,10.4432587855492,83.2345828069051,67.8207716888489,52.6243200226023,34.484889761974,29.7350247826183,29.4127823655657,78.9485300163258,93.0930049291742,91.1494127285523,8.79981222306614,3.27683166757279,5.33705552318133,8.53460445133014,6.4063357925762,4.59801951963587,5.94940385506376,2.86216126360609,1.70763890732835,4.11066032559657,1.52909291250092,9.25199300053181,2.80254281490768,9.2184429671277,0.590129310341499,1.17903228824749,0.411202997999018,3.00935691703221,0.32592226663359,0.946895611469467,3.89653456815823,2.56244050835899,0.883817722424512,1.32920336750173,1.89562704635511,1.40900451698243,1.69077151827842,3.61763390128087,3.03985019564433,4.63684937176084,0.741432815810302,1.07016331235885,1.04535523804977,3.05935225283429,0.383220493601921,0,1.01207876807801,2.54852331459277,1.30216690771284,0.950452044448374,3.312652619711,2.17577238962511,6.24653632761729,3.07810427657222,0.821127996921047,1.00803371612366,0.267440195783507,0.579297615531196,0,0,0,0,0,0,0,0,0,0,0,0.851363990735132,0,0,6.49094787309367,7.13931922926996,5.18536046023574,18.840759320122,22.307801520425,31.2024301116835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,164.725521795079,104.700671320048,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26755034821831,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738651018262192,2.10603838625314,2.22946743433092,0,0,0,0,0,0,2.46331618947972,5.89924507888615,0.207328115540772,0.144119953416961,0.50496973370552,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2162378064119,0,0,0,0,0,0,0,0,0.560425719967636,2.1673383622212,0.862510299438069,2.18183161675572,0,0,0,0,0,156.542468004961,113.681354497529,82.054271660335,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0.587403472388222,0,15.0940659069708,26.1014182990526,14.1947651878581,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438519753291869,0.261435451024901,0,0,0,0.412164046590889,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0.372158369359667,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.92947049429925,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,19.7904567600546,20.6452045928441,29.0520065458823,15.4850654047563,27.1499100236888,26.5874057589014,21.0612260522865,23.0006301125338,0,0,0,13.0062222588003,3.60673032441112,0.782560276832555,0,3.39284931435788,18.3845155327072,13.9704564597763,0,4.49275484981534,31.0399163485141,0,2.50634477090067,11.0039655571042,0.802940375518498,5.85219150854038,2.98092366383228,1.37402137902306,1.84344458585075,1.3420566473545,1.50164227540718,0.390776190804081,0,0,3.78637949866376,2.33150377598474,0,0,0.146508179271894,0,1.44876399560722,0,0,0,0,0,0.140669416410513,0,0,0,0.398495976502139,1.93398740871803,0,0,2.46169610922139,0,0,0,2.04628948090749,0,21.5534783112246,0,0.969332746095218,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0.361789315876224,0,0.221158519862449,0,0.219385397153973,0,0,0.153900517007594,0,0,0,0,0.31900115973192,0,1.06606955203727,0,20.8783741005383,1.82832850090172,0,0,0,0,0,0,0,0,0,0.995261931078505,0.0884575645033392,0.611030144933625,0,0,0,0.539209063845416,0,0.234264445725339,0.547364367646998,0,0,0,3.62972148145992,0.61214552326098,1.89559738885464,0,0,0,0,0,0,0,0,0,0,0,0.52418000472609,0,0,0,0,0.387956065953678,0,0.225980740780532,0,0,0.316553979779393,0,0,0.85381197895741,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,11.4971929260275,0,0,0.837847203816763,1.14580212005842,0.717873024576814,0.798716001995964,3.004582336956,0.89268582976749,1.41085292222125,0,0,0,0,0,0,0.338693328263138,0,0.136203406111576,0,0,0,0.449947783103001,0,0.607495566580247,0,0.0788057072991982,0.577000469484979,0,0,0,2.1440859791201,1.32418394073086,0,0,0,0,0,0.492555124496034,0,0,0,1.32506888912221,0.129282956361551,0.13223260174269,0,0,1.81538601365081,0.943225830597996,2.07119527673598,3.47316215268366,1.18566979138767,2.43585196761792,0,0,0,0,0,0,0,0.244052529803926,0,0.573409195690071,0.221858103073705,1.1177352529449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|short_description=p2@SH2D3C | |||
}} | }} |
Latest revision as of 05:13, 25 September 2015
Short description: | p2@SH2D3C |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SH2D3C_5end |
Coexpression cluster: | C299_CD14CD16_Eosinophils_Neutrophils_CD14_Whole_Basophils_blood |
Association with transcript: | 21bp_to_ENST00000473535, uc004bsd.1_5end |
EntrezGene: | SH2D3C |
HGNC: | 16884 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.70e-56 | 98 |
blood island | 2.70e-56 | 98 |
hemolymphoid system | 8.18e-52 | 108 |
bone marrow | 2.20e-43 | 76 |
immune system | 3.86e-40 | 93 |
bone element | 9.24e-39 | 82 |
skeletal element | 1.42e-33 | 90 |
skeletal system | 2.70e-28 | 100 |
lateral plate mesoderm | 3.42e-18 | 203 |
connective tissue | 3.52e-18 | 371 |
blood | 2.37e-12 | 15 |
haemolymphatic fluid | 2.37e-12 | 15 |
organism substance | 2.37e-12 | 15 |
musculoskeletal system | 1.58e-10 | 167 |
Ontology term | p-value | n |
---|---|---|
leukemia | 5.39e-08 | 39 |
myeloid leukemia | 5.81e-08 | 31 |
hematologic cancer | 5.47e-07 | 51 |
immune system cancer | 5.47e-07 | 51 |