FFCP PHASE1:Hg19::chrX:135614355..135614362,+: Difference between revisions
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=51442 | |EntrezGene=51442 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20985 | |HGNC=20985 | ||
|TSSclassifier=strong | |||
|UniProt=Q99990,E9PHC2 | |UniProt=Q99990,E9PHC2 | ||
|association_with_transcript=44bp_to_ENST00000370634,ENST00000430688,NM_016267,uc004ezy.2_5end | |||
|cluster_id=chrX:135614355..135614362,+ | |||
|coexpression_cluster_id=C83 | |||
|description=CAGE_peak_5_at_VGLL1_5end | |||
|id=chrX:135614355..135614362,+ | |||
|ontology_enrichment_celltype=CL:0000066!2.09e-17!254;CL:0002076!7.33e-17!43;CL:0000223!1.13e-13!59;CL:0002251!1.07e-08!21;CL:0000349!1.24e-08!3;CL:0002577!1.24e-08!3;CL:0000039!2.15e-08!7;CL:0000586!2.15e-08!7;CL:0002541!3.02e-08!3;CL:0000239!1.22e-07!3;CL:1000615!1.22e-07!3;CL:0002306!1.22e-07!3;CL:0002159!2.46e-07!13;CL:0002231!6.02e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000349;2.82e-31;19!CL:0002577;6.17e-17;3!CL:0002541;3.00e-16;3!CL:0002536;1.46e-11;2!CL:1000415;9.17e-11;2!CL:0002537;7.62e-10;5!CL:0000039;9.99e-08;7!CL:0000586;9.99e-08;7!CL:0000239;1.28e-07;3!CL:1000615;1.28e-07;3!CL:0002306;1.28e-07;3!CL:0002681;7.60e-07;12!CL:0002584;7.60e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,3.33e-31,19;CL:0002577,4.99e-17,3;CL:0002541,3.51e-16,3;CL:0002536,1.95e-11,2;CL:1000415,1.02e-10,2;CL:0002537,7.86e-10,5;CL:0000039,1.00e-07,7;CL:0000586,1.00e-07,7;CL:0000239,1.04e-07,3;CL:1000615,1.04e-07,3;CL:0002306,1.04e-07,3;CL:0000066,2.61e-07,253;CL:0002681,6.27e-07,12;CL:0002584,6.27e-07,12 | |||
|ontology_enrichment_development_v019=UBERON:0003124;7.15e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1799;5.89e-07;1!DOID:10165;5.89e-07;1!DOID:1798;5.89e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:1799,5.90e-07,1;DOID:10165,5.90e-07,1;DOID:1798,5.90e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0005631!6.65e-24!14;UBERON:0000158!6.65e-24!14;UBERON:0003124!1.53e-17!7;UBERON:0000478!7.07e-15!24;UBERON:0004119!6.24e-12!169;UBERON:0000925!6.24e-12!169;UBERON:0006595!6.24e-12!169;UBERON:0001987!5.40e-11!4;UBERON:0004340!5.40e-11!4;UBERON:0006554!2.19e-10!44;UBERON:0004923!4.36e-10!57;UBERON:0001008!4.62e-10!45;UBERON:0000305!7.59e-09!7;UBERON:0000161!1.40e-08!35;UBERON:0000077!2.73e-08!130;UBERON:0000476!3.02e-08!3;UBERON:0000920!3.02e-08!3;UBERON:0002294!3.50e-08!7;UBERON:0001173!3.50e-08!7;UBERON:0004912!3.50e-08!7;UBERON:0000344!7.04e-08!12;UBERON:0000995!8.78e-08!21;UBERON:0004871!1.13e-07!8;UBERON:0006853!1.22e-07!3;UBERON:0007685!1.22e-07!3;UBERON:0004134!1.22e-07!3;UBERON:0002110!1.97e-07!3;UBERON:0006242!1.97e-07!3;UBERON:0000365!2.10e-07!5;UBERON:0005795!2.41e-07!22;UBERON:0003975!2.41e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0000478;2.89e-34;24!UBERON:0005631;4.81e-32;10!UBERON:0000158;4.81e-32;10!UBERON:0001987;4.33e-22;4!UBERON:0000305;2.00e-18;7!UBERON:0003124;3.00e-16;3!UBERON:0000920;3.00e-16;3!UBERON:0006853;1.28e-07;3!UBERON:0007685;1.28e-07;3!UBERON:0004134;1.28e-07;3!UBERON:0002110;1.85e-07;3!UBERON:0002294;4.70e-07;7!UBERON:0001173;4.70e-07;7!UBERON:0001225;7.60e-07;12!UBERON:0008987;7.60e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.20e-51,14;UBERON:0000158,1.20e-51,14;UBERON:0003124,1.38e-36,7;UBERON:0000478,3.87e-34,24;UBERON:0001987,3.41e-22,4;UBERON:0004340,3.41e-22,4;UBERON:0000305,2.53e-18,7;UBERON:0000920,3.51e-16,3;UBERON:0004871,5.22e-16,8;UBERON:0004923,1.78e-12,66;UBERON:0000995,1.50e-11,21;UBERON:0005795,5.53e-11,22;UBERON:0003975,5.53e-11,22;UBERON:0004175,1.49e-09,25;UBERON:0006853,1.04e-07,3;UBERON:0007685,1.04e-07,3;UBERON:0004134,1.04e-07,3;UBERON:0006554,1.53e-07,47;UBERON:0002110,1.98e-07,3;UBERON:0006242,1.98e-07,3;UBERON:0001008,2.36e-07,48;UBERON:0001225,6.27e-07,12;UBERON:0008987,6.27e-07,12 | |||
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|phase1_expression=0,0,0,0,0,0,0,0,0,0.982935746006035,2.79120467188971,4.15038607047327,2.37390280405608,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309632246632152,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.728590576585084,2.96627554227544,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872188104285069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773043412653187,0,0.286804595389004,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10689594688802,0,0.219500570817251,1.1240175325762,0.100528972411631,0.277765335475589,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.54691357169389,4.99306318531491,4.5358543999452,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0.200506470303285,0.460404944679482,0,0,0,1.80479845162965,0.924184045252977,0,0,0,0,0,0,0,0,0,2.80363900349542,1.66215201785745,0.223874754722178,0,0,0,0,0,2.47298427954533,0,0,0.574265537996172,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,2.44773882019626,0.43050537267123,3.36942951335251,0.886860307073351,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37428108081644,0,0,0,0,2.3874448473769,4.75143489332222,1.22864280839693,0,0,0,0,0,0,0,0,0,0,0,4.40354920621902,0,0,0.591860433821602,0,0,0,0,0,0.260427761085233,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153900517007594,0,11.2976313150149,22.3496534580333,8.80043712568265,4.14701507651495,1.19076871422421,3.73124343213044,0,0,0,0,0,0,0,0,0,3.59112177950125,2.68570835724488,0,0,0,0,0,0,0,0,0,0,0,2.34797542718508,0,0,0,0,0,0,0,0,0,0,0,0.284609546029793,0,1.56203764501618,0.195984794828755,3.22119064347489,0,0,0,0,0,0,0,0.225980740780532,0,0,0,1.17330829640882,1.52301758477914,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.798716001995964,0.429226048136571,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236417121897595,0.314727528809989,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.34333520085005,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139879507719444,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.917142992608395,0.115525666150338,0,0,0,0,0,0,13.3572414185525,0,0.591424344868181,0,0,0,0,0,0,0,0,2.6830109804315,0,0,0,0,6.47527302187263,0,0,0,0,0,0,0.39246546425257,0,1.96190514319652,0,0,0,0,0,0,0,0,0.207216164163037,0,0,0.430227358820278,0,0,0,2.97838929107265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245148321753905,0,0,0,0,0,0,0,0,0,0.352894871715692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.203977659483963,0,0.0918948995348449,0,0,0,0,0,0,0,0,0,0,0,0,0,0.342233301085281,0.134704106029175,0.0717222053926763,0,0.0814032686109745,0,0,0,2.34640942403454,0,0,0,0,0 | ||
|short_description=p5@VGLL1 | |||
}} | }} |
Latest revision as of 14:48, 19 September 2015
Short description: | p5@VGLL1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_VGLL1_5end |
Coexpression cluster: | C83_choriocarcinoma_pancreatic_placenta_chorionic_HES3GFP_testicular_amniotic |
Association with transcript: | 44bp_to_ENST00000370634, ENST00000430688, NM_016267, uc004ezy.2_5end |
EntrezGene: | VGLL1 |
HGNC: | 20985 |
UniProt: | Q99990E9PHC2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 3.33e-31 | 19 |
placental epithelial cell | 4.99e-17 | 3 |
chorionic membrane mesenchymal stem cell | 3.51e-16 | 3 |
amniotic epithelial cell | 1.95e-11 | 2 |
epithelial cell of gall bladder | 1.02e-10 | 2 |
amnion mesenchymal stem cell | 7.86e-10 | 5 |
germ line cell | 1.00e-07 | 7 |
germ cell | 1.00e-07 | 7 |
brush border epithelial cell | 1.04e-07 | 3 |
kidney cortex tubule cell | 1.04e-07 | 3 |
epithelial cell of proximal tubule | 1.04e-07 | 3 |
epithelial cell | 2.61e-07 | 253 |
kidney cortical cell | 6.27e-07 | 12 |
renal cortical epithelial cell | 6.27e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 1.20e-51 | 14 |
membranous layer | 1.20e-51 | 14 |
chorion | 1.38e-36 | 7 |
extraembryonic structure | 3.87e-34 | 24 |
placenta | 3.41e-22 | 4 |
allantois | 3.41e-22 | 4 |
amnion | 2.53e-18 | 7 |
egg chorion | 3.51e-16 | 3 |
somatic layer of lateral plate mesoderm | 5.22e-16 | 8 |
organ component layer | 1.78e-12 | 66 |
uterus | 1.50e-11 | 21 |
embryonic uterus | 5.53e-11 | 22 |
internal female genitalia | 5.53e-11 | 22 |
internal genitalia | 1.49e-09 | 25 |
renal cortex tubule | 1.04e-07 | 3 |
region of nephron tubule | 1.04e-07 | 3 |
proximal tubule | 1.04e-07 | 3 |
urinary system structure | 1.53e-07 | 47 |
gallbladder | 1.98e-07 | 3 |
gall bladder primordium | 1.98e-07 | 3 |
renal system | 2.36e-07 | 48 |
cortex of kidney | 6.27e-07 | 12 |
renal parenchyma | 6.27e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
islet cell tumor | 5.90e-07 | 1 |
endocrine pancreas cancer | 5.90e-07 | 1 |
pancreatic endocrine carcinoma | 5.90e-07 | 1 |