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(Created page with "{{f5samples |id=FF:10013-101C4 |name=cervix, adult, pool1 |sample_id=10013 |rna_tube_id=101C4 |rna_box=101 |rna_position=C4 |sample_cell_lot=NA |sample_cell_catalog=NA...")
 
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{{f5samples
{{f5samples
|id=FF:10013-101C4
|DRA_sample_Accession=CAGE@SAMD00004902
|name=cervix, adult, pool1
|accession_numbers=CAGE;DRX008636;DRR009508;DRZ000933;DRZ002318;DRZ012283;DRZ013668
|sample_id=10013
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000002,UBERON:0000995,UBERON:0003134,UBERON:0000479,UBERON:0001560,UBERON:0005156,UBERON:0000064,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0003975,UBERON:0004175,UBERON:0010317,UBERON:0003100,UBERON:0000474
|rna_tube_id=101C4
|rna_box=101
|rna_position=C4
|sample_cell_lot=NA
|sample_cell_catalog=NA
|sample_company=Ambion
|rna_lot_number=0910061 -4
|rna_catalog_number=Cat:AM6000 Lot:0910061 -4
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=40,46,57,65 years old adult
|sample_tissue=cervix
|sample_donor(cell lot)=4 pool
|sample_sex=female
|sample_age=
|sample_ethnicity=mixed
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=normal
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-ToTALLY-RNA-v1.0
|rna_weight_ug=10.00000
|rna_concentration=
|sample_note=
|profile_hcage=CNhs10618,LSID656,release008,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
|ancestors_in_anatomy_facet=UBERON:0000002,UBERON:0000061,UBERON:0000062,UBERON:0000064,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000474,UBERON:0000479,UBERON:0000480,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0000990,UBERON:0000995,UBERON:0001062,UBERON:0001560,UBERON:0002050,UBERON:0002532,UBERON:0003100,UBERON:0003133,UBERON:0003134,UBERON:0003975,UBERON:0004120,UBERON:0004175,UBERON:0005156,UBERON:0005423,UBERON:0005795,UBERON:0007023
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010013
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr4:174451370..174451387,-!p1@HAND2!1.93!83.26!HAND2;;chr4:57547454..57547469,-!p1@HOPX!1.92!81.57!HOPX;;chr6:152128810..152128827,+!p2@ESR1!1.90!79.26!ESR1;;chr19:46801639..46801699,+!p1@HIF3A!1.90!77.72!HIF3A;;chr11:34642612..34642646,+!p1@EHF!1.88!74.03!EHF;;chr6:152126790..152126828,+!p3@ESR1!1.82!64.41!ESR1;;chr6:152126830..152126847,+!p4@ESR1!1.80!62.33!ESR1;;chr20:62680984..62680999,-!p1@SOX18!1.78!78.03!SOX18;;chr10:119302232..119302265,+!p1@EMX2!1.78!59.71!EMX2;;chr17:80797886..80797906,-!p1@ZNF750!1.71!49.86!ZNF750;;chr6:134210243..134210257,+!p1@TCF21!1.70!48.86!TCF21;;chr21:39870339..39870443,-!p1@ERG!1.67!45.79!ERG;;chr7:27239703..27239715,-!p1@HOXA13!1.65!43.32!HOXA13;;chr8:55370487..55370503,+!p1@SOX17!1.64!42.78!SOX17;;chr11:101000537..101000553,-!p1@PGR!1.64!42.48!PGR;;chr1:40105299..40105326,-!p1@HEYL!1.63!41.55!HEYL;;chr11:113930425..113930471,+!p1@ZBTB16!1.58!52.10!ZBTB16;;chr7:27224842..27224872,-!p1@HOXA11!1.57!36.17!HOXA11;;chr1:170632285..170632309,+!p1@PRRX1!1.56!39.48!PRRX1;;chr11:100999775..100999800,-!p2@PGR!1.56!35.40!PGR;;chr3:128212033..128212051,-!p1@GATA2!1.56!35.40!GATA2;;chr5:134369879..134369898,-!p2@PITX1!1.55!34.55!PITX1;;chr1:164528410..164528428,+!p1@PBX1!1.53!237.70!PBX1;;chrX:66763856..66763896,+!p1@AR!1.53!46.71!AR;;chr1:170633058..170633084,+!p5@PRRX1!1.51!31.24!PRRX1;;chr7:27224795..27224840,-!p2@HOXA11!1.51!31.16!HOXA11;;chr1:170633348..170633399,+!p2@PRRX1!1.50!40.94!PRRX1;;chr17:38256799..38256815,-!p3@NR1D1!1.49!53.10!NR1D1;;chr17:53342311..53342400,+!p1@HLF!1.48!33.01!HLF;;chr2:27371879..27371907,+!p1@TCF23!1.48!29.24!TCF23;;chr7:27239740..27239759,-!p2@HOXA13!1.45!27.09!HOXA13;;chr8:99956662..99956684,+!p1@OSR2!1.44!40.71!OSR2;;chr1:201979743..201979762,+!p1@ELF3!1.44!26.39!ELF3;;chr17:38256822..38256851,-!p1@NR1D1!1.43!194.99!NR1D1;;chr7:27213893..27213954,-!p1@HOXA10!1.43!26.09!HOXA10;;chr7:44143925..44143970,+!p1@AEBP1!1.42!539.96!AEBP1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.41!24.85!PEG3;;chr15:96873984..96873999,+!p3@NR2F2!1.40!172.52!NR2F2;;chr4:81118647..81118666,+!p1@PRDM8!1.40!31.70!PRDM8;;chr22:41763452..41763466,+!p2@TEF!1.40!24.24!TEF;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.40!23.85!ZBED1;;chr5:92919100..92919135,+!p3@NR2F1!1.39!28.47!NR2F1;;chr12:52437488..52437507,+!p2@NR4A1!1.37!22.55!NR4A1;;chr6:152128782..152128803,+!p5@ESR1!1.36!22.01!ESR1;;chr3:69788576..69788648,+!p1@MITF!1.35!110.96!MITF;;chr20:55204351..55204377,+!p1@TFAP2C!1.35!26.78!TFAP2C;;chr16:79634624..79634642,-!p1@MAF!1.34!80.41!MAF;;chr2:66662249..66662267,+!p2@MEIS1!1.34!78.10!MEIS1;;chr9:77112244..77112262,+!p1@RORB!1.33!22.78!RORB;;chr11:32457075..32457095,-!p1@WT1!1.33!20.55!WT1;;chr16:79634595..79634620,-!p2@MAF!1.32!36.09!MAF;;chr6:152011654..152011682,+!p1@ESR1!1.32!19.78!ESR1;;chr9:114287433..114287513,+!p1@ZNF483!1.31!50.17!ZNF483;;chr18:53068911..53068935,-!p4@TCF4!1.31!21.85!TCF4;;chr1:170632959..170632987,+!p4@PRRX1!1.31!21.16!PRRX1;;chr8:10588010..10588030,-!p1@SOX7!1.31!19.47!SOX7;;chr15:96874012..96874042,+!p2@NR2F2!1.30!164.21!NR2F2;;chr3:189507432..189507459,+!p1@TP63!1.30!19.01!TP63;;chr15:101069113..101069169,-!p1@CERS3!1.30!18.85!CERS3;;chr6:34524093..34524135,-!p1@SPDEF!1.30!18.85!SPDEF;;chr7:63505799..63505904,+!p1@ZNF727!1.29!18.70!ZNF727;;chr16:51185172..51185197,-!p1@SALL1!1.29!18.70!SALL1;;chr2:145277882..145277967,-!p3@ZEB2!1.28!31.16!ZEB2;;chr7:27192185..27192209,-!p1@HOXA3!1.28!18.01!HOXA3;;chr5:92918919..92918942,+!p1@NR2F1!1.27!77.64!NR2F1;;chr20:51588873..51588953,+!p1@TSHZ2!1.27!23.39!TSHZ2;;chr11:100999802..100999819,-!p4@PGR!1.27!17.47!PGR;;chr6:391743..391759,+!p1@IRF4!1.26!17.39!IRF4;;chr4:174450089..174450153,-!p2@HAND2!1.26!17.31!HAND2;;chr11:101000524..101000535,-!p3@PGR!1.25!16.93!PGR;;chr10:119302268..119302282,+!p4@EMX2!1.25!16.70!EMX2;;chr5:71803177..71803255,-!p1@ZNF366!1.25!16.62!ZNF366;;chr5:134369905..134369972,-!p1@PITX1!1.24!25.09!PITX1;;chr16:79633894..79633954,-!p3@MAF!1.23!30.93!MAF;;chr1:164528942..164528964,+!p11@PBX1!1.23!16.08!PBX1;;chr1:201979703..201979721,+!p2@ELF3!1.23!16.08!ELF3;;chr2:66662281..66662308,+!p1@MEIS1!1.22!53.71!MEIS1;;chr2:19558373..19558392,-!p1@OSR1!1.22!42.17!OSR1;;chr17:7492684..7492778,-!p2@SOX15!1.22!32.78!SOX15;;chr13:72441315..72441454,-!p1@DACH1!1.22!30.93!DACH1;;chr11:113930291..113930339,+!p2@ZBTB16!1.21!24.85!ZBTB16;;chr7:44143978..44143989,+!p2@AEBP1!1.20!26.93!AEBP1;;chr1:170633262..170633285,+!p3@PRRX1!1.20!17.16!PRRX1;;chr1:164528445..164528459,+!p2@PBX1!1.19!45.09!PBX1;;chr1:164528911..164528940,+!p7@PBX1!1.19!21.78!PBX1;;chr22:38380543..38380569,-!p1@SOX10!1.19!14.54!SOX10;;chr10:119302508..119302559,+!p5@EMX2!1.19!14.31!EMX2;;chr12:52445218..52445237,+!p1@NR4A1!1.18!176.29!NR4A1;;chr11:113930401..113930422,+!p3@ZBTB16!1.18!14.24!ZBTB16;;chr11:129245526..129245553,+!p1@BARX2!1.18!14.24!BARX2;;chr7:27205136..27205164,-!p1@HOXA9!1.18!14.16!HOXA9;;chr6:126070769..126070801,+!p1@HEY2!1.17!15.70!HEY2;;chr9:16575347..16575359,-!p12@BNC2!1.17!13.85!BNC2;;chr3:128206762..128206781,-!p2@GATA2!1.16!83.72!GATA2;;chr2:239756671..239756732,+!p1@TWIST2!1.16!42.63!TWIST2;;chr12:24715376..24715432,-!p1@SOX5!1.16!17.24!SOX5;;chr3:138665937..138665968,-!p1@FOXL2!1.16!13.47!FOXL2;;chr12:26277956..26277980,-!p1@BHLHE41!1.15!46.79!BHLHE41;;chr4:4861385..4861398,+!p1@MSX1!1.15!38.94!MSX1;;chr4:174451350..174451363,-!p3@HAND2!1.15!13.24!HAND2;;chr2:27371919..27371935,+!p2@TCF23!1.15!13.16!TCF23;;chr2:176969228..176969260,+!p1@HOXD11!1.15!13.08!HOXD11;;chr6:19837592..19837621,+!p1@ID4!1.14!77.64!ID4;;chr3:114819124..114819200,-!p3@ZBTB20!1.14!29.47!ZBTB20;;chr6:1312325..1312340,+!p1@FOXQ1!1.13!20.39!FOXQ1;;chr16:86544113..86544145,+!p1@FOXF1!1.13!15.70!FOXF1;;chr5:50679228..50679288,+!p1@ISL1!1.13!12.47!ISL1;;chr3:169381420..169381535,-!p1@MECOM!1.12!14.39!MECOM;;chr18:52989031..52989079,-!p2@TCF4!1.11!28.32!TCF4;;chr11:34642656..34642667,+!p2@EHF!1.11!11.85!EHF;;chr19:45971246..45971265,+!p1@FOSB!1.10!214.31!FOSB;;chr1:164528384..164528409,+!p3@PBX1!1.10!36.09!PBX1;;chr12:26277817..26277863,-!p2@BHLHE41!1.10!15.77!BHLHE41;;chr2:122042770..122042785,-!p1@TFCP2L1!1.10!11.62!TFCP2L1;;chr5:88178983..88179012,-!p1@MEF2C!1.09!87.26!MEF2C;;chr15:96869255..96869291,+!p6@NR2F2!1.09!20.62!NR2F2;;chr15:42749722..42749739,-!p2@ZFP106!1.09!20.31!ZFP106;;chr15:57511609..57511651,+!p2@TCF12!1.09!19.08!TCF12;;chr7:44143997..44144008,+!p3@AEBP1!1.09!14.47!AEBP1;;chr1:209979467..209979494,-!p1@IRF6!1.09!12.62!IRF6;;chr5:158526917..158526932,-!p1@EBF1!1.07!26.93!EBF1;;chr17:53344980..53345011,+!p3@HLF!1.07!10.85!HLF;;chr1:24645921..24645973,+!p2@GRHL3!1.07!10.62!GRHL3;;chr8:106330656..106330684,+!p1@ZFPM2!1.06!27.63!ZFPM2;;chr15:37390850..37390909,-!p3@MEIS2!1.06!20.78!MEIS2;;chr20:50179368..50179392,-!p2@NFATC2!1.06!13.54!NFATC2;;chr14:75745523..75745537,+!p1@FOS!1.05!1244.75!FOS;;chr11:47400078..47400106,-!p1@SPI1!1.05!10.23!SPI1;;chr10:77161533..77161546,-!p2@ZNF503!1.04!39.86!ZNF503;;chr1:61548374..61548415,+!p4@NFIA!1.04!18.70!NFIA;;chr20:2673383..2673441,+!p1@EBF4!1.04!15.85!EBF4;;chr2:177001290..177001315,+!p1@HOXD3!1.04!9.93!HOXD3;;chrX:66763914..66763933,+!p3@AR!1.04!9.85!AR;;chr10:77161504..77161530,-!p1@ZNF503!1.03!130.35!ZNF503;;chr1:61548069..61548102,+!p3@NFIA!1.03!23.62!NFIA;;chr1:164528616..164528660,+!p5@PBX1!1.03!20.16!PBX1;;chr10:119302182..119302196,+!p6@EMX2!1.03!9.77!EMX2;;chr1:204042233..204042249,+!p1@SOX13!1.02!61.10!SOX13;;chr1:164528340..164528379,+!p4@PBX1!1.02!23.78!PBX1;;chr2:166326200..166326216,+!p1@CSRNP3!1.02!14.16!CSRNP3;;chr2:176994408..176994492,+!p1@HOXD8!1.02!9.39!HOXD8;;chr11:32457413..32457431,-!p2@WT1!1.02!9.39!WT1;;chr3:141150883..141150961,+!p6@ZBTB38!1.01!9.31!ZBTB38;;chr17:59477233..59477263,+!p1@TBX2!1.00!28.47!TBX2;;chrX:66763815..66763854,+!p2@AR!1.00!12.00!AR;;chr8:93107451..93107468,-!p2@RUNX1T1!1.00!9.00!RUNX1T1;;chr15:96873921..96873946,+!p1@NR2F2!0.99!251.09!NR2F2;;chr5:158526459..158526481,-!p2@EBF1!0.99!11.93!EBF1;;chr3:126076242..126076257,-!p1@KLF15!0.99!11.08!KLF15;;chr5:92919068..92919082,+!p5@NR2F1!0.99!10.62!NR2F1;;chr7:42276787..42276815,-!p1@GLI3!0.98!23.32!GLI3;;chr10:119303078..119303169,+!p2@EMX2!0.98!8.62!EMX2;;chr11:101000445..101000465,-!p5@PGR!0.98!8.46!PGR;;chr19:46800289..46800327,+!p2@HIF3A!0.98!8.46!HIF3A;;chr17:53344945..53344977,+!p2@HLF!0.98!8.46!HLF;;chr13:41240737..41240787,-!p1@FOXO1!0.97!101.11!FOXO1;;chr13:73633131..73633149,+!p1@KLF5!0.97!90.80!KLF5;;chr3:114866084..114866118,-!p2@ZBTB20!0.97!31.32!ZBTB20;;chr17:1959369..1959388,+!p2@HIC1!0.97!22.62!HIC1;;chr20:30433396..30433414,-!p1@FOXS1!0.97!8.31!FOXS1;;chr2:176969179..176969226,+!p2@HOXD11!0.97!8.23!HOXD11;;chr9:110252035..110252057,-!p1@KLF4!0.96!133.12!KLF4;;chr5:92918894..92918912,+!p2@NR2F1!0.96!27.09!NR2F1;;chr17:38256877..38256900,-!p2@NR1D1!0.96!26.86!NR1D1;;chr15:96869222..96869251,+!p18@NR2F2!0.96!9.54!NR2F2;;chr18:45663490..45663528,-!p2@ZBTB7C!0.96!8.08!ZBTB7C;;chr1:61547894..61547968,+!p2@NFIA!0.94!23.39!NFIA;;chr7:15726296..15726315,-!p1@MEOX2!0.94!7.77!MEOX2;;chr17:46682321..46682362,-!p1@HOXB6!0.94!7.62!HOXB6;;chr15:37392724..37392757,-!p1@MEIS2!0.93!35.86!MEIS2;;chr12:96588368..96588394,+!p3@ELK3!0.93!20.78!ELK3;;chr19:13134772..13134822,+!p2@NFIX!0.93!11.39!NFIX;;chr2:176981499..176981522,+!p2@HOXD10!0.92!7.39!HOXD10;;chr7:96654133..96654150,-!p1@DLX5!0.92!7.23!DLX5;;chr12:115121962..115121987,-!p1@TBX3!0.90!61.64!TBX3;;chr11:46299199..46299233,+!p1@CREB3L1!0.90!37.63!CREB3L1;;chr7:113726357..113726443,+!p1@FOXP2!0.90!12.39!FOXP2;;chr18:52989081..52989117,-!p7@TCF4!0.90!10.93!TCF4;;chr19:38085768..38085821,+!p1@ZNF540!0.90!10.70!ZNF540;;chr17:38256590..38256599,-!p8@NR1D1!0.90!7.00!NR1D1;;chr10:119302645..119302712,+!p3@EMX2!0.90!7.00!EMX2;;chr2:176969097..176969109,+!p3@HOXD11!0.90!6.93!HOXD11;;chr20:39317868..39317884,-!p1@MAFB!0.89!84.26!MAFB;;chr18:42260920..42260951,+!p4@SETBP1!0.89!6.85!SETBP1;;chr1:164529004..164529015,+!p15@PBX1!0.89!6.77!PBX1;;chr3:25470156..25470227,+!p2@RARB!0.89!6.69!RARB;;chr19:16435625..16435682,+!p1@K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ERE!0.42!3.15!RERE;;chr18:53257068..53257086,-!p12@TCF4!0.42!2.54!TCF4;;chr5:88179518..88179569,-!p5@MEF2C!0.42!2.39!MEF2C;;chr3:168865194..168865245,-!p3@MECOM!0.42!2.39!MECOM;;chr4:103422232..103422241,+!p6@NFKB1!0.42!2.15!NFKB1;;chr18:72922858..72922897,+!p4@TSHZ1!0.42!2.08!TSHZ1;;chr6:41514178..41514192,+!p4@FOXP4!0.42!2.00!FOXP4;;chr5:134369848..134369853,-!p6@PITX1!0.42!1.62!PITX1;;chr6:10415484..10415508,-!p3@TFAP2A!0.42!1.62!TFAP2A;;chr6:126070748..126070768,+!p2@HEY2!0.42!1.62!HEY2;;chr6:152128371..152128382,+!p14@ESR1!0.42!1.62!ESR1;;chr7:27170359..27170381,-!p1@HOXA4!0.42!1.62!HOXA4;;chr8:93107827..93107845,-!p20@RUNX1T1!0.42!1.62!RUNX1T1;;chr2:171571827..171571853,+!p1@SP5!0.42!1.62!SP5;;chr2:177001268..177001287,+!p3@HOXD3!0.42!1.62!HOXD3;;chr2:238592039..238592054,+!p4@LRRFIP1!0.42!1.62!LRRFIP1;;chr3:27763807..27763822,-!p1@EOMES!0.42!1.62!EOMES;;chr4:109090075..109090095,-!p2@LEF1!0.42!1.62!LEF1;;chr10:64018918..64018936,+!p2@ZNF365!0.42!1.62!ZNF365;;chr1:165414325..165414369,-!p1@RXRG!0.42!1.62!RXRG;;chr17:46667628..46667642,-!p2@HOXB3!0.42!1.62!HOXB3;;chr18:53068940..53068951,-!p21@TCF4!0.42!1.62!TCF4;;chrX:24167086..24167111,+!p4@ZFX!0.42!1.62!ZFX;;chr3:5021113..5021180,+!p1@BHLHE40!0.41!164.60!BHLHE40;;chr11:10879593..10879620,-!p1@ZBED5!0.41!72.49!ZBED5;;chr11:118307179..118307223,+!p1@MLL!0.41!71.64!MLL;;chr7:137686791..137686821,-!p1@CREB3L2!0.41!67.56!CREB3L2;;chr8:124286495..124286548,-!p1@ZHX1!0.41!22.32!ZHX1;;chr1:167190091..167190156,+!p1@POU2F1!0.41!17.70!POU2F1;;chr2:174828892..174828972,-!p2@SP3!0.41!16.39!SP3;;chr22:24093267..24093327,-!p1@ZNF70!0.41!15.24!ZNF70;;chr9:4300050..4300118,-!p1@GLIS3!0.41!14.54!GLIS3;;chr19:52511437..52511490,-!p1@ZNF615!0.41!13.16!ZNF615;;chr8:28243661..28243709,-!p1@ZNF395!0.41!12.93!ZNF395;;chr4:140005341..140005411,-!p3@ELF2!0.41!11.77!ELF2;;chr6:41703296..41703367,-!p1@TFEB!0.41!11.23!TFEB;;chr2:60780753..60780800,-!p1@BCL11A!0.41!10.85!BCL11A;;chr19:11959532..11959593,+!p1@ZNF439!0.41!8.23!ZNF439;;chr19:53696587..53696633,-!p1@ZNF665!0.41!8.08!ZNF665;;chr6:28411241..28411284,-!p1@ZSCAN23!0.41!6.62!ZSCAN23;;chr10:97890024..97890064,+!p2@ZNF518A!0.41!5.62!ZNF518A;;chr7:19157043..19157088,-!p2@TWIST1!0.41!5.16!TWIST1;;chr12:10875658..10875708,-!p2@CSDA!0.41!4.69!CSDA;;chr17:38256973..38256990,-!p5@NR1D1!0.41!4.62!NR1D1;;chr15:41913412..41913456,+!p3@MGA!0.41!4.31!MGA;;chr19:9420483..9420530,-!p@chr19:9420483..9420530,-!0.41!3.77!ZNF699;;chr3:107241993..107242023,+!p4@BBX!0.41!3.46!BBX;;chr2:28618532..28618610,+!p4@FOSL2!0.41!3.31!FOSL2;;chr15:67358146..67358157,+!p7@SMAD3!0.41!3.23!SMAD3;;chr19:12075844..12075880,+!p3@ZNF763!0.41!3.23!ZNF763;;chr19:11877805..11877832,+!p2@ZNF441!0.41!3.15!ZNF441;;chr9:102584241..102584261,+!p4@NR4A3!0.41!2.92!NR4A3;;chr3:44754176..44754196,+!p2@ZNF502!0.41!2.54!ZNF502;;chr9:73029018..73029042,-!p6@KLF9!0.41!2.31!KLF9;;chr1:61869835..61869848,+!p8@NFIA!0.41!2.31!NFIA;;chr14:35873101..35873119,-!p6@NFKBIA!0.41!2.31!NFKBIA;;chr5:92920256..92920282,+!p7@NR2F1!0.41!2.08!NR2F1;;chr13:73636252..73636307,+!p2@KLF5!0.41!2.00!KLF5;;chr4:26322616..26322652,+!p1@RBPJ!0.40!49.25!RBPJ;;chrX:70586140..70586218,+!p1@TAF1!0.40!41.48!TAF1;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.40!22.39!GLIS2;;chr8:146126799..146126865,-!p1@COMMD5,p1@ZNF250!0.40!20.78!ZNF250;;chr19:12273866..12273935,+!p1@ZNF136!0.40!20.08!ZNF136;;chr17:47439437..47439533,-!p1@ZNF652!0.40!18.16!ZNF652;;chr12:80084768..80084821,-!p2@PAWR!0.40!15.24!PAWR;;chr19:37701396..37701453,-!p1@ZNF585B!0.40!12.47!ZNF585B;;
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000990;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000995;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003134;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003975;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006603,UBERON:0010316
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 67: Line 41:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/cervix%252c%2520adult%252c%2520pool1.CNhs10618.10013-101C4.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/cervix%252c%2520adult%252c%2520pool1.CNhs10618.10013-101C4.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/cervix%252c%2520adult%252c%2520pool1.CNhs10618.10013-101C4.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/cervix%252c%2520adult%252c%2520pool1.CNhs10618.10013-101C4.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/cervix%252c%2520adult%252c%2520pool1.CNhs10618.10013-101C4.hg38.nobarcode.ctss.bed.gz
|id=FF:10013-101C4
|is_a=EFO:0002091;;FF:0010013
|is_obsolete=
|library_id=CNhs10618
|library_id_phase_based=2:CNhs10618
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10013
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10013
|name=cervix, adult, pool1
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs10618,LSID656,release008,COMPLETED
|profile_rnaseq=
|profile_srnaseq=,,,
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|rna_box=101
|rna_catalog_number=Cat:AM6000 Lot:0910061 -4
|rna_concentration=1
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-ToTALLY-RNA-v1.0
|rna_lot_number=0910061 -4
|rna_od260/230=
|rna_od260/280=
|rna_position=C4
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=101C4
|rna_weight_ug=10
|sample_age=
|sample_category=tissues
|sample_cell_catalog=NA
|sample_cell_line=
|sample_cell_lot=NA
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Ambion
|sample_description=
|sample_dev_stage=40,46,57,65 years old adult
|sample_disease=normal
|sample_donor(cell lot)=4 pool
|sample_ethnicity=mixed
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.92140239709362e-233!GO:0005737;cytoplasm;7.10619064620427e-142!GO:0043226;organelle;2.51988490437105e-132!GO:0043229;intracellular organelle;5.98404032823687e-132!GO:0043231;intracellular membrane-bound organelle;3.38848170019144e-116!GO:0043227;membrane-bound organelle;3.38848170019144e-116!GO:0005515;protein binding;1.15298989773564e-105!GO:0044444;cytoplasmic part;6.18348696672126e-77!GO:0044422;organelle part;2.61984527332278e-68!GO:0044446;intracellular organelle part;5.35092688755871e-67!GO:0043170;macromolecule metabolic process;3.34172420445256e-53!GO:0032991;macromolecular complex;8.55420142277885e-53!GO:0005634;nucleus;4.62796472801846e-51!GO:0044238;primary metabolic process;7.89989052564686e-51!GO:0044237;cellular metabolic process;5.0365450927837e-48!GO:0016043;cellular component organization and biogenesis;1.28180938302642e-45!GO:0030529;ribonucleoprotein complex;5.01144556568026e-45!GO:0003723;RNA binding;7.58894749266442e-42!GO:0044428;nuclear part;4.96683865255373e-41!GO:0043233;organelle lumen;4.53837572205685e-39!GO:0031974;membrane-enclosed lumen;4.53837572205685e-39!GO:0033036;macromolecule localization;1.5031361488485e-35!GO:0019538;protein metabolic process;6.93790109087794e-35!GO:0015031;protein transport;2.76096191267322e-34!GO:0008104;protein localization;1.08683598541823e-32!GO:0045184;establishment of protein localization;1.11311951328711e-32!GO:0010467;gene expression;2.0596032006939e-31!GO:0043283;biopolymer metabolic process;5.87557623325603e-30!GO:0044260;cellular macromolecule metabolic process;2.1294923998148e-29!GO:0044267;cellular protein metabolic process;5.53457974705059e-29!GO:0016071;mRNA metabolic process;1.90228163889806e-28!GO:0043234;protein complex;1.75701374364489e-26!GO:0046907;intracellular transport;2.34136861608491e-26!GO:0006396;RNA processing;2.84455349451408e-26!GO:0008380;RNA splicing;3.19152472464957e-26!GO:0005829;cytosol;4.08550775457131e-26!GO:0031981;nuclear lumen;6.0752911771145e-26!GO:0031090;organelle membrane;1.54735169126852e-25!GO:0005840;ribosome;1.18813710661457e-24!GO:0005739;mitochondrion;1.18813710661457e-24!GO:0006886;intracellular protein transport;4.07533069890647e-24!GO:0065003;macromolecular complex assembly;4.72621296465298e-24!GO:0006397;mRNA processing;1.1809158979349e-23!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.67179949038517e-23!GO:0008134;transcription factor binding;8.33136207555712e-23!GO:0006412;translation;8.45455739702068e-23!GO:0022607;cellular component assembly;3.00258519147811e-22!GO:0003735;structural constituent of ribosome;3.77984849214049e-21!GO:0043228;non-membrane-bound organelle;4.45133379618893e-21!GO:0043232;intracellular non-membrane-bound organelle;4.45133379618893e-21!GO:0031967;organelle envelope;1.23833332295179e-19!GO:0031975;envelope;1.27734966711302e-19!GO:0033279;ribosomal subunit;5.74496071187135e-19!GO:0006996;organelle organization and biogenesis;2.27215309664958e-18!GO:0005681;spliceosome;3.50173516979833e-18!GO:0005654;nucleoplasm;1.36905582253157e-17!GO:0048770;pigment granule;1.78438803333049e-17!GO:0042470;melanosome;1.78438803333049e-17!GO:0016070;RNA metabolic process;2.3824399363504e-17!GO:0051641;cellular localization;2.92865878274604e-17!GO:0044429;mitochondrial part;3.09430568220429e-17!GO:0050794;regulation of cellular process;3.22524206318396e-17!GO:0051649;establishment of cellular localization;5.2181156678884e-17!GO:0005830;cytosolic ribosome (sensu Eukaryota);6.64534169000328e-17!GO:0048523;negative regulation of cellular process;1.5578442126165e-16!GO:0044451;nucleoplasm part;1.89247529632875e-15!GO:0050789;regulation of biological process;2.6278866186191e-15!GO:0003676;nucleic acid binding;4.42414638451099e-15!GO:0016192;vesicle-mediated transport;5.19485498744919e-15!GO:0009059;macromolecule biosynthetic process;1.18474715974788e-14!GO:0048519;negative regulation of biological process;1.42946450265117e-14!GO:0003712;transcription cofactor activity;3.9239047967755e-14!GO:0022613;ribonucleoprotein complex biogenesis and assembly;7.07486662550378e-14!GO:0005794;Golgi apparatus;1.13606412964765e-13!GO:0044445;cytosolic part;2.23054102676242e-13!GO:0006366;transcription from RNA polymerase II promoter;3.64958885894304e-13!GO:0006119;oxidative phosphorylation;5.48165258492119e-13!GO:0005783;endoplasmic reticulum;5.94971701633298e-13!GO:0048193;Golgi vesicle transport;6.37344937555656e-13!GO:0016564;transcription repressor activity;2.20085960030705e-12!GO:0009058;biosynthetic process;3.13714756757711e-12!GO:0005740;mitochondrial envelope;3.6648433079663e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;3.6648433079663e-12!GO:0019866;organelle inner membrane;4.58877854402135e-12!GO:0006511;ubiquitin-dependent protein catabolic process;5.50602934532241e-12!GO:0031966;mitochondrial membrane;5.50602934532241e-12!GO:0019941;modification-dependent protein catabolic process;7.45831849045738e-12!GO:0043632;modification-dependent macromolecule catabolic process;7.45831849045738e-12!GO:0022618;protein-RNA complex assembly;8.33790061060265e-12!GO:0006457;protein folding;1.03850543366455e-11!GO:0006605;protein targeting;1.10693203319099e-11!GO:0044249;cellular biosynthetic process;1.12375931580915e-11!GO:0044257;cellular protein catabolic process;1.25669542100469e-11!GO:0012505;endomembrane system;3.84980607368461e-11!GO:0005743;mitochondrial inner membrane;6.62338297299891e-11!GO:0000166;nucleotide binding;6.62338297299891e-11!GO:0006512;ubiquitin cycle;9.00810513042145e-11!GO:0016604;nuclear body;1.32195901675931e-10!GO:0065007;biological regulation;1.32612679507457e-10!GO:0006913;nucleocytoplasmic transport;1.72638695855525e-10!GO:0015935;small ribosomal subunit;2.72754112086858e-10!GO:0016462;pyrophosphatase activity;3.26720855812822e-10!GO:0006461;protein complex assembly;3.53576630512593e-10!GO:0017111;nucleoside-triphosphatase activity;3.95759220063635e-10!GO:0012501;programmed cell death;3.95759220063635e-10!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.27366258169085e-10!GO:0051169;nuclear transport;4.93163260570844e-10!GO:0016817;hydrolase activity, acting on acid anhydrides;5.3223049321914e-10!GO:0016607;nuclear speck;5.38130149741192e-10!GO:0044265;cellular macromolecule catabolic process;6.04919715838264e-10!GO:0043285;biopolymer catabolic process;6.30009991115137e-10!GO:0031324;negative regulation of cellular metabolic process;6.46791311742819e-10!GO:0044455;mitochondrial membrane part;6.93850402640437e-10!GO:0016481;negative regulation of transcription;7.22183008628663e-10!GO:0006915;apoptosis;8.86522224096471e-10!GO:0008219;cell death;1.07258199638756e-09!GO:0016265;death;1.07258199638756e-09!GO:0008565;protein transporter activity;1.19175154623402e-09!GO:0043687;post-translational protein modification;1.43752736099975e-09!GO:0015934;large ribosomal subunit;1.54430273960458e-09!GO:0030036;actin cytoskeleton organization and biogenesis;1.54430273960458e-09!GO:0008135;translation factor activity, nucleic acid binding;1.57783527775119e-09!GO:0030163;protein catabolic process;1.58824853892879e-09!GO:0043412;biopolymer modification;1.79025060175486e-09!GO:0005746;mitochondrial respiratory chain;2.82255006260943e-09!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.30486611888956e-09!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.94255400055377e-09!GO:0000502;proteasome complex (sensu Eukaryota);5.08085287370005e-09!GO:0008361;regulation of cell size;6.92270806468201e-09!GO:0006464;protein modification process;7.39249667296697e-09!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);7.4666200163248e-09!GO:0016874;ligase activity;7.77962981986005e-09!GO:0016049;cell growth;8.50262267799582e-09!GO:0031988;membrane-bound vesicle;1.03851059696536e-08!GO:0009892;negative regulation of metabolic process;1.04856395132177e-08!GO:0006259;DNA metabolic process;1.21118042990245e-08!GO:0000398;nuclear mRNA splicing, via spliceosome;1.2383153078784e-08!GO:0000375;RNA splicing, via transesterification reactions;1.2383153078784e-08!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.2383153078784e-08!GO:0005793;ER-Golgi intermediate compartment;1.24933314389398e-08!GO:0005730;nucleolus;1.2838306496809e-08!GO:0050136;NADH dehydrogenase (quinone) activity;1.33782761290321e-08!GO:0003954;NADH dehydrogenase activity;1.33782761290321e-08!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.33782761290321e-08!GO:0031982;vesicle;1.35266972176399e-08!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.41881277136827e-08!GO:0016023;cytoplasmic membrane-bound vesicle;1.92350106329368e-08!GO:0005635;nuclear envelope;2.84799628071852e-08!GO:0031252;leading edge;2.88863099856634e-08!GO:0031410;cytoplasmic vesicle;2.97224872727934e-08!GO:0006446;regulation of translational initiation;3.64354440617911e-08!GO:0003714;transcription corepressor activity;4.09046040770261e-08!GO:0017038;protein import;4.81574965635431e-08!GO:0051082;unfolded protein binding;5.95322550893511e-08!GO:0044432;endoplasmic reticulum part;6.38316781431685e-08!GO:0008092;cytoskeletal protein binding;6.707228618615e-08!GO:0019222;regulation of metabolic process;6.77958168309079e-08!GO:0003743;translation initiation factor activity;7.80911997442634e-08!GO:0030029;actin filament-based process;8.08756523806822e-08!GO:0009057;macromolecule catabolic process;1.19765835172695e-07!GO:0031965;nuclear membrane;1.63197165901311e-07!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.6690842624651e-07!GO:0045892;negative regulation of transcription, DNA-dependent;1.69306703310084e-07!GO:0007264;small GTPase mediated signal transduction;2.14160295405299e-07!GO:0044248;cellular catabolic process;2.39892535818925e-07!GO:0003713;transcription coactivator activity;2.39892535818925e-07!GO:0001558;regulation of cell growth;2.74007987793329e-07!GO:0006606;protein import into nucleus;3.14255375002959e-07!GO:0016563;transcription activator activity;3.2776077816746e-07!GO:0008639;small protein conjugating enzyme activity;4.34645085260655e-07!GO:0031980;mitochondrial lumen;4.75984200731646e-07!GO:0005759;mitochondrial matrix;4.75984200731646e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;5.08370076084229e-07!GO:0051170;nuclear import;5.11530979998673e-07!GO:0030964;NADH dehydrogenase complex (quinone);5.14532241230806e-07!GO:0045271;respiratory chain complex I;5.14532241230806e-07!GO:0005747;mitochondrial respiratory chain complex I;5.14532241230806e-07!GO:0042775;organelle ATP synthesis coupled electron transport;5.27173793623336e-07!GO:0042773;ATP synthesis coupled electron transport;5.27173793623336e-07!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.33780851519573e-07!GO:0006413;translational initiation;5.39566604950015e-07!GO:0004842;ubiquitin-protein ligase activity;5.59555880222806e-07!GO:0003924;GTPase activity;6.40574164670765e-07!GO:0032553;ribonucleotide binding;9.88582488174519e-07!GO:0032555;purine ribonucleotide binding;9.88582488174519e-07!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.02450437363326e-06!GO:0019787;small conjugating protein ligase activity;1.18958586353314e-06!GO:0019899;enzyme binding;1.25708096948966e-06!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.41233157227582e-06!GO:0006888;ER to Golgi vesicle-mediated transport;1.46547740174484e-06!GO:0017076;purine nucleotide binding;1.55615589845257e-06!GO:0005768;endosome;1.82676119816765e-06!GO:0006323;DNA packaging;2.1281604379598e-06!GO:0005525;GTP binding;2.22609928855324e-06!GO:0051246;regulation of protein metabolic process;3.19499370894631e-06!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.55439662382499e-06!GO:0045786;negative regulation of progression through cell cycle;5.31268449041774e-06!GO:0006793;phosphorus metabolic process;1.01864910466139e-05!GO:0006796;phosphate metabolic process;1.01864910466139e-05!GO:0005761;mitochondrial ribosome;1.1662728574026e-05!GO:0000313;organellar ribosome;1.1662728574026e-05!GO:0040008;regulation of growth;1.22895552013872e-05!GO:0043069;negative regulation of programmed cell death;1.43303275279593e-05!GO:0007010;cytoskeleton organization and biogenesis;1.43303275279593e-05!GO:0006916;anti-apoptosis;1.46217247043824e-05!GO:0043566;structure-specific DNA binding;1.4788711860885e-05!GO:0009060;aerobic respiration;1.54167267698442e-05!GO:0048475;coated membrane;1.54258333798205e-05!GO:0030117;membrane coat;1.54258333798205e-05!GO:0031323;regulation of cellular metabolic process;1.56095083473474e-05!GO:0032561;guanyl ribonucleotide binding;1.56095083473474e-05!GO:0019001;guanyl nucleotide binding;1.56095083473474e-05!GO:0016568;chromatin modification;1.56370079568517e-05!GO:0030120;vesicle coat;1.57033998923329e-05!GO:0030662;coated vesicle membrane;1.57033998923329e-05!GO:0045333;cellular respiration;1.57406079022117e-05!GO:0044453;nuclear membrane part;1.90071671115868e-05!GO:0051789;response to protein stimulus;1.90988790329374e-05!GO:0006986;response to unfolded protein;1.90988790329374e-05!GO:0015986;ATP synthesis coupled proton transport;1.92216414166845e-05!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.92216414166845e-05!GO:0009055;electron carrier activity;2.34306275887283e-05!GO:0043066;negative regulation of apoptosis;2.34505317178542e-05!GO:0006350;transcription;2.64208497592967e-05!GO:0048522;positive regulation of cellular process;2.93559150176449e-05!GO:0007243;protein kinase cascade;3.32508511862136e-05!GO:0005788;endoplasmic reticulum lumen;3.63974671895889e-05!GO:0016881;acid-amino acid ligase activity;3.66515636999629e-05!GO:0019829;cation-transporting ATPase activity;3.89447504358408e-05!GO:0016044;membrane organization and biogenesis;4.19336353386231e-05!GO:0016310;phosphorylation;4.2033294998141e-05!GO:0010468;regulation of gene expression;4.2044808999691e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;5.13050134591737e-05!GO:0006613;cotranslational protein targeting to membrane;5.85872841027922e-05!GO:0003779;actin binding;6.49758836848799e-05!GO:0050657;nucleic acid transport;6.68303709836792e-05!GO:0051236;establishment of RNA localization;6.68303709836792e-05!GO:0050658;RNA transport;6.68303709836792e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.73098932855539e-05!GO:0030027;lamellipodium;6.9940553208688e-05!GO:0006403;RNA localization;6.9940553208688e-05!GO:0016879;ligase activity, forming carbon-nitrogen bonds;7.18274429831635e-05!GO:0003702;RNA polymerase II transcription factor activity;7.50766180558263e-05!GO:0005789;endoplasmic reticulum membrane;7.83256113572244e-05!GO:0005770;late endosome;8.2083508818568e-05!GO:0042981;regulation of apoptosis;8.85210441055358e-05!GO:0051276;chromosome organization and biogenesis;9.16871765574477e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;9.31338303542136e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;9.42136713840505e-05!GO:0005912;adherens junction;9.86838472474083e-05!GO:0043067;regulation of programmed cell death;9.90804902091798e-05!GO:0005773;vacuole;9.967653893875e-05!GO:0051427;hormone receptor binding;0.000115011172576102!GO:0007265;Ras protein signal transduction;0.000118681476876867!GO:0000245;spliceosome assembly;0.000120455254019816!GO:0005856;cytoskeleton;0.000125014511114192!GO:0044431;Golgi apparatus part;0.000127691293653089!GO:0005643;nuclear pore;0.000133922215909155!GO:0016469;proton-transporting two-sector ATPase complex;0.000133922215909155!GO:0016197;endosome transport;0.000134036493265887!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.000147891613721039!GO:0006099;tricarboxylic acid cycle;0.00015478189742149!GO:0046356;acetyl-CoA catabolic process;0.00015478189742149!GO:0051186;cofactor metabolic process;0.000179337502863021!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000187738927555936!GO:0004386;helicase activity;0.000189351921947687!GO:0035257;nuclear hormone receptor binding;0.000215342799607674!GO:0016887;ATPase activity;0.000215343049953311!GO:0000151;ubiquitin ligase complex;0.000219434970696308!GO:0009966;regulation of signal transduction;0.000226695249404287!GO:0048518;positive regulation of biological process;0.000230324170658321!GO:0003697;single-stranded DNA binding;0.000242527568466072!GO:0006333;chromatin assembly or disassembly;0.00024581443639428!GO:0045259;proton-transporting ATP synthase complex;0.000247052486603844!GO:0005798;Golgi-associated vesicle;0.00025425463024664!GO:0000323;lytic vacuole;0.000264516987886316!GO:0005764;lysosome;0.000264516987886316!GO:0048471;perinuclear region of cytoplasm;0.000268975085912534!GO:0008026;ATP-dependent helicase activity;0.000274392921392528!GO:0032774;RNA biosynthetic process;0.000274392921392528!GO:0006351;transcription, DNA-dependent;0.000277398220441492!GO:0030133;transport vesicle;0.000296000814558661!GO:0044440;endosomal part;0.000297780883674036!GO:0010008;endosome membrane;0.000297780883674036!GO:0009142;nucleoside triphosphate biosynthetic process;0.000297780883674036!GO:0009201;ribonucleoside triphosphate biosynthetic process;0.000297780883674036!GO:0005791;rough endoplasmic reticulum;0.000307549138022244!GO:0032446;protein modification by small protein conjugation;0.000310416435603096!GO:0051726;regulation of cell cycle;0.000316655906999966!GO:0000074;regulation of progression through cell cycle;0.00032130382172733!GO:0007049;cell cycle;0.000355632077315401!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;0.000397673208454277!GO:0009145;purine nucleoside triphosphate biosynthetic process;0.000397673208454277!GO:0045893;positive regulation of transcription, DNA-dependent;0.000402655528483456!GO:0008286;insulin receptor signaling pathway;0.000410510530237351!GO:0007167;enzyme linked receptor protein signaling pathway;0.000446047666117313!GO:0006754;ATP biosynthetic process;0.00045141951177146!GO:0006753;nucleoside phosphate metabolic process;0.00045141951177146!GO:0009109;coenzyme catabolic process;0.00051834748211667!GO:0009199;ribonucleoside triphosphate metabolic process;0.000536207112573401!GO:0016567;protein ubiquitination;0.000536207112573401!GO:0003724;RNA helicase activity;0.000543951069910264!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000573822892983287!GO:0009141;nucleoside triphosphate metabolic process;0.000583935757229355!GO:0005839;proteasome core complex (sensu Eukaryota);0.000589092402947133!GO:0030532;small nuclear ribonucleoprotein complex;0.000614750069676377!GO:0045449;regulation of transcription;0.000637166603979325!GO:0005769;early endosome;0.000641046993374765!GO:0031589;cell-substrate adhesion;0.000641046993374765!GO:0045941;positive regulation of transcription;0.000641872106594149!GO:0042623;ATPase activity, coupled;0.00069118360368728!GO:0009205;purine ribonucleoside triphosphate metabolic process;0.000697833958538122!GO:0009144;purine nucleoside triphosphate metabolic process;0.000697833958538122!GO:0006732;coenzyme metabolic process;0.000708830086276057!GO:0001726;ruffle;0.000720498677601129!GO:0009259;ribonucleotide metabolic process;0.000739582455310634!GO:0030867;rough endoplasmic reticulum membrane;0.000764257232451379!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000769258706607034!GO:0000902;cell morphogenesis;0.000781051697596744!GO:0032989;cellular structure morphogenesis;0.000781051697596744!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000801360056916885!GO:0005083;small GTPase regulator activity;0.00081250638196558!GO:0042254;ribosome biogenesis and assembly;0.000843430444681334!GO:0009150;purine ribonucleotide metabolic process;0.000847745664124419!GO:0045792;negative regulation of cell size;0.000868616001972768!GO:0006084;acetyl-CoA metabolic process;0.000868616001972768!GO:0042802;identical protein binding;0.000886320854803885!GO:0051028;mRNA transport;0.000911074586465871!GO:0009056;catabolic process;0.000911074586465871!GO:0003690;double-stranded DNA binding;0.000941412411529265!GO:0007160;cell-matrix adhesion;0.000952744975840265!GO:0005667;transcription factor complex;0.000977959334610623!GO:0015078;hydrogen ion transmembrane transporter activity;0.00101099676034772!GO:0043623;cellular protein complex assembly;0.00101099676034772!GO:0046034;ATP metabolic process;0.00101842577425157!GO:0051187;cofactor catabolic process;0.00103074822423615!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00103074822423615!GO:0005524;ATP binding;0.00107694433778212!GO:0030518;steroid hormone receptor signaling pathway;0.00107964629352784!GO:0009152;purine ribonucleotide biosynthetic process;0.00109547391539952!GO:0006402;mRNA catabolic process;0.00110282384037089!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00110348459375627!GO:0032559;adenyl ribonucleotide binding;0.00116209821868144!GO:0030308;negative regulation of cell growth;0.00119936881277017!GO:0051128;regulation of cellular component organization and biogenesis;0.00121605608232785!GO:0009260;ribonucleotide biosynthetic process;0.00128875125197162!GO:0046930;pore complex;0.00133096551904468!GO:0065004;protein-DNA complex assembly;0.00141315739904059!GO:0007179;transforming growth factor beta receptor signaling pathway;0.00159939259188792!GO:0006163;purine nucleotide metabolic process;0.00160030584376838!GO:0006897;endocytosis;0.00165085935347503!GO:0010324;membrane invagination;0.00165085935347503!GO:0030554;adenyl nucleotide binding;0.00175154990621126!GO:0007242;intracellular signaling cascade;0.00176253876609837!GO:0016859;cis-trans isomerase activity;0.001796417113085!GO:0065002;intracellular protein transport across a membrane;0.00184812528759026!GO:0006950;response to stress;0.00188365263980576!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00188365263980576!GO:0033116;ER-Golgi intermediate compartment membrane;0.00198223411311308!GO:0044420;extracellular matrix part;0.00206974505051005!GO:0006612;protein targeting to membrane;0.00210885251124431!GO:0006355;regulation of transcription, DNA-dependent;0.00211440227194084!GO:0004298;threonine endopeptidase activity;0.00211582681899558!GO:0015980;energy derivation by oxidation of organic compounds;0.00214355320580432!GO:0008250;oligosaccharyl transferase complex;0.00217718704499495!GO:0006164;purine nucleotide biosynthetic process;0.00218204103404607!GO:0008154;actin polymerization and/or depolymerization;0.00226016449012825!GO:0001944;vasculature development;0.00251404667456163!GO:0006891;intra-Golgi vesicle-mediated transport;0.00255934853416519!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00268815293919763!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00270211104047327!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00282326114958557!GO:0030216;keratinocyte differentiation;0.00282754841664435!GO:0033673;negative regulation of kinase activity;0.0028846703670951!GO:0006469;negative regulation of protein kinase activity;0.0028846703670951!GO:0043021;ribonucleoprotein binding;0.00288907573102127!GO:0005885;Arp2/3 protein complex;0.00294494413780034!GO:0048468;cell development;0.00295728093469534!GO:0035258;steroid hormone receptor binding;0.00295873401856383!GO:0001568;blood vessel development;0.00297754925838686!GO:0008287;protein serine/threonine phosphatase complex;0.00316739931187068!GO:0051920;peroxiredoxin activity;0.00316739931187068!GO:0008047;enzyme activator activity;0.0034797349737095!GO:0030041;actin filament polymerization;0.00351221555043003!GO:0051270;regulation of cell motility;0.00351558776958683!GO:0005905;coated pit;0.00351558776958683!GO:0007169;transmembrane receptor protein tyrosine kinase signaling pathway;0.00356190869784927!GO:0008283;cell proliferation;0.00379639785308874!GO:0006607;NLS-bearing substrate import into nucleus;0.00381119435802493!GO:0045045;secretory pathway;0.00390456455005884!GO:0006974;response to DNA damage stimulus;0.00401022835752532!GO:0007266;Rho protein signal transduction;0.00414321291116944!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.00417349807376556!GO:0004667;prostaglandin-D synthase activity;0.00417349807376556!GO:0050802;circadian sleep/wake cycle, sleep;0.00417349807376556!GO:0022410;circadian sleep/wake cycle process;0.00417349807376556!GO:0042749;regulation of circadian sleep/wake cycle;0.00417349807376556!GO:0000139;Golgi membrane;0.00434350188351747!GO:0004576;oligosaccharyl transferase activity;0.00443579383858688!GO:0008186;RNA-dependent ATPase activity;0.00447676570471418!GO:0005813;centrosome;0.00452858450664233!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00471218879893283!GO:0004812;aminoacyl-tRNA ligase activity;0.00471218879893283!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00471218879893283!GO:0030695;GTPase regulator activity;0.00472294925524501!GO:0006892;post-Golgi vesicle-mediated transport;0.00504143037441379!GO:0001533;cornified envelope;0.00507630451556493!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00516526453285527!GO:0019904;protein domain specific binding;0.00529962712669816!GO:0051168;nuclear export;0.00551288630261482!GO:0051087;chaperone binding;0.00551491940065254!GO:0045926;negative regulation of growth;0.00567323723897491!GO:0008654;phospholipid biosynthetic process;0.00569082254646549!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0059243868129777!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0059243868129777!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0059243868129777!GO:0017166;vinculin binding;0.00609348996150493!GO:0005100;Rho GTPase activator activity;0.00631194564172286!GO:0005741;mitochondrial outer membrane;0.00652467297714377!GO:0030134;ER to Golgi transport vesicle;0.00712609382527117!GO:0030522;intracellular receptor-mediated signaling pathway;0.00724890289936517!GO:0030127;COPII vesicle coat;0.0075767018810419!GO:0012507;ER to Golgi transport vesicle membrane;0.0075767018810419!GO:0051348;negative regulation of transferase activity;0.0077152600531144!GO:0016363;nuclear matrix;0.00775136111768321!GO:0051674;localization of cell;0.0080186181788432!GO:0006928;cell motility;0.0080186181788432!GO:0009967;positive regulation of signal transduction;0.00819905249881428!GO:0005815;microtubule organizing center;0.00821260447626727!GO:0030663;COPI coated vesicle membrane;0.00821260447626727!GO:0030126;COPI vesicle coat;0.00821260447626727!GO:0043038;amino acid activation;0.00821260447626727!GO:0006418;tRNA aminoacylation for protein translation;0.00821260447626727!GO:0043039;tRNA aminoacylation;0.00821260447626727!GO:0005048;signal sequence binding;0.00829425381823966!GO:0005096;GTPase activator activity;0.00833988744149136!GO:0003729;mRNA binding;0.00833988744149136!GO:0043488;regulation of mRNA stability;0.00843521019005437!GO:0043487;regulation of RNA stability;0.00843521019005437!GO:0030521;androgen receptor signaling pathway;0.00895754536230448!GO:0048500;signal recognition particle;0.00925275794503716!GO:0005159;insulin-like growth factor receptor binding;0.0093849445025515!GO:0032940;secretion by cell;0.0096566661187295!GO:0051287;NAD binding;0.0096566661187295!GO:0019843;rRNA binding;0.00969850126422827!GO:0000785;chromatin;0.0097802235692703!GO:0031968;organelle outer membrane;0.00995666772300181!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0100284415777777!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0101093391121628!GO:0006401;RNA catabolic process;0.0101554401272308!GO:0051252;regulation of RNA metabolic process;0.0109396758701523!GO:0006979;response to oxidative stress;0.0111192821307985!GO:0051235;maintenance of localization;0.0111600510555234!GO:0004004;ATP-dependent RNA helicase activity;0.0113767334857187!GO:0016584;nucleosome positioning;0.0113767334857187!GO:0007050;cell cycle arrest;0.0116944440086802!GO:0019867;outer membrane;0.012013864853946!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.0121646284310619!GO:0005925;focal adhesion;0.0123130183411357!GO:0005938;cell cortex;0.0123834050886445!GO:0001666;response to hypoxia;0.0124954822601853!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.0124954822601853!GO:0040011;locomotion;0.0126314266891599!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.0129805091986303!GO:0016072;rRNA metabolic process;0.0133072104933727!GO:0048514;blood vessel morphogenesis;0.0136481137027445!GO:0006364;rRNA processing;0.0137194312129733!GO:0019838;growth factor binding;0.0137194312129733!GO:0040012;regulation of locomotion;0.0139668918353999!GO:0030100;regulation of endocytosis;0.0145405609630949!GO:0015630;microtubule cytoskeleton;0.0145652560231428!GO:0009719;response to endogenous stimulus;0.0145879392031386!GO:0008601;protein phosphatase type 2A regulator activity;0.0147830865569305!GO:0065009;regulation of a molecular function;0.0154538294973312!GO:0005913;cell-cell adherens junction;0.0155506803482902!GO:0007005;mitochondrion organization and biogenesis;0.015611998730563!GO:0043034;costamere;0.0158553495915267!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.016034396207919!GO:0008139;nuclear localization sequence binding;0.0161952360899015!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.0165522117499893!GO:0006752;group transfer coenzyme metabolic process;0.0165522117499893!GO:0006414;translational elongation;0.0165562035498584!GO:0030118;clathrin coat;0.0170785154647123!GO:0018196;peptidyl-asparagine modification;0.0172196050871752!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0172196050871752!GO:0005581;collagen;0.0176045223493629!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0177706825846739!GO:0030132;clathrin coat of coated pit;0.0179672608131228!GO:0030137;COPI-coated vesicle;0.018182826650386!GO:0030055;cell-matrix junction;0.0183029262477305!GO:0031901;early endosome membrane;0.0184202253420402!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0188488517414688!GO:0045047;protein targeting to ER;0.0188488517414688!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0188644609179652!GO:0005924;cell-substrate adherens junction;0.0189932751341351!GO:0030658;transport vesicle membrane;0.0202511556096663!GO:0005099;Ras GTPase activator activity;0.0208757407971308!GO:0001525;angiogenesis;0.0214238986643024!GO:0005869;dynactin complex;0.0227553519488912!GO:0000159;protein phosphatase type 2A complex;0.0229398074991165!GO:0008312;7S RNA binding;0.0238027238542372!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0238190265878118!GO:0031072;heat shock protein binding;0.0240236505912292!GO:0006376;mRNA splice site selection;0.0257294416216931!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0257294416216931!GO:0046983;protein dimerization activity;0.0258226297687789!GO:0006334;nucleosome assembly;0.0258634604279962!GO:0004860;protein kinase inhibitor activity;0.0260016104000198!GO:0001725;stress fiber;0.0263070421393602!GO:0032432;actin filament bundle;0.0263070421393602!GO:0031625;ubiquitin protein ligase binding;0.027083048529804!GO:0051101;regulation of DNA binding;0.0275018704026828!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0278821246036453!GO:0033043;regulation of organelle organization and biogenesis;0.0278821246036453!GO:0005762;mitochondrial large ribosomal subunit;0.0280186395737513!GO:0000315;organellar large ribosomal subunit;0.0280186395737513!GO:0035035;histone acetyltransferase binding;0.02817181497858!GO:0000118;histone deacetylase complex;0.0282450777874201!GO:0015629;actin cytoskeleton;0.0287826206858325!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0295556044926025!GO:0001516;prostaglandin biosynthetic process;0.0295556044926025!GO:0046457;prostanoid biosynthetic process;0.0295556044926025!GO:0008147;structural constituent of bone;0.0296847098391105!GO:0000059;protein import into nucleus, docking;0.0298650687964146!GO:0006984;ER-nuclear signaling pathway;0.0302454765544378!GO:0031902;late endosome membrane;0.0302454765544378!GO:0022402;cell cycle process;0.0314375319876241!GO:0001527;microfibril;0.0338568294957778!GO:0047485;protein N-terminus binding;0.0346696118871111!GO:0005586;collagen type III;0.0350394760805776!GO:0004722;protein serine/threonine phosphatase activity;0.0362622734235298!GO:0030659;cytoplasmic vesicle membrane;0.0365520561771692!GO:0030674;protein binding, bridging;0.0365997510104021!GO:0030235;nitric-oxide synthase regulator activity;0.0367488729739182!GO:0012506;vesicle membrane;0.0367815700469978!GO:0030241;muscle thick filament assembly;0.0372926976591393!GO:0031034;myosin filament assembly;0.0372926976591393!GO:0031033;myosin filament assembly or disassembly;0.0372926976591393!GO:0048739;cardiac muscle fiber development;0.0372926976591393!GO:0016853;isomerase activity;0.0375544551412588!GO:0005862;muscle thin filament tropomyosin;0.0377914132582457!GO:0048487;beta-tubulin binding;0.0380725893948599!GO:0043022;ribosome binding;0.0383769450624738!GO:0031529;ruffle organization and biogenesis;0.0385703462604901!GO:0008097;5S rRNA binding;0.0395591778203061!GO:0030162;regulation of proteolysis;0.0401775610473089!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0404618139012738!GO:0051188;cofactor biosynthetic process;0.0405772838007879!GO:0007028;cytoplasm organization and biogenesis;0.040602723166265!GO:0007004;telomere maintenance via telomerase;0.0410403043287792!GO:0030032;lamellipodium biogenesis;0.0412426783051557!GO:0031497;chromatin assembly;0.0417575309309805!GO:0006260;DNA replication;0.0428737315841285!GO:0048660;regulation of smooth muscle cell proliferation;0.0429933677587882!GO:0006650;glycerophospholipid metabolic process;0.0430855346919439!GO:0006693;prostaglandin metabolic process;0.0433543944888494!GO:0006692;prostanoid metabolic process;0.0433543944888494!GO:0000060;protein import into nucleus, translocation;0.0433543944888494!GO:0050811;GABA receptor binding;0.0442005267401974!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0442005267401974!GO:0048659;smooth muscle cell proliferation;0.0459800736593497!GO:0006281;DNA repair;0.0460934973348629!GO:0014706;striated muscle development;0.0460934973348629!GO:0031272;regulation of pseudopodium formation;0.0463183844729488!GO:0031269;pseudopodium formation;0.0463183844729488!GO:0031344;regulation of cell projection organization and biogenesis;0.0463183844729488!GO:0031268;pseudopodium organization and biogenesis;0.0463183844729488!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0463183844729488!GO:0031274;positive regulation of pseudopodium formation;0.0463183844729488!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0471687510802905!GO:0007569;cell aging;0.0473029502195528!GO:0003682;chromatin binding;0.0476723179455718!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0481233144728196!GO:0009117;nucleotide metabolic process;0.0490601229769382
|sample_id=10013
|sample_note=
|sample_sex=female
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=cervix
|top_motifs=TFAP2{A,C}:2.78841791972;HBP1_HMGB_SSRP1_UBTF:2.66418199955;TBP:2.59701902244;MYBL2:2.56406023213;MZF1:2.44824711218;MAZ:2.37605828308;SRF:2.32687504132;PRDM1:2.0414836141;RBPJ:1.9928431499;GTF2I:1.96508492723;NFATC1..3:1.96456406655;MYFfamily:1.96328329408;PATZ1:1.94656173308;RREB1:1.9301016147;T:1.92369965392;SP1:1.89683222458;SMAD1..7,9:1.87849452569;SPZ1:1.8580446519;ZNF238:1.80054918696;TFCP2:1.78166297792;TFAP4:1.77962060421;MED-1{core}:1.62538099308;FOX{D1,D2}:1.60862112423;HMX1:1.58635573867;TLX1..3_NFIC{dimer}:1.57951442735;IKZF1:1.55299649151;FOXO1,3,4:1.52068051217;XCPE1{core}:1.51087171808;GCM1,2:1.47423587098;ESR1:1.43125832553;ZNF384:1.42820423251;PAX5:1.41840292539;MTE{core}:1.36168130102;EP300:1.34604240096;ZIC1..3:1.32620001478;HIC1:1.31541993312;XBP1:1.31185547712;TAL1_TCF{3,4,12}:1.29909101468;KLF4:1.27090424711;TFAP2B:1.26811036076;GATA4:1.25663396415;GTF2A1,2:1.23667851969;NR1H4:1.19971727229;NKX2-3_NKX2-5:1.19684641426;TLX2:1.19148512594;EGR1..3:1.18740722222;AR:1.16499251617;CDC5L:1.15885426144;ZNF423:1.14814143823;NANOG:1.102724901;MTF1:1.08809810104;TEAD1:1.0827407704;NKX2-1,4:1.07643584323;ZNF148:1.05457788563;NR3C1:1.02602104519;POU5F1:1.02315125256;GLI1..3:1.01750571477;TBX4,5:1.01535101169;MEF2{A,B,C,D}:0.979118720032;FOXM1:0.898384541259;FOX{I1,J2}:0.863745543426;BPTF:0.862516753192;SOX5:0.835227657119;FOXP1:0.817571328841;GFI1B:0.816475566008;POU3F1..4:0.800482083573;BREu{core}:0.783894064376;PAX1,9:0.778452730138;STAT1,3:0.753657593182;POU2F1..3:0.715175035238;RFX2..5_RFXANK_RFXAP:0.678125301967;NHLH1,2:0.668005521573;SNAI1..3:0.666736187373;POU6F1:0.652478700962;TEF:0.630920105518;HSF1,2:0.616181633554;IRF7:0.603749628904;ADNP_IRX_SIX_ZHX:0.58556188689;HOX{A6,A7,B6,B7}:0.578746948857;IKZF2:0.565389133842;RXRA_VDR{dimer}:0.563907864659;HAND1,2:0.559507693427;GZF1:0.542648782378;FOXN1:0.502390953392;TGIF1:0.484000613926;ZFP161:0.458904100421;ALX4:0.456260801489;ZEB1:0.454683447298;FOXL1:0.445481810129;ATF6:0.442143297693;DBP:0.442133411688;SOX2:0.438783351766;TP53:0.438055247062;FOXD3:0.412131472444;ETS1,2:0.383234016538;REST:0.365481302949;EBF1:0.333111864382;LMO2:0.285072211525;VSX1,2:0.282673278109;IRF1,2:0.277881639669;NKX6-1,2:0.239702783208;MAFB:0.23529657948;PITX1..3:0.22593785283;NR5A1,2:0.22415411019;RXR{A,B,G}:0.1635403803;HNF1A:0.136215248753;SPIB:0.130552496904;GFI1:0.125026577515;POU1F1:0.122944798064;NKX3-2:0.0980797644744;STAT2,4,6:0.0820950859654;RFX1:0.0622102722891;ATF2:0.0435852807468;HOX{A4,D4}:0.0401369975699;ALX1:0.0229090773248;SREBF1,2:0.0183122457425;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.00379342179742;UFEwm:-0.00571726424107;CDX1,2,4:-0.0469839426088;FOXQ1:-0.049721280653;PRRX1,2:-0.0592084510019;PAX6:-0.0740725930546;TOPORS:-0.091335341039;ATF4:-0.100509576871;SPI1:-0.116863749423;GATA6:-0.12017256239;ZBTB6:-0.120858799369;PBX1:-0.125873531867;CRX:-0.144929155467;NR6A1:-0.148470871281;ELF1,2,4:-0.15762856181;AHR_ARNT_ARNT2:-0.158113904972;ARID5B:-0.164426393237;ZNF143:-0.169323041345;NFIL3:-0.172336390214;ESRRA:-0.197021208519;HNF4A_NR2F1,2:-0.203567201077;JUN:-0.203684155018;SOX{8,9,10}:-0.229287671114;CUX2:-0.248274958403;LHX3,4:-0.330683785941;NFIX:-0.332947477311;AIRE:-0.335104656767;RUNX1..3:-0.342437679978;SOX17:-0.347001381421;FOS_FOS{B,L1}_JUN{B,D}:-0.356416000848;LEF1_TCF7_TCF7L1,2:-0.36843540368;CEBPA,B_DDIT3:-0.387439622238;FOSL2:-0.39205931299;PAX3,7:-0.392962956347;PDX1:-0.425367502023;FOXA2:-0.429863892409;HLF:-0.439011740808;NRF1:-0.445260206341;CREB1:-0.458354736344;NFKB1_REL_RELA:-0.474565989917;FOX{F1,F2,J1}:-0.508528183042;TFDP1:-0.519999109166;NFE2:-0.524596985268;HES1:-0.54353157358;E2F1..5:-0.545211692512;BACH2:-0.571318134141;FOXP3:-0.58236260042;RORA:-0.582821901417;MYOD1:-0.612343329394;NKX2-2,8:-0.688132881863;NFY{A,B,C}:-0.699054181113;ZBTB16:-0.709909780609;DMAP1_NCOR{1,2}_SMARC:-0.711539698724;PAX4:-0.746353490309;EVI1:-0.761273140894;PPARG:-0.770576967901;YY1:-0.795844346768;ATF5_CREB3:-0.800389556074;NFE2L2:-0.818516053879;HMGA1,2:-0.833907930821;ONECUT1,2:-0.915967365748;NANOG{mouse}:-0.92514125898;bHLH_family:-0.949045969618;PAX2:-0.98496987309;OCT4_SOX2{dimer}:-1.0257076622;EN1,2:-1.04611939704;HOX{A5,B5}:-1.06681190245;NFE2L1:-1.11950628543;HIF1A:-1.26170384115;ELK1,4_GABP{A,B1}:-1.37849715045;NKX3-1:-1.41460366009;MYB:-1.42430972978;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.53655093804;PAX8:-1.95044913739;STAT5{A,B}:-2.0703098399;HOXA9_MEIS1:-2.2025838615
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10013-101C4;search_select_hide=table117:FF:10013-101C4
}}
}}

Latest revision as of 12:13, 3 June 2020

Name:cervix, adult, pool1
Species:Human (Homo sapiens)
Library ID:CNhs10618
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuecervix
dev stage40,46,57,65 years old adult
sexfemale
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyAmbion
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number0910061 -4
catalog numberCat:AM6000 Lot:0910061 -4
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-ToTALLY-RNA-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004902
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10618 CAGE DRX008636 DRR009508
Accession ID Hg19

Library idBAMCTSS
CNhs10618 DRZ000933 DRZ002318
Accession ID Hg38

Library idBAMCTSS
CNhs10618 DRZ012283 DRZ013668
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.103
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.252
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0.0902
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0322
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.0288
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.369
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0322
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.208
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.0754
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.248
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0.0322
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.044
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.117
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.0322
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0.0322
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0.0622
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.257
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.162
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0.0322
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0.0902
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0.706
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0526
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.0322
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.378
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.0902
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.00232
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0.0902
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70.642
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.308
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0.0902
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.226
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.301
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0.198
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.576
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.0322
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.0322
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.00589
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.117
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0.0322
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.0322
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.0322
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.0322
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.491
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0622
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.165
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.284
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.317
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.187
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.0322
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0.301
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0.418
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.117
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.266
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0.248
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0.0622
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.0193
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.0289
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0.0322
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0.0322
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10618

Jaspar motifP-value
MA0002.20.00264
MA0003.10.381
MA0004.10.0267
MA0006.10.486
MA0007.10.446
MA0009.10.61
MA0014.10.371
MA0017.10.0518
MA0018.20.0824
MA0019.10.42
MA0024.10.194
MA0025.10.625
MA0027.10.595
MA0028.11.01315e-4
MA0029.10.138
MA0030.10.0066
MA0031.10.0527
MA0035.20.0728
MA0038.10.874
MA0039.20.937
MA0040.10.698
MA0041.10.858
MA0042.10.675
MA0043.10.0637
MA0046.10.316
MA0047.20.382
MA0048.10.205
MA0050.10.997
MA0051.10.585
MA0052.10.0168
MA0055.10.00122
MA0057.10.949
MA0058.10.00854
MA0059.16.82312e-4
MA0060.10.0105
MA0061.10.00121
MA0062.21.85327e-7
MA0065.20.0054
MA0066.10.127
MA0067.10.0565
MA0068.17.83677e-5
MA0069.10.861
MA0070.10.242
MA0071.10.073
MA0072.10.157
MA0073.10.63
MA0074.10.989
MA0076.15.48922e-5
MA0077.10.778
MA0078.10.168
MA0079.20.321
MA0080.20.00272
MA0081.10.0659
MA0083.14.64471e-4
MA0084.10.91
MA0087.10.158
MA0088.10.023
MA0090.10.12
MA0091.10.656
MA0092.10.99
MA0093.10.0292
MA0099.24.178e-11
MA0100.10.0873
MA0101.10.00249
MA0102.20.829
MA0103.10.399
MA0104.24.84691e-4
MA0105.12.34383e-6
MA0106.10.112
MA0107.10.00627
MA0108.23.85172e-13
MA0111.10.559
MA0112.20.155
MA0113.10.539
MA0114.10.00886
MA0115.10.0119
MA0116.14.63139e-4
MA0117.10.341
MA0119.10.312
MA0122.10.597
MA0124.10.84
MA0125.10.285
MA0131.10.295
MA0135.10.414
MA0136.11.81828e-4
MA0137.20.855
MA0138.20.615
MA0139.10.226
MA0140.10.0119
MA0141.10.00445
MA0142.10.143
MA0143.10.865
MA0144.10.988
MA0145.10.276
MA0146.10.402
MA0147.12.2197e-4
MA0148.10.83
MA0149.10.0142
MA0150.17.45314e-6
MA0152.10.225
MA0153.10.0619
MA0154.10.0535
MA0155.10.692
MA0156.11.41917e-4
MA0157.10.672
MA0159.10.0606
MA0160.10.0101
MA0162.10.712
MA0163.19.09154e-9
MA0164.10.218
MA0258.10.19
MA0259.10.0431



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10618

Novel motifP-value
10.0123
100.0322
1000.0886
1010.916
1020.382
1030.108
1040.595
1050.804
1060.633
1070.36
1080.979
1090.0121
110.0494
1100.171
1110.00282
1120.944
1130.143
1140.00295
1150.436
1160.74
1170.0189
1180.0495
1190.291
120.482
1200.0828
1210.733
1220.89
1230.0611
1240.766
1250.178
1260.768
1270.226
1280.949
1290.349
130.0532
1300.664
1310.289
1320.0685
1330.0049
1340.11
1350.352
1360.347
1370.336
1380.558
1390.311
140.823
1400.212
1410.765
1420.678
1430.00809
1440.781
1450.56
1460.92
1470.751
1480.191
1490.302
150.0335
1500.383
1510.652
1520.705
1530.338
1540.885
1550.351
1560.949
1570.494
1580.435
1590.423
160.233
1600.69
1610.425
1620.167
1630.415
1640.0536
1650.875
1660.242
1670.0268
1680.603
1690.489
170.461
180.0245
190.6
20.149
200.137
210.335
220.977
230.74
240.481
250.304
260.0245
270.98
280.704
290.00863
30.199
300.0439
310.966
320.63
330.138
340.461
350.246
360.0134
370.136
380.486
390.373
40.216
400.0297
410.0452
420.296
430.182
440.354
450.236
460.0935
470.0598
480.181
490.0897
50.511
500.629
510.685
520.356
530.817
540.919
550.932
560.681
570.139
580.565
590.906
60.72
600.86
610.373
620.308
630.521
640.2
650.566
660.0282
670.525
680.75
690.421
70.216
700.0343
710.0366
720.729
730.0593
740.229
750.00913
760.0371
770.41
780.128
790.824
80.178
800.193
810.541
820.854
830.526
840.899
850.765
860.647
870.0412
880.8
890.846
90.596
900.0772
910.712
920.991
930.057
940.0454
950.00543
960.193
970.781
980.102
990.268



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10618


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000002 (uterine cervix)
0000995 (uterus)
0003134 (female reproductive organ)
0000479 (tissue)
0001560 (neck of organ)
0005156 (reproductive structure)
0000064 (organ part)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0003975 (internal female genitalia)
0004175 (internal genitalia)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0000474 (female reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010013 (human cervix - adult sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)

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