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(Created page with "{{f5samples |id=FF:10636-108I6 |name=clear cell carcinoma cell line:TEN, biol_rep1 |sample_id=10636 |rna_tube_id=108I6 |rna_box=108 |rna_position=I6 |sample_cell_lot= ...")
 
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{{f5samples
{{f5samples
|id=FF:10636-108I6
|DRA_sample_Accession=CAGE@SAMD00005352
|name=clear cell carcinoma cell line:TEN, biol_rep1
|accession_numbers=CAGE;DRX007861;DRR008733;DRZ000158;DRZ001543;DRZ011508;DRZ012893
|sample_id=10636
|rna_tube_id=108I6
|rna_box=108
|rna_position=I6
|sample_cell_lot=
|sample_cell_catalog=RCB1433
|sample_company=RIKEN Bioresource centre
|rna_lot_number=
|rna_catalog_number=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=endometrium
|sample_donor(cell lot)=
|sample_sex=female
|sample_age=74
|sample_ethnicity=J
|rna_rin=
|rna_od260/230=1.48000
|rna_od260/280=2.07000
|sample_cell_type=unclassifiable
|sample_cell_line=TEN
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_experimental_condition=
|sample_disease=clear cell carcinoma
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=17.00507
|rna_concentration=0.36181
|sample_note=
|profile_hcage=CNhs11930,LSID835,release010,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000255,CL:0000548
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_disease_facet=DOID:0050686,DOID:0050687,DOID:120,DOID:14566,DOID:162,DOID:193,DOID:299,DOID:305,DOID:4,DOID:4468
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
|sample_description=
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:193,DOID:305,DOID:120,DOID:299,DOID:4468
 
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0100167,FF:0102787
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
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|fonse_cell_line=FF:0101120
|fonse_cell_line=FF:0101120
|fonse_cell_line_closure=FF:0101120
|fonse_cell_line_closure=FF:0101120
Line 67: Line 39:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/clear%2520cell%2520carcinoma%2520cell%2520line%253aTEN.CNhs11930.10636-108I6.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/clear%2520cell%2520carcinoma%2520cell%2520line%253aTEN.CNhs11930.10636-108I6.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/clear%2520cell%2520carcinoma%2520cell%2520line%253aTEN.CNhs11930.10636-108I6.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/clear%2520cell%2520carcinoma%2520cell%2520line%253aTEN.CNhs11930.10636-108I6.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/clear%2520cell%2520carcinoma%2520cell%2520line%253aTEN.CNhs11930.10636-108I6.hg38.nobarcode.ctss.bed.gz
|id=FF:10636-108I6
|is_a=EFO:0002091;;FF:0000210;;FF:0102787
|is_obsolete=
|library_id=CNhs11930
|library_id_phase_based=2:CNhs11930
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10636
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10636
|name=clear cell carcinoma cell line:TEN
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs11930,LSID835,release010,COMPLETED
|profile_rnaseq=
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=108
|rna_catalog_number=
|rna_concentration=0.36181
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=1.48
|rna_od260/280=2.07
|rna_position=I6
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=108I6
|rna_weight_ug=17.00507
|sample_age=74
|sample_category=cell lines
|sample_cell_catalog=RCB1433
|sample_cell_line=TEN
|sample_cell_lot=
|sample_cell_type=unclassifiable
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_company=RIKEN Bioresource centre
|sample_description=
|sample_dev_stage=
|sample_disease=clear cell carcinoma
|sample_donor(cell lot)=
|sample_ethnicity=J
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.74500757165068e-242!GO:0043226;organelle;3.15865771259387e-201!GO:0043229;intracellular organelle;1.38965704863568e-200!GO:0043231;intracellular membrane-bound organelle;2.79448456962724e-199!GO:0043227;membrane-bound organelle;2.92763069433015e-199!GO:0005737;cytoplasm;2.73095601190538e-176!GO:0044422;organelle part;5.65456324010981e-159!GO:0044446;intracellular organelle part;3.40351660219628e-157!GO:0044444;cytoplasmic part;3.40483643859052e-122!GO:0032991;macromolecular complex;1.63174448135072e-99!GO:0044237;cellular metabolic process;1.08218304074389e-91!GO:0044238;primary metabolic process;1.31580474783738e-88!GO:0005634;nucleus;6.19922615706847e-87!GO:0030529;ribonucleoprotein complex;1.73884361104447e-84!GO:0044428;nuclear part;1.01442082375187e-82!GO:0043170;macromolecule metabolic process;4.98220222585098e-81!GO:0043233;organelle lumen;1.03788910580321e-74!GO:0031974;membrane-enclosed lumen;1.03788910580321e-74!GO:0003723;RNA binding;9.02278281209015e-72!GO:0005515;protein binding;1.1213725021825e-66!GO:0005739;mitochondrion;3.21232155242003e-61!GO:0031090;organelle membrane;2.05971487278331e-53!GO:0005840;ribosome;1.57040524195978e-50!GO:0043234;protein complex;2.07780558350872e-50!GO:0006396;RNA processing;3.97348284476717e-50!GO:0043283;biopolymer metabolic process;1.34953940122948e-48!GO:0016043;cellular component organization and biogenesis;2.00192263198932e-48!GO:0031981;nuclear lumen;5.89377239874533e-48!GO:0006412;translation;8.10766336326985e-48!GO:0019538;protein metabolic process;1.68818409984321e-47!GO:0003735;structural constituent of ribosome;1.58534975597482e-44!GO:0015031;protein transport;1.35327292432886e-43!GO:0033036;macromolecule localization;1.14819526803389e-42!GO:0044267;cellular protein metabolic process;4.6551234590928e-42!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.29009800484737e-42!GO:0044260;cellular macromolecule metabolic process;8.84052664388034e-42!GO:0016071;mRNA metabolic process;4.3045631925734e-41!GO:0009058;biosynthetic process;8.75506229627516e-41!GO:0031967;organelle envelope;1.3917518111774e-40!GO:0043228;non-membrane-bound organelle;1.42984094276404e-40!GO:0043232;intracellular non-membrane-bound organelle;1.42984094276404e-40!GO:0031975;envelope;2.48782119791453e-40!GO:0044249;cellular biosynthetic process;4.80306566053628e-40!GO:0044429;mitochondrial part;1.00656370967443e-39!GO:0010467;gene expression;1.55885391608833e-39!GO:0033279;ribosomal subunit;6.61424447370224e-39!GO:0008104;protein localization;1.80883078968219e-38!GO:0046907;intracellular transport;2.2716649845417e-38!GO:0045184;establishment of protein localization;5.11359847630262e-38!GO:0006996;organelle organization and biogenesis;1.80248477381744e-37!GO:0008380;RNA splicing;4.83846009112605e-37!GO:0006259;DNA metabolic process;5.95569911015634e-36!GO:0009059;macromolecule biosynthetic process;1.01448781419989e-35!GO:0006397;mRNA processing;3.49877375018618e-35!GO:0065003;macromolecular complex assembly;4.21978218737826e-35!GO:0005829;cytosol;1.23699178579536e-33!GO:0022607;cellular component assembly;1.35588222335433e-31!GO:0007049;cell cycle;3.18703573914497e-31!GO:0006886;intracellular protein transport;5.05444803853381e-31!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.66148832879826e-29!GO:0005654;nucleoplasm;3.6637552567229e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.5887001376706e-27!GO:0005681;spliceosome;2.64481680408127e-27!GO:0012505;endomembrane system;1.70020643213242e-25!GO:0019866;organelle inner membrane;3.02823980669221e-25!GO:0005740;mitochondrial envelope;5.94640731321896e-25!GO:0000166;nucleotide binding;3.36093110750112e-24!GO:0051649;establishment of cellular localization;3.4887314661513e-24!GO:0031966;mitochondrial membrane;1.09267186987304e-23!GO:0022402;cell cycle process;1.15428940294878e-23!GO:0051641;cellular localization;1.64398232164453e-23!GO:0003676;nucleic acid binding;2.09987003650824e-23!GO:0044451;nucleoplasm part;2.95163857706434e-23!GO:0005743;mitochondrial inner membrane;6.8959950276025e-23!GO:0000278;mitotic cell cycle;7.39196376901616e-23!GO:0044445;cytosolic part;4.33733665782075e-22!GO:0015934;large ribosomal subunit;4.1787398421663e-21!GO:0044265;cellular macromolecule catabolic process;9.46436773816319e-21!GO:0006974;response to DNA damage stimulus;1.64036131021051e-20!GO:0016462;pyrophosphatase activity;2.52548406714528e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.86660283510333e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;3.61302845154428e-20!GO:0005694;chromosome;6.06490936770539e-20!GO:0022403;cell cycle phase;9.2888399397534e-20!GO:0000087;M phase of mitotic cell cycle;1.66489075320152e-19!GO:0017111;nucleoside-triphosphatase activity;1.93788385082049e-19!GO:0006457;protein folding;3.79595297145525e-19!GO:0005730;nucleolus;3.8344802862095e-19!GO:0007067;mitosis;4.26583797100699e-19!GO:0015935;small ribosomal subunit;8.770157713576e-19!GO:0044427;chromosomal part;1.57297534654725e-18!GO:0016070;RNA metabolic process;2.3802890906462e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;3.73864701408094e-18!GO:0031980;mitochondrial lumen;4.62662758075062e-18!GO:0005759;mitochondrial matrix;4.62662758075062e-18!GO:0006511;ubiquitin-dependent protein catabolic process;5.79746993957505e-18!GO:0006119;oxidative phosphorylation;6.10560609178305e-18!GO:0019941;modification-dependent protein catabolic process;6.20534536574548e-18!GO:0043632;modification-dependent macromolecule catabolic process;6.20534536574548e-18!GO:0005783;endoplasmic reticulum;7.57798052697161e-18!GO:0006281;DNA repair;1.00074379596199e-17!GO:0044257;cellular protein catabolic process;1.08114137038947e-17!GO:0022618;protein-RNA complex assembly;1.31493948483382e-17!GO:0016874;ligase activity;1.40120015482971e-17!GO:0000279;M phase;1.69468865101957e-17!GO:0043285;biopolymer catabolic process;2.05079212760824e-17!GO:0044432;endoplasmic reticulum part;2.05079212760824e-17!GO:0051301;cell division;2.25914295747666e-17!GO:0009057;macromolecule catabolic process;3.02756430059169e-17!GO:0005635;nuclear envelope;6.55959027038438e-17!GO:0044455;mitochondrial membrane part;6.68840210558934e-17!GO:0032553;ribonucleotide binding;9.96011832651648e-17!GO:0032555;purine ribonucleotide binding;9.96011832651648e-17!GO:0051276;chromosome organization and biogenesis;1.04100896205209e-16!GO:0044248;cellular catabolic process;2.01330687893102e-16!GO:0008134;transcription factor binding;2.95370754955703e-16!GO:0006512;ubiquitin cycle;3.38545340178531e-16!GO:0017076;purine nucleotide binding;4.46575847399583e-16!GO:0006260;DNA replication;6.13962770770085e-16!GO:0000502;proteasome complex (sensu Eukaryota);1.2562904510793e-15!GO:0006605;protein targeting;1.34801420729128e-15!GO:0051082;unfolded protein binding;1.86903248773336e-15!GO:0008135;translation factor activity, nucleic acid binding;3.7541373264966e-15!GO:0030163;protein catabolic process;6.4093251035726e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);7.03234473196853e-15!GO:0031965;nuclear membrane;7.93918952829151e-15!GO:0005524;ATP binding;9.54114867484991e-15!GO:0048770;pigment granule;1.39865014586418e-14!GO:0042470;melanosome;1.39865014586418e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.61938880219853e-14!GO:0009719;response to endogenous stimulus;2.96829649230616e-14!GO:0005794;Golgi apparatus;3.01618423408767e-14!GO:0005761;mitochondrial ribosome;3.73962494080409e-14!GO:0000313;organellar ribosome;3.73962494080409e-14!GO:0032559;adenyl ribonucleotide binding;3.84827971370697e-14!GO:0051186;cofactor metabolic process;4.3503399602346e-14!GO:0044453;nuclear membrane part;7.50821063399718e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;8.10950697688254e-14!GO:0000375;RNA splicing, via transesterification reactions;8.10950697688254e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;8.10950697688254e-14!GO:0043412;biopolymer modification;1.43809059334429e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.44429382865569e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.83974345778168e-13!GO:0030554;adenyl nucleotide binding;2.24222115240735e-13!GO:0005789;endoplasmic reticulum membrane;2.83271005421547e-13!GO:0050136;NADH dehydrogenase (quinone) activity;2.83271005421547e-13!GO:0003954;NADH dehydrogenase activity;2.83271005421547e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.83271005421547e-13!GO:0006325;establishment and/or maintenance of chromatin architecture;7.92184974839824e-13!GO:0012501;programmed cell death;8.07480022439286e-13!GO:0042254;ribosome biogenesis and assembly;9.27302699717722e-13!GO:0006915;apoptosis;1.50098129303037e-12!GO:0016887;ATPase activity;3.13283730301176e-12!GO:0006323;DNA packaging;3.20567781356307e-12!GO:0006732;coenzyme metabolic process;3.22032583431641e-12!GO:0005746;mitochondrial respiratory chain;5.31117856022781e-12!GO:0042623;ATPase activity, coupled;5.706571349733e-12!GO:0048193;Golgi vesicle transport;1.30811569455001e-11!GO:0005643;nuclear pore;1.32222848869297e-11!GO:0006464;protein modification process;1.53144339800695e-11!GO:0016604;nuclear body;1.96898479027216e-11!GO:0008219;cell death;2.17813269558436e-11!GO:0016265;death;2.17813269558436e-11!GO:0006403;RNA localization;2.34791480745684e-11!GO:0030964;NADH dehydrogenase complex (quinone);2.34791480745684e-11!GO:0045271;respiratory chain complex I;2.34791480745684e-11!GO:0005747;mitochondrial respiratory chain complex I;2.34791480745684e-11!GO:0004386;helicase activity;2.72299187906125e-11!GO:0050657;nucleic acid transport;2.84397829318093e-11!GO:0051236;establishment of RNA localization;2.84397829318093e-11!GO:0050658;RNA transport;2.84397829318093e-11!GO:0003743;translation initiation factor activity;4.0017086495682e-11!GO:0000074;regulation of progression through cell cycle;4.046920962328e-11!GO:0051726;regulation of cell cycle;4.87527071431594e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;5.11682277611785e-11!GO:0006913;nucleocytoplasmic transport;6.89494716140605e-11!GO:0016192;vesicle-mediated transport;7.83048900634391e-11!GO:0065004;protein-DNA complex assembly;1.08950986948997e-10!GO:0006413;translational initiation;1.22416334613058e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.4078999204945e-10!GO:0006446;regulation of translational initiation;1.70840064457681e-10!GO:0051169;nuclear transport;1.76982305547157e-10!GO:0006461;protein complex assembly;2.2734649360867e-10!GO:0006399;tRNA metabolic process;2.32897396472584e-10!GO:0008565;protein transporter activity;3.93811964535232e-10!GO:0042775;organelle ATP synthesis coupled electron transport;4.69779183275702e-10!GO:0042773;ATP synthesis coupled electron transport;4.69779183275702e-10!GO:0065002;intracellular protein transport across a membrane;4.69779183275702e-10!GO:0003712;transcription cofactor activity;4.95784091879322e-10!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;5.18627860277028e-10!GO:0009056;catabolic process;5.83868157888154e-10!GO:0015630;microtubule cytoskeleton;6.46414364990028e-10!GO:0043687;post-translational protein modification;7.30566382558172e-10!GO:0009055;electron carrier activity;9.91248883891085e-10!GO:0006333;chromatin assembly or disassembly;1.42609262655078e-09!GO:0000785;chromatin;1.58496696754439e-09!GO:0051028;mRNA transport;3.17247385376708e-09!GO:0008026;ATP-dependent helicase activity;3.23273012601139e-09!GO:0009259;ribonucleotide metabolic process;3.70161048292115e-09!GO:0008639;small protein conjugating enzyme activity;4.81724621696122e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;5.7152407120005e-09!GO:0016607;nuclear speck;6.36648658054218e-09!GO:0046930;pore complex;6.67921336460387e-09!GO:0006163;purine nucleotide metabolic process;7.27497679977062e-09!GO:0004842;ubiquitin-protein ligase activity;8.19594721091915e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;8.73098889760085e-09!GO:0030532;small nuclear ribonucleoprotein complex;1.10728102050958e-08!GO:0006164;purine nucleotide biosynthetic process;1.13135547007011e-08!GO:0019787;small conjugating protein ligase activity;1.28178700612821e-08!GO:0043069;negative regulation of programmed cell death;1.42132009309307e-08!GO:0006366;transcription from RNA polymerase II promoter;1.63444961060916e-08!GO:0009260;ribonucleotide biosynthetic process;2.00144888421226e-08!GO:0043067;regulation of programmed cell death;2.04647979580157e-08!GO:0005793;ER-Golgi intermediate compartment;2.05702341169919e-08!GO:0007005;mitochondrion organization and biogenesis;2.30676112457307e-08!GO:0042981;regulation of apoptosis;2.48424450589331e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.57604443694764e-08!GO:0017038;protein import;2.57604443694764e-08!GO:0048475;coated membrane;2.73966032180305e-08!GO:0030117;membrane coat;2.73966032180305e-08!GO:0000775;chromosome, pericentric region;3.40421942848979e-08!GO:0006364;rRNA processing;3.93813655217985e-08!GO:0043066;negative regulation of apoptosis;4.34741930230439e-08!GO:0009150;purine ribonucleotide metabolic process;4.85284272270769e-08!GO:0016072;rRNA metabolic process;5.93969084158872e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;6.6617366585461e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;6.81644937437888e-08!GO:0004812;aminoacyl-tRNA ligase activity;6.81644937437888e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;6.81644937437888e-08!GO:0009152;purine ribonucleotide biosynthetic process;7.53199438933842e-08!GO:0051188;cofactor biosynthetic process;8.17594811193993e-08!GO:0005768;endosome;8.28061726209663e-08!GO:0043038;amino acid activation;1.08374632624289e-07!GO:0006418;tRNA aminoacylation for protein translation;1.08374632624289e-07!GO:0043039;tRNA aminoacylation;1.08374632624289e-07!GO:0006261;DNA-dependent DNA replication;1.11358567399545e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.1692969970348e-07!GO:0016881;acid-amino acid ligase activity;1.39424681391303e-07!GO:0009142;nucleoside triphosphate biosynthetic process;1.47158705382423e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.47158705382423e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.53842245949499e-07!GO:0030120;vesicle coat;1.86775858863435e-07!GO:0030662;coated vesicle membrane;1.86775858863435e-07!GO:0006334;nucleosome assembly;1.90943191072164e-07!GO:0016568;chromatin modification;2.01517636038347e-07!GO:0016787;hydrolase activity;2.25194847027397e-07!GO:0005667;transcription factor complex;2.28174723135465e-07!GO:0050794;regulation of cellular process;2.3106869715875e-07!GO:0015986;ATP synthesis coupled proton transport;2.42627330802457e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.42627330802457e-07!GO:0009199;ribonucleoside triphosphate metabolic process;2.53517303466247e-07!GO:0009141;nucleoside triphosphate metabolic process;3.38569058519739e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.39147998385274e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.39147998385274e-07!GO:0006916;anti-apoptosis;3.39147998385274e-07!GO:0005819;spindle;4.9995375909946e-07!GO:0009108;coenzyme biosynthetic process;5.48055731894829e-07!GO:0005839;proteasome core complex (sensu Eukaryota);5.50251436366727e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.56469734699859e-07!GO:0009144;purine nucleoside triphosphate metabolic process;5.56469734699859e-07!GO:0043623;cellular protein complex assembly;6.4933059765963e-07!GO:0031497;chromatin assembly;6.6063222164026e-07!GO:0043566;structure-specific DNA binding;7.18749122386783e-07!GO:0004298;threonine endopeptidase activity;7.20441344935025e-07!GO:0044431;Golgi apparatus part;7.53160743507965e-07!GO:0016740;transferase activity;7.95529323107004e-07!GO:0032446;protein modification by small protein conjugation;9.39049303771247e-07!GO:0007051;spindle organization and biogenesis;9.77190057770107e-07!GO:0000245;spliceosome assembly;1.11487787938744e-06!GO:0005657;replication fork;1.22731151535163e-06!GO:0044440;endosomal part;1.25241993734332e-06!GO:0010008;endosome membrane;1.25241993734332e-06!GO:0005815;microtubule organizing center;1.30721703074398e-06!GO:0016567;protein ubiquitination;1.66109443559685e-06!GO:0019829;cation-transporting ATPase activity;1.6811870503514e-06!GO:0051329;interphase of mitotic cell cycle;1.77470767736569e-06!GO:0051325;interphase;1.90372062689893e-06!GO:0009117;nucleotide metabolic process;1.99775322654657e-06!GO:0005813;centrosome;2.06859540236181e-06!GO:0051246;regulation of protein metabolic process;3.03830936679422e-06!GO:0006754;ATP biosynthetic process;3.09177567357613e-06!GO:0006753;nucleoside phosphate metabolic process;3.09177567357613e-06!GO:0009060;aerobic respiration;3.47369171831806e-06!GO:0016469;proton-transporting two-sector ATPase complex;3.64882081095846e-06!GO:0006099;tricarboxylic acid cycle;4.61228017925697e-06!GO:0046356;acetyl-CoA catabolic process;4.61228017925697e-06!GO:0048523;negative regulation of cellular process;4.86775999451771e-06!GO:0006752;group transfer coenzyme metabolic process;4.98993682388556e-06!GO:0046034;ATP metabolic process;6.02420971704375e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;6.19715725599063e-06!GO:0051170;nuclear import;6.39146471897752e-06!GO:0006613;cotranslational protein targeting to membrane;6.6968590487975e-06!GO:0003724;RNA helicase activity;6.74378080837875e-06!GO:0045333;cellular respiration;7.56894383916561e-06!GO:0045259;proton-transporting ATP synthase complex;7.88567319474789e-06!GO:0005770;late endosome;9.23502781634011e-06!GO:0000075;cell cycle checkpoint;9.82057960792855e-06!GO:0016563;transcription activator activity;1.00762564734767e-05!GO:0003924;GTPase activity;1.03037180415409e-05!GO:0016779;nucleotidyltransferase activity;1.12014229674926e-05!GO:0005773;vacuole;1.13343444487304e-05!GO:0051187;cofactor catabolic process;1.14170329851461e-05!GO:0003697;single-stranded DNA binding;1.1754540538298e-05!GO:0003713;transcription coactivator activity;1.23427879994472e-05!GO:0006084;acetyl-CoA metabolic process;1.36462019785082e-05!GO:0000079;regulation of cyclin-dependent protein kinase activity;1.55847711465001e-05!GO:0005762;mitochondrial large ribosomal subunit;1.60370962749048e-05!GO:0000315;organellar large ribosomal subunit;1.60370962749048e-05!GO:0015078;hydrogen ion transmembrane transporter activity;1.94918435345474e-05!GO:0006606;protein import into nucleus;1.98782048255364e-05!GO:0006302;double-strand break repair;2.07258266369724e-05!GO:0009109;coenzyme catabolic process;2.09857402455483e-05!GO:0006793;phosphorus metabolic process;2.19250254663541e-05!GO:0006796;phosphate metabolic process;2.19250254663541e-05!GO:0000139;Golgi membrane;2.34845186674097e-05!GO:0000151;ubiquitin ligase complex;2.52027887638561e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.65992033204865e-05!GO:0005788;endoplasmic reticulum lumen;2.75513151967748e-05!GO:0007088;regulation of mitosis;3.4819929482187e-05!GO:0016491;oxidoreductase activity;3.64860768684423e-05!GO:0051168;nuclear export;3.75334325627211e-05!GO:0007010;cytoskeleton organization and biogenesis;4.05721674012121e-05!GO:0051427;hormone receptor binding;4.17263443757838e-05!GO:0000323;lytic vacuole;4.37477170156364e-05!GO:0005764;lysosome;4.37477170156364e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.00719693628331e-05!GO:0048519;negative regulation of biological process;5.25816998654078e-05!GO:0008094;DNA-dependent ATPase activity;5.27374931194074e-05!GO:0000226;microtubule cytoskeleton organization and biogenesis;5.39265993678183e-05!GO:0006612;protein targeting to membrane;5.79342335553947e-05!GO:0006839;mitochondrial transport;6.52448413106765e-05!GO:0003690;double-stranded DNA binding;6.59600063359132e-05!GO:0043021;ribonucleoprotein binding;7.53118380992883e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;8.17583783575961e-05!GO:0035257;nuclear hormone receptor binding;8.41071420628387e-05!GO:0000776;kinetochore;8.92489551750551e-05!GO:0051052;regulation of DNA metabolic process;0.000101288153528075!GO:0003899;DNA-directed RNA polymerase activity;0.00011697560180435!GO:0005525;GTP binding;0.000118535468737779!GO:0005798;Golgi-associated vesicle;0.000126334514941683!GO:0008186;RNA-dependent ATPase activity;0.000131507625123709!GO:0019899;enzyme binding;0.00013813443145457!GO:0042802;identical protein binding;0.000139484520869236!GO:0000314;organellar small ribosomal subunit;0.000150908855804142!GO:0005763;mitochondrial small ribosomal subunit;0.000150908855804142!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000164292053669547!GO:0016310;phosphorylation;0.000170499440755808!GO:0033116;ER-Golgi intermediate compartment membrane;0.000173186951350182!GO:0008250;oligosaccharyl transferase complex;0.000187186626810309!GO:0045786;negative regulation of progression through cell cycle;0.000188658276915959!GO:0030867;rough endoplasmic reticulum membrane;0.000190613122624279!GO:0006414;translational elongation;0.000208377904669242!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000208954520848268!GO:0003714;transcription corepressor activity;0.00021316202846608!GO:0048471;perinuclear region of cytoplasm;0.000213945036522703!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000269897884406125!GO:0006520;amino acid metabolic process;0.000275004915647236!GO:0051789;response to protein stimulus;0.000276853434557438!GO:0006986;response to unfolded protein;0.000276853434557438!GO:0050789;regulation of biological process;0.000277630693043108!GO:0031324;negative regulation of cellular metabolic process;0.000290753151847238!GO:0019752;carboxylic acid metabolic process;0.000293008407573972!GO:0016363;nuclear matrix;0.000296664286833766!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000333455786225757!GO:0006401;RNA catabolic process;0.000333678943867166!GO:0006402;mRNA catabolic process;0.000339012173385523!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.00034151244356231!GO:0006352;transcription initiation;0.000350630563846693!GO:0004004;ATP-dependent RNA helicase activity;0.00036132351791754!GO:0008654;phospholipid biosynthetic process;0.000377250587892736!GO:0016564;transcription repressor activity;0.00039822764105051!GO:0006082;organic acid metabolic process;0.000399900335792162!GO:0045454;cell redox homeostasis;0.000414364309340118!GO:0004576;oligosaccharyl transferase activity;0.000418179290255706!GO:0046483;heterocycle metabolic process;0.000440460933133445!GO:0007059;chromosome segregation;0.000447937762567341!GO:0065009;regulation of a molecular function;0.000447937762567341!GO:0043681;protein import into mitochondrion;0.000447937762567341!GO:0005048;signal sequence binding;0.000471586157406172!GO:0048522;positive regulation of cellular process;0.000477202531124655!GO:0005874;microtubule;0.000514813831368009!GO:0005791;rough endoplasmic reticulum;0.000521844390024566!GO:0000786;nucleosome;0.000555133661223534!GO:0003729;mRNA binding;0.000585396737860664!GO:0030118;clathrin coat;0.000597152872200752!GO:0008033;tRNA processing;0.000604052322564859!GO:0031988;membrane-bound vesicle;0.000611313426434483!GO:0007017;microtubule-based process;0.000635123401477458!GO:0018196;peptidyl-asparagine modification;0.000656070892812644!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000656070892812644!GO:0006950;response to stress;0.000695622034103388!GO:0016023;cytoplasmic membrane-bound vesicle;0.000823522037630511!GO:0016126;sterol biosynthetic process;0.000826851397589737!GO:0031902;late endosome membrane;0.000863160260603558!GO:0009892;negative regulation of metabolic process;0.000863160260603558!GO:0051920;peroxiredoxin activity;0.000892376815320008!GO:0030176;integral to endoplasmic reticulum membrane;0.000902942549269113!GO:0003678;DNA helicase activity;0.000914070623556675!GO:0007093;mitotic cell cycle checkpoint;0.000923757805974034!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000929747078285321!GO:0008234;cysteine-type peptidase activity;0.000931801667426409!GO:0030880;RNA polymerase complex;0.000948509727927004!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00101877429224814!GO:0007052;mitotic spindle organization and biogenesis;0.00103478566150657!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00104511101501594!GO:0009165;nucleotide biosynthetic process;0.00105410005655834!GO:0008168;methyltransferase activity;0.00107629205084807!GO:0016741;transferase activity, transferring one-carbon groups;0.00107856794835297!GO:0007264;small GTPase mediated signal transduction;0.00114853529571228!GO:0032561;guanyl ribonucleotide binding;0.00115847930870867!GO:0019001;guanyl nucleotide binding;0.00115847930870867!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00116191526945438!GO:0006626;protein targeting to mitochondrion;0.00118181649246182!GO:0016853;isomerase activity;0.00119533193522039!GO:0030036;actin cytoskeleton organization and biogenesis;0.00132620743138563!GO:0030521;androgen receptor signaling pathway;0.0013765285671951!GO:0019222;regulation of metabolic process;0.00143683687552558!GO:0006310;DNA recombination;0.00148952820765973!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00151490035118924!GO:0015399;primary active transmembrane transporter activity;0.00151490035118924!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00154528598304353!GO:0030659;cytoplasmic vesicle membrane;0.0016241500341793!GO:0000059;protein import into nucleus, docking;0.00164536992887836!GO:0005684;U2-dependent spliceosome;0.00169605476629527!GO:0005769;early endosome;0.00170775969482348!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00174237836628908!GO:0000428;DNA-directed RNA polymerase complex;0.00174237836628908!GO:0048500;signal recognition particle;0.00190710265288249!GO:0005637;nuclear inner membrane;0.00192625427090526!GO:0000086;G2/M transition of mitotic cell cycle;0.00193550848566769!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00196930942517958!GO:0006275;regulation of DNA replication;0.00196930942517958!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00199724591437411!GO:0005885;Arp2/3 protein complex;0.00199724591437411!GO:0007243;protein kinase cascade;0.00207132338176396!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00210266914812436!GO:0005905;coated pit;0.00231191605069009!GO:0030658;transport vesicle membrane;0.00232145146681519!GO:0044452;nucleolar part;0.0024301557082906!GO:0016859;cis-trans isomerase activity;0.00264165089262293!GO:0016272;prefoldin complex;0.0027136662737401!GO:0006383;transcription from RNA polymerase III promoter;0.00271897290559482!GO:0016251;general RNA polymerase II transcription factor activity;0.00283916204441608!GO:0030663;COPI coated vesicle membrane;0.0028481032471813!GO:0030126;COPI vesicle coat;0.0028481032471813!GO:0006405;RNA export from nucleus;0.00287820486746048!GO:0003746;translation elongation factor activity;0.00295804938654327!GO:0006695;cholesterol biosynthetic process;0.00318965111116543!GO:0003682;chromatin binding;0.00318965111116543!GO:0048487;beta-tubulin binding;0.00336263186842105!GO:0015980;energy derivation by oxidation of organic compounds;0.00382516986865175!GO:0016044;membrane organization and biogenesis;0.00383228116992996!GO:0031252;leading edge;0.00386021095888054!GO:0006091;generation of precursor metabolites and energy;0.00386924114187081!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00390103554369433!GO:0015631;tubulin binding;0.00417012862208176!GO:0030029;actin filament-based process;0.00417216700663592!GO:0046489;phosphoinositide biosynthetic process;0.00432417268742269!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00434788225656752!GO:0045047;protein targeting to ER;0.00434788225656752!GO:0009116;nucleoside metabolic process;0.00441683226312413!GO:0051087;chaperone binding;0.00444034521600322!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00445566160553771!GO:0031982;vesicle;0.0044693621406161!GO:0030134;ER to Golgi transport vesicle;0.00452002430357509!GO:0044433;cytoplasmic vesicle part;0.00458907320703071!GO:0006611;protein export from nucleus;0.00458907320703071!GO:0006984;ER-nuclear signaling pathway;0.00469091687288408!GO:0008092;cytoskeletal protein binding;0.00476387612177185!GO:0031072;heat shock protein binding;0.00499155808647381!GO:0030137;COPI-coated vesicle;0.00504721339610281!GO:0000082;G1/S transition of mitotic cell cycle;0.00504721339610281!GO:0008139;nuclear localization sequence binding;0.00516729708742115!GO:0045893;positive regulation of transcription, DNA-dependent;0.00529607788147267!GO:0030660;Golgi-associated vesicle membrane;0.0053020802881281!GO:0008312;7S RNA binding;0.00542656838548217!GO:0009967;positive regulation of signal transduction;0.00554940839145921!GO:0006519;amino acid and derivative metabolic process;0.005634667557063!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00593901495363509!GO:0012506;vesicle membrane;0.00598587274860642!GO:0030119;AP-type membrane coat adaptor complex;0.00598587274860642!GO:0000049;tRNA binding;0.00605370068636065!GO:0046983;protein dimerization activity;0.0061653336092494!GO:0030127;COPII vesicle coat;0.00618534377087977!GO:0012507;ER to Golgi transport vesicle membrane;0.00618534377087977!GO:0043596;nuclear replication fork;0.00631270965005037!GO:0000922;spindle pole;0.00641913603865542!GO:0045941;positive regulation of transcription;0.00652219976157735!GO:0043022;ribosome binding;0.00676269484944326!GO:0031410;cytoplasmic vesicle;0.00676269484944326!GO:0006891;intra-Golgi vesicle-mediated transport;0.00693503739559165!GO:0035258;steroid hormone receptor binding;0.00745265793445065!GO:0005853;eukaryotic translation elongation factor 1 complex;0.00750709664321478!GO:0005876;spindle microtubule;0.00759702701579868!GO:0051101;regulation of DNA binding;0.00760122532462059!GO:0030131;clathrin adaptor complex;0.00812010401230029!GO:0003684;damaged DNA binding;0.00813228086720034!GO:0043433;negative regulation of transcription factor activity;0.00817329467233273!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00825260411696179!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00825260411696179!GO:0019843;rRNA binding;0.00855376660422897!GO:0048468;cell development;0.0086445997572171!GO:0008361;regulation of cell size;0.00875006864748601!GO:0032508;DNA duplex unwinding;0.00922217662274396!GO:0032392;DNA geometric change;0.00922217662274396!GO:0000725;recombinational repair;0.0092370539626167!GO:0000724;double-strand break repair via homologous recombination;0.0092370539626167!GO:0005774;vacuolar membrane;0.00923959200296599!GO:0030518;steroid hormone receptor signaling pathway;0.00927181236710124!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00940134793840747!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00968385263719644!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0105259601378821!GO:0016584;nucleosome positioning;0.010884632929341!GO:0004527;exonuclease activity;0.0110157451737492!GO:0004197;cysteine-type endopeptidase activity;0.0110521461605371!GO:0006807;nitrogen compound metabolic process;0.011200415319426!GO:0051098;regulation of binding;0.0113189991508413!GO:0006730;one-carbon compound metabolic process;0.0114412970120756!GO:0006740;NADPH regeneration;0.0115203265471926!GO:0006098;pentose-phosphate shunt;0.0115203265471926!GO:0006672;ceramide metabolic process;0.0116333940382698!GO:0032259;methylation;0.0116659767785768!GO:0046474;glycerophospholipid biosynthetic process;0.0116677346147766!GO:0051338;regulation of transferase activity;0.0117389495430192!GO:0044262;cellular carbohydrate metabolic process;0.0117465263347116!GO:0051252;regulation of RNA metabolic process;0.0118424297566582!GO:0031968;organelle outer membrane;0.011908936599477!GO:0008022;protein C-terminus binding;0.0121101863930869!GO:0007006;mitochondrial membrane organization and biogenesis;0.0124656447805274!GO:0051540;metal cluster binding;0.0124706169347569!GO:0051536;iron-sulfur cluster binding;0.0124706169347569!GO:0051059;NF-kappaB binding;0.0127212900080763!GO:0006220;pyrimidine nucleotide metabolic process;0.0127248032938115!GO:0046519;sphingoid metabolic process;0.0129457959496643!GO:0005832;chaperonin-containing T-complex;0.0131126451534645!GO:0004674;protein serine/threonine kinase activity;0.0131126451534645!GO:0043488;regulation of mRNA stability;0.0131126451534645!GO:0043487;regulation of RNA stability;0.0131126451534645!GO:0046467;membrane lipid biosynthetic process;0.0131235904405829!GO:0050790;regulation of catalytic activity;0.0131235904405829!GO:0043284;biopolymer biosynthetic process;0.0132856880995992!GO:0006007;glucose catabolic process;0.0133382088426003!GO:0043492;ATPase activity, coupled to movement of substances;0.013540340185777!GO:0019867;outer membrane;0.0136456089909093!GO:0000819;sister chromatid segregation;0.0138771604013143!GO:0008610;lipid biosynthetic process;0.0138771604013143!GO:0016049;cell growth;0.0139037817511324!GO:0009112;nucleobase metabolic process;0.0140622601480884!GO:0009308;amine metabolic process;0.0141099353424992!GO:0031124;mRNA 3'-end processing;0.01414276458898!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.01414276458898!GO:0015002;heme-copper terminal oxidase activity;0.01414276458898!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.01414276458898!GO:0004129;cytochrome-c oxidase activity;0.01414276458898!GO:0006268;DNA unwinding during replication;0.0145736679687136!GO:0000152;nuclear ubiquitin ligase complex;0.0146212564788252!GO:0046128;purine ribonucleoside metabolic process;0.0146456089903539!GO:0042278;purine nucleoside metabolic process;0.0146456089903539!GO:0007050;cell cycle arrest;0.0147187649603886!GO:0009119;ribonucleoside metabolic process;0.0148780905977486!GO:0006376;mRNA splice site selection;0.0155696421914177!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0155696421914177!GO:0031529;ruffle organization and biogenesis;0.0155930145920768!GO:0000070;mitotic sister chromatid segregation;0.0159333974293492!GO:0016197;endosome transport;0.0165246098234237!GO:0006818;hydrogen transport;0.0166501452318809!GO:0006378;mRNA polyadenylation;0.0167304174327087!GO:0015992;proton transport;0.01680559691395!GO:0000228;nuclear chromosome;0.0171129224945744!GO:0030125;clathrin vesicle coat;0.0172947335734588!GO:0030665;clathrin coated vesicle membrane;0.0172947335734588!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0173602455871876!GO:0030132;clathrin coat of coated pit;0.0176775874657898!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0178794066932062!GO:0051053;negative regulation of DNA metabolic process;0.0178881548221198!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0180046126520821!GO:0008538;proteasome activator activity;0.0183243984725557!GO:0016791;phosphoric monoester hydrolase activity;0.0183243984725557!GO:0006769;nicotinamide metabolic process;0.0183243984725557!GO:0006144;purine base metabolic process;0.0186454228916868!GO:0030133;transport vesicle;0.0192226869271661!GO:0043549;regulation of kinase activity;0.0197515637780388!GO:0016481;negative regulation of transcription;0.020125299581381!GO:0008097;5S rRNA binding;0.020184085431929!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.020268710999096!GO:0050662;coenzyme binding;0.0203187622896515!GO:0008632;apoptotic program;0.0203187622896515!GO:0006497;protein amino acid lipidation;0.0203187622896515!GO:0046426;negative regulation of JAK-STAT cascade;0.0203734379305688!GO:0044437;vacuolar part;0.0204842799931256!GO:0033673;negative regulation of kinase activity;0.0205582674955644!GO:0006469;negative regulation of protein kinase activity;0.0205582674955644!GO:0007034;vacuolar transport;0.0205582674955644!GO:0003711;transcription elongation regulator activity;0.020786283526615!GO:0048518;positive regulation of biological process;0.0207971555434235!GO:0006595;polyamine metabolic process;0.0210826869841671!GO:0043414;biopolymer methylation;0.0211523255585047!GO:0031323;regulation of cellular metabolic process;0.0212240438095321!GO:0006767;water-soluble vitamin metabolic process;0.021286576134843!GO:0051539;4 iron, 4 sulfur cluster binding;0.0212899298862984!GO:0007021;tubulin folding;0.0215174626067621!GO:0007041;lysosomal transport;0.0216604511036407!GO:0043601;nuclear replisome;0.0216734972744872!GO:0030894;replisome;0.0216734972744872!GO:0046365;monosaccharide catabolic process;0.0218502010838979!GO:0008180;signalosome;0.0221516242335902!GO:0005765;lysosomal membrane;0.0225157826652256!GO:0006338;chromatin remodeling;0.0227138258028061!GO:0031625;ubiquitin protein ligase binding;0.0227430582692361!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0229602970367841!GO:0048037;cofactor binding;0.0230649882422974!GO:0005996;monosaccharide metabolic process;0.0231202610245945!GO:0019318;hexose metabolic process;0.0231202610245945!GO:0016408;C-acyltransferase activity;0.0240008941114172!GO:0051348;negative regulation of transferase activity;0.0243062917576361!GO:0004448;isocitrate dehydrogenase activity;0.0249311478790514!GO:0006509;membrane protein ectodomain proteolysis;0.0249684305997654!GO:0033619;membrane protein proteolysis;0.0249684305997654!GO:0018193;peptidyl-amino acid modification;0.0250503191354569!GO:0005669;transcription factor TFIID complex;0.0253980377486217!GO:0005741;mitochondrial outer membrane;0.0256868891682692!GO:0004185;serine carboxypeptidase activity;0.0258138123056257!GO:0004003;ATP-dependent DNA helicase activity;0.0259045119668647!GO:0005869;dynactin complex;0.0261292766210941!GO:0043130;ubiquitin binding;0.0268455056756206!GO:0032182;small conjugating protein binding;0.0268455056756206!GO:0005744;mitochondrial inner membrane presequence translocase complex;0.0268927996622282!GO:0000118;histone deacetylase complex;0.026996246250492!GO:0043189;H4/H2A histone acetyltransferase complex;0.027172008234338!GO:0000792;heterochromatin;0.0280044111329431!GO:0008320;protein transmembrane transporter activity;0.0280939551738667!GO:0005784;translocon complex;0.028455139656886!GO:0022890;inorganic cation transmembrane transporter activity;0.0287995307655302!GO:0022884;macromolecule transmembrane transporter activity;0.0289932907478939!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0289932907478939!GO:0005875;microtubule associated complex;0.029070784710423!GO:0050681;androgen receptor binding;0.0291161664767012!GO:0006506;GPI anchor biosynthetic process;0.029667356180771!GO:0051656;establishment of organelle localization;0.029667356180771!GO:0003756;protein disulfide isomerase activity;0.029667356180771!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.029667356180771!GO:0000339;RNA cap binding;0.0297634089985689!GO:0001558;regulation of cell growth;0.0297634089985689!GO:0042393;histone binding;0.029839678870358!GO:0006270;DNA replication initiation;0.0303386233730648!GO:0032200;telomere organization and biogenesis;0.0306433556240886!GO:0000723;telomere maintenance;0.0306433556240886!GO:0033239;negative regulation of amine metabolic process;0.0308808654935925!GO:0045763;negative regulation of amino acid metabolic process;0.0308808654935925!GO:0001933;negative regulation of protein amino acid phosphorylation;0.0308808654935925!GO:0006360;transcription from RNA polymerase I promoter;0.0315494784660067!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0320757684816081!GO:0019320;hexose catabolic process;0.0320903396372206!GO:0030522;intracellular receptor-mediated signaling pathway;0.0322214545523456!GO:0006350;transcription;0.0326542924286825!GO:0006400;tRNA modification;0.0327171255338098!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0329393886189198!GO:0000303;response to superoxide;0.0330942748733209!GO:0042770;DNA damage response, signal transduction;0.0336352416126401!GO:0030031;cell projection biogenesis;0.0336673196015977!GO:0045792;negative regulation of cell size;0.033913801620888!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.034104708974343!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0349173145559561!GO:0000123;histone acetyltransferase complex;0.035134170319997!GO:0030384;phosphoinositide metabolic process;0.0355974906498399!GO:0005680;anaphase-promoting complex;0.0356330411013911!GO:0005663;DNA replication factor C complex;0.0357720635001393!GO:0000209;protein polyubiquitination;0.0357720635001393!GO:0016485;protein processing;0.0359811694727654!GO:0019783;small conjugating protein-specific protease activity;0.0361970708703029!GO:0031901;early endosome membrane;0.0364630784169918!GO:0004721;phosphoprotein phosphatase activity;0.0364630784169918!GO:0044454;nuclear chromosome part;0.0364630784169918!GO:0043065;positive regulation of apoptosis;0.036685129135789!GO:0006417;regulation of translation;0.0368018696080039!GO:0046966;thyroid hormone receptor binding;0.0379231009687439!GO:0035267;NuA4 histone acetyltransferase complex;0.0381902041230959!GO:0044438;microbody part;0.0382716345728841!GO:0044439;peroxisomal part;0.0382716345728841!GO:0030968;unfolded protein response;0.0383995477596734!GO:0046164;alcohol catabolic process;0.0383995477596734!GO:0004518;nuclease activity;0.0387263707946402!GO:0005758;mitochondrial intermembrane space;0.0393088303147511!GO:0042532;negative regulation of tyrosine phosphorylation of STAT protein;0.0396037124294197!GO:0042518;negative regulation of tyrosine phosphorylation of Stat3 protein;0.0396037124294197!GO:0050732;negative regulation of peptidyl-tyrosine phosphorylation;0.0396037124294197!GO:0008286;insulin receptor signaling pathway;0.0396037124294197!GO:0042158;lipoprotein biosynthetic process;0.0401604664710665!GO:0000096;sulfur amino acid metabolic process;0.0414260716732349!GO:0005938;cell cortex;0.0414831412804699!GO:0006650;glycerophospholipid metabolic process;0.0415152604713493!GO:0006505;GPI anchor metabolic process;0.0415518941903527!GO:0006516;glycoprotein catabolic process;0.0425648761941467!GO:0006066;alcohol metabolic process;0.0425648761941467!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0428627239613593!GO:0045859;regulation of protein kinase activity;0.0428842923434118!GO:0004843;ubiquitin-specific protease activity;0.0429276571051021!GO:0040029;regulation of gene expression, epigenetic;0.0429928272266674!GO:0043550;regulation of lipid kinase activity;0.0430754713995542!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0434384724183016!GO:0007004;telomere maintenance via telomerase;0.0435315326317406!GO:0030308;negative regulation of cell growth;0.0437941182624509!GO:0008156;negative regulation of DNA replication;0.0444989083363266!GO:0031123;RNA 3'-end processing;0.0446886588530611!GO:0004680;casein kinase activity;0.0447063856705616!GO:0005521;lamin binding;0.0449975383426928!GO:0045736;negative regulation of cyclin-dependent protein kinase activity;0.0464877996372031!GO:0008017;microtubule binding;0.0465158327853307!GO:0043068;positive regulation of programmed cell death;0.0466800832658569!GO:0065007;biological regulation;0.0467578362421665!GO:0003923;GPI-anchor transamidase activity;0.047291302211896!GO:0016255;attachment of GPI anchor to protein;0.047291302211896!GO:0042765;GPI-anchor transamidase complex;0.047291302211896!GO:0007030;Golgi organization and biogenesis;0.0475896010773988!GO:0008537;proteasome activator complex;0.048948482217067
|sample_id=10636
|sample_note=
|sample_sex=female
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=endometrium
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|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10636-108I6;search_select_hide=table117:FF:10636-108I6
}}
}}

Latest revision as of 14:32, 3 June 2020

Name:clear cell carcinoma cell line:TEN
Species:Human (Homo sapiens)
Library ID:CNhs11930
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueendometrium
dev stageNA
sexfemale
age74
cell typeunclassifiable
cell lineTEN
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005352
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11930 CAGE DRX007861 DRR008733
Accession ID Hg19

Library idBAMCTSS
CNhs11930 DRZ000158 DRZ001543
Accession ID Hg38

Library idBAMCTSS
CNhs11930 DRZ011508 DRZ012893
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0179
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.517
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0.123
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0.123
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0174
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0336
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.146
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0912
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0889
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.0657
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0.962
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.173
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.00958
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.342
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.123
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.00379
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.416
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11930

Jaspar motifP-value
MA0002.20.165
MA0003.10.621
MA0004.10.7
MA0006.10.71
MA0007.10.396
MA0009.10.825
MA0014.10.0955
MA0017.10.0988
MA0018.20.997
MA0019.10.975
MA0024.10.00104
MA0025.10.295
MA0027.10.872
MA0028.10.0226
MA0029.10.429
MA0030.10.129
MA0031.10.153
MA0035.20.985
MA0038.13.21793e-5
MA0039.20.0136
MA0040.10.77
MA0041.10.697
MA0042.10.224
MA0043.10.0186
MA0046.11.8487e-28
MA0047.20.333
MA0048.10.19
MA0050.10.824
MA0051.10.182
MA0052.10.115
MA0055.16.1916e-4
MA0057.10.657
MA0058.10.705
MA0059.10.303
MA0060.19.87019e-14
MA0061.10.107
MA0062.20.0994
MA0065.20.0331
MA0066.10.341
MA0067.10.426
MA0068.10.729
MA0069.10.0763
MA0070.10.874
MA0071.10.825
MA0072.10.477
MA0073.10.425
MA0074.10.67
MA0076.10.095
MA0077.12.12479e-4
MA0078.10.692
MA0079.20.247
MA0080.23.09976e-4
MA0081.10.0533
MA0083.13.32343e-4
MA0084.10.635
MA0087.10.0726
MA0088.10.248
MA0090.10.00102
MA0091.10.00323
MA0092.10.303
MA0093.10.6
MA0099.20.0254
MA0100.10.038
MA0101.10.0268
MA0102.20.00677
MA0103.17.89547e-8
MA0104.20.23
MA0105.10.209
MA0106.10.51
MA0107.10.0614
MA0108.20.872
MA0111.10.813
MA0112.20.21
MA0113.10.478
MA0114.10.0128
MA0115.10.197
MA0116.10.225
MA0117.10.734
MA0119.10.318
MA0122.10.0468
MA0124.10.628
MA0125.10.37
MA0131.10.855
MA0135.10.00246
MA0136.10.176
MA0137.20.195
MA0138.20.158
MA0139.10.00616
MA0140.10.901
MA0141.10.901
MA0142.10.267
MA0143.10.873
MA0144.10.676
MA0145.10.441
MA0146.10.963
MA0147.10.111
MA0148.10.0426
MA0149.10.0672
MA0150.10.635
MA0152.10.465
MA0153.12.29618e-17
MA0154.10.596
MA0155.10.431
MA0156.10.14
MA0157.10.439
MA0159.10.00286
MA0160.10.265
MA0162.10.455
MA0163.10.526
MA0164.10.368
MA0258.10.57
MA0259.10.439



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11930

Novel motifP-value
10.19
100.141
1000.032
1010.857
1020.932
1030.578
1040.553
1050.98
1060.992
1070.98
1080.577
1090.0935
110.764
1100.169
1110.789
1120.557
1130.195
1140.602
1150.114
1160.649
1170.106
1180.148
1190.646
120.0498
1200.598
1210.95
1220.968
1230.514
1240.251
1250.829
1260.0537
1270.205
1280.0209
1290.168
131.01952e-4
1300.557
1310.17
1320.331
1330.133
1340.064
1350.0918
1360.0477
1370.467
1380.0253
1391.38749e-4
140.833
1400.556
1410.485
1420.911
1430.00201
1440.435
1450.451
1460.499
1470.913
1480.88
1490.302
150.434
1500.517
1510.8
1520.461
1530.998
1540.734
1550.884
1560.518
1570.267
1580.236
1590.338
160.401
1600.56
1610.947
1620.55
1630.917
1640.372
1650.676
1660.825
1670.158
1680.492
1690.583
170.606
180.0464
190.997
20.391
200.0784
210.34
220.892
230.547
240.204
250.551
260.0666
270.436
280.223
290.154
30.65
300.816
310.17
320.0185
330.00893
340.108
350.375
360.0886
370.713
380.838
390.53
40.476
400.0185
410.141
420.968
430.798
440.751
450.947
460.768
470.243
480.781
490.834
50.665
500.809
510.92
520.977
530.973
540.502
550.823
560.991
570.385
580.531
590.937
60.19
600.973
610.22
620.86
630.321
640.867
650.241
660.0105
670.938
681.0466e-5
690.586
70.121
700.312
710.0863
720.61
730.589
740.242
750.178
760.6
770.129
780.691
790.0302
80.688
800.103
810.537
820.034
830.92
840.869
850.0576
860.959
870.0565
880.86
890.798
90.194
900.398
910.0214
920.361
930.598
940.0353
950.163
960.715
970.897
980.665
990.537



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11930


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
193 (reproductive organ cancer)
305 (carcinoma)
120 (female reproductive organ cancer)
299 (adenocarcinoma)
4468 (clear cell adenocarcinoma)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100167 (adenocarcinoma cell line sample)
0102787 (clear cell adenocarcinoma cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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