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(Created page with "{{f5samples |id=FF:11345-117G4 |name=Fibroblast - Cardiac, donor2 |sample_id=11345 |rna_tube_id=117G4 |rna_box=117 |rna_position=G4 |sample_cell_lot=N/A |sample_cell_c...")
 
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{{f5samples
{{f5samples
|id=FF:11345-117G4
|DRA_sample_Accession=CAGE@SAMD00005873
|name=Fibroblast - Cardiac, donor2
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005873
|sample_id=11345
|accession_numbers=CAGE;DRX008244;DRR009116;DRZ000541;DRZ001926;DRZ011891;DRZ013276
|rna_tube_id=117G4
|accession_numbers_RNASeq=sRNA-Seq;DRX037192;DRR041558;DRZ007200
|rna_box=117
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007100,UBERON:0000948,UBERON:0002384,UBERON:0000479,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0010317,UBERON:0004535,UBERON:0001009
|rna_position=G4
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0002494,CL:0000057,CL:0002548
|sample_cell_lot=N/A
|sample_cell_catalog=N/A
|sample_company=Cell Applications
|rna_lot_number=2112.00000
|rna_catalog_number=CA306-R10f
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=21 weeks old fetus
|sample_tissue=heart
|sample_donor(cell lot)=
|sample_sex=female
|sample_age=emrbyo 21week
|sample_ethnicity=U
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=fibroblast
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_weight_ug=10.00000
|rna_concentration=1.00000
|sample_note=
|profile_hcage=CNhs11378,LSID771,release012,resequencing
|profile_cagescan=,,,
|profile_srnaseq=SRhi10012,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000057,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000723,CL:0002320,CL:0002371,CL:0002494,CL:0002548
|ancestors_in_anatomy_facet=UBERON:0000025,UBERON:0000061,UBERON:0000062,UBERON:0000119,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0000948,UBERON:0001009,UBERON:0001048,UBERON:0001062,UBERON:0002050,UBERON:0002384,UBERON:0002532,UBERON:0003081,UBERON:0003084,UBERON:0003914,UBERON:0004120,UBERON:0004140,UBERON:0004141,UBERON:0004291,UBERON:0004535,UBERON:0004872,UBERON:0005291,UBERON:0005423,UBERON:0005498,UBERON:0007005,UBERON:0007100
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000001,FF:0000059
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr8:55370487..55370503,+!p1@SOX17!2.09!121.69!SOX17;;chr21:38071430..38071456,+!p1@SIM2!1.95!87.53!SIM2;;chr20:30433396..30433414,-!p1@FOXS1!1.74!54.44!FOXS1;;chr11:46299199..46299233,+!p1@CREB3L1!1.59!185.74!CREB3L1;;chr7:35293685..35293718,-!p1@TBX20!1.50!30.96!TBX20;;chr17:41739283..41739297,-!p1@MEOX1!1.41!24.55!MEOX1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.35!21.35!ZBED1;;chr11:61520075..61520136,+!p1@C11orf9!1.33!42.70!C11orf9;;chr8:11561684..11561751,+!p1@GATA4!1.33!20.28!GATA4;;chr16:86600426..86600441,+!p1@FOXC2!1.30!45.90!FOXC2;;chr18:53068911..53068935,-!p4@TCF4!1.30!21.35!TCF4;;chr18:19749541..19749557,+!p1@GATA6!1.29!56.58!GATA6;;chr6:134210243..134210257,+!p1@TCF21!1.26!17.08!TCF21;;chr8:72756063..72756125,-!p1@MSC!1.20!29.89!MSC;;chr4:174451370..174451387,-!p1@HAND2!1.17!13.88!HAND2;;chr6:126240380..126240430,+!p2@NCOA7!1.16!35.23!NCOA7;;chr12:80085061..80085119,-!p6@PAWR!1.16!21.35!PAWR;;chr5:72744594..72744609,-!p1@FOXD1!1.12!55.51!FOXD1;;chr12:124873852..124873881,-!p3@NCOR2!1.10!69.39!NCOR2;;chr11:46299539..46299620,+!p2@CREB3L1!1.09!19.21!CREB3L1;;chr18:19749386..19749404,+!p2@GATA6!1.08!16.01!GATA6;;chr1:37940170..37940190,+!p1@ZC3H12A!1.07!132.37!ZC3H12A;;chr15:67418119..67418162,+!p5@SMAD3!1.06!11.74!SMAD3;;chr7:1577899..1577943,+!p3@MAFK!1.03!9.61!MAFK;;chr21:38071462..38071474,+!p3@SIM2!1.03!9.61!SIM2;;chr17:1959369..1959388,+!p2@HIC1!1.02!25.62!HIC1;;chr12:124873357..124873401,-!p1@NCOR2!0.99!104.61!NCOR2;;chr21:38071403..38071428,+!p2@SIM2!0.98!8.54!SIM2;;chr8:106330656..106330684,+!p1@ZFPM2!0.97!22.42!ZFPM2;;chr6:126070769..126070801,+!p1@HEY2!0.97!9.61!HEY2;;chr8:72756637..72756664,-!p3@MSC!0.97!9.61!MSC;;chr10:8096772..8096787,+!p2@GATA3!0.96!9.61!GATA3;;chr8:72756267..72756296,-!p4@MSC!0.95!11.74!MSC;;chr1:151032860..151032918,+!p1@MLLT11!0.93!91.80!MLLT11;;chr1:151032922..151032951,+!p2@MLLT11!0.93!12.81!MLLT11;;chr3:25469815..25469866,+!p3@RARB!0.93!7.47!RARB;;chr4:174450089..174450153,-!p2@HAND2!0.93!7.47!HAND2;;chr17:1958388..1958404,+!p1@HIC1!0.92!48.04!HIC1;;chr2:239756739..239756755,+!p2@TWIST2!0.92!12.81!TWIST2;;chr6:19837592..19837621,+!p1@ID4!0.91!45.90!ID4;;chr9:35732647..35732678,+!p2@CREB3!0.91!41.63!CREB3;;chr6:85474299..85474324,-!p1@TBX18!0.90!12.81!TBX18;;chr5:72744445..72744466,-!p2@FOXD1!0.90!11.74!FOXD1;;chr7:44143978..44143989,+!p2@AEBP1!0.89!12.81!AEBP1;;chr7:44143925..44143970,+!p1@AEBP1!0.88!156.92!AEBP1;;chr6:126240442..126240459,+!p4@NCOA7!0.88!8.54!NCOA7;;chr3:170076314..170076334,+!p2@SKIL!0.87!8.54!SKIL;;chr11:125034640..125034655,+!p1@PKNOX2!0.87!6.40!PKNOX2;;chr17:6926362..6926377,+!p1@BCL6B!0.87!6.40!BCL6B;;chr12:66218255..66218304,+!p3@HMGA2!0.85!17.08!HMGA2;;chr2:74229812..74229867,+!p1@TET3!0.85!16.01!TET3;;chr6:10415276..10415341,-!p2@TFAP2A!0.85!7.47!TFAP2A;;chr2:239756671..239756732,+!p1@TWIST2!0.84!20.28!TWIST2;;chr17:3571863..3571881,-!p1@TAX1BP3!0.83!439.81!TAX1BP3;;chr3:52001448..52001478,-!p2@PCBP4!0.82!83.26!PCBP4;;chr12:66218598..66218645,+!p2@HMGA2!0.82!27.75!HMGA2;;chr20:50179368..50179392,-!p2@NFATC2!0.82!7.47!NFATC2;;chr1:8938709..8938720,-!p3@ENO1!0.80!277.55!ENO1;;chr19:49864746..49864780,-!p2@TEAD2!0.80!7.47!TEAD2;;chr11:46333934..46333963,+!p5@CREB3L1!0.80!5.34!CREB3L1;;chr12:80085120..80085156,-!p14@PAWR!0.80!5.34!PAWR;;chr3:25470156..25470227,+!p2@RARB!0.80!5.34!RARB;;chr16:86600458..86600461,+!p3@FOXC2!0.80!5.34!FOXC2;;chr19:13213399..13213414,-!p6@LYL1!0.80!5.34!LYL1;;chr2:46524537..46524553,+!p1@EPAS1!0.79!555.09!EPAS1;;chr3:128206762..128206781,-!p2@GATA2!0.79!35.23!GATA2;;chr1:935467..935484,-!p1@HES4!0.79!24.55!HES4;;chr18:19749517..19749531,+!p3@GATA6!0.79!9.61!GATA6;;chr1:151032782..151032801,+!p4@MLLT11!0.78!10.67!MLLT11;;chr3:25469724..25469773,+!p1@RARB!0.78!7.47!RARB;;chr5:72744562..72744573,-!p3@FOXD1!0.78!6.40!FOXD1;;chr3:141087393..141087426,+!p3@ZBTB38!0.77!21.35!ZBTB38;;chr6:10412600..10412637,-!p1@TFAP2A!0.77!8.54!TFAP2A;;chr19:13213511..13213545,-!p2@LYL1!0.77!5.34!LYL1;;chr12:26277817..26277863,-!p2@BHLHE41!0.75!6.40!BHLHE41;;chr15:83953397..83953425,-!p1@BNC1!0.75!5.34!BNC1;;chr1:170633262..170633285,+!p3@PRRX1!0.75!5.34!PRRX1;;chr2:121493425..121493474,+!p1@GLI2!0.74!10.67!GLI2;;chr20:50721803..50721857,-!p2@ZFP64!0.74!7.47!ZFP64;;chr8:72756667..72756736,-!p2@MSC!0.74!7.47!MSC;;chr12:96588368..96588394,+!p3@ELK3!0.73!12.81!ELK3;;chr12:125002827..125002855,-!p5@NCOR2!0.73!6.40!NCOR2;;chr10:131762504..131762555,-!p1@EBF3!0.72!4.27!EBF3;;chr11:125034605..125034636,+!p2@PKNOX2!0.72!4.27!PKNOX2;;chr16:67881647..67881663,-!p3@CENPT!0.72!4.27!CENPT;;chr16:86601088..86601105,+!p5@FOXC2!0.72!4.27!FOXC2;;chr1:170633058..170633084,+!p5@PRRX1!0.72!4.27!PRRX1;;chr1:40105299..40105326,-!p1@HEYL!0.72!4.27!HEYL;;chr20:30433431..30433442,-!p2@FOXS1!0.72!4.27!FOXS1;;chr21:39870339..39870443,-!p1@ERG!0.72!4.27!ERG;;chr12:66218836..66218888,+!p1@HMGA2!0.71!43.77!HMGA2;;chr17:38498594..38498661,+!p2@RARA!0.70!14.94!RARA;;chr17:41622925..41622976,-!p3@ETV4!0.70!6.40!ETV4;;chr1:23885981..23886002,-!p1@ID3!0.68!757.92!ID3;;chr3:71630980..71631110,-!p3@FOXP1!0.68!14.94!FOXP1;;chr2:71127699..71127744,+!p1@VAX2!0.68!8.54!VAX2;;chr8:128747757..128747800,+!p7@MYC!0.68!5.34!MYC;;chr11:46299186..46299195,+!p3@CREB3L1!0.68!4.27!CREB3L1;;chr12:80084167..80084197,-!p5@PAWR!0.67!9.61!PAWR;;chr3:185826286..185826318,-!p5@ETV5!0.67!4.27!ETV5;;chr6:126240463..126240489,+!p6@NCOA7!0.67!4.27!NCOA7;;chr1:170632285..170632309,+!p1@PRRX1!0.67!4.27!PRRX1;;chr1:23886132..23886156,-!p2@ID3!0.67!4.27!ID3;;chr8:77593474..77593612,+!p1@ZFHX4!0.66!17.08!ZFHX4;;chr8:145159846..145159889,+!p6@MAF1!0.66!5.34!MAF1;;chr5:72743793..72743855,-!p4@FOXD1!0.66!4.27!FOXD1;;chr20:42295745..42295765,+!p1@MYBL2!0.65!66.18!MYBL2;;chr16:29819446..29819471,+!p9@MAZ!0.65!11.74!MAZ;;chr2:101436564..101436647,+!p1@NPAS2!0.64!80.06!NPAS2;;chr3:52001426..52001447,-!p3@PCBP4!0.64!10.67!PCBP4;;chr12:125002861..125002894,-!p7@NCOR2!0.64!5.34!NCOR2;;chr7:137686552..137686564,-!p9@CREB3L2!0.64!5.34!CREB3L2;;chr6:126240356..126240379,+!p7@NCOA7!0.64!4.27!NCOA7;;chr11:120107344..120107351,+!p1@POU2F3!0.64!4.27!POU2F3;;chr19:45908292..45908374,-!p1@PPP1R13L!0.62!33.09!PPP1R13L;;chr3:168865194..168865245,-!p3@MECOM!0.62!4.27!MECOM;;chr4:146403912..146403972,+!p5@SMAD1!0.62!4.27!SMAD1;;chr8:72756213..72756243,-!p5@MSC!0.62!4.27!MSC;;chr8:55370720..55370733,+!p2@SOX17!0.62!3.20!SOX17;;chr8:72755987..72756002,-!p7@MSC!0.62!3.20!MSC;;chr8:72756380..72756427,-!p8@MSC!0.62!3.20!MSC;;chr1:201979743..201979762,+!p1@ELF3!0.62!3.20!ELF3;;chr21:38071488..38071502,+!p4@SIM2!0.62!3.20!SIM2;;chr9:16705069..16705086,-!p3@BNC2!0.62!3.20!BNC2;;chr11:128563652..128563689,+!p3@FLI1!0.62!3.20!FLI1;;chr15:66994718..66994729,+!p4@SMAD6!0.62!3.20!SMAD6;;chr16:86600870..86600921,+!p2@FOXC2!0.62!3.20!FOXC2;;chr16:86601052..86601066,+!p4@FOXC2!0.62!3.20!FOXC2;;chr17:46132044..46132080,+!p4@NFE2L1!0.62!3.20!NFE2L1;;chr1:8938736..8938756,-!p1@ENO1!0.61!4063.93!ENO1;;chr20:48599506..48599526,+!p1@SNAI1!0.61!23.48!SNAI1;;chr1:8934931..8934947,-!p4@ENO1!0.61!11.74!ENO1;;chr9:4299959..4299974,-!p4@GLIS3!0.61!5.34!GLIS3;;chr2:208030647..208030689,-!p1@KLF7!0.60!29.89!KLF7;;chr20:42543441..42543497,+!p1@TOX2!0.60!16.01!TOX2;;chr7:19157248..19157268,-!p1@TWIST1!0.60!9.61!TWIST1;;chr3:168864315..168864339,-!p2@MECOM!0.60!5.34!MECOM;;chr11:67007611..67007622,+!p6@KDM2A!0.60!4.27!KDM2A;;chr3:12329320..12329338,+!p4@PPARG!0.60!3.20!PPARG;;chr17:3571887..3571918,-!p2@TAX1BP3!0.59!39.50!TAX1BP3;;chr10:104155480..104155534,+!p2@NFKB2!0.59!22.42!NFKB2;;chr11:65430554..65430579,-!p3@RELA!0.59!8.54!RELA;;chr1:170632959..170632987,+!p4@PRRX1!0.59!3.20!PRRX1;;chr7:150076370..150076396,+!p2@ZNF775!0.58!5.34!ZNF775;;chr6:41514078..41514158,+!p1@FOXP4!0.57!29.89!FOXP4;;chr11:128392273..128392308,-!p2@ETS1!0.57!13.88!ETS1;;chr17:41623692..41623715,-!p1@ETV4!0.57!13.88!ETV4;;chr2:46524878..46524891,+!p3@EPAS1!0.57!5.34!EPAS1;;chr22:39917189..39917207,+!p5@ATF4!0.57!3.20!ATF4;;chr18:77155922..77155939,+!p1@NFATC1!0.56!8.54!NFATC1;;chr3:52001396..52001425,-!p4@PCBP4!0.56!5.34!PCBP4;;chr19:13134772..13134822,+!p2@NFIX!0.56!4.27!NFIX;;chr19:13213662..13213686,-!p1@LYL1!0.56!4.27!LYL1;;chr6:34204921..34204939,+!p3@HMGA1!0.55!97.14!HMGA1;;chr2:27357446..27357475,-!p2@PREB!0.55!10.67!PREB;;chr1:935496..935509,-!p3@HES4!0.55!4.27!HES4;;chr3:141087339..141087387,+!p2@ZBTB38!0.54!32.02!ZBTB38;;chr12:66218378..66218401,+!p6@HMGA2!0.54!4.27!HMGA2;;chr16:86544113..86544145,+!p1@FOXF1!0.54!3.20!FOXF1;;chr17:38498402..38498445,+!p3@RARA!0.53!10.67!RARA;;chr6:126102292..126102329,+!p3@NCOA7!0.53!9.61!NCOA7;;chr15:67358269..67358272,+!p15@SMAD3!0.53!3.20!SMAD3;;chr19:38720294..38720348,-!p1@DPF1!0.53!3.20!DPF1;;chr1:151032739..151032748,+!p6@MLLT11!0.53!3.20!MLLT11;;chr10:104155659..104155676,+!p4@NFKB2!0.53!3.20!NFKB2;;chr12:80083807..80083859,-!p11@PAWR!0.53!3.20!PAWR;;chr19:42759266..42759290,-!p1@ERF!0.52!95.01!ERF;;chr16:29819403..29819442,+!p5@MAZ!0.52!24.55!MAZ;;chr10:104154246..104154347,+!p3@NFKB2!0.52!18.15!NFKB2;;chr3:39195037..39195069,-!p2@CSRNP1!0.52!18.15!CSRNP1;;chr12:57504975..57505019,-!p2@STAT6!0.52!11.74!STAT6;;chr17:46621937..46621966,-!p2@HOXB2!0.52!7.47!HOXB2;;chr14:24837368..24837401,+!p1@NFATC4!0.52!6.40!NFATC4;;chr10:48355030..48355090,+!p1@ZNF488!0.52!3.20!ZNF488;;chr7:44143997..44144008,+!p3@AEBP1!0.52!3.20!AEBP1;;chr22:29196030..29196075,-!p5@XBP1!0.52!3.20!XBP1;;chr20:42295713..42295738,+!p2@MYBL2!0.51!17.08!MYBL2;;chr19:46272462..46272562,-!p1@SIX5!0.51!11.74!SIX5;;chr15:66994561..66994597,+!p2@SMAD6!0.51!6.40!SMAD6;;chr17:79885633..79885645,-!p4@MAFG!0.51!4.27!MAFG;;chr1:205649614..205649663,-!p1@SLC45A3,p5@ELK4!0.51!4.27!ELK4;;chr2:121493492..121493537,+!p2@GLI2!0.51!4.27!GLI2;;chr3:71630690..71630750,-!p11@FOXP1!0.51!4.27!FOXP1;;chr12:80084279..80084293,-!p8@PAWR!0.51!4.27!PAWR;;chr17:59477275..59477286,+!p3@TBX2!0.51!3.20!TBX2;;chr20:62680984..62680999,-!p1@SOX18!0.51!3.20!SOX18;;chr6:43139126..43139137,+!p6@SRF!0.51!3.20!SRF;;chr17:7590797..7590815,-!p1@TP53!0.50!124.90!TP53;;chr1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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002494;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002548;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000948;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007100
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 67: Line 43:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Cardiac%252c%2520donor2.CNhs11378.11345-117G4.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Cardiac%252c%2520donor2.CNhs11378.11345-117G4.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Cardiac%252c%2520donor2.CNhs11378.11345-117G4.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Cardiac%252c%2520donor2.CNhs11378.11345-117G4.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Cardiac%252c%2520donor2.CNhs11378.11345-117G4.hg38.nobarcode.ctss.bed.gz
|id=FF:11345-117G4
|is_a=EFO:0002091;;FF:0000059
|is_obsolete=
|library_id=CNhs11378
|library_id_phase_based=2:CNhs11378
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11345
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10012.AGTCAA.11345
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11345
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10012.AGTCAA.11345
|name=Fibroblast - Cardiac, donor2
|namespace=
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs11378,LSID771,release012,COMPLETED
|profile_rnaseq=
|profile_srnaseq=SRhi10012,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=117
|rna_catalog_number=CA306-R10f
|rna_concentration=1
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_lot_number=2112
|rna_od260/230=
|rna_od260/280=
|rna_position=G4
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=117G4
|rna_weight_ug=10
|rnaseq_library_id=SRhi10012.AGTCAA
|sample_age=emrbyo 21week
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=N/A
|sample_cell_type=fibroblast
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Cell Applications
|sample_description=
|sample_dev_stage=21 weeks old fetus
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=U
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.013858424696e-206!GO:0005737;cytoplasm;7.5103225547949e-189!GO:0043226;organelle;8.20783041563034e-158!GO:0043229;intracellular organelle;1.18875807377572e-157!GO:0043231;intracellular membrane-bound organelle;4.04371342025956e-153!GO:0043227;membrane-bound organelle;1.06343873620481e-152!GO:0044444;cytoplasmic part;4.8505246433055e-131!GO:0044422;organelle part;8.46912883936524e-126!GO:0044446;intracellular organelle part;1.57134421335957e-124!GO:0032991;macromolecular complex;1.86225881381861e-86!GO:0005515;protein binding;2.77174251524433e-86!GO:0044238;primary metabolic process;1.95284331785834e-73!GO:0030529;ribonucleoprotein complex;1.08452454569904e-72!GO:0044237;cellular metabolic process;4.83327589446117e-72!GO:0043170;macromolecule metabolic process;2.8961030578707e-64!GO:0043233;organelle lumen;3.94628313662948e-62!GO:0031974;membrane-enclosed lumen;3.94628313662948e-62!GO:0005739;mitochondrion;1.80182767654127e-61!GO:0003723;RNA binding;1.18502617288671e-54!GO:0044428;nuclear part;7.77009126628256e-54!GO:0031090;organelle membrane;1.8393595801821e-50!GO:0019538;protein metabolic process;1.74424817940657e-49!GO:0016043;cellular component organization and biogenesis;3.91031501155243e-49!GO:0005634;nucleus;4.7281731434134e-49!GO:0006412;translation;1.09623411783116e-47!GO:0005840;ribosome;2.1617198875795e-45!GO:0009058;biosynthetic process;7.28660671322548e-45!GO:0043234;protein complex;1.88533895190487e-44!GO:0044260;cellular macromolecule metabolic process;7.63584482428154e-44!GO:0044267;cellular protein metabolic process;3.38487633350295e-43!GO:0044429;mitochondrial part;2.31940775765604e-42!GO:0044249;cellular biosynthetic process;4.2084919061353e-42!GO:0003735;structural constituent of ribosome;4.82578407895702e-41!GO:0015031;protein transport;1.38287368733149e-39!GO:0006396;RNA processing;3.19505183239434e-39!GO:0009059;macromolecule biosynthetic process;3.37217006538578e-39!GO:0033036;macromolecule localization;6.69910149056667e-39!GO:0005829;cytosol;7.11753305844613e-38!GO:0031967;organelle envelope;6.50456429112386e-37!GO:0031975;envelope;1.4246093851299e-36!GO:0008104;protein localization;1.68589767006253e-36!GO:0045184;establishment of protein localization;3.25967032017191e-36!GO:0033279;ribosomal subunit;1.32287537847464e-35!GO:0031981;nuclear lumen;8.07902520179049e-35!GO:0046907;intracellular transport;7.39948640875817e-33!GO:0006996;organelle organization and biogenesis;8.59872634423549e-32!GO:0043283;biopolymer metabolic process;8.77997479670128e-31!GO:0043228;non-membrane-bound organelle;1.45131851079671e-29!GO:0043232;intracellular non-membrane-bound organelle;1.45131851079671e-29!GO:0065003;macromolecular complex assembly;2.35716868809617e-29!GO:0016071;mRNA metabolic process;3.51796635847347e-29!GO:0005740;mitochondrial envelope;1.18673978277e-28!GO:0006886;intracellular protein transport;1.7385539375794e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.44798830047987e-27!GO:0031966;mitochondrial membrane;6.21345109054635e-27!GO:0010467;gene expression;1.18825664604009e-26!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.18825664604009e-26!GO:0008380;RNA splicing;5.32809134201664e-26!GO:0022607;cellular component assembly;1.2118213211978e-25!GO:0019866;organelle inner membrane;2.1321529246712e-25!GO:0006397;mRNA processing;2.23740059247326e-25!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.08301184755682e-24!GO:0005743;mitochondrial inner membrane;4.62741573511913e-24!GO:0000166;nucleotide binding;4.4939438113937e-22!GO:0044445;cytosolic part;9.36769501766158e-22!GO:0005783;endoplasmic reticulum;3.90049100440031e-21!GO:0012505;endomembrane system;5.91615394132964e-21!GO:0017111;nucleoside-triphosphatase activity;2.61500552318887e-20!GO:0006119;oxidative phosphorylation;3.03717853460805e-20!GO:0005654;nucleoplasm;3.04286117663643e-20!GO:0044455;mitochondrial membrane part;3.31303441617983e-20!GO:0016462;pyrophosphatase activity;3.39857423115403e-20!GO:0006259;DNA metabolic process;3.39936635691998e-20!GO:0051641;cellular localization;3.53090443106563e-20!GO:0051649;establishment of cellular localization;3.56807820690038e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;6.94286853000858e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;8.10044056421738e-20!GO:0005681;spliceosome;4.30894069991814e-19!GO:0015934;large ribosomal subunit;5.06466499793251e-19!GO:0044432;endoplasmic reticulum part;3.72867305996866e-18!GO:0006457;protein folding;7.81567996362805e-18!GO:0015935;small ribosomal subunit;1.46477364837311e-17!GO:0032553;ribonucleotide binding;2.50251362332769e-17!GO:0032555;purine ribonucleotide binding;2.50251362332769e-17!GO:0031980;mitochondrial lumen;3.20371804054376e-17!GO:0005759;mitochondrial matrix;3.20371804054376e-17!GO:0017076;purine nucleotide binding;4.91865392626428e-17!GO:0044451;nucleoplasm part;6.40920792919958e-17!GO:0008134;transcription factor binding;1.90360505719933e-16!GO:0007049;cell cycle;2.3921814395686e-16!GO:0048770;pigment granule;2.6990999733834e-16!GO:0042470;melanosome;2.6990999733834e-16!GO:0005794;Golgi apparatus;5.98960835729984e-16!GO:0016874;ligase activity;7.30595480221864e-16!GO:0005730;nucleolus;1.20296291113611e-15!GO:0005746;mitochondrial respiratory chain;2.04299479991484e-15!GO:0006605;protein targeting;3.16632458098961e-15!GO:0022618;protein-RNA complex assembly;4.95244350483971e-15!GO:0051186;cofactor metabolic process;7.38580139621183e-15!GO:0000502;proteasome complex (sensu Eukaryota);1.26553442307051e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.3665632353697e-14!GO:0005524;ATP binding;5.3665632353697e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;6.48621377452581e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);9.49904485510168e-14!GO:0032559;adenyl ribonucleotide binding;9.80761927290157e-14!GO:0044265;cellular macromolecule catabolic process;1.27496924333396e-13!GO:0008135;translation factor activity, nucleic acid binding;1.28244268211332e-13!GO:0051082;unfolded protein binding;1.55196806549323e-13!GO:0016192;vesicle-mediated transport;2.09553630770377e-13!GO:0050136;NADH dehydrogenase (quinone) activity;2.23035273188215e-13!GO:0003954;NADH dehydrogenase activity;2.23035273188215e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.23035273188215e-13!GO:0030554;adenyl nucleotide binding;2.54617568918494e-13!GO:0009057;macromolecule catabolic process;3.57645718297772e-13!GO:0022402;cell cycle process;3.73854491733044e-13!GO:0043285;biopolymer catabolic process;4.86897686869958e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.2445837116724e-13!GO:0043412;biopolymer modification;5.77921782906718e-13!GO:0006512;ubiquitin cycle;6.72131840503795e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.15264126821759e-12!GO:0048193;Golgi vesicle transport;1.25360381704005e-12!GO:0005789;endoplasmic reticulum membrane;2.18210926171605e-12!GO:0044248;cellular catabolic process;4.49137356361644e-12!GO:0042254;ribosome biogenesis and assembly;5.36114135407259e-12!GO:0006464;protein modification process;6.85709207938597e-12!GO:0012501;programmed cell death;9.28410270334849e-12!GO:0000278;mitotic cell cycle;1.0307541419012e-11!GO:0005761;mitochondrial ribosome;1.04057184066187e-11!GO:0000313;organellar ribosome;1.04057184066187e-11!GO:0030964;NADH dehydrogenase complex (quinone);1.13405906104201e-11!GO:0045271;respiratory chain complex I;1.13405906104201e-11!GO:0005747;mitochondrial respiratory chain complex I;1.13405906104201e-11!GO:0042775;organelle ATP synthesis coupled electron transport;1.22509970159356e-11!GO:0042773;ATP synthesis coupled electron transport;1.22509970159356e-11!GO:0051603;proteolysis involved in cellular protein catabolic process;1.33728191417605e-11!GO:0006915;apoptosis;1.44539973494413e-11!GO:0006732;coenzyme metabolic process;1.59573241119719e-11!GO:0019941;modification-dependent protein catabolic process;1.71346287590589e-11!GO:0043632;modification-dependent macromolecule catabolic process;1.71346287590589e-11!GO:0044257;cellular protein catabolic process;2.31413414979423e-11!GO:0048523;negative regulation of cellular process;2.80276553999786e-11!GO:0006511;ubiquitin-dependent protein catabolic process;3.00533741161219e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.65091774637514e-11!GO:0003712;transcription cofactor activity;4.05820170933847e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;4.91938037502426e-11!GO:0000375;RNA splicing, via transesterification reactions;4.91938037502426e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.91938037502426e-11!GO:0003743;translation initiation factor activity;7.03107238699945e-11!GO:0030163;protein catabolic process;8.08775410493142e-11!GO:0006913;nucleocytoplasmic transport;8.74561615115834e-11!GO:0016887;ATPase activity;8.7671386324456e-11!GO:0009055;electron carrier activity;9.12366056907685e-11!GO:0009259;ribonucleotide metabolic process;1.41966378716614e-10!GO:0042623;ATPase activity, coupled;1.77646448914952e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;2.10677644091186e-10!GO:0051169;nuclear transport;2.21944007681177e-10!GO:0005793;ER-Golgi intermediate compartment;2.49665297366195e-10!GO:0008219;cell death;2.56359561354374e-10!GO:0016265;death;2.56359561354374e-10!GO:0003676;nucleic acid binding;4.5472647779503e-10!GO:0008565;protein transporter activity;4.81597244444967e-10!GO:0043687;post-translational protein modification;6.63954450989886e-10!GO:0006163;purine nucleotide metabolic process;6.64716743751155e-10!GO:0006323;DNA packaging;7.72910100991517e-10!GO:0009150;purine ribonucleotide metabolic process;8.94940319821681e-10!GO:0051276;chromosome organization and biogenesis;1.18500478214092e-09!GO:0006399;tRNA metabolic process;1.60025340957935e-09!GO:0048519;negative regulation of biological process;1.86889649677492e-09!GO:0005635;nuclear envelope;2.21874906544393e-09!GO:0006413;translational initiation;2.29322466661707e-09!GO:0009260;ribonucleotide biosynthetic process;3.05620639937635e-09!GO:0017038;protein import;3.34924524661729e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.67847547640722e-09!GO:0006366;transcription from RNA polymerase II promoter;4.02904439201345e-09!GO:0044453;nuclear membrane part;4.31778044132955e-09!GO:0006446;regulation of translational initiation;4.42043765680203e-09!GO:0006164;purine nucleotide biosynthetic process;4.51402904587191e-09!GO:0009152;purine ribonucleotide biosynthetic process;5.92487668553032e-09!GO:0031965;nuclear membrane;6.13515573780433e-09!GO:0065004;protein-DNA complex assembly;6.15117468355165e-09!GO:0051726;regulation of cell cycle;7.14129632574982e-09!GO:0006333;chromatin assembly or disassembly;1.02539030492691e-08!GO:0051246;regulation of protein metabolic process;1.05545047784721e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.19495714509466e-08!GO:0000074;regulation of progression through cell cycle;1.3204337777987e-08!GO:0009199;ribonucleoside triphosphate metabolic process;1.3204337777987e-08!GO:0065002;intracellular protein transport across a membrane;1.39377128731312e-08!GO:0009141;nucleoside triphosphate metabolic process;2.11066413975127e-08!GO:0005788;endoplasmic reticulum lumen;2.34435479751129e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.85242040499201e-08!GO:0006461;protein complex assembly;2.91127760108444e-08!GO:0016070;RNA metabolic process;2.91838254914302e-08!GO:0003924;GTPase activity;3.00722603051044e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.09705183359101e-08!GO:0004812;aminoacyl-tRNA ligase activity;3.09705183359101e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.09705183359101e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.14347272791881e-08!GO:0009144;purine nucleoside triphosphate metabolic process;3.14347272791881e-08!GO:0006974;response to DNA damage stimulus;3.20587943670098e-08!GO:0008639;small protein conjugating enzyme activity;3.21627215029967e-08!GO:0019787;small conjugating protein ligase activity;3.30278601676423e-08!GO:0006334;nucleosome assembly;3.35339994574034e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.63586238265462e-08!GO:0006364;rRNA processing;3.91123675213753e-08!GO:0009142;nucleoside triphosphate biosynthetic process;4.86899943555982e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.86899943555982e-08!GO:0004842;ubiquitin-protein ligase activity;5.20763364198584e-08!GO:0006888;ER to Golgi vesicle-mediated transport;5.51240401857016e-08!GO:0030120;vesicle coat;5.70774902914111e-08!GO:0030662;coated vesicle membrane;5.70774902914111e-08!GO:0015986;ATP synthesis coupled proton transport;5.83134163336601e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.83134163336601e-08!GO:0016604;nuclear body;5.9342281733403e-08!GO:0005694;chromosome;6.0495687245594e-08!GO:0016072;rRNA metabolic process;6.47357148240847e-08!GO:0000785;chromatin;6.82789363277103e-08!GO:0043038;amino acid activation;6.82789363277103e-08!GO:0006418;tRNA aminoacylation for protein translation;6.82789363277103e-08!GO:0043039;tRNA aminoacylation;6.82789363277103e-08!GO:0005643;nuclear pore;7.98291950898923e-08!GO:0044427;chromosomal part;8.65821627130121e-08!GO:0051188;cofactor biosynthetic process;8.98639384913321e-08!GO:0043067;regulation of programmed cell death;9.11211665890661e-08!GO:0016491;oxidoreductase activity;9.38108097232272e-08!GO:0016740;transferase activity;1.07760587541148e-07!GO:0042981;regulation of apoptosis;1.11730087147544e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.15643756592973e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.15643756592973e-07!GO:0008026;ATP-dependent helicase activity;1.16569150899636e-07!GO:0031497;chromatin assembly;1.21695432541791e-07!GO:0019829;cation-transporting ATPase activity;1.29767832486286e-07!GO:0022403;cell cycle phase;1.42038839770608e-07!GO:0031252;leading edge;1.91442750199799e-07!GO:0046034;ATP metabolic process;1.99569676505783e-07!GO:0016881;acid-amino acid ligase activity;2.05425453510252e-07!GO:0009060;aerobic respiration;2.25873539482848e-07!GO:0009056;catabolic process;2.50831909865857e-07!GO:0048475;coated membrane;2.51424741870537e-07!GO:0030117;membrane coat;2.51424741870537e-07!GO:0004386;helicase activity;2.5326945591788e-07!GO:0044431;Golgi apparatus part;2.90983559504155e-07!GO:0006260;DNA replication;3.14130647295663e-07!GO:0007005;mitochondrion organization and biogenesis;3.23781224315832e-07!GO:0030532;small nuclear ribonucleoprotein complex;3.34257194070463e-07!GO:0000087;M phase of mitotic cell cycle;3.52383592232427e-07!GO:0007067;mitosis;3.58963976290605e-07!GO:0046930;pore complex;4.12435597168582e-07!GO:0003714;transcription corepressor activity;4.98561475989824e-07!GO:0043069;negative regulation of programmed cell death;5.02787628777123e-07!GO:0015078;hydrogen ion transmembrane transporter activity;5.17637333854281e-07!GO:0045333;cellular respiration;5.4010939302159e-07!GO:0009117;nucleotide metabolic process;5.46349277449692e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;6.19055638386032e-07!GO:0006754;ATP biosynthetic process;6.50356326475062e-07!GO:0006753;nucleoside phosphate metabolic process;6.50356326475062e-07!GO:0005768;endosome;8.22290285886463e-07!GO:0030036;actin cytoskeleton organization and biogenesis;1.19435117944958e-06!GO:0048522;positive regulation of cellular process;1.2229207895394e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.25118626788353e-06!GO:0009719;response to endogenous stimulus;1.31353000091276e-06!GO:0043066;negative regulation of apoptosis;1.32063234059735e-06!GO:0006281;DNA repair;1.41994229628765e-06!GO:0006793;phosphorus metabolic process;1.57119028939272e-06!GO:0006796;phosphate metabolic process;1.57119028939272e-06!GO:0016564;transcription repressor activity;1.80578481091282e-06!GO:0051170;nuclear import;1.88859573765069e-06!GO:0016023;cytoplasmic membrane-bound vesicle;1.98870860684377e-06!GO:0016310;phosphorylation;2.1233775625921e-06!GO:0006606;protein import into nucleus;2.22318563410834e-06!GO:0045786;negative regulation of progression through cell cycle;2.55961597138828e-06!GO:0016607;nuclear speck;2.91318525895371e-06!GO:0031988;membrane-bound vesicle;3.23100213275364e-06!GO:0016469;proton-transporting two-sector ATPase complex;3.43142647351496e-06!GO:0005839;proteasome core complex (sensu Eukaryota);3.5606231942064e-06!GO:0051301;cell division;3.7339231092914e-06!GO:0005525;GTP binding;3.9835533363922e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;4.86781502842282e-06!GO:0045259;proton-transporting ATP synthase complex;5.23465572386839e-06!GO:0006403;RNA localization;5.24298275244161e-06!GO:0051187;cofactor catabolic process;5.57827601737537e-06!GO:0006916;anti-apoptosis;5.66086057730929e-06!GO:0050657;nucleic acid transport;5.80445908049214e-06!GO:0051236;establishment of RNA localization;5.80445908049214e-06!GO:0050658;RNA transport;5.80445908049214e-06!GO:0016563;transcription activator activity;5.93369077005189e-06!GO:0016853;isomerase activity;6.24668388843782e-06!GO:0006752;group transfer coenzyme metabolic process;7.19568184986854e-06!GO:0005667;transcription factor complex;7.19568184986854e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;8.42780104448648e-06!GO:0009108;coenzyme biosynthetic process;8.42801332073124e-06!GO:0006099;tricarboxylic acid cycle;9.04644870118444e-06!GO:0046356;acetyl-CoA catabolic process;9.04644870118444e-06!GO:0030029;actin filament-based process;9.60255429123162e-06!GO:0031324;negative regulation of cellular metabolic process;1.06169052114465e-05!GO:0045454;cell redox homeostasis;1.19122805996774e-05!GO:0006091;generation of precursor metabolites and energy;1.39665936471433e-05!GO:0016567;protein ubiquitination;1.47043252070334e-05!GO:0006084;acetyl-CoA metabolic process;1.51073901358324e-05!GO:0016568;chromatin modification;1.64384739701479e-05!GO:0009109;coenzyme catabolic process;1.67420941532016e-05!GO:0015630;microtubule cytoskeleton;1.86032112325594e-05!GO:0004298;threonine endopeptidase activity;1.89173046972571e-05!GO:0005798;Golgi-associated vesicle;1.98929200831499e-05!GO:0003697;single-stranded DNA binding;2.01950945534825e-05!GO:0000139;Golgi membrane;2.2995940911245e-05!GO:0032446;protein modification by small protein conjugation;2.31411910421295e-05!GO:0050794;regulation of cellular process;2.43467664009539e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.70649036278611e-05!GO:0003713;transcription coactivator activity;2.84535689959311e-05!GO:0000786;nucleosome;2.90060597815699e-05!GO:0032561;guanyl ribonucleotide binding;3.07323591235782e-05!GO:0019001;guanyl nucleotide binding;3.07323591235782e-05!GO:0031410;cytoplasmic vesicle;3.07438034015827e-05!GO:0005770;late endosome;3.2481361786881e-05!GO:0016787;hydrolase activity;3.48693037831783e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;3.4876769293844e-05!GO:0003724;RNA helicase activity;3.5074412967419e-05!GO:0008092;cytoskeletal protein binding;3.56522294982921e-05!GO:0007010;cytoskeleton organization and biogenesis;3.56522294982921e-05!GO:0031982;vesicle;3.64821785312391e-05!GO:0051329;interphase of mitotic cell cycle;3.87637115049949e-05!GO:0005905;coated pit;3.94891512376688e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.03549898358972e-05!GO:0000245;spliceosome assembly;4.77679118977621e-05!GO:0008361;regulation of cell size;5.07655092083573e-05!GO:0016049;cell growth;5.67058966028084e-05!GO:0044262;cellular carbohydrate metabolic process;6.0927140410041e-05!GO:0000279;M phase;6.17825830902647e-05!GO:0033116;ER-Golgi intermediate compartment membrane;6.19129054822254e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;6.25723818533296e-05!GO:0015399;primary active transmembrane transporter activity;6.25723818533296e-05!GO:0030867;rough endoplasmic reticulum membrane;6.25723818533296e-05!GO:0001558;regulation of cell growth;6.68499054823277e-05!GO:0044440;endosomal part;6.74837776066055e-05!GO:0010008;endosome membrane;6.74837776066055e-05!GO:0043566;structure-specific DNA binding;7.41442979602099e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;7.52673812478745e-05!GO:0051325;interphase;8.25943092053081e-05!GO:0016779;nucleotidyltransferase activity;8.26827838847138e-05!GO:0005773;vacuole;8.91802580848629e-05!GO:0005762;mitochondrial large ribosomal subunit;8.91802580848629e-05!GO:0000315;organellar large ribosomal subunit;8.91802580848629e-05!GO:0006613;cotranslational protein targeting to membrane;9.20659800884506e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;9.25445625819333e-05!GO:0015980;energy derivation by oxidation of organic compounds;0.00012184981474457!GO:0009892;negative regulation of metabolic process;0.000129882906488426!GO:0051789;response to protein stimulus;0.000150586125690166!GO:0006986;response to unfolded protein;0.000150586125690166!GO:0051028;mRNA transport;0.000152026267730423!GO:0043623;cellular protein complex assembly;0.000154257855007825!GO:0031968;organelle outer membrane;0.000154257855007825!GO:0048518;positive regulation of biological process;0.000154877682416289!GO:0065009;regulation of a molecular function;0.000157435220011182!GO:0019899;enzyme binding;0.000164359485138314!GO:0008654;phospholipid biosynthetic process;0.000190850143762917!GO:0019867;outer membrane;0.000203371814867402!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000206336778725675!GO:0003899;DNA-directed RNA polymerase activity;0.000214019494497744!GO:0009165;nucleotide biosynthetic process;0.000221114458630525!GO:0016044;membrane organization and biogenesis;0.000230687568233009!GO:0007243;protein kinase cascade;0.000242533530786086!GO:0005741;mitochondrial outer membrane;0.000245723383230286!GO:0005048;signal sequence binding;0.000254186348014049!GO:0008186;RNA-dependent ATPase activity;0.000257006772819021!GO:0016859;cis-trans isomerase activity;0.000261592020645571!GO:0051427;hormone receptor binding;0.000261592020645571!GO:0045941;positive regulation of transcription;0.000284226142932487!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000326394220993471!GO:0005885;Arp2/3 protein complex;0.000334385889284127!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000388126757146696!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000421382319458058!GO:0008250;oligosaccharyl transferase complex;0.000479906531697708!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000523344117386421!GO:0000151;ubiquitin ligase complex;0.000526242496793317!GO:0035257;nuclear hormone receptor binding;0.000537240676003814!GO:0005813;centrosome;0.000567956694113551!GO:0006082;organic acid metabolic process;0.000639962996778577!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.000675600757481151!GO:0030027;lamellipodium;0.000708695877991397!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000725391015214999!GO:0004004;ATP-dependent RNA helicase activity;0.000740237506713066!GO:0030663;COPI coated vesicle membrane;0.000762908872081932!GO:0030126;COPI vesicle coat;0.000762908872081932!GO:0006414;translational elongation;0.000767240047027291!GO:0019752;carboxylic acid metabolic process;0.000780763464786987!GO:0004576;oligosaccharyl transferase activity;0.000781612292124145!GO:0008632;apoptotic program;0.000786215212944023!GO:0019843;rRNA binding;0.000791719745665376!GO:0043021;ribonucleoprotein binding;0.000791719745665376!GO:0045893;positive regulation of transcription, DNA-dependent;0.000792365020029472!GO:0043284;biopolymer biosynthetic process;0.000800287688019388!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00086877394619207!GO:0043492;ATPase activity, coupled to movement of substances;0.000886826552719207!GO:0051920;peroxiredoxin activity;0.000902311066599905!GO:0000323;lytic vacuole;0.000945843808999238!GO:0005764;lysosome;0.000945843808999238!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000969016984763041!GO:0030137;COPI-coated vesicle;0.000981992459786427!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00100814553537881!GO:0005769;early endosome;0.00101553127403695!GO:0005815;microtubule organizing center;0.00105941792268412!GO:0007264;small GTPase mediated signal transduction;0.00113106656315377!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00115287756150437!GO:0007050;cell cycle arrest;0.00116204720775429!GO:0016481;negative regulation of transcription;0.00119404429672063!GO:0040008;regulation of growth;0.00129950959537676!GO:0006612;protein targeting to membrane;0.00130000972956653!GO:0007006;mitochondrial membrane organization and biogenesis;0.00130228658366078!GO:0050789;regulation of biological process;0.00131844594122257!GO:0018196;peptidyl-asparagine modification;0.0013697255351581!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0013697255351581!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00151361698471946!GO:0043681;protein import into mitochondrion;0.00159452054124578!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00174173245874002!GO:0030658;transport vesicle membrane;0.00178570502906707!GO:0006839;mitochondrial transport;0.00178570502906707!GO:0006626;protein targeting to mitochondrion;0.00180302149982511!GO:0000314;organellar small ribosomal subunit;0.00192232226968586!GO:0005763;mitochondrial small ribosomal subunit;0.00192232226968586!GO:0051101;regulation of DNA binding;0.00195457907806109!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00203576278587277!GO:0042802;identical protein binding;0.00205253550463714!GO:0030132;clathrin coat of coated pit;0.00216496950960344!GO:0030659;cytoplasmic vesicle membrane;0.00219858986560131!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00228044499969646!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00228044499969646!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00228044499969646!GO:0048468;cell development;0.00232391384042347!GO:0006891;intra-Golgi vesicle-mediated transport;0.00234361740856352!GO:0051270;regulation of cell motility;0.00238541107283732!GO:0001726;ruffle;0.00241225111455234!GO:0030133;transport vesicle;0.00266358759267608!GO:0015992;proton transport;0.00267579203121706!GO:0030134;ER to Golgi transport vesicle;0.00281009654250401!GO:0005819;spindle;0.00285262694218323!GO:0051168;nuclear export;0.00288832293360571!GO:0006595;polyamine metabolic process;0.00300035806959371!GO:0008033;tRNA processing;0.00309461393536915!GO:0006818;hydrogen transport;0.00315903906506678!GO:0031543;peptidyl-proline dioxygenase activity;0.00327247492132153!GO:0046483;heterocycle metabolic process;0.00336001942864994!GO:0048487;beta-tubulin binding;0.00341544994369972!GO:0006520;amino acid metabolic process;0.00370226984945118!GO:0044433;cytoplasmic vesicle part;0.00374480170132782!GO:0044452;nucleolar part;0.00374480170132782!GO:0030127;COPII vesicle coat;0.00406401301093772!GO:0012507;ER to Golgi transport vesicle membrane;0.00406401301093772!GO:0016197;endosome transport;0.00407147167572536!GO:0046474;glycerophospholipid biosynthetic process;0.00407471243431286!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00421439374496107!GO:0000059;protein import into nucleus, docking;0.00432149830885369!GO:0030118;clathrin coat;0.00432620901234715!GO:0017166;vinculin binding;0.00433052542234688!GO:0008610;lipid biosynthetic process;0.00439002777267593!GO:0030176;integral to endoplasmic reticulum membrane;0.00468925028189938!GO:0030660;Golgi-associated vesicle membrane;0.00477128825653924!GO:0030521;androgen receptor signaling pathway;0.00482813387496895!GO:0040011;locomotion;0.00482813387496895!GO:0031418;L-ascorbic acid binding;0.00493657212677327!GO:0045792;negative regulation of cell size;0.00506680554420789!GO:0048471;perinuclear region of cytoplasm;0.00508937493805148!GO:0000049;tRNA binding;0.005174811309191!GO:0022890;inorganic cation transmembrane transporter activity;0.00521531502953923!GO:0035258;steroid hormone receptor binding;0.00528823857650631!GO:0006950;response to stress;0.00554664883756751!GO:0007162;negative regulation of cell adhesion;0.00554949662432304!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00565452445398015!GO:0006778;porphyrin metabolic process;0.00568342690672742!GO:0033013;tetrapyrrole metabolic process;0.00568342690672742!GO:0019318;hexose metabolic process;0.00594072975353825!GO:0051098;regulation of binding;0.00606358408241638!GO:0008139;nuclear localization sequence binding;0.00615346807891161!GO:0005791;rough endoplasmic reticulum;0.00634241192891901!GO:0019798;procollagen-proline dioxygenase activity;0.0064034382229251!GO:0030308;negative regulation of cell growth;0.00643636697751603!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00677601819002524!GO:0006897;endocytosis;0.00687273345403428!GO:0010324;membrane invagination;0.00687273345403428!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00702523220051565!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00702523220051565!GO:0040012;regulation of locomotion;0.00702523220051565!GO:0004674;protein serine/threonine kinase activity;0.00702523220051565!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00707495926896789!GO:0008047;enzyme activator activity;0.00716998958351522!GO:0043433;negative regulation of transcription factor activity;0.00718191053480658!GO:0015631;tubulin binding;0.00721475812363403!GO:0006261;DNA-dependent DNA replication;0.00726523112671789!GO:0005874;microtubule;0.00731442000951002!GO:0046467;membrane lipid biosynthetic process;0.00773861804196908!GO:0032507;maintenance of cellular protein localization;0.00805074239262491!GO:0042168;heme metabolic process;0.00805418756309987!GO:0000082;G1/S transition of mitotic cell cycle;0.00809484838459523!GO:0005684;U2-dependent spliceosome;0.00827597054629832!GO:0009893;positive regulation of metabolic process;0.00878826444030993!GO:0016363;nuclear matrix;0.00881388451774002!GO:0016126;sterol biosynthetic process;0.00896485900927685!GO:0006007;glucose catabolic process;0.00935336751283085!GO:0008283;cell proliferation;0.0099225431930253!GO:0003729;mRNA binding;0.00994199057703198!GO:0006740;NADPH regeneration;0.00997062456715136!GO:0006098;pentose-phosphate shunt;0.00997062456715136!GO:0007265;Ras protein signal transduction;0.00999674688641635!GO:0051252;regulation of RNA metabolic process;0.010200366391203!GO:0005862;muscle thin filament tropomyosin;0.010200366391203!GO:0016301;kinase activity;0.0102326783499609!GO:0005774;vacuolar membrane;0.0102724453094057!GO:0005996;monosaccharide metabolic process;0.0103281606409495!GO:0046489;phosphoinositide biosynthetic process;0.0104548933358459!GO:0003682;chromatin binding;0.0105491324204174!GO:0009967;positive regulation of signal transduction;0.0106642977195274!GO:0031072;heat shock protein binding;0.0106677085448517!GO:0001944;vasculature development;0.0108768651719491!GO:0003779;actin binding;0.0109171538534786!GO:0048500;signal recognition particle;0.0109171538534786!GO:0006807;nitrogen compound metabolic process;0.010938420331974!GO:0022408;negative regulation of cell-cell adhesion;0.0109710893787658!GO:0012506;vesicle membrane;0.0119259311272227!GO:0004177;aminopeptidase activity;0.0120942882561739!GO:0045936;negative regulation of phosphate metabolic process;0.0120942882561739!GO:0030880;RNA polymerase complex;0.0121831571423329!GO:0006417;regulation of translation;0.012348580761062!GO:0001568;blood vessel development;0.0127429245528779!GO:0045185;maintenance of protein localization;0.0129004911631233!GO:0051235;maintenance of localization;0.0133743891076096!GO:0006402;mRNA catabolic process;0.0133743891076096!GO:0051287;NAD binding;0.0137950739062163!GO:0031124;mRNA 3'-end processing;0.014004580490114!GO:0001666;response to hypoxia;0.0142507724371967!GO:0006118;electron transport;0.0142507724371967!GO:0009308;amine metabolic process;0.014288505777821!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.014288505777821!GO:0015002;heme-copper terminal oxidase activity;0.014288505777821!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.014288505777821!GO:0004129;cytochrome-c oxidase activity;0.014288505777821!GO:0006509;membrane protein ectodomain proteolysis;0.0143076636094551!GO:0033619;membrane protein proteolysis;0.0143076636094551!GO:0003684;damaged DNA binding;0.0149516725388437!GO:0006739;NADP metabolic process;0.0151032003125426!GO:0006401;RNA catabolic process;0.0151847502027973!GO:0022415;viral reproductive process;0.0152109462452344!GO:0051651;maintenance of cellular localization;0.0152662882957631!GO:0005100;Rho GTPase activator activity;0.0155829114045068!GO:0008652;amino acid biosynthetic process;0.0155988010572356!GO:0031902;late endosome membrane;0.0155988010572356!GO:0033673;negative regulation of kinase activity;0.015723051923218!GO:0006469;negative regulation of protein kinase activity;0.015723051923218!GO:0050662;coenzyme binding;0.015890017872298!GO:0046822;regulation of nucleocytoplasmic transport;0.0162885352088317!GO:0046519;sphingoid metabolic process;0.0163376773005087!GO:0050790;regulation of catalytic activity;0.0163828656321268!GO:0030119;AP-type membrane coat adaptor complex;0.0164183995073581!GO:0030518;steroid hormone receptor signaling pathway;0.0164417787955988!GO:0008637;apoptotic mitochondrial changes;0.0164417787955988!GO:0005975;carbohydrate metabolic process;0.0167640909618161!GO:0051348;negative regulation of transferase activity;0.0168314798177172!GO:0007030;Golgi organization and biogenesis;0.0171497176821204!GO:0006779;porphyrin biosynthetic process;0.017164453995904!GO:0033014;tetrapyrrole biosynthetic process;0.017164453995904!GO:0030865;cortical cytoskeleton organization and biogenesis;0.017225115431345!GO:0005832;chaperonin-containing T-complex;0.0174025868456938!GO:0006383;transcription from RNA polymerase III promoter;0.0174025868456938!GO:0009889;regulation of biosynthetic process;0.0176543852808365!GO:0031272;regulation of pseudopodium formation;0.0181094110257774!GO:0031269;pseudopodium formation;0.0181094110257774!GO:0031344;regulation of cell projection organization and biogenesis;0.0181094110257774!GO:0031268;pseudopodium organization and biogenesis;0.0181094110257774!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0181094110257774!GO:0031274;positive regulation of pseudopodium formation;0.0181094110257774!GO:0051539;4 iron, 4 sulfur cluster binding;0.018322853783234!GO:0003746;translation elongation factor activity;0.0183429068778905!GO:0008312;7S RNA binding;0.0184966786435409!GO:0045892;negative regulation of transcription, DNA-dependent;0.0189617197509837!GO:0001953;negative regulation of cell-matrix adhesion;0.0190543708676114!GO:0031529;ruffle organization and biogenesis;0.0190754185482349!GO:0043488;regulation of mRNA stability;0.0196692477514235!GO:0043487;regulation of RNA stability;0.0196692477514235!GO:0005092;GDP-dissociation inhibitor activity;0.0199033463435702!GO:0044437;vacuolar part;0.0200240703920726!GO:0006979;response to oxidative stress;0.0200240703920726!GO:0043065;positive regulation of apoptosis;0.0200773962888041!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0205019987923099!GO:0043022;ribosome binding;0.0206822851648199!GO:0001952;regulation of cell-matrix adhesion;0.0207660291981611!GO:0051087;chaperone binding;0.0212006685754342!GO:0009303;rRNA transcription;0.0212330632781259!GO:0048037;cofactor binding;0.0212330632781259!GO:0030131;clathrin adaptor complex;0.021413416680213!GO:0006352;transcription initiation;0.0215375684283077!GO:0031326;regulation of cellular biosynthetic process;0.0218497652546362!GO:0051272;positive regulation of cell motility;0.0219667431995571!GO:0040017;positive regulation of locomotion;0.0219667431995571!GO:0030125;clathrin vesicle coat;0.0219912314034429!GO:0030665;clathrin coated vesicle membrane;0.0219912314034429!GO:0006519;amino acid and derivative metabolic process;0.0223574531937394!GO:0006611;protein export from nucleus;0.0226810155598543!GO:0051271;negative regulation of cell motility;0.0227622839330749!GO:0003756;protein disulfide isomerase activity;0.0227622839330749!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0227622839330749!GO:0000287;magnesium ion binding;0.0228384455870489!GO:0050811;GABA receptor binding;0.0230024067007988!GO:0043068;positive regulation of programmed cell death;0.0231990685580255!GO:0003711;transcription elongation regulator activity;0.0232463025879463!GO:0007040;lysosome organization and biogenesis;0.0233666855568808!GO:0006783;heme biosynthetic process;0.0235966978205594!GO:0030041;actin filament polymerization;0.023667754332065!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0239905256137503!GO:0000428;DNA-directed RNA polymerase complex;0.0239905256137503!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0241960400390663!GO:0045047;protein targeting to ER;0.0241960400390663!GO:0051059;NF-kappaB binding;0.0242227870121517!GO:0051716;cellular response to stimulus;0.0245401852987431!GO:0005096;GTPase activator activity;0.0251574688026246!GO:0035035;histone acetyltransferase binding;0.0255807465036969!GO:0032508;DNA duplex unwinding;0.0259821705331945!GO:0032392;DNA geometric change;0.0259821705331945!GO:0030833;regulation of actin filament polymerization;0.0259827194850814!GO:0000096;sulfur amino acid metabolic process;0.0267714398263341!GO:0006607;NLS-bearing substrate import into nucleus;0.0267714398263341!GO:0031301;integral to organelle membrane;0.0269352468288362!GO:0032906;transforming growth factor-beta2 production;0.0275796067003635!GO:0032909;regulation of transforming growth factor-beta2 production;0.0275796067003635!GO:0042326;negative regulation of phosphorylation;0.0276597987787853!GO:0016584;nucleosome positioning;0.0280976216141886!GO:0007242;intracellular signaling cascade;0.0284080708479963!GO:0046365;monosaccharide catabolic process;0.0284080708479963!GO:0006405;RNA export from nucleus;0.0284790825780229!GO:0000209;protein polyubiquitination;0.0290122149056653!GO:0003678;DNA helicase activity;0.0293683234319506!GO:0051090;regulation of transcription factor activity;0.029438206438562!GO:0008538;proteasome activator activity;0.0296108792731244!GO:0003690;double-stranded DNA binding;0.0298166484904667!GO:0006984;ER-nuclear signaling pathway;0.0301343884069975!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0301343884069975!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0315014932170408!GO:0010257;NADH dehydrogenase complex assembly;0.0315014932170408!GO:0033108;mitochondrial respiratory chain complex assembly;0.0315014932170408!GO:0000339;RNA cap binding;0.0315695595713079!GO:0005765;lysosomal membrane;0.0315695595713079!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0315701657356008!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0316380105618876!GO:0005869;dynactin complex;0.0316930192714516!GO:0030433;ER-associated protein catabolic process;0.0320684957169786!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0320684957169786!GO:0015036;disulfide oxidoreductase activity;0.0327749315378247!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0327894389140631!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0329177033926039!GO:0030334;regulation of cell migration;0.0331265363409062!GO:0050681;androgen receptor binding;0.0334156979326979!GO:0006518;peptide metabolic process;0.0336532770210318!GO:0008147;structural constituent of bone;0.0336532770210318!GO:0000075;cell cycle checkpoint;0.0339337396715672!GO:0065007;biological regulation;0.0346622235228499!GO:0008154;actin polymerization and/or depolymerization;0.0351195319012607!GO:0031901;early endosome membrane;0.0351195319012607!GO:0048144;fibroblast proliferation;0.0356587843003449!GO:0048145;regulation of fibroblast proliferation;0.0356587843003449!GO:0006378;mRNA polyadenylation;0.0358115111156848!GO:0005637;nuclear inner membrane;0.0358298275855795!GO:0043189;H4/H2A histone acetyltransferase complex;0.035833381436628!GO:0046426;negative regulation of JAK-STAT cascade;0.0360351593471085!GO:0007346;regulation of progression through mitotic cell cycle;0.0361563697607023!GO:0045926;negative regulation of growth;0.0362826797418372!GO:0006672;ceramide metabolic process;0.0367355570177105!GO:0030031;cell projection biogenesis;0.0373130495842528!GO:0051128;regulation of cellular component organization and biogenesis;0.037688918707855!GO:0031325;positive regulation of cellular metabolic process;0.0381786433370444!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0385679985698961!GO:0030032;lamellipodium biogenesis;0.0389783673235327!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0395200212540688!GO:0019320;hexose catabolic process;0.0398404002425149!GO:0007569;cell aging;0.0400423665497926!GO:0006268;DNA unwinding during replication;0.0406774546428258!GO:0006650;glycerophospholipid metabolic process;0.0417741000611803!GO:0006066;alcohol metabolic process;0.0422768259063302!GO:0008320;protein transmembrane transporter activity;0.0424084166293072!GO:0030496;midbody;0.0424084166293072!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0427470963956018!GO:0006596;polyamine biosynthetic process;0.0428096335168809!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0434635702020499!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0434635702020499!GO:0007033;vacuole organization and biogenesis;0.0436632760716688!GO:0006289;nucleotide-excision repair;0.0439552553502403!GO:0016272;prefoldin complex;0.0442092830407475!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0444733908301927!GO:0045045;secretory pathway;0.045439546845031!GO:0031123;RNA 3'-end processing;0.0457236309623304!GO:0033559;unsaturated fatty acid metabolic process;0.045831569280829!GO:0006636;unsaturated fatty acid biosynthetic process;0.045831569280829!GO:0040013;negative regulation of locomotion;0.0468126662244136!GO:0009112;nucleobase metabolic process;0.0470647606704415!GO:0046164;alcohol catabolic process;0.0471801853898525!GO:0043495;protein anchor;0.0476235374683167!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0481202685760841!GO:0000792;heterochromatin;0.048165625064508!GO:0035267;NuA4 histone acetyltransferase complex;0.0482178158295062!GO:0050178;phenylpyruvate tautomerase activity;0.0484681242127774!GO:0000123;histone acetyltransferase complex;0.0485929752007197!GO:0007051;spindle organization and biogenesis;0.0487695316323249!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0487695316323249!GO:0006790;sulfur metabolic process;0.0490126335406864!GO:0022884;macromolecule transmembrane transporter activity;0.0490126335406864!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0490126335406864!GO:0006308;DNA catabolic process;0.0491599792443231!GO:0001725;stress fiber;0.0496387064261032!GO:0032432;actin filament bundle;0.0496387064261032
|sample_id=11345
|sample_note=
|sample_sex=female
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=heart
|top_motifs=IKZF1:1.96794455276;SRF:1.76913803398;POU3F1..4:1.62793989759;GTF2A1,2:1.62383309185;GLI1..3:1.58983106738;HOX{A5,B5}:1.38032846644;ZNF238:1.16745790634;TFAP4:1.07580503439;PPARG:1.05357018835;ZNF148:1.03281186908;HIF1A:0.991010629214;TP53:0.981940659854;EBF1:0.977661812354;SPZ1:0.952262001121;LHX3,4:0.920832345469;POU2F1..3:0.899582142628;GCM1,2:0.885929621611;DBP:0.832942730355;EN1,2:0.80115179832;SOX{8,9,10}:0.794886750047;RXRA_VDR{dimer}:0.742188797178;XCPE1{core}:0.732903562316;NFATC1..3:0.707114873231;MAFB:0.699004979619;SMAD1..7,9:0.698164334426;TLX1..3_NFIC{dimer}:0.687679032927;ONECUT1,2:0.687047586988;HSF1,2:0.64832481849;UFEwm:0.639677540735;TEAD1:0.638037629935;TFCP2:0.620561572237;ATF6:0.616239831222;HMGA1,2:0.613038718684;ZIC1..3:0.590095147132;NANOG{mouse}:0.584791947111;XBP1:0.571357893072;HOXA9_MEIS1:0.565157843244;AR:0.540068051324;PAX8:0.530066383586;TBP:0.509881519631;TAL1_TCF{3,4,12}:0.502169650324;SOX17:0.498116303178;ZNF423:0.487607523848;ZBTB6:0.472297430557;HAND1,2:0.454651211202;ESR1:0.441326220217;NR6A1:0.436689821594;NFE2L2:0.432794117637;HLF:0.375861904735;LEF1_TCF7_TCF7L1,2:0.349131161956;GTF2I:0.338788736662;NANOG:0.336472791537;CEBPA,B_DDIT3:0.317178761661;GFI1B:0.304643876064;MYBL2:0.302668227928;NKX2-2,8:0.297148294646;PAX3,7:0.29329695083;TFAP2{A,C}:0.280219392731;CDC5L:0.278424811288;BACH2:0.276848741351;STAT2,4,6:0.273159759785;HES1:0.267993860727;RXR{A,B,G}:0.260275025752;MTE{core}:0.254498047508;HMX1:0.231254792314;NFE2L1:0.21685504017;FOXL1:0.209492962313;NR5A1,2:0.186233866056;NFKB1_REL_RELA:0.180072411696;FOS_FOS{B,L1}_JUN{B,D}:0.173120013696;ADNP_IRX_SIX_ZHX:0.163751729199;ALX4:0.15322863289;PBX1:0.144466964375;SOX2:0.14437776282;TFAP2B:0.134644093281;STAT5{A,B}:0.133259290253;REST:0.112969174679;MEF2{A,B,C,D}:0.112879378166;KLF4:0.102288513801;NFE2:0.0904099674931;NKX3-2:0.089726786906;PAX2:0.076660485878;NKX2-1,4:0.0617814793549;FOSL2:0.0521074171088;NHLH1,2:0.0372159687926;ETS1,2:0.0315450657041;MAZ:0.0247154100864;HNF1A:0.0206526394348;GATA6:0.0153932974974;ATF2:0.0141168745708;NR3C1:0.00531196623648;JUN:0.00523248781429;ZNF384:-0.00616944267628;HIC1:-0.00719744510028;NKX3-1:-0.0235402960336;POU1F1:-0.0384647909815;NKX2-3_NKX2-5:-0.0441188212329;PATZ1:-0.0448139939267;TFDP1:-0.0484022262561;SP1:-0.090027143626;ESRRA:-0.103542902569;bHLH_family:-0.106962599532;TOPORS:-0.117009048421;HBP1_HMGB_SSRP1_UBTF:-0.120412840028;GFI1:-0.143136864515;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.146557359818;AHR_ARNT_ARNT2:-0.157841652925;MYB:-0.158779246279;PITX1..3:-0.160190568631;NR1H4:-0.167164354338;FOXA2:-0.171099848462;HNF4A_NR2F1,2:-0.17359963133;LMO2:-0.175740539719;PAX6:-0.177057986084;TBX4,5:-0.210137948068;MZF1:-0.211873669754;CRX:-0.220140881192;ZNF143:-0.224518664847;E2F1..5:-0.225658598499;PRRX1,2:-0.246142913361;RORA:-0.246723497303;ELK1,4_GABP{A,B1}:-0.249272338479;NFIX:-0.251051141267;POU5F1:-0.252470382146;RFX1:-0.259850137105;OCT4_SOX2{dimer}:-0.260557533439;NFIL3:-0.270261158339;AIRE:-0.272767455997;FOX{I1,J2}:-0.275218634115;PAX5:-0.282366461256;SPIB:-0.291178715271;POU6F1:-0.309461117285;FOX{F1,F2,J1}:-0.335041439645;ELF1,2,4:-0.352959857039;NFY{A,B,C}:-0.355952526776;MTF1:-0.375385180829;EVI1:-0.378575450677;RREB1:-0.403541044604;PRDM1:-0.405082669104;MYOD1:-0.425732606448;GZF1:-0.43298244216;MED-1{core}:-0.482532833025;SPI1:-0.482616386755;RUNX1..3:-0.487838899197;FOX{D1,D2}:-0.512756723964;SNAI1..3:-0.539194207804;VSX1,2:-0.564183027827;IKZF2:-0.574341682238;EP300:-0.575952628549;FOXP3:-0.589502878624;FOXQ1:-0.621978658263;ARID5B:-0.646702076957;HOX{A4,D4}:-0.648906392404;ATF5_CREB3:-0.658196999368;ATF4:-0.658879525949;ZEB1:-0.666075204944;NRF1:-0.669915442701;GATA4:-0.683135434893;EGR1..3:-0.708882331209;ZFP161:-0.718544243009;MYFfamily:-0.751785657358;TEF:-0.784472587907;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.793277084229;TLX2:-0.800125758965;CUX2:-0.82004493597;SOX5:-0.825392463814;PAX1,9:-0.83686407589;CDX1,2,4:-0.845242438797;TGIF1:-0.850131962302;SREBF1,2:-0.886337051194;IRF7:-0.908424748274;HOX{A6,A7,B6,B7}:-0.920730288459;CREB1:-0.933668249673;YY1:-0.946781090054;PAX4:-0.950798950081;RBPJ:-0.962890081135;DMAP1_NCOR{1,2}_SMARC:-0.963546470238;FOXN1:-0.975215254174;IRF1,2:-1.00689747791;BPTF:-1.01368163786;FOXP1:-1.03314863646;BREu{core}:-1.07097185166;T:-1.12873765719;ZBTB16:-1.21715759587;RFX2..5_RFXANK_RFXAP:-1.21998687986;FOXM1:-1.32641239969;NKX6-1,2:-1.3323158349;STAT1,3:-1.35393882002;ALX1:-1.48130896224;FOXD3:-1.53888125363;FOXO1,3,4:-1.58288412683;PDX1:-1.61104572826
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11345-117G4;search_select_hide=table117:FF:11345-117G4
}}
}}

Latest revision as of 17:53, 4 June 2020

Name:Fibroblast - Cardiac, donor2
Species:Human (Homo sapiens)
Library ID:CNhs11378
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueheart
dev stage21 weeks old fetus
sexfemale
ageemrbyo 21week
cell typefibroblast
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number2112
catalog numberCA306-R10f
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005873
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11378 CAGE DRX008244 DRR009116
Accession ID Hg19

Library idBAMCTSS
CNhs11378 DRZ000541 DRZ001926
Accession ID Hg38

Library idBAMCTSS
CNhs11378 DRZ011891 DRZ013276
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005873
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10012.AGTCAA sRNA-Seq DRX037192 DRR041558
Accession ID Hg19

Library idBAMCTSS
SRhi10012.AGTCAA DRZ007200


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.168
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.124
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.315
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.501
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.243
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.228
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.551
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.618
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.315
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.548
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.0628
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.802
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.315
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.624
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.826
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.624
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.624
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11378

Jaspar motifP-value
MA0002.20.189
MA0003.10.188
MA0004.10.455
MA0006.10.278
MA0007.10.0819
MA0009.10.208
MA0014.10.631
MA0017.10.723
MA0018.20.0148
MA0019.10.621
MA0024.10.0357
MA0025.10.776
MA0027.10.703
MA0028.10.205
MA0029.10.202
MA0030.10.162
MA0031.10.0318
MA0035.20.353
MA0038.10.962
MA0039.20.854
MA0040.10.447
MA0041.10.343
MA0042.10.819
MA0043.10.00511
MA0046.10.636
MA0047.20.754
MA0048.10.266
MA0050.13.3178e-9
MA0051.17.86287e-4
MA0052.10.868
MA0055.10.0742
MA0057.10.298
MA0058.10.167
MA0059.10.247
MA0060.10.293
MA0061.10.144
MA0062.20.00629
MA0065.20.0939
MA0066.10.177
MA0067.10.0411
MA0068.10.932
MA0069.10.339
MA0070.10.585
MA0071.10.282
MA0072.10.525
MA0073.10.421
MA0074.10.266
MA0076.10.0244
MA0077.10.041
MA0078.10.142
MA0079.20.883
MA0080.20.00155
MA0081.10.0809
MA0083.14.52996e-8
MA0084.10.365
MA0087.10.598
MA0088.10.3
MA0090.10.00211
MA0091.10.0393
MA0092.10.028
MA0093.10.411
MA0099.22.91631e-7
MA0100.10.132
MA0101.10.184
MA0102.20.0733
MA0103.10.727
MA0104.20.491
MA0105.10.13
MA0106.10.201
MA0107.10.211
MA0108.22.6263e-5
MA0111.10.0763
MA0112.20.00159
MA0113.10.212
MA0114.10.577
MA0115.10.406
MA0116.10.0841
MA0117.10.841
MA0119.10.0525
MA0122.10.492
MA0124.10.98
MA0125.10.992
MA0131.10.383
MA0135.10.577
MA0136.10.0027
MA0137.20.0969
MA0138.20.554
MA0139.10.671
MA0140.10.396
MA0141.10.372
MA0142.10.198
MA0143.10.955
MA0144.10.69
MA0145.10.137
MA0146.10.12
MA0147.10.903
MA0148.10.869
MA0149.10.402
MA0150.10.109
MA0152.10.126
MA0153.10.43
MA0154.10.0406
MA0155.10.0407
MA0156.10.297
MA0157.10.064
MA0159.10.0329
MA0160.10.568
MA0162.10.0593
MA0163.10.0206
MA0164.10.755
MA0258.10.00323
MA0259.10.966



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11378

Novel motifP-value
10.217
100.842
1000.587
1010.383
1020.779
1030.408
1040.195
1050.153
1060.0119
1070.0189
1080.463
1090.0829
110.0555
1100.353
1110.817
1120.658
1130.625
1140.261
1150.172
1160.0743
1170.876
1180.743
1190.0743
120.892
1200.203
1210.502
1220.932
1230.0813
1240.972
1250.988
1260.611
1270.468
1280.185
1290.788
130.599
1300.557
1310.194
1320.351
1330.982
1340.794
1350.0482
1360.666
1370.476
1380.546
1390.0511
140.761
1400.872
1410.592
1420.427
1430.00832
1440.83
1450.156
1460.176
1470.411
1480.622
1490.0189
150.336
1500.0639
1510.62
1520.0319
1530.813
1540.799
1550.259
1560.346
1570.759
1580.177
1590.638
160.173
1600.041
1610.403
1620.294
1630.425
1640.522
1650.326
1660.832
1670.498
1680.949
1690.0243
170.105
180.0479
190.0382
20.527
200.427
210.753
220.159
230.00858
240.246
250.579
260.0566
270.604
280.259
290.846
30.44
300.512
310.553
324.97656e-8
330.575
340.137
350.902
360.81
370.118
380.558
390.33
40.25
400.207
410.671
420.609
430.173
440.484
450.346
460.0722
470.24
480.0624
490.206
50.371
500.724
510.654
520.649
530.629
540.355
550.868
560.657
570.234
580.888
590.00809
60.697
600.448
610.903
620.257
630.294
640.129
650.0442
660.444
670.269
680.0711
690.676
70.599
700.199
710.12
720.711
730.0291
740.903
750.485
760.525
770.033
780.428
790.00329
80.0588
800.513
810.79
820.747
830.592
840.672
850.0241
860.799
870.0721
880.112
890.0434
90.337
900.674
910.181
920.79
930.772
940.237
950.249
960.79
970.259
980.876
990.0345



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11378


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002494 (cardiocyte)
0000057 (fibroblast)
0002548 (cardiac fibroblast)

UBERON: Anatomy
0000468 (multi-cellular organism)
0007100 (primary circulatory organ)
0000948 (heart)
0002384 (connective tissue)
0000479 (tissue)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0010317 (germ layer / neural crest derived structure)
0004535 (cardiovascular system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000059 (human cardiac fibroblast sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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