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{{f5samples
{{f5samples
|id=FF:10490-107B4
|DRA_sample_Accession=CAGE@SAMD00005339
|name=prostate cancer cell line:DU145
|accession_numbers=CAGE;DRX007987;DRR008859;DRZ000284;DRZ001669;DRZ011634;DRZ013019
|sample_id=10490
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002367,UBERON:0005156,UBERON:0004119,UBERON:0000062,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002530,UBERON:0010147,UBERON:0010317,UBERON:0003937,UBERON:0005399,UBERON:0003101,UBERON:0000079
|rna_tube_id=107B4
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
|rna_box=107
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:7,DOID:305
|rna_position=B4
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0101019,FF:0101033,FF:0101332
|sample_cell_lot=
|comment=
|sample_cell_catalog=RCB2143
|created_by=
|sample_company=RIKEN Bioresource centre
|creation_date=
|rna_lot_number=
|data_phase=2
|rna_catalog_number=
|datafreeze_phase=2
|sample_species=Human (Homo sapiens)
|def=
|sample_strain=
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|rna_sample_type=total RNA
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|ancestors_in_disease_facet=DOID:0050687,DOID:14566,DOID:162,DOID:305,DOID:4,DOID:7
|sample_description=
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Line 66: Line 40:
|fonse_treatment=
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|top_motifs=
|comment=
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|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/prostate%2520cancer%2520cell%2520line%253aDU145.CNhs11260.10490-107B4.hg38.nobarcode.ctss.bed.gz
|id=FF:10490-107B4
|is_a=EFO:0002091;;FF:0000210;;FF:0101332
|is_obsolete=
|library_id=CNhs11260
|library_id_phase_based=2:CNhs11260
|microRNAs=
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|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10490
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10490
|name=prostate cancer cell line:DU145
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|rna_box=107
|rna_catalog_number=
|rna_concentration=2.33707
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=2.02
|rna_od260/280=2.06
|rna_position=B4
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=107B4
|rna_weight_ug=58.42675
|sample_age=69
|sample_category=cell lines
|sample_cell_catalog=RCB2143
|sample_cell_line=DU145
|sample_cell_lot=
|sample_cell_type=unclassifiable
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_company=RIKEN Bioresource centre
|sample_description=
|sample_dev_stage=
|sample_disease=prostate cancer
|sample_donor(cell lot)=
|sample_ethnicity=C
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;6.421557954328e-280!GO:0043226;organelle;7.03944896880694e-228!GO:0043229;intracellular organelle;2.59031892474953e-227!GO:0043227;membrane-bound organelle;2.42697939929845e-219!GO:0043231;intracellular membrane-bound organelle;2.42697939929845e-219!GO:0005737;cytoplasm;5.58419066756614e-207!GO:0044422;organelle part;1.65396883847426e-168!GO:0044446;intracellular organelle part;8.03790206093028e-167!GO:0044444;cytoplasmic part;8.30571869360604e-144!GO:0032991;macromolecular complex;1.65162058510916e-111!GO:0044237;cellular metabolic process;2.08374760524627e-98!GO:0044238;primary metabolic process;2.78364643791251e-96!GO:0030529;ribonucleoprotein complex;5.06048433144569e-96!GO:0005634;nucleus;7.35159429953044e-93!GO:0043170;macromolecule metabolic process;1.54253537243382e-88!GO:0044428;nuclear part;1.90048976139395e-86!GO:0043233;organelle lumen;7.55048269251076e-83!GO:0031974;membrane-enclosed lumen;7.55048269251076e-83!GO:0005739;mitochondrion;1.26851422644206e-82!GO:0003723;RNA binding;1.14880893358499e-79!GO:0005515;protein binding;2.29958156522087e-68!GO:0005840;ribosome;1.13277864830566e-57!GO:0006396;RNA processing;4.19557341055595e-56!GO:0043234;protein complex;5.33966526196532e-56!GO:0006412;translation;9.58054224145245e-55!GO:0031090;organelle membrane;1.19690510644656e-54!GO:0044429;mitochondrial part;2.48135609913386e-53!GO:0043283;biopolymer metabolic process;6.4717713229356e-53!GO:0016043;cellular component organization and biogenesis;1.74932405348156e-52!GO:0003735;structural constituent of ribosome;1.1290654908333e-49!GO:0031967;organelle envelope;1.94067849424778e-49!GO:0031975;envelope;5.64192079270579e-49!GO:0031981;nuclear lumen;5.98047674850907e-49!GO:0019538;protein metabolic process;8.70448455273435e-49!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.99304368766471e-46!GO:0043228;non-membrane-bound organelle;1.87719223169736e-45!GO:0043232;intracellular non-membrane-bound organelle;1.87719223169736e-45!GO:0009058;biosynthetic process;1.33528184990992e-44!GO:0033036;macromolecule localization;1.76427913914176e-44!GO:0015031;protein transport;5.18063921344112e-44!GO:0044260;cellular macromolecule metabolic process;1.85932836554072e-43!GO:0010467;gene expression;2.02230141507558e-43!GO:0044267;cellular protein metabolic process;2.25850180128849e-43!GO:0044249;cellular biosynthetic process;3.21705692296519e-43!GO:0033279;ribosomal subunit;1.94172220626987e-42!GO:0005829;cytosol;2.74791151082815e-42!GO:0016071;mRNA metabolic process;3.47613546634978e-42!GO:0009059;macromolecule biosynthetic process;1.12619695254821e-41!GO:0008104;protein localization;1.08367461933652e-40!GO:0045184;establishment of protein localization;6.92858038561262e-40!GO:0006259;DNA metabolic process;1.18844726834837e-39!GO:0008380;RNA splicing;1.98538567434128e-39!GO:0006996;organelle organization and biogenesis;7.91295963222432e-39!GO:0007049;cell cycle;3.28703657767851e-37!GO:0006397;mRNA processing;4.88729363014839e-37!GO:0046907;intracellular transport;6.39654389340389e-37!GO:0065003;macromolecular complex assembly;1.33149859273812e-34!GO:0005740;mitochondrial envelope;4.17233595536203e-33!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.20563675579936e-32!GO:0000166;nucleotide binding;1.9551384317298e-31!GO:0019866;organelle inner membrane;2.06998598579519e-31!GO:0022607;cellular component assembly;6.24971686848948e-31!GO:0031966;mitochondrial membrane;9.03486313614736e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.12749897174765e-30!GO:0006886;intracellular protein transport;2.21832063064769e-29!GO:0005743;mitochondrial inner membrane;7.13502797522864e-29!GO:0005681;spliceosome;1.09794557680707e-28!GO:0005654;nucleoplasm;1.35030115517514e-28!GO:0016462;pyrophosphatase activity;7.8965446325694e-28!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;9.64780672782975e-28!GO:0000278;mitotic cell cycle;1.09420318214778e-27!GO:0022402;cell cycle process;1.46334557788245e-27!GO:0016817;hydrolase activity, acting on acid anhydrides;1.7071457092795e-27!GO:0017111;nucleoside-triphosphatase activity;1.4895115053969e-26!GO:0003676;nucleic acid binding;4.06851116046501e-26!GO:0051649;establishment of cellular localization;5.10288772812547e-25!GO:0051641;cellular localization;9.705833027877e-25!GO:0012505;endomembrane system;2.71233334410096e-24!GO:0006974;response to DNA damage stimulus;4.68984695823539e-24!GO:0031980;mitochondrial lumen;6.68245563396388e-24!GO:0005759;mitochondrial matrix;6.68245563396388e-24!GO:0044445;cytosolic part;1.55042943270211e-23!GO:0006119;oxidative phosphorylation;3.80879150418644e-23!GO:0044451;nucleoplasm part;4.39615008854041e-23!GO:0032553;ribonucleotide binding;7.86419079105141e-23!GO:0032555;purine ribonucleotide binding;7.86419079105141e-23!GO:0017076;purine nucleotide binding;8.99714730404537e-23!GO:0016874;ligase activity;9.34235810011504e-23!GO:0022403;cell cycle phase;1.6848993810091e-22!GO:0015935;small ribosomal subunit;3.19837711783641e-22!GO:0000087;M phase of mitotic cell cycle;4.56392600615033e-22!GO:0044455;mitochondrial membrane part;8.17445285999037e-22!GO:0007067;mitosis;1.32628055367287e-21!GO:0015934;large ribosomal subunit;2.45236090889041e-21!GO:0005730;nucleolus;5.70171159470649e-21!GO:0006281;DNA repair;6.07388377114935e-21!GO:0006512;ubiquitin cycle;7.41105021784694e-21!GO:0005694;chromosome;7.98874208000266e-21!GO:0051301;cell division;3.82484269918661e-20!GO:0051186;cofactor metabolic process;5.69991596686046e-20!GO:0006457;protein folding;1.37845596803087e-19!GO:0016070;RNA metabolic process;2.54717547005839e-19!GO:0005524;ATP binding;4.29475440147647e-19!GO:0000279;M phase;4.29475440147647e-19!GO:0006260;DNA replication;5.79346733691932e-19!GO:0032559;adenyl ribonucleotide binding;8.35344219886325e-19!GO:0044265;cellular macromolecule catabolic process;1.13310622229157e-18!GO:0022618;protein-RNA complex assembly;1.22534573794212e-18!GO:0030554;adenyl nucleotide binding;1.43389839063192e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;3.12341753303492e-18!GO:0019941;modification-dependent protein catabolic process;4.72310594802015e-18!GO:0043632;modification-dependent macromolecule catabolic process;4.72310594802015e-18!GO:0044427;chromosomal part;5.13953805315083e-18!GO:0044257;cellular protein catabolic process;7.92211416112406e-18!GO:0006511;ubiquitin-dependent protein catabolic process;8.47791845234399e-18!GO:0044248;cellular catabolic process;1.30219293075585e-17!GO:0000502;proteasome complex (sensu Eukaryota);2.47841833236439e-17!GO:0005746;mitochondrial respiratory chain;2.80232694984583e-17!GO:0005635;nuclear envelope;3.22992919606822e-17!GO:0005783;endoplasmic reticulum;3.22992919606822e-17!GO:0009719;response to endogenous stimulus;4.50522802755605e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.27872654014194e-17!GO:0008135;translation factor activity, nucleic acid binding;6.01094805536073e-17!GO:0005761;mitochondrial ribosome;2.18439909875476e-16!GO:0000313;organellar ribosome;2.18439909875476e-16!GO:0006732;coenzyme metabolic process;2.37153283752749e-16!GO:0044432;endoplasmic reticulum part;3.02597143364336e-16!GO:0043285;biopolymer catabolic process;3.04712504502913e-16!GO:0048770;pigment granule;3.47716921917968e-16!GO:0042470;melanosome;3.47716921917968e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.98122307852846e-16!GO:0051276;chromosome organization and biogenesis;1.0836979128613e-15!GO:0016887;ATPase activity;1.57654457887363e-15!GO:0009057;macromolecule catabolic process;1.71013326815927e-15!GO:0042623;ATPase activity, coupled;1.71568127677764e-15!GO:0050136;NADH dehydrogenase (quinone) activity;2.07724301088792e-15!GO:0003954;NADH dehydrogenase activity;2.07724301088792e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.07724301088792e-15!GO:0031965;nuclear membrane;4.22579456698541e-15!GO:0044453;nuclear membrane part;4.95692975350702e-15!GO:0043412;biopolymer modification;6.23472466145287e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;6.38743084573575e-15!GO:0000375;RNA splicing, via transesterification reactions;6.38743084573575e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;6.38743084573575e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);7.39255003298344e-15!GO:0030163;protein catabolic process;9.21608224819756e-15!GO:0042254;ribosome biogenesis and assembly;1.5468533332379e-14!GO:0006605;protein targeting;1.5468533332379e-14!GO:0051082;unfolded protein binding;2.0836941352163e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.98312759502352e-14!GO:0008134;transcription factor binding;3.6084641448617e-14!GO:0042775;organelle ATP synthesis coupled electron transport;4.71372644795927e-14!GO:0042773;ATP synthesis coupled electron transport;4.71372644795927e-14!GO:0006399;tRNA metabolic process;7.89970547145607e-14!GO:0048193;Golgi vesicle transport;1.57867010892643e-13!GO:0030964;NADH dehydrogenase complex (quinone);1.96469627899471e-13!GO:0045271;respiratory chain complex I;1.96469627899471e-13!GO:0005747;mitochondrial respiratory chain complex I;1.96469627899471e-13!GO:0051726;regulation of cell cycle;2.63080247795169e-13!GO:0000074;regulation of progression through cell cycle;3.36215644762073e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.75468272108869e-13!GO:0016192;vesicle-mediated transport;5.29770167922598e-13!GO:0005643;nuclear pore;9.2683985126593e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.03959181070953e-12!GO:0006464;protein modification process;1.30116920671973e-12!GO:0005789;endoplasmic reticulum membrane;2.15890622821722e-12!GO:0012501;programmed cell death;2.70891966062854e-12!GO:0005794;Golgi apparatus;2.79883770294132e-12!GO:0006915;apoptosis;3.1929497862895e-12!GO:0008639;small protein conjugating enzyme activity;4.09417538138037e-12!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.29612678822696e-12!GO:0004386;helicase activity;4.50817080616812e-12!GO:0003743;translation initiation factor activity;5.35870541867382e-12!GO:0016604;nuclear body;5.44110484997128e-12!GO:0004842;ubiquitin-protein ligase activity;6.55791659211594e-12!GO:0006913;nucleocytoplasmic transport;6.95980213576877e-12!GO:0009055;electron carrier activity;9.37788624840984e-12!GO:0006413;translational initiation;1.40223981574493e-11!GO:0019787;small conjugating protein ligase activity;1.74366888291662e-11!GO:0051169;nuclear transport;1.92060515375122e-11!GO:0043687;post-translational protein modification;2.10318650581454e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;2.14264991796939e-11!GO:0051188;cofactor biosynthetic process;2.8376006720267e-11!GO:0065002;intracellular protein transport across a membrane;3.53237700327793e-11!GO:0050657;nucleic acid transport;3.77890044459361e-11!GO:0051236;establishment of RNA localization;3.77890044459361e-11!GO:0050658;RNA transport;3.77890044459361e-11!GO:0008026;ATP-dependent helicase activity;3.96798127012543e-11!GO:0006403;RNA localization;4.20691451407084e-11!GO:0006461;protein complex assembly;4.63827462462193e-11!GO:0008219;cell death;5.24273177428282e-11!GO:0016265;death;5.24273177428282e-11!GO:0006323;DNA packaging;7.11188420834292e-11!GO:0009259;ribonucleotide metabolic process;1.28207143680101e-10!GO:0006163;purine nucleotide metabolic process;1.41107459167181e-10!GO:0006446;regulation of translational initiation;1.70222147312644e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.34029757000095e-10!GO:0016881;acid-amino acid ligase activity;2.88467761173781e-10!GO:0009060;aerobic respiration;3.79092854797103e-10!GO:0015630;microtubule cytoskeleton;4.12046828665862e-10!GO:0046930;pore complex;4.63788012774385e-10!GO:0009056;catabolic process;5.06079376467683e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.72629557799271e-10!GO:0004812;aminoacyl-tRNA ligase activity;5.72629557799271e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.72629557799271e-10!GO:0043038;amino acid activation;6.46499277010185e-10!GO:0006418;tRNA aminoacylation for protein translation;6.46499277010185e-10!GO:0043039;tRNA aminoacylation;6.46499277010185e-10!GO:0006364;rRNA processing;9.081028391091e-10!GO:0008565;protein transporter activity;1.02209214609694e-09!GO:0006366;transcription from RNA polymerase II promoter;1.06280703642553e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.32473335407354e-09!GO:0006164;purine nucleotide biosynthetic process;1.44537068745599e-09!GO:0009150;purine ribonucleotide metabolic process;1.55844540095364e-09!GO:0000775;chromosome, pericentric region;1.63013137050785e-09!GO:0016740;transferase activity;1.81761196817487e-09!GO:0045333;cellular respiration;2.12472098264517e-09!GO:0016072;rRNA metabolic process;2.22780635063434e-09!GO:0009108;coenzyme biosynthetic process;2.22780635063434e-09!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.44392312362817e-09!GO:0051028;mRNA transport;2.5165964400513e-09!GO:0006261;DNA-dependent DNA replication;3.01147781778875e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.15551470790211e-09!GO:0009260;ribonucleotide biosynthetic process;4.80456504802355e-09!GO:0030532;small nuclear ribonucleoprotein complex;6.42220238667362e-09!GO:0007005;mitochondrion organization and biogenesis;6.82022962027719e-09!GO:0016607;nuclear speck;7.16327387554318e-09!GO:0003924;GTPase activity;7.16358809751721e-09!GO:0009141;nucleoside triphosphate metabolic process;8.79808230250931e-09!GO:0009199;ribonucleoside triphosphate metabolic process;1.11271667996139e-08!GO:0017038;protein import;1.24709158095934e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.60453463942849e-08!GO:0015986;ATP synthesis coupled proton transport;1.77495033759273e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.77495033759273e-08!GO:0065004;protein-DNA complex assembly;1.81547314545195e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.89357337369088e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.89357337369088e-08!GO:0016779;nucleotidyltransferase activity;1.93864397662502e-08!GO:0009117;nucleotide metabolic process;2.85115284899344e-08!GO:0006099;tricarboxylic acid cycle;3.36308647660599e-08!GO:0046356;acetyl-CoA catabolic process;3.36308647660599e-08!GO:0009142;nucleoside triphosphate biosynthetic process;3.65201425838169e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.65201425838169e-08!GO:0003712;transcription cofactor activity;3.83708688870467e-08!GO:0005819;spindle;4.05350421327359e-08!GO:0007051;spindle organization and biogenesis;4.06849943417849e-08!GO:0016787;hydrolase activity;4.36039363062738e-08!GO:0019829;cation-transporting ATPase activity;4.53317670272417e-08!GO:0000785;chromatin;4.54838117535333e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.57542416669724e-08!GO:0042981;regulation of apoptosis;4.57542416669724e-08!GO:0016568;chromatin modification;4.80379392411744e-08!GO:0043623;cellular protein complex assembly;4.8986317427609e-08!GO:0043067;regulation of programmed cell death;5.70929067298944e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;6.24898935333113e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;6.24898935333113e-08!GO:0015078;hydrogen ion transmembrane transporter activity;6.33899666164274e-08!GO:0032446;protein modification by small protein conjugation;7.21990312642367e-08!GO:0005768;endosome;7.98945884134291e-08!GO:0046034;ATP metabolic process;1.04151423397623e-07!GO:0006333;chromatin assembly or disassembly;1.09244181974752e-07!GO:0016567;protein ubiquitination;1.15020392241519e-07!GO:0051329;interphase of mitotic cell cycle;1.26675003556125e-07!GO:0051325;interphase;1.34725568397245e-07!GO:0006084;acetyl-CoA metabolic process;1.36709606168472e-07!GO:0000075;cell cycle checkpoint;2.00644209510925e-07!GO:0043566;structure-specific DNA binding;2.19967570462735e-07!GO:0045259;proton-transporting ATP synthase complex;2.2941672569581e-07!GO:0006754;ATP biosynthetic process;2.87368261700652e-07!GO:0006753;nucleoside phosphate metabolic process;2.87368261700652e-07!GO:0016469;proton-transporting two-sector ATPase complex;3.96985273316594e-07!GO:0009109;coenzyme catabolic process;4.27472953112555e-07!GO:0051187;cofactor catabolic process;4.27607924770406e-07!GO:0005839;proteasome core complex (sensu Eukaryota);4.31870418914645e-07!GO:0051246;regulation of protein metabolic process;4.84748253582781e-07!GO:0003697;single-stranded DNA binding;5.55305287958148e-07!GO:0000245;spliceosome assembly;5.98887093288842e-07!GO:0005813;centrosome;8.05207487200496e-07!GO:0005793;ER-Golgi intermediate compartment;9.10807964106555e-07!GO:0016491;oxidoreductase activity;9.23580338663631e-07!GO:0005525;GTP binding;9.55302537869102e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.16849425772942e-06!GO:0005815;microtubule organizing center;1.41879706613798e-06!GO:0005657;replication fork;1.42021367864123e-06!GO:0051170;nuclear import;1.86314881049424e-06!GO:0050794;regulation of cellular process;1.9111218382747e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.25710863083315e-06!GO:0005667;transcription factor complex;2.3551785611852e-06!GO:0048475;coated membrane;2.5363625085353e-06!GO:0030117;membrane coat;2.5363625085353e-06!GO:0043069;negative regulation of programmed cell death;2.58961003334363e-06!GO:0003724;RNA helicase activity;2.72550853500496e-06!GO:0006752;group transfer coenzyme metabolic process;2.99698462432241e-06!GO:0006613;cotranslational protein targeting to membrane;2.99698462432241e-06!GO:0006793;phosphorus metabolic process;3.13842300638271e-06!GO:0006796;phosphate metabolic process;3.13842300638271e-06!GO:0004298;threonine endopeptidase activity;3.20256871068299e-06!GO:0000151;ubiquitin ligase complex;3.27882284589846e-06!GO:0030120;vesicle coat;3.39090823504755e-06!GO:0030662;coated vesicle membrane;3.39090823504755e-06!GO:0006888;ER to Golgi vesicle-mediated transport;3.49797298989438e-06!GO:0006916;anti-apoptosis;3.79776049785333e-06!GO:0043066;negative regulation of apoptosis;4.08652349028575e-06!GO:0007010;cytoskeleton organization and biogenesis;4.50523866949716e-06!GO:0007088;regulation of mitosis;5.08602056812378e-06!GO:0008654;phospholipid biosynthetic process;5.78548851182709e-06!GO:0008094;DNA-dependent ATPase activity;6.17964902405022e-06!GO:0000776;kinetochore;6.43584165055586e-06!GO:0006606;protein import into nucleus;7.18278963043523e-06!GO:0003899;DNA-directed RNA polymerase activity;8.08206335803951e-06!GO:0044431;Golgi apparatus part;9.14097290200367e-06!GO:0031988;membrane-bound vesicle;1.04324035890069e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.04324035890069e-05!GO:0051427;hormone receptor binding;1.12514506991824e-05!GO:0016853;isomerase activity;1.27036764428895e-05!GO:0016023;cytoplasmic membrane-bound vesicle;1.47471616122715e-05!GO:0005762;mitochondrial large ribosomal subunit;1.6029688044481e-05!GO:0000315;organellar large ribosomal subunit;1.6029688044481e-05!GO:0006334;nucleosome assembly;1.68610211047357e-05!GO:0019843;rRNA binding;1.89931372800914e-05!GO:0008033;tRNA processing;2.02062012405331e-05!GO:0016310;phosphorylation;2.13760994501447e-05!GO:0015980;energy derivation by oxidation of organic compounds;2.25625799434434e-05!GO:0045454;cell redox homeostasis;2.35781938876595e-05!GO:0032561;guanyl ribonucleotide binding;2.42821691509492e-05!GO:0019001;guanyl nucleotide binding;2.42821691509492e-05!GO:0044440;endosomal part;2.45668667778042e-05!GO:0010008;endosome membrane;2.45668667778042e-05!GO:0005773;vacuole;2.45849151749032e-05!GO:0035257;nuclear hormone receptor binding;2.55171784789098e-05!GO:0005788;endoplasmic reticulum lumen;3.15773488728911e-05!GO:0000314;organellar small ribosomal subunit;3.43258006329657e-05!GO:0005763;mitochondrial small ribosomal subunit;3.43258006329657e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;3.45587678254068e-05!GO:0048523;negative regulation of cellular process;3.59021641284112e-05!GO:0031497;chromatin assembly;4.04136509812621e-05!GO:0000079;regulation of cyclin-dependent protein kinase activity;4.18457384873825e-05!GO:0005770;late endosome;4.26462749824444e-05!GO:0031982;vesicle;4.84923056929922e-05!GO:0045786;negative regulation of progression through cell cycle;5.00651638114199e-05!GO:0000323;lytic vacuole;5.02218495633254e-05!GO:0005764;lysosome;5.02218495633254e-05!GO:0019899;enzyme binding;5.48344751600913e-05!GO:0043021;ribonucleoprotein binding;5.62926808983429e-05!GO:0051052;regulation of DNA metabolic process;6.10240286614646e-05!GO:0051168;nuclear export;6.42135916384304e-05!GO:0008186;RNA-dependent ATPase activity;6.90938678458211e-05!GO:0007059;chromosome segregation;7.28965958366674e-05!GO:0016563;transcription activator activity;7.53306766702162e-05!GO:0006302;double-strand break repair;7.65636747445944e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;7.76218064308639e-05!GO:0031410;cytoplasmic vesicle;7.81905191017389e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;8.5661614274059e-05!GO:0050662;coenzyme binding;9.11917719471504e-05!GO:0006091;generation of precursor metabolites and energy;9.20356192584128e-05!GO:0000139;Golgi membrane;9.7110471973178e-05!GO:0048471;perinuclear region of cytoplasm;9.97995218105574e-05!GO:0003713;transcription coactivator activity;0.000103821996019877!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000105845504616757!GO:0046489;phosphoinositide biosynthetic process;0.000106347128809227!GO:0005874;microtubule;0.000107155621197792!GO:0006414;translational elongation;0.000107834789476229!GO:0046474;glycerophospholipid biosynthetic process;0.000118197249667164!GO:0030867;rough endoplasmic reticulum membrane;0.000126218629075207!GO:0005048;signal sequence binding;0.000130937550383462!GO:0031324;negative regulation of cellular metabolic process;0.000139088186717045!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000150287005192022!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000150553821039208!GO:0016363;nuclear matrix;0.000150579977410667!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000159035692698133!GO:0015399;primary active transmembrane transporter activity;0.000159035692698133!GO:0007093;mitotic cell cycle checkpoint;0.000163373444148756!GO:0016741;transferase activity, transferring one-carbon groups;0.000186078882211412!GO:0019752;carboxylic acid metabolic process;0.000201107500060671!GO:0004004;ATP-dependent RNA helicase activity;0.000213684884573206!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000215224194643136!GO:0008168;methyltransferase activity;0.000236331423645043!GO:0006612;protein targeting to membrane;0.000236331423645043!GO:0007017;microtubule-based process;0.000236331423645043!GO:0006082;organic acid metabolic process;0.00023683183015871!GO:0007052;mitotic spindle organization and biogenesis;0.00027141056075306!GO:0009892;negative regulation of metabolic process;0.000273721665082438!GO:0005798;Golgi-associated vesicle;0.000280318593351697!GO:0030036;actin cytoskeleton organization and biogenesis;0.000302379915625274!GO:0043681;protein import into mitochondrion;0.000302448931702324!GO:0008250;oligosaccharyl transferase complex;0.000305553574125015!GO:0006383;transcription from RNA polymerase III promoter;0.000325863644052485!GO:0042802;identical protein binding;0.000361547799781528!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000364216406163891!GO:0003690;double-stranded DNA binding;0.000375887867878438!GO:0048519;negative regulation of biological process;0.000377425063539689!GO:0006275;regulation of DNA replication;0.000378651847838184!GO:0046467;membrane lipid biosynthetic process;0.00038056722830913!GO:0016126;sterol biosynthetic process;0.000409701562568718!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00041196565666541!GO:0006839;mitochondrial transport;0.000417825039661972!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000424932149559315!GO:0018196;peptidyl-asparagine modification;0.000432379605352981!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000432379605352981!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000434141736084536!GO:0006626;protein targeting to mitochondrion;0.000448869608946523!GO:0016859;cis-trans isomerase activity;0.000458525594489032!GO:0003746;translation elongation factor activity;0.000478873606267116!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000481863468048587!GO:0004576;oligosaccharyl transferase activity;0.00048256934580448!GO:0003684;damaged DNA binding;0.00050748131129403!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000543730376798035!GO:0009165;nucleotide biosynthetic process;0.000543730376798035!GO:0031252;leading edge;0.000545444078947242!GO:0005769;early endosome;0.000574718991348519!GO:0003678;DNA helicase activity;0.000582572169239975!GO:0016044;membrane organization and biogenesis;0.0005839173712292!GO:0000082;G1/S transition of mitotic cell cycle;0.000593862348660797!GO:0009116;nucleoside metabolic process;0.000604636380735196!GO:0000059;protein import into nucleus, docking;0.000673225728577627!GO:0006310;DNA recombination;0.00068161792476578!GO:0005885;Arp2/3 protein complex;0.000681909008394976!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.000698146002899276!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.000698146002899276!GO:0016564;transcription repressor activity;0.000709904567145917!GO:0046483;heterocycle metabolic process;0.000720870710992572!GO:0005684;U2-dependent spliceosome;0.000785619653639016!GO:0003729;mRNA binding;0.000788933967913363!GO:0015992;proton transport;0.000788933967913363!GO:0031968;organelle outer membrane;0.000812056628169578!GO:0044452;nucleolar part;0.000820652118832503!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000829277218233914!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000829277218233914!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000829277218233914!GO:0048500;signal recognition particle;0.000830483272998746!GO:0051252;regulation of RNA metabolic process;0.000836080860374105!GO:0006352;transcription initiation;0.000836080860374105!GO:0051920;peroxiredoxin activity;0.000836582956695209!GO:0019867;outer membrane;0.000836582956695209!GO:0019222;regulation of metabolic process;0.000836582956695209!GO:0006520;amino acid metabolic process;0.000864747999892621!GO:0031970;organelle envelope lumen;0.000899745229497442!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000911951185865082!GO:0006818;hydrogen transport;0.000933914735647277!GO:0007264;small GTPase mediated signal transduction;0.00101286248445859!GO:0003714;transcription corepressor activity;0.00101508666580363!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0010750768489585!GO:0006695;cholesterol biosynthetic process;0.00109476005388347!GO:0008361;regulation of cell size;0.00114697711892432!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00116247703755193!GO:0051087;chaperone binding;0.00120040996928791!GO:0048037;cofactor binding;0.00126075030997741!GO:0033116;ER-Golgi intermediate compartment membrane;0.00126324456539072!GO:0000049;tRNA binding;0.00129181585981946!GO:0008312;7S RNA binding;0.00129181585981946!GO:0005637;nuclear inner membrane;0.00130264428864695!GO:0005905;coated pit;0.00130266712345579!GO:0004674;protein serine/threonine kinase activity;0.00133979449053222!GO:0006402;mRNA catabolic process;0.00135316782377321!GO:0008610;lipid biosynthetic process;0.00135427428830033!GO:0043492;ATPase activity, coupled to movement of substances;0.00138210006053339!GO:0051789;response to protein stimulus;0.00138416699528098!GO:0006986;response to unfolded protein;0.00138416699528098!GO:0051287;NAD binding;0.00143418730691175!GO:0000096;sulfur amino acid metabolic process;0.00143427235592999!GO:0050789;regulation of biological process;0.00143525291943056!GO:0031072;heat shock protein binding;0.00144865496995903!GO:0003682;chromatin binding;0.00156773571192664!GO:0003711;transcription elongation regulator activity;0.00156773571192664!GO:0032508;DNA duplex unwinding;0.00158199800909089!GO:0032392;DNA geometric change;0.00158199800909089!GO:0030176;integral to endoplasmic reticulum membrane;0.00163587863768601!GO:0006506;GPI anchor biosynthetic process;0.0016627489358171!GO:0005791;rough endoplasmic reticulum;0.00171367806083697!GO:0007006;mitochondrial membrane organization and biogenesis;0.00172134459979063!GO:0005741;mitochondrial outer membrane;0.00172134459979063!GO:0016251;general RNA polymerase II transcription factor activity;0.00174446114569018!GO:0006891;intra-Golgi vesicle-mediated transport;0.00180830718748538!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00202423252220622!GO:0045047;protein targeting to ER;0.00202423252220622!GO:0004527;exonuclease activity;0.00203487467351245!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00205392952281343!GO:0007243;protein kinase cascade;0.00207337990243309!GO:0001558;regulation of cell growth;0.00207337990243309!GO:0006672;ceramide metabolic process;0.00219942010129407!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00223231282140583!GO:0000910;cytokinesis;0.00224033527441697!GO:0065009;regulation of a molecular function;0.00224986718803313!GO:0006497;protein amino acid lipidation;0.00247799274587331!GO:0016272;prefoldin complex;0.00248101826198797!GO:0043065;positive regulation of apoptosis;0.00251180423052705!GO:0009119;ribonucleoside metabolic process;0.00252539511668042!GO:0006401;RNA catabolic process;0.00260198521289249!GO:0005876;spindle microtubule;0.00260972980838905!GO:0016049;cell growth;0.00260972980838905!GO:0043284;biopolymer biosynthetic process;0.00266586668244161!GO:0030029;actin filament-based process;0.0026966373873859!GO:0008092;cytoskeletal protein binding;0.0026966373873859!GO:0006505;GPI anchor metabolic process;0.00285844471894669!GO:0045045;secretory pathway;0.00286073568636993!GO:0043488;regulation of mRNA stability;0.00287523885475435!GO:0043487;regulation of RNA stability;0.00287523885475435!GO:0030384;phosphoinositide metabolic process;0.00290474254333728!GO:0016197;endosome transport;0.00291434301642907!GO:0006268;DNA unwinding during replication;0.00291732863681929!GO:0051540;metal cluster binding;0.00291732863681929!GO:0051536;iron-sulfur cluster binding;0.00291732863681929!GO:0030663;COPI coated vesicle membrane;0.00292097551491464!GO:0030126;COPI vesicle coat;0.00292097551491464!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00292097551491464!GO:0008139;nuclear localization sequence binding;0.00300028324438125!GO:0042393;histone binding;0.00304581922668232!GO:0006284;base-excision repair;0.00314924709117679!GO:0009112;nucleobase metabolic process;0.00317828971431128!GO:0044262;cellular carbohydrate metabolic process;0.00320027495273336!GO:0000922;spindle pole;0.00328806436080137!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00334926471057081!GO:0015631;tubulin binding;0.00345694006757196!GO:0046519;sphingoid metabolic process;0.00348397040493797!GO:0043068;positive regulation of programmed cell death;0.00357818718425576!GO:0006289;nucleotide-excision repair;0.00366371700111583!GO:0005758;mitochondrial intermembrane space;0.00372924241304717!GO:0006650;glycerophospholipid metabolic process;0.00385975488183758!GO:0000086;G2/M transition of mitotic cell cycle;0.00385975488183758!GO:0006405;RNA export from nucleus;0.00389820965403646!GO:0051101;regulation of DNA binding;0.00422266642440978!GO:0043596;nuclear replication fork;0.00428945561255017!GO:0007050;cell cycle arrest;0.00445882963152953!GO:0022890;inorganic cation transmembrane transporter activity;0.00451647631014515!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0045203194336251!GO:0006144;purine base metabolic process;0.00496483843936643!GO:0030880;RNA polymerase complex;0.00512874925537147!GO:0008234;cysteine-type peptidase activity;0.00516151303791303!GO:0006733;oxidoreduction coenzyme metabolic process;0.00524604908960084!GO:0032259;methylation;0.00526920613949225!GO:0042158;lipoprotein biosynthetic process;0.00527266985771061!GO:0031124;mRNA 3'-end processing;0.00530460608780282!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00539628766321301!GO:0015002;heme-copper terminal oxidase activity;0.00539628766321301!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00539628766321301!GO:0004129;cytochrome-c oxidase activity;0.00539628766321301!GO:0030132;clathrin coat of coated pit;0.00539628766321301!GO:0030137;COPI-coated vesicle;0.0056752214640163!GO:0017166;vinculin binding;0.00581795877497285!GO:0004518;nuclease activity;0.00585572879227934!GO:0031902;late endosome membrane;0.00589784482740582!GO:0008022;protein C-terminus binding;0.00609366232858557!GO:0043022;ribosome binding;0.00617316904939336!GO:0032984;macromolecular complex disassembly;0.00643706421505065!GO:0030118;clathrin coat;0.00661302736305473!GO:0006950;response to stress;0.00661302736305473!GO:0031570;DNA integrity checkpoint;0.00664150241347477!GO:0006509;membrane protein ectodomain proteolysis;0.00669087825860825!GO:0033619;membrane protein proteolysis;0.00669087825860825!GO:0035258;steroid hormone receptor binding;0.00683646680775354!GO:0000287;magnesium ion binding;0.00702081755533516!GO:0042770;DNA damage response, signal transduction;0.00704846413077977!GO:0006338;chromatin remodeling;0.00710419169735868!GO:0043624;cellular protein complex disassembly;0.00728322499468279!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00730897089143156!GO:0000228;nuclear chromosome;0.00732839250334229!GO:0051098;regulation of binding;0.00733163359597755!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00739112401388798!GO:0048487;beta-tubulin binding;0.00756532349299274!GO:0009451;RNA modification;0.00778757874611244!GO:0000786;nucleosome;0.00790075835943129!GO:0030133;transport vesicle;0.00814557806354624!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.00819548348800949!GO:0006611;protein export from nucleus;0.00826859002295554!GO:0030521;androgen receptor signaling pathway;0.00833701031946775!GO:0046128;purine ribonucleoside metabolic process;0.0085566612140988!GO:0042278;purine nucleoside metabolic process;0.0085566612140988!GO:0000070;mitotic sister chromatid segregation;0.00863799074435532!GO:0005832;chaperonin-containing T-complex;0.00874027007627405!GO:0043241;protein complex disassembly;0.00874027007627405!GO:0016481;negative regulation of transcription;0.00882352327972248!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0089793981939215!GO:0019783;small conjugating protein-specific protease activity;0.009184816604497!GO:0016407;acetyltransferase activity;0.00933050685894903!GO:0006767;water-soluble vitamin metabolic process;0.00933050685894903!GO:0000819;sister chromatid segregation;0.00944870302908408!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00955225262294249!GO:0000428;DNA-directed RNA polymerase complex;0.00955225262294249!GO:0008632;apoptotic program;0.00959157465223085!GO:0006749;glutathione metabolic process;0.00968988169651836!GO:0000339;RNA cap binding;0.0102929869585417!GO:0006519;amino acid and derivative metabolic process;0.0103054200233025!GO:0006892;post-Golgi vesicle-mediated transport;0.0104015013826903!GO:0008652;amino acid biosynthetic process;0.0106211086050074!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0107976749654043!GO:0005869;dynactin complex;0.010801318129141!GO:0022406;membrane docking;0.010812646845024!GO:0048278;vesicle docking;0.010812646845024!GO:0006595;polyamine metabolic process;0.0111550724423969!GO:0004843;ubiquitin-specific protease activity;0.0113085198047789!GO:0048522;positive regulation of cellular process;0.011419976990713!GO:0008180;signalosome;0.0119122115027929!GO:0006740;NADPH regeneration;0.012283110489989!GO:0006098;pentose-phosphate shunt;0.012283110489989!GO:0006007;glucose catabolic process;0.0125994690534992!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0126312099010684!GO:0046966;thyroid hormone receptor binding;0.0126954438011438!GO:0016790;thiolester hydrolase activity;0.0129408187981028!GO:0008629;induction of apoptosis by intracellular signals;0.0130501787462656!GO:0008408;3'-5' exonuclease activity;0.0130944009049097!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0130944009049097!GO:0055083;monovalent inorganic anion homeostasis;0.0130944009049097!GO:0055064;chloride ion homeostasis;0.0130944009049097!GO:0030644;cellular chloride ion homeostasis;0.0130944009049097!GO:0051539;4 iron, 4 sulfur cluster binding;0.0133853166340344!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0134482234483949!GO:0016791;phosphoric monoester hydrolase activity;0.0138235221056297!GO:0004680;casein kinase activity;0.0138751587998728!GO:0004532;exoribonuclease activity;0.0138751587998728!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0138751587998728!GO:0009303;rRNA transcription;0.0141319732691997!GO:0046822;regulation of nucleocytoplasmic transport;0.014277674121658!GO:0006778;porphyrin metabolic process;0.0143978367154203!GO:0033013;tetrapyrrole metabolic process;0.0143978367154203!GO:0043414;biopolymer methylation;0.0144044832700835!GO:0046983;protein dimerization activity;0.0145268964312232!GO:0032200;telomere organization and biogenesis;0.0147720320320788!GO:0000723;telomere maintenance;0.0147720320320788!GO:0030658;transport vesicle membrane;0.01538215778979!GO:0000077;DNA damage checkpoint;0.0154277300113768!GO:0008637;apoptotic mitochondrial changes;0.0160507580189924!GO:0043601;nuclear replisome;0.0160945766450996!GO:0030894;replisome;0.0160945766450996!GO:0006378;mRNA polyadenylation;0.0165660082401842!GO:0030027;lamellipodium;0.0165887460343649!GO:0031577;spindle checkpoint;0.0165947759973437!GO:0046982;protein heterodimerization activity;0.0166967131062571!GO:0040008;regulation of growth;0.0170309581424678!GO:0006904;vesicle docking during exocytosis;0.017110413829583!GO:0006400;tRNA modification;0.017675353882635!GO:0004003;ATP-dependent DNA helicase activity;0.0177092836115718!GO:0031123;RNA 3'-end processing;0.0178214964912382!GO:0045792;negative regulation of cell size;0.0178400448294904!GO:0019318;hexose metabolic process;0.017900086141106!GO:0004221;ubiquitin thiolesterase activity;0.0181230220845167!GO:0005996;monosaccharide metabolic process;0.0181460267577411!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0183346343843559!GO:0007034;vacuolar transport;0.018696372326063!GO:0009081;branched chain family amino acid metabolic process;0.0187152175240312!GO:0005669;transcription factor TFIID complex;0.0188516523441102!GO:0000152;nuclear ubiquitin ligase complex;0.0189506051946228!GO:0043189;H4/H2A histone acetyltransferase complex;0.0190298710006717!GO:0031625;ubiquitin protein ligase binding;0.0191525731934503!GO:0031529;ruffle organization and biogenesis;0.0193111942238257!GO:0005663;DNA replication factor C complex;0.0194154327296364!GO:0003955;NAD(P)H dehydrogenase (quinone) activity;0.0196862413604495!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0199594138725856!GO:0006270;DNA replication initiation;0.0200233857992193!GO:0043433;negative regulation of transcription factor activity;0.0205223115516813!GO:0000178;exosome (RNase complex);0.0209704827959791!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0210508384100571!GO:0007021;tubulin folding;0.0210851750512503!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0210949927868091!GO:0008287;protein serine/threonine phosphatase complex;0.0214567173295078!GO:0030308;negative regulation of cell growth;0.0218276476680808!GO:0008017;microtubule binding;0.0220297271348648!GO:0000725;recombinational repair;0.0220297271348648!GO:0000724;double-strand break repair via homologous recombination;0.0220297271348648!GO:0006779;porphyrin biosynthetic process;0.0230008986285617!GO:0033014;tetrapyrrole biosynthetic process;0.0230008986285617!GO:0051053;negative regulation of DNA metabolic process;0.023207563896748!GO:0031323;regulation of cellular metabolic process;0.0233410937834471!GO:0051338;regulation of transferase activity;0.0233859304253103!GO:0051128;regulation of cellular component organization and biogenesis;0.0235218435452996!GO:0006360;transcription from RNA polymerase I promoter;0.0237456253376834!GO:0000209;protein polyubiquitination;0.0240198332071057!GO:0006730;one-carbon compound metabolic process;0.0240497267874684!GO:0043154;negative regulation of caspase activity;0.0244803228051793!GO:0030119;AP-type membrane coat adaptor complex;0.0248748714406101!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0255690424663092!GO:0006979;response to oxidative stress;0.0255726588527769!GO:0006376;mRNA splice site selection;0.0256348705333437!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0256348705333437!GO:0042168;heme metabolic process;0.0257347098601558!GO:0007346;regulation of progression through mitotic cell cycle;0.0259141364495409!GO:0030660;Golgi-associated vesicle membrane;0.0259141364495409!GO:0006417;regulation of translation;0.0260277288460913!GO:0030496;midbody;0.0265864527375141!GO:0032507;maintenance of cellular protein localization;0.0271271827353009!GO:0030659;cytoplasmic vesicle membrane;0.0273076481546834!GO:0016301;kinase activity;0.0274334140564517!GO:0003923;GPI-anchor transamidase activity;0.02765924618392!GO:0016255;attachment of GPI anchor to protein;0.02765924618392!GO:0042765;GPI-anchor transamidase complex;0.02765924618392!GO:0008538;proteasome activator activity;0.0278324234516111!GO:0030134;ER to Golgi transport vesicle;0.028269902190414!GO:0006354;RNA elongation;0.0293459854305915!GO:0003702;RNA polymerase II transcription factor activity;0.0300400812934234!GO:0006769;nicotinamide metabolic process;0.0310013835114452!GO:0004300;enoyl-CoA hydratase activity;0.0310128175346774!GO:0030503;regulation of cell redox homeostasis;0.0310128175346774!GO:0050790;regulation of catalytic activity;0.0311030995401338!GO:0006643;membrane lipid metabolic process;0.0312086747865971!GO:0022411;cellular component disassembly;0.0314894458150868!GO:0040029;regulation of gene expression, epigenetic;0.0317907968329208!GO:0000097;sulfur amino acid biosynthetic process;0.0319520730348762!GO:0035267;NuA4 histone acetyltransferase complex;0.0321887877029269!GO:0051059;NF-kappaB binding;0.0324329958337899!GO:0042026;protein refolding;0.0328637525150051!GO:0044450;microtubule organizing center part;0.0329313117052425!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0329985666412001!GO:0019377;glycolipid catabolic process;0.0335727756878438!GO:0030131;clathrin adaptor complex;0.0336994552052278!GO:0043549;regulation of kinase activity;0.0340941019576083!GO:0030125;clathrin vesicle coat;0.0342017782174628!GO:0030665;clathrin coated vesicle membrane;0.0342017782174628!GO:0005774;vacuolar membrane;0.0342017782174628!GO:0016584;nucleosome positioning;0.0342017782174628!GO:0047485;protein N-terminus binding;0.034522962076738!GO:0033673;negative regulation of kinase activity;0.0347013000261781!GO:0006469;negative regulation of protein kinase activity;0.0347013000261781!GO:0044454;nuclear chromosome part;0.0350669763151708!GO:0006739;NADP metabolic process;0.0351009487577772!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0351472420676643!GO:0001726;ruffle;0.0352038947788219!GO:0007040;lysosome organization and biogenesis;0.0359876245826848!GO:0000792;heterochromatin;0.0360815593439001!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0363932207896023!GO:0022415;viral reproductive process;0.0364846110496443!GO:0006066;alcohol metabolic process;0.0367283795105738!GO:0005680;anaphase-promoting complex;0.0367317682050264!GO:0005784;translocon complex;0.0368321161678857!GO:0043094;metabolic compound salvage;0.0368790126723141!GO:0012506;vesicle membrane;0.037581707016741!GO:0007030;Golgi organization and biogenesis;0.0376147058815155!GO:0008426;protein kinase C inhibitor activity;0.0379086225499155!GO:0033559;unsaturated fatty acid metabolic process;0.0379974723187207!GO:0006636;unsaturated fatty acid biosynthetic process;0.0379974723187207!GO:0009124;nucleoside monophosphate biosynthetic process;0.0380997448827156!GO:0009123;nucleoside monophosphate metabolic process;0.0380997448827156!GO:0051348;negative regulation of transferase activity;0.0386165343628516!GO:0048146;positive regulation of fibroblast proliferation;0.0397470233820908!GO:0030518;steroid hormone receptor signaling pathway;0.0401017701159646!GO:0043130;ubiquitin binding;0.0404200863859344!GO:0032182;small conjugating protein binding;0.0404200863859344!GO:0016615;malate dehydrogenase activity;0.0405150466315329!GO:0030127;COPII vesicle coat;0.040542229657651!GO:0012507;ER to Golgi transport vesicle membrane;0.040542229657651!GO:0006783;heme biosynthetic process;0.0412113399264454!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0413711244763775!GO:0010257;NADH dehydrogenase complex assembly;0.0413711244763775!GO:0033108;mitochondrial respiratory chain complex assembly;0.0413711244763775!GO:0008320;protein transmembrane transporter activity;0.041406060416441!GO:0006984;ER-nuclear signaling pathway;0.0414895854225678!GO:0019206;nucleoside kinase activity;0.0414895854225678!GO:0019362;pyridine nucleotide metabolic process;0.0414943899259938!GO:0044433;cytoplasmic vesicle part;0.0421515564071427!GO:0000781;chromosome, telomeric region;0.0425441997800215!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0425441997800215!GO:0050681;androgen receptor binding;0.0427748195179636!GO:0032039;integrator complex;0.04344738404683!GO:0017134;fibroblast growth factor binding;0.0435649046933988!GO:0004523;ribonuclease H activity;0.0435649046933988!GO:0008601;protein phosphatase type 2A regulator activity;0.0435649046933988!GO:0042364;water-soluble vitamin biosynthetic process;0.0435649046933988!GO:0043174;nucleoside salvage;0.0436403957467675!GO:0006166;purine ribonucleoside salvage;0.0436403957467675!GO:0043101;purine salvage;0.0436403957467675!GO:0000123;histone acetyltransferase complex;0.0438213551276285!GO:0000030;mannosyltransferase activity;0.044653900381517!GO:0006665;sphingolipid metabolic process;0.044653900381517!GO:0000159;protein phosphatase type 2A complex;0.0448141007866966!GO:0006541;glutamine metabolic process;0.0449580137572209!GO:0000305;response to oxygen radical;0.0449580137572209!GO:0008276;protein methyltransferase activity;0.0450043938563581!GO:0000175;3'-5'-exoribonuclease activity;0.0450043938563581!GO:0032153;cell division site;0.0451973984022517!GO:0032155;cell division site part;0.0451973984022517!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0454594280634436!GO:0008097;5S rRNA binding;0.0456379167157299!GO:0005856;cytoskeleton;0.0456872724297517!GO:0007041;lysosomal transport;0.0457288000449932!GO:0045893;positive regulation of transcription, DNA-dependent;0.0461634203224653!GO:0003985;acetyl-CoA C-acetyltransferase activity;0.0461634203224653!GO:0000726;non-recombinational repair;0.0464645480690679!GO:0045926;negative regulation of growth;0.0465714179314244!GO:0022884;macromolecule transmembrane transporter activity;0.0466767507199462!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0466767507199462!GO:0006897;endocytosis;0.0476284552525599!GO:0010324;membrane invagination;0.0476284552525599!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.0486330202514312!GO:0005765;lysosomal membrane;0.0486574644076762!GO:0001666;response to hypoxia;0.0486649099039253!GO:0004748;ribonucleoside-diphosphate reductase activity;0.0486649099039253!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.0486649099039253!GO:0001836;release of cytochrome c from mitochondria;0.0486905217933075!GO:0030911;TPR domain binding;0.0486905217933075!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0487280446635373!GO:0006118;electron transport;0.0488733252095872!GO:0006458;'de novo' protein folding;0.0498739621267511!GO:0051084;'de novo' posttranslational protein folding;0.0498739621267511
|sample_id=10490
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=prostate
|top_motifs=NFY{A,B,C}:1.24313920614;PITX1..3:1.2244178812;NKX6-1,2:1.15012476915;ELK1,4_GABP{A,B1}:1.11863819333;E2F1..5:1.11404411183;NRF1:1.09024138291;NKX2-1,4:0.979551183366;LMO2:0.961543763012;MYB:0.917046792091;SNAI1..3:0.903841051238;FOX{I1,J2}:0.802827326259;ZNF143:0.773771010313;ZEB1:0.766543216871;POU1F1:0.761182365086;SP1:0.753172934619;FOXQ1:0.74751109289;bHLH_family:0.707143777683;HOX{A4,D4}:0.626519342621;YY1:0.587812031415;AIRE:0.582775743307;TFDP1:0.581561306467;NFE2L2:0.574123225123;CRX:0.554608347317;MYOD1:0.54787152917;HOX{A5,B5}:0.535895504767;LHX3,4:0.518471043272;NKX3-1:0.512135912796;ESRRA:0.500505713363;TEF:0.492242962348;VSX1,2:0.48934666544;PBX1:0.47970088629;NKX2-2,8:0.471763209586;XCPE1{core}:0.453480664582;TEAD1:0.450371987865;STAT1,3:0.422341356003;ZBTB16:0.394971400182;NFE2:0.337288376113;NR6A1:0.326577177719;PPARG:0.281230342894;NKX2-3_NKX2-5:0.268844093449;STAT5{A,B}:0.240740451633;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.237954896906;HNF1A:0.226947915467;FOXD3:0.22365819669;PDX1:0.199754605949;ZIC1..3:0.188468512295;ZFP161:0.173196014137;HOX{A6,A7,B6,B7}:0.159090789585;RBPJ:0.152057621891;STAT2,4,6:0.125430678823;TFAP2B:0.117244280007;BACH2:0.112533066093;IKZF2:0.111843647635;HSF1,2:0.105624054838;CDC5L:0.0721476272947;FOSL2:0.0598767114836;POU5F1:0.0549942102613;FOS_FOS{B,L1}_JUN{B,D}:0.0517098278296;PAX1,9:0.0398123290088;ZNF423:0.0350077231141;FOXM1:0.0334267723222;FOXP1:0.0324555329021;CEBPA,B_DDIT3:0.0192309733756;CDX1,2,4:0.0189677667308;NFE2L1:0.0149839694944;HES1:0.00405959123306;TP53:-0.00303370920877;HIF1A:-0.00588988248895;ONECUT1,2:-0.00862859025691;EVI1:-0.0286064676692;GFI1:-0.0312479010994;UFEwm:-0.0379536233992;CREB1:-0.0404842166249;RFX2..5_RFXANK_RFXAP:-0.0431272882619;NANOG:-0.0464245328931;MTF1:-0.0581534638715;AHR_ARNT_ARNT2:-0.0598514905364;PRRX1,2:-0.0632255185996;POU2F1..3:-0.0843785293818;ARID5B:-0.0891722590717;ATF5_CREB3:-0.0891870663536;RXR{A,B,G}:-0.0920900009165;NKX3-2:-0.0948930194757;PAX5:-0.0988609287632;EN1,2:-0.110999819106;BREu{core}:-0.126203979483;ALX4:-0.12910119868;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.129401221344;OCT4_SOX2{dimer}:-0.14934038231;ZBTB6:-0.168958214482;TLX2:-0.171982462743;PAX8:-0.180869696102;FOXL1:-0.181514616052;ADNP_IRX_SIX_ZHX:-0.182567290837;NR5A1,2:-0.187866790458;NFKB1_REL_RELA:-0.193231849797;ZNF384:-0.195075277107;SOX17:-0.207181141255;HNF4A_NR2F1,2:-0.208154735812;HBP1_HMGB_SSRP1_UBTF:-0.208326577219;FOXN1:-0.211065979626;HLF:-0.229067299057;RREB1:-0.229840340129;GATA6:-0.237467681096;RFX1:-0.243644676522;ATF4:-0.251150299617;RORA:-0.254092848075;TAL1_TCF{3,4,12}:-0.259494152699;FOX{F1,F2,J1}:-0.267599107798;TBX4,5:-0.283933505311;ESR1:-0.286272408046;CUX2:-0.293154369729;ZNF148:-0.293282799465;PAX2:-0.295927374886;ELF1,2,4:-0.302232683545;REST:-0.302505551896;EGR1..3:-0.304642073226;PAX6:-0.30638642352;GFI1B:-0.307378471989;MYBL2:-0.309119374585;HIC1:-0.334576656493;EBF1:-0.348541363283;DBP:-0.348888115121;TFAP2{A,C}:-0.364293769726;DMAP1_NCOR{1,2}_SMARC:-0.367269499327;MEF2{A,B,C,D}:-0.375342133661;IRF7:-0.384686604004;IKZF1:-0.388394388737;HOXA9_MEIS1:-0.407258900937;SOX{8,9,10}:-0.418415315046;RXRA_VDR{dimer}:-0.431179064426;TOPORS:-0.442083235954;FOXP3:-0.461609693643;PAX4:-0.468318757342;GCM1,2:-0.473416327048;LEF1_TCF7_TCF7L1,2:-0.483954608073;FOX{D1,D2}:-0.489846578036;PAX3,7:-0.496328349012;FOXO1,3,4:-0.506580348184;TBP:-0.508267605943;SPIB:-0.509647433196;GTF2A1,2:-0.522161465768;GZF1:-0.523785330088;RUNX1..3:-0.524697265994;HMGA1,2:-0.538698377874;NR3C1:-0.558212715763;JUN:-0.558246197568;TFCP2:-0.559701154968;PATZ1:-0.583512455175;IRF1,2:-0.600779133596;SREBF1,2:-0.601855902925;EP300:-0.608701889743;TLX1..3_NFIC{dimer}:-0.611295294694;SOX2:-0.616983021142;HAND1,2:-0.620103418399;ETS1,2:-0.630677723512;POU6F1:-0.634674501764;KLF4:-0.641410205299;GTF2I:-0.645872908904;POU3F1..4:-0.650291210277;ALX1:-0.656426516253;SOX5:-0.657382816546;MED-1{core}:-0.66973573583;NR1H4:-0.672286826102;FOXA2:-0.675363743652;SPI1:-0.681339839354;SRF:-0.699307133061;GLI1..3:-0.711627720267;MTE{core}:-0.734848913338;MAZ:-0.761599352676;NFIL3:-0.764265668479;ATF2:-0.792390664542;SPZ1:-0.844792854197;PRDM1:-0.853439889675;MYFfamily:-0.869970003328;AR:-0.898341614575;GATA4:-0.939443973701;NFIX:-0.94859307924;T:-0.98829855416;MAFB:-0.993218300344;XBP1:-1.0910329479;NANOG{mouse}:-1.1092110162;BPTF:-1.10925666914;ATF6:-1.16176368588;MZF1:-1.18514120762;NHLH1,2:-1.19709838935;TGIF1:-1.25627854433;NFATC1..3:-1.37012709718;TFAP4:-1.37926634017;ZNF238:-1.54008459195;HMX1:-2.25497905463;SMAD1..7,9:-2.61273413308
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10490-107B4;search_select_hide=table117:FF:10490-107B4
}}
}}

Latest revision as of 14:27, 3 June 2020

Name:prostate cancer cell line:DU145
Species:Human (Homo sapiens)
Library ID:CNhs11260
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueprostate
dev stageNA
sexmale
age69
cell typeunclassifiable
cell lineDU145
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005339
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11260 CAGE DRX007987 DRR008859
Accession ID Hg19

Library idBAMCTSS
CNhs11260 DRZ000284 DRZ001669
Accession ID Hg38

Library idBAMCTSS
CNhs11260 DRZ011634 DRZ013019
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.104
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.543
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0.0485
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral2.950206e-4
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.104
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.319
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.124
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.085
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.168
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.132
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory-0.00418
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0163
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0399
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.496
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0485
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.0485
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11260

Jaspar motifP-value
MA0002.20.0102
MA0003.10.957
MA0004.10.658
MA0006.10.868
MA0007.10.813
MA0009.10.247
MA0014.10.0549
MA0017.10.41
MA0018.20.696
MA0019.10.761
MA0024.15.52591e-5
MA0025.10.969
MA0027.10.713
MA0028.11.95225e-4
MA0029.10.522
MA0030.10.109
MA0031.10.776
MA0035.20.475
MA0038.10.018
MA0039.25.31853e-4
MA0040.10.417
MA0041.10.307
MA0042.10.266
MA0043.10.4
MA0046.10.00219
MA0047.20.808
MA0048.10.153
MA0050.10.00539
MA0051.10.562
MA0052.10.0285
MA0055.11.42046e-4
MA0057.10.5
MA0058.10.637
MA0059.10.621
MA0060.11.0596e-7
MA0061.10.0136
MA0062.27.94371e-4
MA0065.20.311
MA0066.10.303
MA0067.10.827
MA0068.10.00307
MA0069.10.535
MA0070.10.921
MA0071.10.634
MA0072.10.857
MA0073.10.942
MA0074.10.874
MA0076.14.45766e-4
MA0077.10.918
MA0078.10.322
MA0079.20.723
MA0080.22.42967e-9
MA0081.10.54
MA0083.10.0737
MA0084.10.262
MA0087.10.243
MA0088.10.217
MA0090.10.363
MA0091.15.13137e-4
MA0092.10.159
MA0093.10.764
MA0099.20.312
MA0100.10.188
MA0101.10.504
MA0102.20.584
MA0103.10.00208
MA0104.20.316
MA0105.11.3659e-4
MA0106.10.731
MA0107.10.165
MA0108.20.0754
MA0111.10.684
MA0112.20.211
MA0113.10.0689
MA0114.10.425
MA0115.10.233
MA0116.10.0294
MA0117.10.322
MA0119.10.116
MA0122.10.864
MA0124.10.942
MA0125.10.204
MA0131.10.213
MA0135.10.6
MA0136.13.80474e-4
MA0137.20.217
MA0138.20.0231
MA0139.10.0324
MA0140.10.992
MA0141.10.832
MA0142.10.418
MA0143.10.0298
MA0144.10.663
MA0145.10.402
MA0146.10.688
MA0147.10.339
MA0148.10.772
MA0149.10.0266
MA0150.10.36
MA0152.10.534
MA0153.11.47146e-4
MA0154.10.00498
MA0155.10.374
MA0156.10.384
MA0157.10.286
MA0159.10.833
MA0160.10.9
MA0162.10.715
MA0163.10.17
MA0164.10.536
MA0258.10.212
MA0259.10.493



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11260

Novel motifP-value
10.662
100.744
1000.0908
1010.237
1020.552
1030.84
1040.411
1050.818
1062.98872e-5
1070.152
1080.653
1090.249
110.387
1100.697
1110.891
1120.056
1130.0111
1140.191
1150.718
1160.777
1170.576
1180.934
1190.121
120.794
1200.459
1210.708
1220.868
1230.163
1240.0505
1250.271
1260.605
1270.539
1283.26293e-4
1290.338
130.0582
1300.615
1310.102
1320.709
1330.147
1340.737
1350.0129
1360.0153
1370.239
1380.974
1390.0061
140.642
1400.00297
1410.529
1420.632
1430.00485
1440.305
1450.392
1460.331
1470.661
1480.509
1490.0574
150.411
1500.497
1510.195
1520.492
1530.158
1540.448
1550.791
1560.972
1570.32
1580.357
1590.389
160.631
1600.5
1610.808
1620.379
1630.936
1640.401
1650.931
1660.526
1670.896
1680.232
1690.422
170.262
180.054
190.0744
20.315
200.048
210.296
220.247
230.0129
240.992
250.556
260.763
270.0964
280.598
290.805
30.291
300.991
310.205
320.0612
330.261
340.483
350.14
360.193
370.708
380.863
390.683
40.867
400.0183
410.0538
420.57
430.122
440.767
450.419
460.086
470.811
480.99
490.136
50.103
500.571
510.317
520.14
530.166
540.446
550.23
560.45
570.633
580.199
590.118
60.642
600.0517
610.276
620.0788
630.802
640.7
650.132
660.0628
670.985
680.536
690.469
70.863
700.0264
710.553
720.218
730.986
740.254
750.826
760.608
770.497
780.646
790.0914
80.385
800.0825
810.206
820.0065
830.36
840.911
850.00877
860.494
870.161
880.731
890.255
90.0694
900.399
910.0785
920.0625
930.456
940.0178
950.233
960.2
970.798
980.228
990.975



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11260


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
305 (carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002367 (prostate gland)
0005156 (reproductive structure)
0004119 (endoderm-derived structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002530 (gland)
0010147 (male accessory sex gland)
0010317 (germ layer / neural crest derived structure)
0003937 (sex gland)
0005399 (male reproductive gland)
0003101 (male organism)
0000079 (male reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0101019 (prostate gland cell line sample)
0101033 (prostate cancer cell line sample)
0101332 (DU-145 cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0006603 (presumptive mesoderm)
UBERON:0009847 (prostate field)
UBERON:0003353 (epithelium of hindgut)
UBERON:0010316 (germ layer / neural crest)

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