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{{f5samples
{{f5samples
|id=FF:10492-107B6
|DRA_sample_Accession=CAGE@SAMD00005744
|name=transitional-cell carcinoma cell line:JMSU1
|accession_numbers=CAGE;DRX008029;DRR008901;DRZ000326;DRZ001711;DRZ011676;DRZ013061
|sample_id=10492
|ancestors_in_anatomy_facet=UBERON:0000483,UBERON:0005910,UBERON:0000479,UBERON:0004119,UBERON:0000061,UBERON:0000465,UBERON:0005911,UBERON:0001062,UBERON:0000119,UBERON:0000486,UBERON:0010317
|rna_tube_id=107B6
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
|rna_box=107
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:305
|rna_position=B6
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0102869
|sample_cell_lot=
|comment=
|sample_cell_catalog=RCB2227
|created_by=
|sample_company=RIKEN Bioresource centre
|creation_date=
|rna_lot_number=
|data_phase=2
|rna_catalog_number=
|datafreeze_phase=2
|sample_species=Human (Homo sapiens)
|def=
|sample_strain=
|expression_enrichment_score=chr10:28034739..28034756,-!p1@MKX!1.91!80.37!MKX;;chr6:10412392..10412409,-!p4@TFAP2A!1.50!34.79!TFAP2A;;chr3:12330560..12330579,+!p1@PPARG!1.48!33.41!PPARG;;chr11:65668011..65668020,-!p3@FOSL1!1.47!28.60!FOSL1;;chr5:72744594..72744609,-!p1@FOXD1!1.44!117.40!FOXD1;;chr6:10412600..10412637,-!p1@TFAP2A!1.42!41.20!TFAP2A;;chr11:65667884..65667895,-!p2@FOSL1!1.34!78.87!FOSL1;;chr6:10415276..10415341,-!p2@TFAP2A!1.31!23.59!TFAP2A;;chr2:176969228..176969260,+!p1@HOXD11!1.31!19.32!HOXD11;;chr12:52445218..52445237,+!p1@NR4A1!1.30!231.28!NR4A1;;chr6:29648890..29648944,-!p1@ZFP57!1.29!18.36!ZFP57;;chr5:72744445..72744466,-!p2@FOXD1!1.26!28.50!FOXD1;;chr11:65667846..65667868,-!p1@FOSL1!1.22!405.14!FOSL1;;chr21:36421535..36421610,-!p2@RUNX1!1.16!48.35!RUNX1;;chr7:19157248..19157268,-!p1@TWIST1!1.06!29.56!TWIST1;;chr8:37553292..37553317,+!p1@ZNF703!1.03!233.41!ZNF703;;chr10:28032421..28032494,-!p2@MKX!1.03!9.61!MKX;;chr12:85673977..85674015,+!p1@ALX1!1.03!9.61!ALX1;;chr17:38020392..38020477,-!p1@IKZF3!1.00!9.07!IKZF3;;chr5:137804484..137804498,+!p2@EGR1!0.99!35.65!EGR1;;chr16:8962544..8962584,-!p2@CARHSP1!0.99!20.17!CARHSP1;;chr13:79177703..79177729,-!p2@POU4F1!0.98!8.64!POU4F1;;chr6:20402102..20402152,+!p1@E2F3!0.97!35.33!E2F3;;chr10:43134001..43134026,-!p1@ZNF33B!0.96!37.78!ZNF33B;;chr2:176969179..176969226,+!p2@HOXD11!0.94!7.68!HOXD11;;chr11:31832658..31832681,-!p1@PAX6!0.92!7.36!PAX6;;chr6:10412576..10412599,-!p5@TFAP2A!0.92!7.36!TFAP2A;;chr11:34642612..34642646,+!p1@EHF!0.92!7.26!EHF;;chr2:176994408..176994492,+!p1@HOXD8!0.91!7.04!HOXD8;;chr8:128748308..128748324,+!p2@MYC!0.90!200.54!MYC;;chr1:212782094..212782109,+!p1@ATF3!0.90!196.70!ATF3;;chr8:77593474..77593612,+!p1@ZFHX4!0.88!29.56!ZFHX4;;chr8:106330656..106330684,+!p1@ZFPM2!0.88!18.04!ZFPM2;;chr19:45971246..45971265,+!p1@FOSB!0.86!123.80!FOSB;;chr10:28035133..28035148,-!p3@MKX!0.86!6.30!MKX;;chr2:157189180..157189290,-!p1@NR4A2!0.85!33.51!NR4A2;;chr6:20403826..20403886,+!p2@E2F3!0.85!31.80!E2F3;;chr6:126240442..126240459,+!p4@NCOA7!0.85!8.00!NCOA7;;chr8:128750654..128750793,+!p3@MYC!0.84!25.51!MYC;;chr9:102584159..102584174,+!p2@NR4A3!0.84!10.99!NR4A3;;chr3:169381420..169381535,-!p1@MECOM!0.84!7.04!MECOM;;chr3:147111198..147111225,+!p4@ZIC1!0.84!5.98!ZIC1;;chr21:38071430..38071456,+!p1@SIM2!0.84!5.98!SIM2;;chr1:201979703..201979721,+!p2@ELF3!0.84!5.87!ELF3;;chr6:126240380..126240430,+!p2@NCOA7!0.82!15.26!NCOA7;;chr16:8962202..8962222,-!p3@CARHSP1!0.82!10.46!CARHSP1;;chr5:72744562..72744573,-!p3@FOXD1!0.82!7.04!FOXD1;;chr7:27205136..27205164,-!p1@HOXA9!0.82!5.66!HOXA9;;chr6:34204921..34204939,+!p3@HMGA1!0.81!178.55!HMGA1;;chr8:77593448..77593471,+!p2@ZFHX4!0.81!5.44!ZFHX4;;chr8:37553261..37553282,+!p2@ZNF703!0.80!43.76!ZNF703;;chr6:20403727..20403769,+!p4@E2F3!0.80!13.66!E2F3;;chr12:3068466..3068495,+!p3@TEAD4!0.80!12.06!TEAD4;;chr5:72743793..72743855,-!p4@FOXD1!0.80!6.40!FOXD1;;chr6:126102292..126102329,+!p3@NCOA7!0.79!18.14!NCOA7;;chr15:76629123..76629151,+!p1@ISL2!0.79!5.76!ISL2;;chr17:46682321..46682362,-!p1@HOXB6!0.79!5.12!HOXB6;;chr1:59249688..59249703,-!p3@JUN!0.78!32.55!JUN;;chr14:61116183..61116208,-!p1@SIX1!0.78!20.60!SIX1;;chr9:132427972..132428056,+!p1@PRRX2!0.78!6.72!PRRX2;;chr9:100615499..100615519,+!p1@FOXE1!0.78!5.02!FOXE1;;chr16:8962853..8962878,-!p1@CARHSP1!0.77!317.94!CARHSP1;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.77!24.33!TAL1;;chr10:43133950..43133994,-!p2@ZNF33B!0.77!19.10!ZNF33B;;chr15:83953397..83953425,-!p1@BNC1!0.77!5.76!BNC1;;chr3:141747459..141747475,-!p1@TFDP2!0.76!43.86!TFDP2;;chr17:7197911..7197964,-!p1@YBX2!0.76!4.80!YBX2;;chr7:27205106..27205134,-!p2@HOXA9!0.76!4.80!HOXA9;;chr1:161736038..161736056,+!p4@ATF6!0.75!11.53!ATF6;;chr19:54058073..54058088,+!p1@ZNF331!0.75!4.59!ZNF331;;chr15:41913690..41913753,+!p2@MGA!0.74!11.53!MGA;;chr3:168864315..168864339,-!p2@MECOM!0.74!7.79!MECOM;;chr6:10412477..10412490,-!p10@TFAP2A!0.74!4.48!TFAP2A;;chr1:45805872..45805900,+!p2@TOE1!0.73!11.53!TOE1;;chr19:54041669..54041697,+!p2@ZNF331!0.73!4.38!ZNF331;;chr17:41277372..41277418,-!p1@BRCA1!0.72!16.86!BRCA1;;chr3:141121847..141121868,+!p5@ZBTB38!0.72!6.83!ZBTB38;;chr21:38071403..38071428,+!p2@SIM2!0.72!4.27!SIM2;;chr10:104155480..104155534,+!p2@NFKB2!0.71!30.31!NFKB2;;chr6:20403916..20403965,+!p3@E2F3!0.71!20.49!E2F3;;chr12:27485762..27485776,+!p3@ARNTL2!0.71!12.06!ARNTL2;;chr17:46622205..46622218,-!p3@HOXB2!0.71!4.91!HOXB2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.71!4.16!HOXC5;;chr14:29235961..29236008,+!p1@FOXG1!0.71!4.16!FOXG1;;chr16:31085514..31085576,-!p1@ZNF668!0.70!18.46!ZNF668;;chr20:50721803..50721857,-!p2@ZFP64!0.70!6.62!ZFP64;;chr6:10415484..10415508,-!p3@TFAP2A!0.70!4.06!TFAP2A;;chr3:128206762..128206781,-!p2@GATA2!0.69!27.75!GATA2;;chr11:65687362..65687436,+!p3@DRAP1!0.69!20.17!DRAP1;;chr12:52448338..52448401,+!p7@NR4A1!0.69!3.84!NR4A1;;chr13:100623375..100623425,-!p1@ZIC5!0.69!3.84!ZIC5;;chr14:75745523..75745537,+!p1@FOS!0.68!521.58!FOS;;chr3:101568349..101568365,+!p1@NFKBIZ!0.68!227.33!NFKBIZ;;chr1:151319710..151319774,-!p1@RFX5!0.68!43.54!RFX5;;chr1:153940354..153940395,+!p1@CREB3L4!0.68!17.50!CREB3L4;;chr7:73038839..73038862,-!p1@MLXIPL!0.68!3.74!MLXIPL;;chr5:137801160..137801176,+!p1@EGR1!0.67!421.47!EGR1;;chr10:44070016..44070069,-!p1@ZNF239!0.67!12.27!ZNF239;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!0.67!8.75!SOHLH2;;chr9:77112244..77112262,+!p1@RORB!0.67!4.16!RORB;;chr10:28034772..28034783,-!p4@MKX!0.67!3.63!MKX;;chr12:57914286..57914304,-!p1@DDIT3!0.66!152.09!DDIT3;;chr12:3068544..3068597,+!p1@TEAD4!0.66!24.97!TEAD4;;chr17:35767301..35767344,+!p2@TADA2A!0.66!9.61!TADA2A;;chr9:126774018..126774055,+!p1@LHX2!0.66!3.52!LHX2;;chr3:147111231..147111281,+!p3@ZIC1!0.66!3.52!ZIC1;;chr9:102584262..102584276,+!p1@NR4A3!0.65!8.64!NR4A3;;chr15:67418119..67418162,+!p5@SMAD3!0.65!3.95!SMAD3;;chr8:128748470..128748487,+!p1@MYC!0.64!436.09!MYC;;chr18:19749541..19749557,+!p1@GATA6!0.64!12.06!GATA6;;chr10:8096631..8096660,+!p1@GATA3!0.64!4.27!GATA3;;chr2:113994526..113994556,-!p3@PAX8!0.64!3.42!PAX8;;chr3:101575889..101575903,+!p3@NFKBIZ!0.64!3.42!NFKBIZ;;chr13:73633131..73633149,+!p1@KLF5!0.63!40.88!KLF5;;chr12:19592405..19592492,+!p2@AEBP2!0.63!32.98!AEBP2;;chr11:46299199..46299233,+!p1@CREB3L1!0.63!19.53!CREB3L1;;chr14:61191018..61191048,-!p1@SIX4!0.63!7.90!SIX4;;chr8:128750983..128751021,+!p11@MYC!0.63!4.80!MYC;;chr5:137804130..137804156,+!p5@EGR1!0.63!3.52!EGR1;;chr2:177016535..177016548,+!p3@HOXD4!0.63!3.31!HOXD4;;chr1:59249707..59249727,-!p1@JUN!0.62!161.16!JUN;;chr6:19837592..19837621,+!p1@ID4!0.62!22.95!ID4;;chr21:27107465..27107557,+!p3@GABPA!0.62!13.34!GABPA;;chr6:15249128..15249177,+!p4@JARID2!0.62!6.30!JARID2;;chr5:134369905..134369972,-!p1@PITX1!0.62!5.23!PITX1;;chr4:81104895..81104920,+!p2@PRDM8!0.62!5.12!PRDM8;;chr3:168865194..168865245,-!p3@MECOM!0.62!4.27!MECOM;;chr10:104155659..104155676,+!p4@NFKB2!0.62!4.16!NFKB2;;chr14:29234581..29234601,+!p2@FOXG1!0.62!3.20!FOXG1;;chr17:46703687..46703740,-!p1@HOXB9!0.62!3.20!HOXB9;;chr7:26191809..26191890,+!p1@NFE2L3!0.61!17.82!NFE2L3;;chr1:151319654..151319698,-!p2@RFX5!0.61!7.47!RFX5;;chr17:46688334..46688385,-!p1@HOXB7!0.61!4.80!HOXB7;;chr6:15249097..15249115,+!p7@JARID2!0.61!4.38!JARID2;;chr17:46622229..46622257,-!p6@HOXB2!0.61!3.74!HOXB2;;chrX:30327504..30327509,-!p1@NR0B1!0.61!3.10!NR0B1;;chr3:141719209..141719215,-!p10@TFDP2!0.61!3.10!TFDP2;;chr14:55493763..55493824,-!p1@WDHD1!0.60!27.00!WDHD1;;chr8:86089369..86089408,+!p1@E2F5!0.60!9.39!E2F5;;chr8:128747757..128747800,+!p7@MYC!0.60!4.27!MYC;;chr8:106330696..106330719,+!p2@ZFPM2!0.60!4.06!ZFPM2;;chr10:48355030..48355090,+!p1@ZNF488!0.60!4.06!ZNF488;;chr17:46622440..46622477,-!p5@HOXB2!0.60!3.42!HOXB2;;chr10:28032548..28032559,-!p7@MKX!0.60!2.99!MKX;;chr7:97840743..97840786,+!p1@BHLHA15!0.60!2.99!BHLHA15;;chr6:34204672..34204692,+!p1@HMGA1!0.59!396.39!HMGA1;;chr10:114710098..114710130,+!p2@TCF7L2!0.59!26.58!TCF7L2;;chr12:27485785..27485816,+!p1@ARNTL2!0.59!24.33!ARNTL2;;chr20:42295713..42295738,+!p2@MYBL2!0.59!20.71!MYBL2;;chr3:40547564..40547616,+!p1@ZNF620!0.59!4.38!ZNF620;;chr10:111987079..111987115,+!p3@MXI1!0.59!4.27!MXI1;;chr17:42295897..42295953,-!p10@UBTF!0.59!4.06!UBTF;;chr10:28035112..28035130,-!p5@MKX!0.59!2.88!MKX;;chr9:132427883..132427951,+!p2@PRRX2!0.59!2.88!PRRX2;;chr9:77112225..77112238,+!p2@RORB!0.59!2.88!RORB;;chr5:142780189..142780223,-!p6@NR3C1!0.59!2.88!NR3C1;;chr12:2986275..2986363,-!p1@FOXM1!0.58!34.79!FOXM1;;chr19:1863591..1863611,-!p2@KLF16!0.58!32.45!KLF16;;chr8:67525443..67525459,-!p2@MYBL1!0.58!4.59!MYBL1;;chr5:137804405..137804444,+!p3@EGR1!0.58!3.52!EGR1;;chr6:15246261..15246312,+!p1@JARID2!0.57!83.03!JARID2;;chr16:31085714..31085783,+!p1@ZNF646!0.57!54.32!ZNF646;;chr16:30798492..30798535,-!p1@ZNF629!0.57!52.62!ZNF629;;chr17:70117153..70117174,+!p1@SOX9!0.57!34.58!SOX9;;chr1:935398..935465,-!p2@HES4!0.57!6.40!HES4;;chr2:200322654..200322707,-!p2@SATB2!0.57!4.27!SATB2;;chr12:54447599..54447630,+!p3@HOXC4!0.57!3.52!HOXC4;;chr9:114287433..114287513,+!p1@ZNF483!0.56!8.00!ZNF483;;chr2:113993052..113993097,-!p2@PAX8!0.56!6.94!PAX8;;chr12:3068501..3068515,+!p4@TEAD4!0.56!5.12!TEAD4;;chr9:99180662..99180690,-!p2@ZNF367!0.56!3.95!ZNF367;;chr11:65687243..65687276,+!p8@DRAP1!0.56!3.84!DRAP1;;chr3:21792585..21792625,-!p2@ZNF385D!0.56!2.99!ZNF385D;;chr12:52448515..52448538,+!p9@NR4A1!0.56!2.67!NR4A1;;chr17:46126136..46126152,+!p1@NFE2L1!0.55!167.35!NFE2L1;;chr12:77459306..77459365,-!p1@E2F7!0.55!40.34!E2F7;;chr5:172483347..172483407,+!p1@C5orf41!0.55!23.80!CREBRF;;chr21:30671690..30671762,+!p2@BACH1!0.55!10.46!BACH1;;chr8:86089417..86089440,+!p2@E2F5!0.55!5.76!E2F5;;chr9:102584241..102584261,+!p4@NR4A3!0.55!4.38!NR4A3;;chr4:146859626..146859669,-!p2@ZNF827!0.55!4.06!ZNF827;;chr2:46612334..46612349,+!p6@EPAS1!0.55!3.63!EPAS1;;chr1:201979743..201979762,+!p1@ELF3!0.55!2.56!ELF3;;chr10:28035155..28035166,-!p8@MKX!0.55!2.56!MKX;;chr10:104155455..104155479,+!p1@NFKB2!0.54!45.79!NFKB2;;chr11:128392273..128392308,-!p2@ETS1!0.54!12.91!ETS1;;chr11: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1!0.21!0.64!ZIC1;;chr3:168864831..168864851,-!p9@MECOM!0.21!0.64!MECOM;;chr3:168865144..168865160,-!p6@MECOM!0.21!0.64!MECOM;;chr3:21792790..21792824,-!p4@ZNF385D!0.21!0.64!ZNF385D;;chr3:5022272..5022321,+!p7@BHLHE40!0.21!0.64!BHLHE40;;chr4:26323764..26323821,+!p15@RBPJ!0.21!0.64!RBPJ;;chr15:90294087..90294115,-!p1@MESP1!0.21!0.64!MESP1;;chr16:67881647..67881663,-!p3@CENPT!0.21!0.64!CENPT;;chr17:41622731..41622764,-!p5@ETV4!0.21!0.64!ETV4;;chr17:41623716..41623727,-!p12@ETV4!0.21!0.64!ETV4;;chr17:46675469..46675481,-!p4@HOXB6!0.21!0.64!HOXB6;;chr17:46675558..46675577,-!p2@HOXB6!0.21!0.64!HOXB6;;chr17:7197844..7197869,-!p2@YBX2!0.21!0.64!YBX2;;chr19:3574157..3574180,+!p4@HMG20B!0.21!0.64!HMG20B;;chr6:15245752..15245767,+!p14@JARID2!0.21!0.64!JARID2;;chr6:28321827..28321856,-!p5@ZNF323!0.21!0.64!ZNF323;;chr6:34210478..34210481,+!p8@HMGA1!0.21!0.64!HMGA1;;chr7:99634467..99634474,+!p7@ZKSCAN1!0.21!0.64!ZKSCAN1;;chr8:103668114..103668134,-!p5@KLF10!0.21!0.64!KLF10;;chr8:123793688..123793703,+!p12@ZHX2!0.21!0.64!ZHX2;;chr8:128747709..128747723,+!p20@MYC!0.21!0.64!MYC;;chr8:57123898..57123909,-!p3@PLAG1!0.21!0.64!PLAG1;;chr9:124976328..124976372,-!p2@LHX6!0.21!0.64!LHX6;;chr19:47538560..47538591,+!p2@NPAS1!0.21!0.64!NPAS1;;chr1:10856665..10856683,-!p4@CASZ1!0.21!0.64!CASZ1;;chr1:164528866..164528877,+!p12@PBX1!0.21!0.64!PBX1;;chr1:244219392..244219409,+!p5@ZNF238!0.21!0.64!ZNF238;;chr1:40367692..40367703,-!p3@MYCL1!0.21!0.64!MYCL1;;chr20:48808740..48808743,+!p25@CEBPB!0.21!0.64!CEBPB;;chr20:50808639..50808661,-!p6@ZFP64!0.21!0.64!ZFP64;;chr10:3818974..3818985,-!p25@KLF6!0.21!0.64!KLF6;;chr10:3824576..3824590,-!p21@KLF6!0.21!0.64!KLF6;;chr11:128331703..128331717,-!p8@ETS1!0.21!0.64!ETS1;;chr11:31832807..31832823,-!p4@PAX6!0.21!0.64!PAX6;;chr11:45202609..45202623,+!p@chr11:45202609..45202623,+!0.21!0.64!PRDM11;;chr11:46299443..46299459,+!p4@CREB3L1!0.21!0.64!CREB3L1;;chr12:3068979..3068993,+!p11@TEAD4!0.21!0.64!TEAD4;;chr12:54380404..54380433,+!p3@HOXC10!0.21!0.64!HOXC10;;chr12:54393880..54393962,+!p1@HOXC9!0.21!0.64!HOXC9;;chr12:56583362..56583369,-!p7@SMARCC2!0.21!0.64!SMARCC2;;chr14:61190359..61190385,-!p4@SIX4!0.21!0.64!SIX4;;chr9:99180739..99180752,-!p4@ZNF367!0.21!0.64!ZNF367;;chr9:126773880..126773895,+!p2@LHX2!0.21!0.64!LHX2;;chr9:130953000..130953012,-!p10@CIZ1!0.21!0.64!CIZ1;;chr9:88969207..88969218,-!p7@ZCCHC6!0.21!0.64!ZCCHC6;;chr9:14314476..14314487,-!p9@NFIB!0.21!0.64!NFIB;;chr12:7079807..7079848,-!p1@PHB2!0.20!257.21!PHB2;;chr12:124457746..124457828,+!p1@ZNF664!0.20!54.64!ZNF664;;chr19:33864600..33864732,+!p1@CEBPG!0.20!39.81!CEBPG;;chr14:74353530..74353571,+!p1@ZNF410!0.20!26.58!ZNF410;;chr1:114302086..114302174,-!p1@PHTF1!0.20!25.93!PHTF1;;chr3:169491171..169491205,+!p1@MYNN!0.20!24.33!MYNN;;chr1:200379129..200379174,-!p1@ZNF281!0.20!16.76!ZNF281;;chr2:85198369..85198483,+!p2@KCMF1!0.20!16.54!KCMF1;;chr12:6798410..6798503,-!p1@ZNF384!0.20!14.84!ZNF384;;chr15:96874012..96874042,+!p2@NR2F2!0.20!12.27!NR2F2;;chr17:17740330..17740349,-!p3@SREBF1!0.20!8.86!SREBF1;;chr2:145274900..145274934,-!p4@ZEB2!0.20!8.00!ZEB2;;chr2:145275162..145275202,-!p2@ZEB2!0.20!7.79!ZEB2;;chr12:57400261..57400344,-!p1@ZBTB39!0.20!5.98!ZBTB39;;chr6:28092375..28092412,+!p1@ZSCAN16!0.20!5.23!ZSCAN16;;chr16:2059797..2059837,-!p1@ZNF598!0.20!5.12!ZNF598;;chr3:141087393..141087426,+!p3@ZBTB38!0.20!4.91!ZBTB38;;
|sample_dev_stage=
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006595,UBERON:0010316
|sample_tissue=bladder
|sample_donor(cell lot)=
|sample_sex=male
|sample_age=75
|sample_ethnicity=unknown
|rna_rin=
|rna_od260/230=2.06
|rna_od260/280=2.07
|sample_cell_type=unclassifiable
|sample_cell_line=JMSU1
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_experimental_condition=
|sample_disease=transitional-cell carcinoma
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=49.59375
|rna_concentration=1.98375
|sample_note=
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|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000255,CL:0000548
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000119,UBERON:0000465,UBERON:0000468,UBERON:0000479,UBERON:0000483,UBERON:0000486,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0001062,UBERON:0002050,UBERON:0002532,UBERON:0004119,UBERON:0005423,UBERON:0005910,UBERON:0005911
|ancestors_in_disease_facet=DOID:0050687,DOID:14566,DOID:162,DOID:305,DOID:4
|sample_description=
|fonse_cell_line=FF:0101120
|fonse_cell_line=FF:0101120
|fonse_cell_line_closure=FF:0101120
|fonse_cell_line_closure=FF:0101120
Line 66: Line 40:
|fonse_treatment=
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|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10492
|name=transitional-cell carcinoma cell line:JMSU1
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|rna_box=107
|rna_catalog_number=
|rna_concentration=1.98375
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=2.06
|rna_od260/280=2.07
|rna_position=B6
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=107B6
|rna_weight_ug=49.59375
|sample_age=75
|sample_category=cell lines
|sample_cell_catalog=RCB2227
|sample_cell_line=JMSU1
|sample_cell_lot=
|sample_cell_type=unclassifiable
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_company=RIKEN Bioresource centre
|sample_description=
|sample_dev_stage=
|sample_disease=transitional-cell carcinoma
|sample_donor(cell lot)=
|sample_ethnicity=unknown
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;5.92776279415988e-271!GO:0043231;intracellular membrane-bound organelle;3.20201837945186e-225!GO:0043227;membrane-bound organelle;3.82169373651315e-225!GO:0043226;organelle;5.27730634834177e-222!GO:0043229;intracellular organelle;3.06559826999114e-221!GO:0005737;cytoplasm;5.57098717092857e-184!GO:0044422;organelle part;1.16097354609902e-156!GO:0044446;intracellular organelle part;3.40114359415804e-155!GO:0044444;cytoplasmic part;2.38094062148665e-123!GO:0005634;nucleus;6.28176456042147e-110!GO:0032991;macromolecular complex;3.63784936834992e-105!GO:0044238;primary metabolic process;4.26460392898968e-103!GO:0044237;cellular metabolic process;1.01676400642594e-102!GO:0043170;macromolecule metabolic process;8.67538574839587e-97!GO:0044428;nuclear part;4.80811372024495e-94!GO:0030529;ribonucleoprotein complex;1.14582052962856e-89!GO:0003723;RNA binding;1.17248798810093e-87!GO:0043233;organelle lumen;1.46527350579835e-85!GO:0031974;membrane-enclosed lumen;1.46527350579835e-85!GO:0005515;protein binding;3.16298608440967e-79!GO:0005739;mitochondrion;8.51051697347874e-67!GO:0043283;biopolymer metabolic process;1.41093651708707e-62!GO:0006396;RNA processing;1.85069117585453e-60!GO:0016043;cellular component organization and biogenesis;3.37819003799401e-56!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.27597646397032e-55!GO:0031981;nuclear lumen;3.29313321344036e-55!GO:0006412;translation;2.18800316355067e-54!GO:0019538;protein metabolic process;1.18435471421552e-53!GO:0043234;protein complex;9.80081294366972e-53!GO:0010467;gene expression;5.17423331982493e-52!GO:0005840;ribosome;1.46944904958154e-50!GO:0033036;macromolecule localization;8.72921298337827e-48!GO:0015031;protein transport;1.61078070863718e-47!GO:0044260;cellular macromolecule metabolic process;3.58979965590769e-47!GO:0044267;cellular protein metabolic process;6.13631022134437e-47!GO:0031090;organelle membrane;2.13636577359856e-46!GO:0016071;mRNA metabolic process;6.66822317082907e-46!GO:0003735;structural constituent of ribosome;4.73249959642024e-44!GO:0045184;establishment of protein localization;1.08428517894074e-43!GO:0008104;protein localization;1.98302940115182e-43!GO:0044249;cellular biosynthetic process;1.01009960198484e-42!GO:0009058;biosynthetic process;3.13138769867065e-42!GO:0006259;DNA metabolic process;4.59389077111431e-42!GO:0006996;organelle organization and biogenesis;2.43246824819623e-41!GO:0031967;organelle envelope;3.76990493625785e-41!GO:0044429;mitochondrial part;3.92301710710449e-41!GO:0031975;envelope;9.62208469657133e-41!GO:0008380;RNA splicing;1.00583409742776e-40!GO:0006397;mRNA processing;2.74865290179458e-39!GO:0009059;macromolecule biosynthetic process;5.91539616280189e-39!GO:0046907;intracellular transport;1.27834141045837e-38!GO:0043228;non-membrane-bound organelle;5.85655252891181e-38!GO:0043232;intracellular non-membrane-bound organelle;5.85655252891181e-38!GO:0033279;ribosomal subunit;6.4234250518315e-38!GO:0005829;cytosol;1.01251706034306e-37!GO:0065003;macromolecular complex assembly;1.20966392610356e-37!GO:0022613;ribonucleoprotein complex biogenesis and assembly;5.88959975436738e-35!GO:0022607;cellular component assembly;1.88486118656487e-34!GO:0007049;cell cycle;1.88486118656487e-34!GO:0003676;nucleic acid binding;2.27084756994281e-34!GO:0000166;nucleotide binding;2.23726360529925e-33!GO:0005654;nucleoplasm;2.30416421456803e-33!GO:0006886;intracellular protein transport;1.79445348298464e-32!GO:0005681;spliceosome;8.57227397567722e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);8.20766880792454e-27!GO:0051649;establishment of cellular localization;1.43351219175452e-26!GO:0051641;cellular localization;1.83898848430682e-26!GO:0044451;nucleoplasm part;2.12707852117039e-26!GO:0022402;cell cycle process;6.72229426096061e-26!GO:0006974;response to DNA damage stimulus;3.46603396351088e-25!GO:0005740;mitochondrial envelope;1.34570467856565e-24!GO:0016070;RNA metabolic process;1.75113102366998e-24!GO:0016462;pyrophosphatase activity;1.6151040709842e-23!GO:0019866;organelle inner membrane;1.82103389358237e-23!GO:0005694;chromosome;1.91816780213022e-23!GO:0005730;nucleolus;2.07156588231031e-23!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.07156588231031e-23!GO:0016817;hydrolase activity, acting on acid anhydrides;3.25338633932367e-23!GO:0032553;ribonucleotide binding;4.99144834328687e-23!GO:0032555;purine ribonucleotide binding;4.99144834328687e-23!GO:0017111;nucleoside-triphosphatase activity;5.16124082396875e-23!GO:0031966;mitochondrial membrane;6.57832908208537e-23!GO:0017076;purine nucleotide binding;8.39641065659481e-23!GO:0000278;mitotic cell cycle;1.14397671311709e-22!GO:0016874;ligase activity;1.16355973179706e-22!GO:0006512;ubiquitin cycle;1.70954633501974e-22!GO:0008134;transcription factor binding;6.49092426114158e-22!GO:0006281;DNA repair;6.86194154251071e-22!GO:0044445;cytosolic part;1.99394008173149e-21!GO:0005743;mitochondrial inner membrane;2.60635787920331e-21!GO:0044265;cellular macromolecule catabolic process;4.13251394161011e-21!GO:0051603;proteolysis involved in cellular protein catabolic process;1.40389239224665e-20!GO:0019941;modification-dependent protein catabolic process;2.01844296931104e-20!GO:0043632;modification-dependent macromolecule catabolic process;2.01844296931104e-20!GO:0006457;protein folding;2.02599808260281e-20!GO:0005524;ATP binding;2.30922637212425e-20!GO:0044427;chromosomal part;2.46801940781578e-20!GO:0012505;endomembrane system;2.49169989652334e-20!GO:0015935;small ribosomal subunit;3.94461039687865e-20!GO:0006511;ubiquitin-dependent protein catabolic process;4.03581171869161e-20!GO:0044257;cellular protein catabolic process;6.50575158168404e-20!GO:0032559;adenyl ribonucleotide binding;8.77606588937797e-20!GO:0031980;mitochondrial lumen;1.11596191972383e-19!GO:0005759;mitochondrial matrix;1.11596191972383e-19!GO:0022618;protein-RNA complex assembly;2.31214467484155e-19!GO:0030554;adenyl nucleotide binding;2.31546959473515e-19!GO:0043285;biopolymer catabolic process;5.39199061539338e-19!GO:0051276;chromosome organization and biogenesis;7.08830851476437e-19!GO:0015934;large ribosomal subunit;8.04818894991985e-19!GO:0022403;cell cycle phase;8.40828338392739e-19!GO:0009719;response to endogenous stimulus;1.32954480222598e-18!GO:0006119;oxidative phosphorylation;2.96722338464063e-18!GO:0000087;M phase of mitotic cell cycle;4.87527802528774e-18!GO:0051301;cell division;1.05168044876244e-17!GO:0007067;mitosis;1.09295062903482e-17!GO:0005635;nuclear envelope;1.1181245612396e-17!GO:0009057;macromolecule catabolic process;1.72928781600842e-17!GO:0006260;DNA replication;2.00518255044224e-17!GO:0043412;biopolymer modification;3.89434041745559e-17!GO:0005783;endoplasmic reticulum;3.99231945555821e-17!GO:0008135;translation factor activity, nucleic acid binding;4.46355857359559e-17!GO:0044248;cellular catabolic process;6.06393990280292e-17!GO:0042254;ribosome biogenesis and assembly;8.05549076718146e-17!GO:0044455;mitochondrial membrane part;1.18516820350382e-16!GO:0048770;pigment granule;2.26204677370846e-16!GO:0042470;melanosome;2.26204677370846e-16!GO:0030163;protein catabolic process;2.29708806884308e-16!GO:0031965;nuclear membrane;4.07548222988192e-16!GO:0006605;protein targeting;4.70867557316482e-16!GO:0000279;M phase;4.82537419398133e-16!GO:0044432;endoplasmic reticulum part;2.55059656214063e-15!GO:0000502;proteasome complex (sensu Eukaryota);2.91425592905169e-15!GO:0044453;nuclear membrane part;8.59358074265447e-15!GO:0006464;protein modification process;1.10924803690468e-14!GO:0005761;mitochondrial ribosome;2.26506726146061e-14!GO:0000313;organellar ribosome;2.26506726146061e-14!GO:0051082;unfolded protein binding;2.29060039709924e-14!GO:0004386;helicase activity;2.49222121073042e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;2.59373391998462e-14!GO:0000375;RNA splicing, via transesterification reactions;2.59373391998462e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.59373391998462e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.96302914256109e-14!GO:0003712;transcription cofactor activity;4.56971745619392e-14!GO:0016604;nuclear body;4.8279274877661e-14!GO:0016887;ATPase activity;8.14399356688228e-14!GO:0006399;tRNA metabolic process;1.05898073216139e-13!GO:0006325;establishment and/or maintenance of chromatin architecture;1.18736712708507e-13!GO:0048193;Golgi vesicle transport;1.59089197169433e-13!GO:0005746;mitochondrial respiratory chain;1.65934369322971e-13!GO:0043687;post-translational protein modification;2.14293404760519e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.98755459442955e-13!GO:0012501;programmed cell death;3.0627045248737e-13!GO:0006366;transcription from RNA polymerase II promoter;3.62726906617114e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.74892125162089e-13!GO:0051186;cofactor metabolic process;4.22522043547458e-13!GO:0006915;apoptosis;4.31528605529554e-13!GO:0006323;DNA packaging;4.39137475510899e-13!GO:0006913;nucleocytoplasmic transport;4.86192634233115e-13!GO:0005643;nuclear pore;5.40922765285582e-13!GO:0003743;translation initiation factor activity;5.42842960084468e-13!GO:0051726;regulation of cell cycle;5.63619357624889e-13!GO:0000074;regulation of progression through cell cycle;7.29860249528016e-13!GO:0042623;ATPase activity, coupled;9.5435288463041e-13!GO:0051169;nuclear transport;1.62111969935063e-12!GO:0016192;vesicle-mediated transport;2.54224219452513e-12!GO:0006403;RNA localization;3.4270435719877e-12!GO:0006413;translational initiation;3.50067477974483e-12!GO:0050657;nucleic acid transport;3.61853549753103e-12!GO:0051236;establishment of RNA localization;3.61853549753103e-12!GO:0050658;RNA transport;3.61853549753103e-12!GO:0008219;cell death;4.91090425408823e-12!GO:0016265;death;4.91090425408823e-12!GO:0050136;NADH dehydrogenase (quinone) activity;5.02079424837228e-12!GO:0003954;NADH dehydrogenase activity;5.02079424837228e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;5.02079424837228e-12!GO:0006446;regulation of translational initiation;5.28533896245051e-12!GO:0006461;protein complex assembly;5.54374129158705e-12!GO:0065002;intracellular protein transport across a membrane;1.75559548821612e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.37914432208251e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.41770666191783e-11!GO:0016607;nuclear speck;2.78457807260376e-11!GO:0005789;endoplasmic reticulum membrane;5.79086838746849e-11!GO:0006364;rRNA processing;5.95977876965268e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.24482346133567e-11!GO:0008026;ATP-dependent helicase activity;9.20758700510524e-11!GO:0046930;pore complex;1.17645478343454e-10!GO:0016072;rRNA metabolic process;1.17645478343454e-10!GO:0008639;small protein conjugating enzyme activity;1.28630717767142e-10!GO:0042775;organelle ATP synthesis coupled electron transport;1.29419962806921e-10!GO:0042773;ATP synthesis coupled electron transport;1.29419962806921e-10!GO:0006732;coenzyme metabolic process;1.49752920986056e-10!GO:0050794;regulation of cellular process;1.54186097629895e-10!GO:0051028;mRNA transport;2.0571948403838e-10!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.38289927130836e-10!GO:0004842;ubiquitin-protein ligase activity;3.11757991872485e-10!GO:0005794;Golgi apparatus;3.96603239183655e-10!GO:0043566;structure-specific DNA binding;4.08197240295513e-10!GO:0030964;NADH dehydrogenase complex (quinone);4.10486575036079e-10!GO:0045271;respiratory chain complex I;4.10486575036079e-10!GO:0005747;mitochondrial respiratory chain complex I;4.10486575036079e-10!GO:0065004;protein-DNA complex assembly;4.92832476651566e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.05913663978651e-10!GO:0004812;aminoacyl-tRNA ligase activity;5.05913663978651e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.05913663978651e-10!GO:0000775;chromosome, pericentric region;5.9644015726076e-10!GO:0043038;amino acid activation;9.03020881635685e-10!GO:0006418;tRNA aminoacylation for protein translation;9.03020881635685e-10!GO:0043039;tRNA aminoacylation;9.03020881635685e-10!GO:0009056;catabolic process;9.21389110422058e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;9.27116635495832e-10!GO:0017038;protein import;1.72999450051351e-09!GO:0019787;small conjugating protein ligase activity;2.02534034014859e-09!GO:0015630;microtubule cytoskeleton;2.61577337667486e-09!GO:0000785;chromatin;2.67941079117541e-09!GO:0048523;negative regulation of cellular process;3.08231728229277e-09!GO:0003697;single-stranded DNA binding;3.08572535544818e-09!GO:0016881;acid-amino acid ligase activity;4.10843957599814e-09!GO:0006333;chromatin assembly or disassembly;4.56190838976711e-09!GO:0042981;regulation of apoptosis;5.23055188805151e-09!GO:0016568;chromatin modification;5.89066182259704e-09!GO:0009055;electron carrier activity;6.79840329697361e-09!GO:0006261;DNA-dependent DNA replication;6.81569065464449e-09!GO:0043067;regulation of programmed cell death;6.9024134143923e-09!GO:0008565;protein transporter activity;8.37947821325135e-09!GO:0009259;ribonucleotide metabolic process;1.03187361930955e-08!GO:0005768;endosome;1.05194033984286e-08!GO:0006163;purine nucleotide metabolic process;1.25372461379226e-08!GO:0016779;nucleotidyltransferase activity;1.27687954727124e-08!GO:0051246;regulation of protein metabolic process;1.28391453557589e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.57804615523547e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.79193177361664e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.2332971839689e-08!GO:0005793;ER-Golgi intermediate compartment;2.71515808623995e-08!GO:0007005;mitochondrion organization and biogenesis;2.71807576086576e-08!GO:0006164;purine nucleotide biosynthetic process;3.06207018540115e-08!GO:0030532;small nuclear ribonucleoprotein complex;3.06334926001961e-08!GO:0009060;aerobic respiration;4.702886132341e-08!GO:0016740;transferase activity;5.50182201185224e-08!GO:0009260;ribonucleotide biosynthetic process;7.06217359344719e-08!GO:0045333;cellular respiration;7.60267193544796e-08!GO:0048519;negative regulation of biological process;9.23142655202313e-08!GO:0005667;transcription factor complex;1.00682135812432e-07!GO:0043069;negative regulation of programmed cell death;1.29453191247647e-07!GO:0009150;purine ribonucleotide metabolic process;1.30830222641758e-07!GO:0016563;transcription activator activity;1.39992639699579e-07!GO:0051188;cofactor biosynthetic process;1.43982152538105e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.59836670365974e-07!GO:0043066;negative regulation of apoptosis;1.81162642224544e-07!GO:0000075;cell cycle checkpoint;2.03199559434542e-07!GO:0003713;transcription coactivator activity;2.20605499251713e-07!GO:0051170;nuclear import;3.13027546893584e-07!GO:0009152;purine ribonucleotide biosynthetic process;3.2824265740007e-07!GO:0006888;ER to Golgi vesicle-mediated transport;3.58552454610002e-07!GO:0043623;cellular protein complex assembly;3.72563558015425e-07!GO:0032446;protein modification by small protein conjugation;4.67874255341948e-07!GO:0005657;replication fork;4.88104787436521e-07!GO:0015986;ATP synthesis coupled proton transport;4.89179528838416e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.89179528838416e-07!GO:0050789;regulation of biological process;4.90592802638406e-07!GO:0016787;hydrolase activity;5.03381819722112e-07!GO:0019222;regulation of metabolic process;5.73388392480368e-07!GO:0019829;cation-transporting ATPase activity;5.95355268436992e-07!GO:0005819;spindle;5.96709477310735e-07!GO:0016567;protein ubiquitination;6.49631054599853e-07!GO:0009199;ribonucleoside triphosphate metabolic process;7.45176948253127e-07!GO:0006793;phosphorus metabolic process;8.55667475033075e-07!GO:0006796;phosphate metabolic process;8.55667475033075e-07!GO:0009117;nucleotide metabolic process;8.67530689665044e-07!GO:0006606;protein import into nucleus;8.69492826262921e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;8.75181798395285e-07!GO:0005839;proteasome core complex (sensu Eukaryota);9.21306022273287e-07!GO:0000245;spliceosome assembly;9.69951403070292e-07!GO:0003924;GTPase activity;9.92690737826861e-07!GO:0009141;nucleoside triphosphate metabolic process;1.02915445277067e-06!GO:0007051;spindle organization and biogenesis;1.11456762246585e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.18846379210582e-06!GO:0051427;hormone receptor binding;1.25164267824607e-06!GO:0005813;centrosome;1.30778398530306e-06!GO:0006916;anti-apoptosis;1.30778398530306e-06!GO:0009142;nucleoside triphosphate biosynthetic process;1.37035709032269e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.37035709032269e-06!GO:0048475;coated membrane;1.39989232497773e-06!GO:0030117;membrane coat;1.39989232497773e-06!GO:0051329;interphase of mitotic cell cycle;1.41218138756179e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.58751352894125e-06!GO:0009144;purine nucleoside triphosphate metabolic process;1.58751352894125e-06!GO:0051325;interphase;1.71739206285407e-06!GO:0005815;microtubule organizing center;2.31898580703724e-06!GO:0030120;vesicle coat;2.33336451715591e-06!GO:0030662;coated vesicle membrane;2.33336451715591e-06!GO:0005788;endoplasmic reticulum lumen;2.40526463787859e-06!GO:0031324;negative regulation of cellular metabolic process;2.58583127252825e-06!GO:0006099;tricarboxylic acid cycle;2.58583127252825e-06!GO:0046356;acetyl-CoA catabolic process;2.58583127252825e-06!GO:0035257;nuclear hormone receptor binding;2.8694827108164e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.07540527660742e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.07540527660742e-06!GO:0008094;DNA-dependent ATPase activity;3.10002044663772e-06!GO:0044440;endosomal part;3.24101372084386e-06!GO:0010008;endosome membrane;3.24101372084386e-06!GO:0003714;transcription corepressor activity;3.49861523218797e-06!GO:0016853;isomerase activity;3.5181245374957e-06!GO:0015078;hydrogen ion transmembrane transporter activity;3.57787507244003e-06!GO:0004298;threonine endopeptidase activity;3.58872198378695e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;3.64555916579069e-06!GO:0009108;coenzyme biosynthetic process;3.67667637786096e-06!GO:0031497;chromatin assembly;3.70795342986704e-06!GO:0046034;ATP metabolic process;3.74452467028471e-06!GO:0019899;enzyme binding;3.86433000226598e-06!GO:0006334;nucleosome assembly;3.89660473660054e-06!GO:0003690;double-stranded DNA binding;4.4615397463952e-06!GO:0045786;negative regulation of progression through cell cycle;4.53629367758185e-06!GO:0006754;ATP biosynthetic process;5.81548331637727e-06!GO:0006753;nucleoside phosphate metabolic process;5.81548331637727e-06!GO:0009109;coenzyme catabolic process;6.14755920760807e-06!GO:0016469;proton-transporting two-sector ATPase complex;6.54502519226459e-06!GO:0006613;cotranslational protein targeting to membrane;6.58665448759471e-06!GO:0003899;DNA-directed RNA polymerase activity;8.1579767501329e-06!GO:0006084;acetyl-CoA metabolic process;8.82132936748113e-06!GO:0005770;late endosome;9.66615031538589e-06!GO:0016310;phosphorylation;9.66615031538589e-06!GO:0000151;ubiquitin ligase complex;1.04315899884537e-05!GO:0045259;proton-transporting ATP synthase complex;1.2489663627569e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.35120203042254e-05!GO:0005525;GTP binding;1.44522019488006e-05!GO:0000776;kinetochore;1.65859181430262e-05!GO:0008033;tRNA processing;1.70130106906851e-05!GO:0003724;RNA helicase activity;1.81479765651428e-05!GO:0005773;vacuole;2.09514954843292e-05!GO:0016564;transcription repressor activity;2.10689614232113e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.14344621519402e-05!GO:0006752;group transfer coenzyme metabolic process;2.2226638684777e-05!GO:0031988;membrane-bound vesicle;2.32236898145259e-05!GO:0009892;negative regulation of metabolic process;2.6931529357646e-05!GO:0051789;response to protein stimulus;2.78342010363614e-05!GO:0006986;response to unfolded protein;2.78342010363614e-05!GO:0051187;cofactor catabolic process;2.93610335681899e-05!GO:0000079;regulation of cyclin-dependent protein kinase activity;3.12355646390749e-05!GO:0005769;early endosome;3.37692045980319e-05!GO:0016023;cytoplasmic membrane-bound vesicle;3.44137314191448e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;3.56353602010041e-05!GO:0044452;nucleolar part;3.66284825883328e-05!GO:0005762;mitochondrial large ribosomal subunit;3.83914318413772e-05!GO:0000315;organellar large ribosomal subunit;3.83914318413772e-05!GO:0007010;cytoskeleton organization and biogenesis;3.83914318413772e-05!GO:0042802;identical protein binding;3.98488585899768e-05!GO:0005798;Golgi-associated vesicle;4.38536717822363e-05!GO:0000314;organellar small ribosomal subunit;4.63216512331168e-05!GO:0005763;mitochondrial small ribosomal subunit;4.63216512331168e-05!GO:0006302;double-strand break repair;4.79653982467968e-05!GO:0007059;chromosome segregation;5.27633381690368e-05!GO:0016363;nuclear matrix;6.59373776337728e-05!GO:0031323;regulation of cellular metabolic process;7.12359049815565e-05!GO:0051052;regulation of DNA metabolic process;7.18621728297923e-05!GO:0005048;signal sequence binding;7.49925622488004e-05!GO:0051168;nuclear export;7.89933085672589e-05!GO:0000323;lytic vacuole;7.98640619151122e-05!GO:0005764;lysosome;7.98640619151122e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;8.0404116010558e-05!GO:0006414;translational elongation;8.24157931885415e-05!GO:0003729;mRNA binding;8.24157931885415e-05!GO:0031982;vesicle;8.52332690454758e-05!GO:0003678;DNA helicase activity;9.62641184807245e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000101711231907563!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000102702061289796!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000104721629337466!GO:0030867;rough endoplasmic reticulum membrane;0.000113867989379882!GO:0005791;rough endoplasmic reticulum;0.000114291570607841!GO:0016741;transferase activity, transferring one-carbon groups;0.000114291570607841!GO:0006352;transcription initiation;0.000115327064389814!GO:0000049;tRNA binding;0.000135021450549148!GO:0032561;guanyl ribonucleotide binding;0.000140308595869916!GO:0019001;guanyl nucleotide binding;0.000140308595869916!GO:0007093;mitotic cell cycle checkpoint;0.000144996718828188!GO:0016859;cis-trans isomerase activity;0.000152394134836213!GO:0008168;methyltransferase activity;0.000155102935829946!GO:0009112;nucleobase metabolic process;0.000157082651237953!GO:0031410;cytoplasmic vesicle;0.00015756411332046!GO:0003682;chromatin binding;0.000166530526183492!GO:0006612;protein targeting to membrane;0.000171800490490638!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000181766049298372!GO:0032508;DNA duplex unwinding;0.000195138683143069!GO:0032392;DNA geometric change;0.000195138683143069!GO:0016491;oxidoreductase activity;0.000200736332608108!GO:0008654;phospholipid biosynthetic process;0.00020215758533005!GO:0006402;mRNA catabolic process;0.000203241835871724!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000207236236321173!GO:0015980;energy derivation by oxidation of organic compounds;0.000213191207316202!GO:0003684;damaged DNA binding;0.000231186531690561!GO:0048522;positive regulation of cellular process;0.000262188034174591!GO:0043021;ribonucleoprotein binding;0.000267814350832509!GO:0006310;DNA recombination;0.000291141631362351!GO:0045454;cell redox homeostasis;0.000293436197960642!GO:0000059;protein import into nucleus, docking;0.000314319755047829!GO:0007088;regulation of mitosis;0.000325204184093629!GO:0008250;oligosaccharyl transferase complex;0.000354470706391451!GO:0006839;mitochondrial transport;0.000357747576340909!GO:0004674;protein serine/threonine kinase activity;0.000390410633074155!GO:0008186;RNA-dependent ATPase activity;0.000390428853284679!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000413032540006128!GO:0044431;Golgi apparatus part;0.00042577432623582!GO:0031072;heat shock protein binding;0.000430314425395821!GO:0051252;regulation of RNA metabolic process;0.000436059757690541!GO:0006401;RNA catabolic process;0.000436812181927246!GO:0004576;oligosaccharyl transferase activity;0.000456477865339985!GO:0009116;nucleoside metabolic process;0.000564184037244082!GO:0008361;regulation of cell size;0.000568938928101449!GO:0006350;transcription;0.000587677760593954!GO:0030880;RNA polymerase complex;0.000635246035019754!GO:0051059;NF-kappaB binding;0.000651960838147107!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000654842409684928!GO:0050662;coenzyme binding;0.000735150569110394!GO:0006950;response to stress;0.000772303225526097!GO:0007052;mitotic spindle organization and biogenesis;0.000813980220412683!GO:0007017;microtubule-based process;0.000837271536700988!GO:0046483;heterocycle metabolic process;0.000838533931486152!GO:0031968;organelle outer membrane;0.000847437610870902!GO:0016049;cell growth;0.000867100790436228!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000993550934080294!GO:0006268;DNA unwinding during replication;0.00100654817576518!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00100714497306344!GO:0006626;protein targeting to mitochondrion;0.00101326866235849!GO:0051540;metal cluster binding;0.00101536664555609!GO:0051536;iron-sulfur cluster binding;0.00101536664555609!GO:0006417;regulation of translation;0.00104680086874694!GO:0043681;protein import into mitochondrion;0.00113184440633435!GO:0019783;small conjugating protein-specific protease activity;0.00113909997413277!GO:0000082;G1/S transition of mitotic cell cycle;0.00114707402908758!GO:0008234;cysteine-type peptidase activity;0.00115433848007309!GO:0004004;ATP-dependent RNA helicase activity;0.00115879161630719!GO:0045045;secretory pathway;0.00119526796457112!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00120888779604381!GO:0000428;DNA-directed RNA polymerase complex;0.00120888779604381!GO:0048471;perinuclear region of cytoplasm;0.00124346494592146!GO:0005874;microtubule;0.00124346494592146!GO:0019867;outer membrane;0.00125664565448193!GO:0008022;protein C-terminus binding;0.00127800938163892!GO:0007050;cell cycle arrest;0.00129118672059079!GO:0016481;negative regulation of transcription;0.001348873518985!GO:0004527;exonuclease activity;0.0013519736665906!GO:0009165;nucleotide biosynthetic process;0.00138899487581513!GO:0005885;Arp2/3 protein complex;0.00141566910242425!GO:0003702;RNA polymerase II transcription factor activity;0.00143296773163153!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00145366995689744!GO:0004843;ubiquitin-specific protease activity;0.00145726568888198!GO:0003746;translation elongation factor activity;0.00151653368095593!GO:0035258;steroid hormone receptor binding;0.00156640000796725!GO:0065009;regulation of a molecular function;0.00162782738964061!GO:0046983;protein dimerization activity;0.00165402069682376!GO:0065007;biological regulation;0.00173159056609629!GO:0051920;peroxiredoxin activity;0.00173570207849289!GO:0004221;ubiquitin thiolesterase activity;0.00174654698786917!GO:0006520;amino acid metabolic process;0.00180307218305031!GO:0006383;transcription from RNA polymerase III promoter;0.00182032619687939!GO:0005741;mitochondrial outer membrane;0.00184710775216671!GO:0016251;general RNA polymerase II transcription factor activity;0.00186079968650404!GO:0030176;integral to endoplasmic reticulum membrane;0.00192373856638697!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00197143993291244!GO:0007243;protein kinase cascade;0.0019782630137764!GO:0008139;nuclear localization sequence binding;0.00204810217260012!GO:0006091;generation of precursor metabolites and energy;0.00205836433680461!GO:0000228;nuclear chromosome;0.00208426723531667!GO:0043284;biopolymer biosynthetic process;0.00213075129864846!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00218674990462632!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00218674990462632!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00218674990462632!GO:0033116;ER-Golgi intermediate compartment membrane;0.00222306098215485!GO:0006891;intra-Golgi vesicle-mediated transport;0.00225065192969663!GO:0010468;regulation of gene expression;0.00232183523304318!GO:0000096;sulfur amino acid metabolic process;0.00233976365275343!GO:0006284;base-excision repair;0.00235222895630178!GO:0001558;regulation of cell growth;0.00247585392170547!GO:0043488;regulation of mRNA stability;0.00252778503433454!GO:0043487;regulation of RNA stability;0.00252778503433454!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00252778503433454!GO:0018196;peptidyl-asparagine modification;0.00256320430552867!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00256320430552867!GO:0051287;NAD binding;0.00260831342915876!GO:0043596;nuclear replication fork;0.00260831342915876!GO:0048037;cofactor binding;0.00266399640574107!GO:0048500;signal recognition particle;0.00267571967969243!GO:0019752;carboxylic acid metabolic process;0.00276335854367921!GO:0008312;7S RNA binding;0.00294443902920707!GO:0030134;ER to Golgi transport vesicle;0.00294443902920707!GO:0016126;sterol biosynthetic process;0.00306463811971649!GO:0051539;4 iron, 4 sulfur cluster binding;0.0032018090436853!GO:0007006;mitochondrial membrane organization and biogenesis;0.00326595771123744!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00341713252835637!GO:0016197;endosome transport;0.00342295828581848!GO:0006082;organic acid metabolic process;0.00342823573784113!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00360682618160293!GO:0006984;ER-nuclear signaling pathway;0.00364134033318569!GO:0051087;chaperone binding;0.00365264441514028!GO:0006275;regulation of DNA replication;0.0038206933669509!GO:0006289;nucleotide-excision repair;0.0038206933669509!GO:0016790;thiolester hydrolase activity;0.00383752382361845!GO:0005684;U2-dependent spliceosome;0.00394010643222507!GO:0045941;positive regulation of transcription;0.00394616718217861!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00400687093376846!GO:0030036;actin cytoskeleton organization and biogenesis;0.00406499868217461!GO:0046966;thyroid hormone receptor binding;0.00413327357163346!GO:0030521;androgen receptor signaling pathway;0.00424242449666606!GO:0031326;regulation of cellular biosynthetic process;0.00428830186448359!GO:0009889;regulation of biosynthetic process;0.00429365494325167!GO:0004518;nuclease activity;0.00429428392256106!GO:0000139;Golgi membrane;0.00456074451371298!GO:0045792;negative regulation of cell size;0.00456074451371298!GO:0006144;purine base metabolic process;0.00461280971322286!GO:0031902;late endosome membrane;0.00468657377108249!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0047765837015753!GO:0045047;protein targeting to ER;0.0047765837015753!GO:0031252;leading edge;0.00484455873601599!GO:0045893;positive regulation of transcription, DNA-dependent;0.00495060679375806!GO:0005637;nuclear inner membrane;0.00500644854918242!GO:0005876;spindle microtubule;0.00510248985606537!GO:0008408;3'-5' exonuclease activity;0.00536755177413149!GO:0019843;rRNA binding;0.00541314186388825!GO:0046474;glycerophospholipid biosynthetic process;0.00572066029436737!GO:0016272;prefoldin complex;0.00572066029436737!GO:0030308;negative regulation of cell growth;0.00604156945781452!GO:0008610;lipid biosynthetic process;0.00611632072518977!GO:0009119;ribonucleoside metabolic process;0.00613874474667488!GO:0000922;spindle pole;0.0061533898009682!GO:0030127;COPII vesicle coat;0.00617997236327884!GO:0012507;ER to Golgi transport vesicle membrane;0.00617997236327884!GO:0046467;membrane lipid biosynthetic process;0.00623903029530767!GO:0030663;COPI coated vesicle membrane;0.00624458551537521!GO:0030126;COPI vesicle coat;0.00624458551537521!GO:0006892;post-Golgi vesicle-mediated transport;0.00639313005342385!GO:0030133;transport vesicle;0.00651614853687796!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00654120794290364!GO:0016584;nucleosome positioning;0.00654120794290364!GO:0006595;polyamine metabolic process;0.00660611046249368!GO:0045926;negative regulation of growth;0.00662492222080654!GO:0031901;early endosome membrane;0.00663158901053405!GO:0031124;mRNA 3'-end processing;0.00682417355026457!GO:0044454;nuclear chromosome part;0.0068348578452794!GO:0043433;negative regulation of transcription factor activity;0.00707427606419309!GO:0046112;nucleobase biosynthetic process;0.00715226890927074!GO:0003756;protein disulfide isomerase activity;0.00715446940781247!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.00715446940781247!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00725429716872034!GO:0008637;apoptotic mitochondrial changes;0.00725429716872034!GO:0015631;tubulin binding;0.00744169993113311!GO:0015992;proton transport;0.0076168688793672!GO:0006405;RNA export from nucleus;0.00768207200511153!GO:0033673;negative regulation of kinase activity;0.00768248921014749!GO:0006469;negative regulation of protein kinase activity;0.00768248921014749!GO:0043624;cellular protein complex disassembly;0.0077198631868103!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0077198631868103!GO:0043065;positive regulation of apoptosis;0.00774214155498858!GO:0003711;transcription elongation regulator activity;0.00774214155498858!GO:0009451;RNA modification;0.00789476740740116!GO:0005905;coated pit;0.00790006376482125!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00790006376482125!GO:0015399;primary active transmembrane transporter activity;0.00790006376482125!GO:0008652;amino acid biosynthetic process;0.00793647747468424!GO:0030658;transport vesicle membrane;0.00802011248945909!GO:0048468;cell development;0.00819542841946002!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00819542841946002!GO:0043022;ribosome binding;0.00821147297480503!GO:0046489;phosphoinositide biosynthetic process;0.00821147297480503!GO:0032984;macromolecular complex disassembly;0.00826714301785245!GO:0006818;hydrogen transport;0.00866431967230358!GO:0004003;ATP-dependent DNA helicase activity;0.0088188408990793!GO:0032507;maintenance of cellular protein localization;0.00899034020401485!GO:0030118;clathrin coat;0.00901416407121487!GO:0006338;chromatin remodeling;0.00908381473017363!GO:0008632;apoptotic program;0.00933724162712575!GO:0008097;5S rRNA binding;0.00935054721107016!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00964591191672893!GO:0030137;COPI-coated vesicle;0.00980463176459452!GO:0000786;nucleosome;0.00985336484613716!GO:0043241;protein complex disassembly;0.00989873328866244!GO:0006611;protein export from nucleus;0.0102222861034151!GO:0048487;beta-tubulin binding;0.0102797847172043!GO:0043068;positive regulation of programmed cell death;0.0102974776838827!GO:0000339;RNA cap binding;0.0102974776838827!GO:0006270;DNA replication initiation;0.0105588521782377!GO:0005832;chaperonin-containing T-complex;0.010583630263192!GO:0006376;mRNA splice site selection;0.010583630263192!GO:0000389;nuclear mRNA 3'-splice site recognition;0.010583630263192!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0110518591132638!GO:0005669;transcription factor TFIID complex;0.0110689577234946!GO:0032259;methylation;0.0111771567923051!GO:0006740;NADPH regeneration;0.0111857527464792!GO:0006098;pentose-phosphate shunt;0.0111857527464792!GO:0007264;small GTPase mediated signal transduction;0.0112145369423633!GO:0032200;telomere organization and biogenesis;0.0112539499256608!GO:0000723;telomere maintenance;0.0112539499256608!GO:0051348;negative regulation of transferase activity;0.0115721235896739!GO:0042393;histone binding;0.0116328111561373!GO:0000178;exosome (RNase complex);0.0117304719395491!GO:0040008;regulation of growth;0.0117619445248016!GO:0043601;nuclear replisome;0.0119422492037875!GO:0030894;replisome;0.0119422492037875!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0119501308362922!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0119501308362922!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0119979366791331!GO:0000792;heterochromatin;0.0122157744176817!GO:0043130;ubiquitin binding;0.0132161004608588!GO:0032182;small conjugating protein binding;0.0132161004608588!GO:0006607;NLS-bearing substrate import into nucleus;0.0132387043184425!GO:0009066;aspartate family amino acid metabolic process;0.0134789698586751!GO:0045185;maintenance of protein localization;0.0136107489852912!GO:0005758;mitochondrial intermembrane space;0.0137667488718678!GO:0030660;Golgi-associated vesicle membrane;0.0139954784282358!GO:0007034;vacuolar transport;0.0142099531743671!GO:0006695;cholesterol biosynthetic process;0.014327302359076!GO:0016044;membrane organization and biogenesis;0.0145830442450408!GO:0030659;cytoplasmic vesicle membrane;0.0146878991025956!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0147842370383577!GO:0000070;mitotic sister chromatid segregation;0.0149472152212033!GO:0045947;negative regulation of translational initiation;0.0149472152212033!GO:0000819;sister chromatid segregation;0.0149472152212033!GO:0000287;magnesium ion binding;0.0149882159975339!GO:0009081;branched chain family amino acid metabolic process;0.0151888912178555!GO:0051098;regulation of binding;0.0155525428540896!GO:0031577;spindle checkpoint;0.0156113230610734!GO:0000097;sulfur amino acid biosynthetic process;0.0156243871452563!GO:0051101;regulation of DNA binding;0.0156862705910668!GO:0012506;vesicle membrane;0.0160194022914067!GO:0017166;vinculin binding;0.0160204671006024!GO:0043414;biopolymer methylation;0.0162653750623223!GO:0050750;low-density lipoprotein receptor binding;0.0162653750623223!GO:0006213;pyrimidine nucleoside metabolic process;0.0163138820669477!GO:0016791;phosphoric monoester hydrolase activity;0.0167156155952838!GO:0046822;regulation of nucleocytoplasmic transport;0.0169424317016734!GO:0031970;organelle envelope lumen;0.0171863573290881!GO:0046128;purine ribonucleoside metabolic process;0.0171863573290881!GO:0042278;purine nucleoside metabolic process;0.0171863573290881!GO:0016301;kinase activity;0.0173181868269912!GO:0006400;tRNA modification;0.0173181868269912!GO:0047485;protein N-terminus binding;0.0175813525937618!GO:0000086;G2/M transition of mitotic cell cycle;0.0178172188462795!GO:0004532;exoribonuclease activity;0.0181258787945092!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0181258787945092!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.018360736479451!GO:0015002;heme-copper terminal oxidase activity;0.018360736479451!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.018360736479451!GO:0004129;cytochrome-c oxidase activity;0.018360736479451!GO:0044433;cytoplasmic vesicle part;0.0188422030372718!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0189231154829198!GO:0048518;positive regulation of biological process;0.0189728936283304!GO:0051651;maintenance of cellular localization;0.0193453428629317!GO:0031123;RNA 3'-end processing;0.0194007624111599!GO:0006730;one-carbon compound metabolic process;0.0196520382486708!GO:0030029;actin filament-based process;0.0199187564298881!GO:0030132;clathrin coat of coated pit;0.0200524867972761!GO:0000725;recombinational repair;0.0203390177383196!GO:0000724;double-strand break repair via homologous recombination;0.0203390177383196!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0205892839516634!GO:0032774;RNA biosynthetic process;0.020695041920621!GO:0030433;ER-associated protein catabolic process;0.0209860349754163!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0209860349754163!GO:0008180;signalosome;0.0210192237383354!GO:0006220;pyrimidine nucleotide metabolic process;0.0212861193746717!GO:0019900;kinase binding;0.0213189332915475!GO:0006360;transcription from RNA polymerase I promoter;0.0213189332915475!GO:0032940;secretion by cell;0.0213580148562242!GO:0005774;vacuolar membrane;0.0215290248056588!GO:0006650;glycerophospholipid metabolic process;0.0215291285207436!GO:0030384;phosphoinositide metabolic process;0.0217747982660861!GO:0000152;nuclear ubiquitin ligase complex;0.0217747982660861!GO:0050681;androgen receptor binding;0.0220378348252342!GO:0042770;DNA damage response, signal transduction;0.0224888230128376!GO:0031625;ubiquitin protein ligase binding;0.0225709249532181!GO:0030518;steroid hormone receptor signaling pathway;0.0228591102416602!GO:0050790;regulation of catalytic activity;0.0229099484031844!GO:0006519;amino acid and derivative metabolic process;0.0230040253322571!GO:0003725;double-stranded RNA binding;0.0232830928895026!GO:0006497;protein amino acid lipidation;0.0234138320303636!GO:0008276;protein methyltransferase activity;0.0235209105783072!GO:0006301;postreplication repair;0.0239090632918777!GO:0022408;negative regulation of cell-cell adhesion;0.0239090632918777!GO:0051716;cellular response to stimulus;0.0240062779433265!GO:0006351;transcription, DNA-dependent;0.0244309179762037!GO:0016860;intramolecular oxidoreductase activity;0.0244309179762037!GO:0030100;regulation of endocytosis;0.0251900854029493!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.025532750470033!GO:0001952;regulation of cell-matrix adhesion;0.025894778260513!GO:0006378;mRNA polyadenylation;0.0268783475433188!GO:0009967;positive regulation of signal transduction;0.0274370003877435!GO:0009303;rRNA transcription;0.0275071696531908!GO:0030032;lamellipodium biogenesis;0.0282102378080854!GO:0006007;glucose catabolic process;0.0285676938036362!GO:0031570;DNA integrity checkpoint;0.028788116219359!GO:0022411;cellular component disassembly;0.0289185137008371!GO:0001836;release of cytochrome c from mitochondria;0.0291284792517867!GO:0007041;lysosomal transport;0.029651224280096!GO:0030968;unfolded protein response;0.0297277538031193!GO:0022890;inorganic cation transmembrane transporter activity;0.0304559725487242!GO:0005784;translocon complex;0.0310340096036648!GO:0042158;lipoprotein biosynthetic process;0.0311002488939275!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0313902768661992!GO:0007346;regulation of progression through mitotic cell cycle;0.0316131216656317!GO:0005869;dynactin complex;0.0316852693341572!GO:0019206;nucleoside kinase activity;0.0321244436896797!GO:0046982;protein heterodimerization activity;0.0326155335065429!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.032921251485241!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.0329329706528027!GO:0030224;monocyte differentiation;0.0329342523093287!GO:0051338;regulation of transferase activity;0.0331004241340515!GO:0009067;aspartate family amino acid biosynthetic process;0.0331004241340515!GO:0000793;condensed chromosome;0.033145913925782!GO:0008047;enzyme activator activity;0.033145913925782!GO:0007004;telomere maintenance via telomerase;0.0333300500354119!GO:0016579;protein deubiquitination;0.0339247686706652!GO:0000303;response to superoxide;0.0341815791874732!GO:0043549;regulation of kinase activity;0.0345184765310401!GO:0007021;tubulin folding;0.0351397342758559!GO:0006541;glutamine metabolic process;0.0360063391814194!GO:0008536;Ran GTPase binding;0.0368046030425238!GO:0043189;H4/H2A histone acetyltransferase complex;0.0378629275511669!GO:0009113;purine base biosynthetic process;0.0385510181693266!GO:0035267;NuA4 histone acetyltransferase complex;0.0387724988956964!GO:0006643;membrane lipid metabolic process;0.0388239206153134!GO:0043492;ATPase activity, coupled to movement of substances;0.0388268708613108!GO:0030119;AP-type membrane coat adaptor complex;0.0393944619953519!GO:0051053;negative regulation of DNA metabolic process;0.0394102775608109!GO:0019901;protein kinase binding;0.0402130065733439!GO:0008629;induction of apoptosis by intracellular signals;0.0404556100807599!GO:0040029;regulation of gene expression, epigenetic;0.0404945369577647!GO:0000910;cytokinesis;0.0405194888654556!GO:0005663;DNA replication factor C complex;0.0408270839766744!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0409405057868041!GO:0016311;dephosphorylation;0.0419134732688244!GO:0005765;lysosomal membrane;0.0419134732688244!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0419134732688244!GO:0010257;NADH dehydrogenase complex assembly;0.0419134732688244!GO:0033108;mitochondrial respiratory chain complex assembly;0.0419134732688244!GO:0003677;DNA binding;0.0430755648513222!GO:0005862;muscle thin filament tropomyosin;0.0431389852594641!GO:0004721;phosphoprotein phosphatase activity;0.0434821877339289!GO:0051235;maintenance of localization;0.0435133152774994!GO:0009225;nucleotide-sugar metabolic process;0.0440904665444934!GO:0004300;enoyl-CoA hydratase activity;0.0448563656098558!GO:0008538;proteasome activator activity;0.0454587331927964!GO:0000781;chromosome, telomeric region;0.0456657652294392!GO:0004659;prenyltransferase activity;0.0457247875306854!GO:0001953;negative regulation of cell-matrix adhesion;0.0457315091460288!GO:0045449;regulation of transcription;0.0457538782977569!GO:0044437;vacuolar part;0.046292256594664!GO:0009124;nucleoside monophosphate biosynthetic process;0.0463609042538688!GO:0009123;nucleoside monophosphate metabolic process;0.0463609042538688!GO:0008243;plasminogen activator activity;0.0465177624169139!GO:0046426;negative regulation of JAK-STAT cascade;0.0465739578631578!GO:0019887;protein kinase regulator activity;0.0469278866714933!GO:0006206;pyrimidine base metabolic process;0.0470494930589267!GO:0004860;protein kinase inhibitor activity;0.0472433914214316!GO:0032404;mismatch repair complex binding;0.0473919802060053!GO:0006596;polyamine biosynthetic process;0.047456394452592!GO:0004239;methionyl aminopeptidase activity;0.0476534140049774!GO:0033559;unsaturated fatty acid metabolic process;0.0478819905133151!GO:0006636;unsaturated fatty acid biosynthetic process;0.0478819905133151!GO:0031529;ruffle organization and biogenesis;0.0486935133262846!GO:0004197;cysteine-type endopeptidase activity;0.0491490248073247!GO:0050811;GABA receptor binding;0.049170756651018!GO:0033239;negative regulation of amine metabolic process;0.0494341012103941!GO:0045763;negative regulation of amino acid metabolic process;0.0494341012103941!GO:0001933;negative regulation of protein amino acid phosphorylation;0.0494341012103941
|sample_id=10492
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=bladder
|top_motifs=HIF1A:2.07117755363;bHLH_family:1.97317584864;NKX2-1,4:1.83752597816;PITX1..3:1.82771282409;FOXQ1:1.75164944084;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.48510085906;E2F1..5:1.35523424264;MYB:1.35090401408;AIRE:1.2301506833;NKX6-1,2:1.15225074608;NKX3-1:1.12627029136;ZNF384:1.03066465365;FOXP1:1.01862918748;PDX1:0.983695344002;NFY{A,B,C}:0.970026747997;PPARG:0.954037696546;CDX1,2,4:0.915563389541;NKX2-2,8:0.836745354092;BREu{core}:0.83660251887;ZBTB16:0.690066311784;HBP1_HMGB_SSRP1_UBTF:0.680354694868;ELK1,4_GABP{A,B1}:0.667500230729;CDC5L:0.663343933415;IRF7:0.652070474381;TFDP1:0.622429171331;NRF1:0.585096058815;AHR_ARNT_ARNT2:0.581653769529;GFI1:0.574599888878;PAX3,7:0.574170945224;TEF:0.573329043052;MYOD1:0.571201323198;ARID5B:0.569502080707;FOXA2:0.539427014254;EVI1:0.523840797813;YY1:0.502217115135;ZNF143:0.490673606529;LHX3,4:0.47750981808;TEAD1:0.474589759014;FOXD3:0.465765649662;PBX1:0.44861467548;SP1:0.447806016695;HOXA9_MEIS1:0.404675919759;TAL1_TCF{3,4,12}:0.403865776003;HOX{A4,D4}:0.397145901006;IRF1,2:0.370735909172;NKX3-2:0.353240007434;TBX4,5:0.344756583188;FOXM1:0.321628287897;STAT5{A,B}:0.314285277762;FOXN1:0.313370122308;HSF1,2:0.302180920538;ZFP161:0.29957883493;NFKB1_REL_RELA:0.285679045705;UFEwm:0.273126196484;ZIC1..3:0.269307266086;XBP1:0.254828065436;POU1F1:0.247427763311;ATF5_CREB3:0.240414972835;HES1:0.217238451479;PAX4:0.201419211644;RREB1:0.196491238022;NR6A1:0.192384447429;EN1,2:0.183192156321;POU3F1..4:0.178423237935;HNF4A_NR2F1,2:0.177347528903;CEBPA,B_DDIT3:0.174926981114;KLF4:0.170258052237;RFX1:0.147976477939;ADNP_IRX_SIX_ZHX:0.141767331015;SNAI1..3:0.134620629763;FOS_FOS{B,L1}_JUN{B,D}:0.134483709571;FOXL1:0.129140870356;RXRA_VDR{dimer}:0.125070005735;ZBTB6:0.115393715041;CUX2:0.107127425453;RBPJ:0.0925240537995;RXR{A,B,G}:0.0898039987668;GFI1B:0.0794786450709;ONECUT1,2:0.0792565074716;FOXO1,3,4:0.0643732485212;IKZF2:0.0583683968026;FOXP3:0.0546083304683;SREBF1,2:0.0371281495484;DMAP1_NCOR{1,2}_SMARC:0.0309271361938;MZF1:0.0259682231547;ATF4:0.000175594846128;EBF1:-0.00238297117965;GTF2A1,2:-0.00639818273022;TOPORS:-0.0127722961734;PAX8:-0.0247688347448;MTF1:-0.0280089635862;BPTF:-0.028594718048;FOX{D1,D2}:-0.0297108988283;BACH2:-0.0297622667543;TBP:-0.0366415741001;GATA4:-0.0440576478132;ZNF148:-0.049285665736;FOSL2:-0.0514971318227;NFE2:-0.0625489091837;TLX2:-0.0654779516967;STAT2,4,6:-0.0703873538637;HOX{A5,B5}:-0.0749198584648;HOX{A6,A7,B6,B7}:-0.0790566557842;LMO2:-0.0927152778947;EP300:-0.107962271245;T:-0.116067346583;TLX1..3_NFIC{dimer}:-0.130761324543;MEF2{A,B,C,D}:-0.136396319818;TFAP2{A,C}:-0.151973025786;HLF:-0.153271625392;RUNX1..3:-0.161733412249;DBP:-0.172041878855;POU5F1:-0.176797872444;NR3C1:-0.177775280255;CRX:-0.183590513012;PATZ1:-0.184996707509;CREB1:-0.187972163951;NR1H4:-0.202158969107;HNF1A:-0.218374043621;RFX2..5_RFXANK_RFXAP:-0.230789554531;MED-1{core}:-0.2351415792;ALX1:-0.237978732238;POU2F1..3:-0.24157097285;SOX17:-0.242212064653;FOX{I1,J2}:-0.246567636517;XCPE1{core}:-0.267332946895;MAZ:-0.271557268437;TFAP2B:-0.27961600147;ZEB1:-0.28085456009;ZNF423:-0.284332695714;PAX5:-0.289434227218;ALX4:-0.290224781166;HIC1:-0.291078025915;LEF1_TCF7_TCF7L1,2:-0.294457009238;POU6F1:-0.298980422259;RORA:-0.300833617994;GTF2I:-0.303226692338;ELF1,2,4:-0.304154768259;NFE2L2:-0.312925378004;PAX1,9:-0.315764980437;MYBL2:-0.318898333599;ATF2:-0.323320883926;GZF1:-0.32774959833;NKX2-3_NKX2-5:-0.33081842122;NFIX:-0.334663184373;SOX5:-0.335640677952;SRF:-0.339409536108;PRDM1:-0.35302336497;FOX{F1,F2,J1}:-0.365027646002;PRRX1,2:-0.365642073737;TP53:-0.368589731144;MYFfamily:-0.36886997195;REST:-0.381522529861;OCT4_SOX2{dimer}:-0.389859199863;MTE{core}:-0.396423092219;NR5A1,2:-0.411185165679;ATF6:-0.421438793875;ESR1:-0.439601203753;PAX6:-0.493752658875;PAX2:-0.495161462166;IKZF1:-0.498081838604;SPIB:-0.506587600494;ESRRA:-0.507492138385;NANOG:-0.510368513569;HMGA1,2:-0.526822199576;MAFB:-0.528391510211;GLI1..3:-0.586056105326;SPI1:-0.635907513;TFCP2:-0.641165789239;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.670048340134;STAT1,3:-0.67272905764;NHLH1,2:-0.679165606217;GATA6:-0.711256230414;SOX{8,9,10}:-0.720830922755;HAND1,2:-0.798129006678;ETS1,2:-0.845709791156;NFE2L1:-0.865229141237;NFATC1..3:-0.871611522362;VSX1,2:-0.8738693268;JUN:-0.901183481395;NFIL3:-1.05180094055;GCM1,2:-1.05255939261;EGR1..3:-1.06036560375;SOX2:-1.18058680782;AR:-1.18571007094;ZNF238:-1.20353697584;TFAP4:-1.22980667054;TGIF1:-1.32247842907;NANOG{mouse}:-1.38971323245;HMX1:-1.55180752939;SMAD1..7,9:-1.88379582268;SPZ1:-1.99815042805
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10492-107B6;search_select_hide=table117:FF:10492-107B6
}}
}}

Latest revision as of 14:27, 3 June 2020

Name:transitional-cell carcinoma cell line:JMSU1
Species:Human (Homo sapiens)
Library ID:CNhs11261
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuebladder
dev stageNA
sexmale
age75
cell typeunclassifiable
cell lineJMSU1
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005744
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11261 CAGE DRX008029 DRR008901
Accession ID Hg19

Library idBAMCTSS
CNhs11261 DRZ000326 DRZ001711
Accession ID Hg38

Library idBAMCTSS
CNhs11261 DRZ011676 DRZ013061
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.159
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.519
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.044
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.0125
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.044
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0351
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.044
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.152
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.13
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0132
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.22
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.084
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.084
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.044
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.46
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.119
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11261

Jaspar motifP-value
MA0002.20.00658
MA0003.10.27
MA0004.10.0347
MA0006.10.66
MA0007.10.178
MA0009.10.219
MA0014.10.225
MA0017.10.0315
MA0018.20.764
MA0019.10.125
MA0024.16.5711e-5
MA0025.10.985
MA0027.10.621
MA0028.10.0882
MA0029.10.444
MA0030.10.932
MA0031.10.832
MA0035.20.109
MA0038.10.075
MA0039.20.155
MA0040.10.454
MA0041.10.264
MA0042.10.389
MA0043.10.0931
MA0046.10.0934
MA0047.20.102
MA0048.10.0358
MA0050.10.00613
MA0051.10.00688
MA0052.10.396
MA0055.10.0127
MA0057.10.652
MA0058.10.0129
MA0059.10.0448
MA0060.10.00501
MA0061.10.762
MA0062.20.408
MA0065.20.993
MA0066.10.368
MA0067.10.642
MA0068.10.336
MA0069.10.585
MA0070.10.208
MA0071.10.785
MA0072.10.28
MA0073.10.936
MA0074.10.731
MA0076.10.194
MA0077.10.978
MA0078.10.1
MA0079.20.686
MA0080.21.13294e-9
MA0081.10.147
MA0083.10.316
MA0084.10.862
MA0087.10.33
MA0088.10.325
MA0090.10.297
MA0091.10.00341
MA0092.10.209
MA0093.10.0132
MA0099.20.232
MA0100.10.0851
MA0101.10.66
MA0102.20.368
MA0103.10.683
MA0104.21.06785e-4
MA0105.10.648
MA0106.10.766
MA0107.10.957
MA0108.20.173
MA0111.10.624
MA0112.28.10839e-4
MA0113.10.0177
MA0114.10.999
MA0115.10.656
MA0116.10.159
MA0117.10.315
MA0119.10.466
MA0122.10.942
MA0124.10.907
MA0125.10.65
MA0131.10.644
MA0135.10.0409
MA0136.11.1118e-6
MA0137.20.072
MA0138.20.178
MA0139.10.292
MA0140.10.077
MA0141.10.271
MA0142.10.00735
MA0143.10.124
MA0144.10.139
MA0145.10.0739
MA0146.10.23
MA0147.12.17053e-4
MA0148.10.0773
MA0149.10.376
MA0150.10.333
MA0152.10.562
MA0153.10.982
MA0154.10.053
MA0155.10.254
MA0156.10.00975
MA0157.10.664
MA0159.10.517
MA0160.10.0767
MA0162.10.784
MA0163.10.47
MA0164.10.933
MA0258.10.0201
MA0259.10.183



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11261

Novel motifP-value
10.568
100.235
1000.153
1010.347
1020.965
1030.0161
1040.757
1050.874
1060.00221
1070.338
1080.449
1090.904
110.536
1100.881
1110.654
1120.0185
1130.0124
1140.166
1150.754
1160.846
1170.447
1180.388
1190.0886
120.799
1200.394
1210.224
1220.591
1230.911
1240.134
1250.928
1260.736
1270.303
1280.0158
1290.188
130.137
1300.436
1310.802
1320.546
1330.621
1340.0751
1350.00589
1360.043
1370.364
1380.629
1390.0483
140.39
1400.0149
1410.604
1420.465
1430.00573
1440.255
1450.377
1460.149
1470.941
1480.156
1490.0609
150.275
1500.886
1510.207
1520.0522
1530.568
1540.954
1550.46
1560.734
1570.8
1580.164
1590.25
160.521
1600.476
1610.845
1620.586
1630.168
1640.152
1650.193
1660.285
1670.88
1680.584
1690.0164
170.37
180.279
190.25
20.282
200.0352
210.053
220.0549
230.11
240.813
250.365
260.702
270.0282
280.385
290.418
30.678
300.583
310.132
320.0775
330.548
340.248
350.213
360.691
370.722
380.358
390.78
40.209
400.766
410.00183
420.756
430.176
440.575
450.122
460.0947
470.959
480.864
490.117
50.0395
500.506
510.363
520.203
530.517
540.306
550.0783
560.69
570.929
580.394
590.106
60.397
600.0496
610.353
620.129
630.865
640.612
650.149
660.417
670.605
680.323
690.109
70.451
700.113
710.833
720.483
730.19
740.796
750.484
760.674
770.338
780.694
790.0361
80.322
800.0724
810.339
820.00186
830.576
840.927
850.0057
860.571
870.219
880.992
890.00445
90.193
900.267
910.0336
920.151
930.541
940.0519
950.66
960.198
970.894
980.138
990.974



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11261


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)

UBERON: Anatomy
0000483 (epithelium)
0005910 (transitional epithelium)
0000479 (tissue)
0004119 (endoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0005911 (endo-epithelium)
0001062 (anatomical entity)
0000119 (cell layer)
0000486 (multilaminar epithelium)
0010317 (germ layer / neural crest derived structure)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0102869 (transitional cell carcinoma cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

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