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{{f5samples
{{f5samples
|F5samples=
|DRA_sample_Accession=CAGE@SAMD00004763
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000465,UBERON:0000479,UBERON:0001062,UBERON:0002384
|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00004763
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000037,CL:0000048,CL:0000051,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000542,CL:0000548,CL:0000566,CL:0000723,CL:0000738,CL:0000826,CL:0000837,CL:0000838,CL:0000945,CL:0000988,CL:0002031,CL:0002032,CL:0002087,CL:0002320,CL:0002371
|accession_numbers=CAGE;DRX007779;DRR008651;DRZ000076;DRZ001461;DRZ011426;DRZ012811
|ancestors_in_disease_facet=DOID:0050686,DOID:0060058,DOID:0060083,DOID:14566,DOID:162,DOID:2531,DOID:4
|accession_numbers_RNASeq=RNA-Seq;DRX057122;DRR062881;DRZ007957
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000945,CL:0000738,CL:0002087,CL:0002242,CL:0000255
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:2531,DOID:0060058,DOID:14566,DOID:0060083
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100104,FF:0100889,FF:0101561
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
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NF181!0.20!2.48!ZNF181;;chr19:11909329..11909394,+!p1@ZNF491!0.20!2.17!ZNF491;;chr15:56535468..56535521,-!p2@RFX7!0.20!1.86!RFX7;;chr2:74375058..74375069,-!p3@BOLA3!0.20!1.86!BOLA3;;chr16:30621615..30621660,-!p2@ZNF689!0.20!1.78!ZNF689;;chr10:97890262..97890298,+!p4@ZNF518A!0.20!1.70!ZNF518A;;chr14:64970427..64970450,-!p5@ZBTB25!0.20!1.70!ZBTB25;;chr18:42260059..42260132,+!p1@SETBP1!0.20!1.55!SETBP1;;chr18:74072572..74072588,-!p2@ZNF516!0.20!1.47!ZNF516;;chr5:88179195..88179224,-!p3@MEF2C!0.20!1.47!MEF2C;;chr12:56583297..56583304,-!p4@SMARCC2!0.20!1.39!SMARCC2;;chr17:46688334..46688385,-!p1@HOXB7!0.20!1.24!HOXB7;;chr18:51690935..51690957,-!p8@MBD2!0.20!1.24!MBD2;;chr19:12175504..12175519,+!p2@ZNF844!0.20!1.24!ZNF844;;chr19:58978463..58978476,+!p2@ZNF324!0.20!1.24!ZNF324;;chr7:21467746..21467758,+!p4@SP4!0.20!1.16!SP4;;chr16:88636875..88636886,+!p3@ZC3H18!0.20!1.16!ZC3H18;;chr12:80084137..80084165,-!p10@PAWR!0.20!1.01!PAWR;;chr16:29818992..29819023,+!p24@MAZ!0.20!0.93!MAZ;;chr18:45457558..45457570,-!p9@SMAD2!0.20!0.93!SMAD2;;chr2:74374995..74375055,-!p1@BOLA3!0.19!62.59!BOLA3;;chr19:33864600..33864732,+!p1@CEBPG!0.19!38.50!CEBPG;;chr4:467892..467963,-!p1@ABCA11P,p1@ZNF721!0.19!35.17!ZNF721;;chr2:48541789..48541874,+!p1@FOXN2!0.19!31.30!FOXN2;;chr11:62369291..62369351,-!p1@MTA2!0.19!25.80!MTA2;;chr20:50808290..50808328,-!p1@ZFP64!0.19!15.65!ZFP64;;chr20:23342783..23342857,+!p1@GZF1!0.19!12.16!GZF1;;chr9:130186653..130186734,+!p1@ZNF79!0.19!9.76!ZNF79;;chr6:43138999..43139017,+!p2@SRF!0.19!7.59!SRF;;chr7:150076406..150076456,+!p1@ZNF775!0.19!5.73!ZNF775;;chr18:53257027..53257052,-!p3@TCF4!0.19!4.88!TCF4;;chr16:67062996..67063016,+!p3@CBFB!0.19!3.49!CBFB;;chr3:71007770..71007789,-!p9@FOXP1!0.19!2.87!FOXP1;;chr12:133758115..133758138,+!p3@ZNF268!0.19!2.56!ZNF268;;chr20:42143077..42143126,+!p1@L3MBTL1!0.19!2.09!L3MBTL;;chr1:35657108..35657135,-!p5@SFPQ!0.19!1.86!SFPQ;;chr5:43065197..43065244,+!p5@ZNF131!0.19!1.86!ZNF131;;chr7:148844581..148844606,+!p2@ZNF398!0.19!1.55!ZNF398;;chr2:214016314..214016343,-!p2@IKZF2!0.19!1.55!IKZF2;;chr2:231084723..231084734,-!p4@SP110!0.19!1.47!SP110;;chr14:64970451..64970473,-!p6@ZBTB25!0.19!1.47!ZBTB25;;chr12:432372..432377,-!p3@KDM5A!0.19!1.39!KDM5A;;chr3:33482052..33482116,-!p2@UBP1!0.19!1.32!UBP1;;chr14:64970593..64970627,+!p5@ZBTB1!0.19!1.24!ZBTB1;;chr19:4066763..4066779,-!p5@ZBTB7A!0.19!1.24!ZBTB7A;;chr5:142782823..142782854,-!p3@NR3C1!0.19!1.16!NR3C1;;chr19:12444491..12444517,-!p4@ZNF563!0.19!1.08!ZNF563;;chr4:1873216..1873238,+!p5@WHSC1!0.19!1.01!WHSC1;;chr17:61919812..61919833,-!p6@SMARCD2!0.19!0.93!SMARCD2;;chr1:67390715..67390733,+!p7@MIER1!0.19!0.93!MIER1;;chrX:48901030..48901050,-!p4@TFE3!0.19!0.93!TFE3;;chr10:97889754..97889765,+!p8@ZNF518A!0.19!0.85!ZNF518A;;chr8:28748157..28748175,+!p3@HMBOX1!0.19!0.85!HMBOX1;;chr12:80083689..80083706,-!p16@PAWR!0.19!0.77!PAWR;;chr13:37393324..37393335,+!p2@RFXAP!0.19!0.77!RFXAP;;chr10:31607335..31607354,+!p5@ZEB1!0.19!0.54!ZEB1;;chr11:62369084..62369093,-!p9@MTA2!0.19!0.54!MTA2;;chr14:58797974..58798011,+!p3@ARID4A!0.19!0.54!ARID4A;;chr14:64971893..64971928,-!p8@ZBTB25!0.19!0.54!ZBTB25;;chr2:61108878..61108891,+!p5@REL!0.19!0.54!REL;;chr3:178789220..178789255,-!p6@ZMAT3!0.19!0.54!ZMAT3;;chr4:87857538..87857549,+!p19@AFF1!0.19!0.54!AFF1;;chr4:87927888..87927912,+!p18@AFF1!0.19!0.54!AFF1;;chr16:88752861..88752884,-!p2@SNAI3!0.19!0.54!SNAI3;;chr17:48045917..48045977,+!p1@DLX4!0.19!0.54!DLX4;;chr18:53089493..53089517,-!p15@TCF4!0.19!0.54!TCF4;;chr18:53089521..53089533,-!p22@TCF4!0.19!0.54!TCF4;;chr19:13213691..13213696,-!p9@LYL1!0.19!0.54!LYL1;;chr19:37096126..37096137,-!p4@ZNF529!0.19!0.54!ZNF529;;chr5:134369222..134369237,-!p8@PITX1!0.19!0.54!PITX1;;chr5:134370033..134370042,-!p5@PITX1!0.19!0.54!PITX1;;
|ffid_belonging_in_development=CL:0000134,CL:0000051
|fonse_cell_line=FF:0100104
|fonse_cell_line=FF:0100104
|fonse_cell_line_closure=FF:0100104
|fonse_cell_line_closure=FF:0100104
Line 35: Line 43:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/Burkitt%2527s%2520lymphoma%2520cell%2520line%253aDAUDI.CNhs10739.10422-106C8.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/Burkitt%2527s%2520lymphoma%2520cell%2520line%253aDAUDI.CNhs10739.10422-106C8.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/Burkitt%2527s%2520lymphoma%2520cell%2520line%253aDAUDI.CNhs10739.10422-106C8.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/Burkitt%2527s%2520lymphoma%2520cell%2520line%253aDAUDI.CNhs10739.10422-106C8.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/Burkitt%2527s%2520lymphoma%2520cell%2520line%253aDAUDI.CNhs10739.10422-106C8.hg38.nobarcode.ctss.bed.gz
|id=FF:10422-106C8
|id=FF:10422-106C8
|is_a=EFO:0002091;;FF:0000003;;FF:0000210;;FF:0101561
|is_a=EFO:0002091;;FF:0000210;;FF:0101561
|is_obsolete=
|library_id=CNhs10739
|library_id_phase_based=2:CNhs10739
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10422
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10422
|name=Burkitt's lymphoma cell line:DAUDI
|name=Burkitt's lymphoma cell line:DAUDI
|namespace=FANTOM5
|namespace=FANTOM5
Line 42: Line 62:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs10739,LSID692,release008,COMPLETED
|profile_hcage=CNhs10739,LSID692,release008,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=106
|rna_box=106
|rna_catalog_number=
|rna_catalog_number=
Line 56: Line 79:
|rna_tube_id=106C8
|rna_tube_id=106C8
|rna_weight_ug=28.671
|rna_weight_ug=28.671
|rnaseq_library_id=RDhi10065
|sample_age=16
|sample_age=16
|sample_category=cell lines
|sample_cell_catalog=RCB1640
|sample_cell_catalog=RCB1640
|sample_cell_line=DAUDI
|sample_cell_line=DAUDI
Line 69: Line 94:
|sample_ethnicity=B
|sample_ethnicity=B
|sample_experimental_condition=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.14210974811068e-255!GO:0043227;membrane-bound organelle;2.1442436151548e-232!GO:0043231;intracellular membrane-bound organelle;4.79344541805793e-232!GO:0043226;organelle;2.62526165027456e-220!GO:0043229;intracellular organelle;7.77742708306543e-220!GO:0044422;organelle part;5.34446479372598e-162!GO:0044446;intracellular organelle part;1.02934740790584e-160!GO:0005737;cytoplasm;5.07184456066651e-141!GO:0032991;macromolecular complex;6.33000561805616e-136!GO:0005634;nucleus;3.83925809681898e-130!GO:0044237;cellular metabolic process;1.82023635333199e-116!GO:0044238;primary metabolic process;2.0144298040327e-111!GO:0044428;nuclear part;1.31307453911918e-110!GO:0043170;macromolecule metabolic process;9.7460714140458e-107!GO:0030529;ribonucleoprotein complex;2.17167862891389e-104!GO:0044444;cytoplasmic part;3.37501265438133e-100!GO:0003723;RNA binding;9.61902947556683e-99!GO:0043233;organelle lumen;4.03257104983669e-91!GO:0031974;membrane-enclosed lumen;4.03257104983669e-91!GO:0005739;mitochondrion;1.62249022155273e-74!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.92741030723743e-74!GO:0043283;biopolymer metabolic process;4.55845923594646e-72!GO:0043234;protein complex;6.18606935815922e-72!GO:0006396;RNA processing;4.92174686908898e-70!GO:0010467;gene expression;2.19476793025385e-67!GO:0006412;translation;1.02957020390107e-66!GO:0031981;nuclear lumen;1.61716975503384e-65!GO:0006259;DNA metabolic process;6.47581823265371e-64!GO:0005840;ribosome;1.24018326598273e-60!GO:0005515;protein binding;2.79444475770266e-54!GO:0016071;mRNA metabolic process;3.46913034164928e-54!GO:0003676;nucleic acid binding;3.29089067108578e-53!GO:0003735;structural constituent of ribosome;6.82554923565628e-52!GO:0006397;mRNA processing;8.53268249113953e-48!GO:0044429;mitochondrial part;1.37461551050213e-46!GO:0019538;protein metabolic process;4.15261767178458e-46!GO:0033279;ribosomal subunit;4.15261767178458e-46!GO:0008380;RNA splicing;1.38081384545218e-45!GO:0009059;macromolecule biosynthetic process;4.60677871746472e-45!GO:0031967;organelle envelope;4.60677871746472e-45!GO:0031975;envelope;1.06219170414932e-44!GO:0044249;cellular biosynthetic process;5.8113497981999e-44!GO:0044267;cellular protein metabolic process;5.20801772683036e-43!GO:0005654;nucleoplasm;1.19027619344952e-42!GO:0006974;response to DNA damage stimulus;4.02909385165197e-42!GO:0022613;ribonucleoprotein complex biogenesis and assembly;8.2725847837114e-42!GO:0044260;cellular macromolecule metabolic process;8.28697265483556e-42!GO:0009058;biosynthetic process;4.99902384367664e-41!GO:0007049;cell cycle;9.4798375840356e-41!GO:0031090;organelle membrane;1.1130073231408e-38!GO:0006996;organelle organization and biogenesis;1.88993189798721e-38!GO:0043228;non-membrane-bound organelle;3.79870258489654e-38!GO:0043232;intracellular non-membrane-bound organelle;3.79870258489654e-38!GO:0065003;macromolecular complex assembly;5.45298979014132e-38!GO:0006281;DNA repair;1.6176774338991e-37!GO:0005694;chromosome;2.58479884781026e-35!GO:0022402;cell cycle process;9.47942407332556e-35!GO:0033036;macromolecule localization;1.34677742719329e-34!GO:0016043;cellular component organization and biogenesis;3.77867879936546e-34!GO:0015031;protein transport;1.66734298990531e-33!GO:0016070;RNA metabolic process;2.32558779606486e-33!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.59625347197174e-33!GO:0022607;cellular component assembly;5.14006818626044e-33!GO:0005829;cytosol;5.14006818626044e-33!GO:0005681;spliceosome;1.08161437218819e-32!GO:0000278;mitotic cell cycle;3.46524728593149e-32!GO:0044451;nucleoplasm part;1.5276978371879e-31!GO:0000166;nucleotide binding;1.53626893760773e-31!GO:0044427;chromosomal part;7.23866260328979e-31!GO:0022403;cell cycle phase;8.84742954157715e-31!GO:0045184;establishment of protein localization;2.24559171462248e-30!GO:0046907;intracellular transport;4.03225946849769e-30!GO:0008104;protein localization;7.94944905370074e-30!GO:0044445;cytosolic part;1.98199578662667e-29!GO:0000087;M phase of mitotic cell cycle;1.39890547210866e-28!GO:0007067;mitosis;4.5245423340409e-28!GO:0009719;response to endogenous stimulus;7.21937775183941e-28!GO:0000279;M phase;1.00801046199233e-27!GO:0019866;organelle inner membrane;1.83079157194944e-27!GO:0005740;mitochondrial envelope;1.83079157194944e-27!GO:0051276;chromosome organization and biogenesis;3.00919335007906e-27!GO:0006886;intracellular protein transport;4.57870335533333e-26!GO:0031966;mitochondrial membrane;1.11412244799763e-25!GO:0005743;mitochondrial inner membrane;1.15669923273419e-25!GO:0005730;nucleolus;3.07006571118968e-25!GO:0006260;DNA replication;3.28435273522602e-25!GO:0005524;ATP binding;4.99930265964947e-24!GO:0015935;small ribosomal subunit;5.62573583139042e-24!GO:0032559;adenyl ribonucleotide binding;7.440215359106e-24!GO:0022618;protein-RNA complex assembly;1.6209328559227e-23!GO:0017111;nucleoside-triphosphatase activity;1.92889181956048e-23!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.17089317068718e-23!GO:0015934;large ribosomal subunit;2.53656937815886e-23!GO:0016817;hydrolase activity, acting on acid anhydrides;2.74545495090048e-23!GO:0031980;mitochondrial lumen;3.35442934673914e-23!GO:0005759;mitochondrial matrix;3.35442934673914e-23!GO:0016462;pyrophosphatase activity;3.68810729078608e-23!GO:0030554;adenyl nucleotide binding;5.20944259078186e-23!GO:0051301;cell division;3.36308171410174e-22!GO:0006119;oxidative phosphorylation;3.89977048910328e-22!GO:0016874;ligase activity;5.35895323726389e-22!GO:0016887;ATPase activity;7.23408256239839e-22!GO:0032553;ribonucleotide binding;1.02868516834413e-21!GO:0032555;purine ribonucleotide binding;1.02868516834413e-21!GO:0044265;cellular macromolecule catabolic process;1.56107635964277e-21!GO:0006512;ubiquitin cycle;1.68114154255052e-21!GO:0044455;mitochondrial membrane part;1.81614944927189e-21!GO:0042623;ATPase activity, coupled;3.44041153512974e-21!GO:0017076;purine nucleotide binding;3.54884112843816e-21!GO:0008135;translation factor activity, nucleic acid binding;1.10754040001423e-20!GO:0051649;establishment of cellular localization;2.34403978912976e-20!GO:0051641;cellular localization;9.73435923029799e-20!GO:0006325;establishment and/or maintenance of chromatin architecture;3.70019268555348e-19!GO:0031965;nuclear membrane;8.83304504206361e-19!GO:0019941;modification-dependent protein catabolic process;9.74530381474469e-19!GO:0043632;modification-dependent macromolecule catabolic process;9.74530381474469e-19!GO:0042254;ribosome biogenesis and assembly;1.17660840721789e-18!GO:0006511;ubiquitin-dependent protein catabolic process;1.24591610264985e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;1.28724679528887e-18!GO:0006323;DNA packaging;1.62447428827356e-18!GO:0044257;cellular protein catabolic process;3.41332894465363e-18!GO:0000502;proteasome complex (sensu Eukaryota);6.29998430247394e-18!GO:0005635;nuclear envelope;7.53592937911556e-18!GO:0044453;nuclear membrane part;9.21545421551499e-18!GO:0006457;protein folding;1.24322404735229e-17!GO:0043285;biopolymer catabolic process;1.42483223510025e-17!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.59483682748542e-17!GO:0005746;mitochondrial respiratory chain;2.6621629765894e-17!GO:0005761;mitochondrial ribosome;3.39794223052404e-17!GO:0000313;organellar ribosome;3.39794223052404e-17!GO:0008134;transcription factor binding;4.85620773704977e-17!GO:0000398;nuclear mRNA splicing, via spliceosome;6.12974960661207e-17!GO:0000375;RNA splicing, via transesterification reactions;6.12974960661207e-17!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;6.12974960661207e-17!GO:0016604;nuclear body;6.30548469088256e-17!GO:0004386;helicase activity;7.45364217513408e-17!GO:0009057;macromolecule catabolic process;1.02424892566885e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.34194195660227e-16!GO:0044248;cellular catabolic process;2.1704255134054e-16!GO:0005643;nuclear pore;3.0438254526726e-16!GO:0006403;RNA localization;5.60862316415139e-16!GO:0050657;nucleic acid transport;7.11309292580093e-16!GO:0051236;establishment of RNA localization;7.11309292580093e-16!GO:0050658;RNA transport;7.11309292580093e-16!GO:0012505;endomembrane system;1.77940635285247e-15!GO:0006413;translational initiation;1.96876664239799e-15!GO:0050136;NADH dehydrogenase (quinone) activity;2.03566034424994e-15!GO:0003954;NADH dehydrogenase activity;2.03566034424994e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.03566034424994e-15!GO:0006399;tRNA metabolic process;2.0711158273563e-15!GO:0003743;translation initiation factor activity;2.74022948274837e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.83356099188386e-15!GO:0016568;chromatin modification;3.05291135940151e-15!GO:0051726;regulation of cell cycle;1.39946397890382e-14!GO:0000074;regulation of progression through cell cycle;2.31207679252645e-14!GO:0042775;organelle ATP synthesis coupled electron transport;4.37908140431015e-14!GO:0042773;ATP synthesis coupled electron transport;4.37908140431015e-14!GO:0046930;pore complex;4.82180316849971e-14!GO:0008026;ATP-dependent helicase activity;5.18715979592777e-14!GO:0043412;biopolymer modification;5.40214988805405e-14!GO:0006605;protein targeting;1.75782471542994e-13!GO:0016779;nucleotidyltransferase activity;2.09885876906473e-13!GO:0051028;mRNA transport;2.099858058772e-13!GO:0030964;NADH dehydrogenase complex (quinone);2.17572476977538e-13!GO:0045271;respiratory chain complex I;2.17572476977538e-13!GO:0005747;mitochondrial respiratory chain complex I;2.17572476977538e-13!GO:0065002;intracellular protein transport across a membrane;2.28988266935272e-13!GO:0000775;chromosome, pericentric region;2.32405348289187e-13!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.69806944922163e-13!GO:0000785;chromatin;2.85373558500109e-13!GO:0006446;regulation of translational initiation;3.21936303473309e-13!GO:0016607;nuclear speck;4.10901703879954e-13!GO:0030163;protein catabolic process;4.37340579815814e-13!GO:0006261;DNA-dependent DNA replication;4.54105723320248e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.85541727675531e-13!GO:0006364;rRNA processing;9.50503473216736e-13!GO:0051082;unfolded protein binding;1.07394950359008e-12!GO:0006913;nucleocytoplasmic transport;1.31274374626508e-12!GO:0016072;rRNA metabolic process;1.49801770553645e-12!GO:0043566;structure-specific DNA binding;1.70091600098982e-12!GO:0003712;transcription cofactor activity;1.9086825796172e-12!GO:0051169;nuclear transport;3.36619824286762e-12!GO:0065004;protein-DNA complex assembly;3.69889207576245e-12!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;5.56329873524787e-12!GO:0006333;chromatin assembly or disassembly;1.48448958954693e-11!GO:0003697;single-stranded DNA binding;1.56833435697683e-11!GO:0051186;cofactor metabolic process;2.37558272306897e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.46183453388749e-11!GO:0006464;protein modification process;3.9468030663521e-11!GO:0009259;ribonucleotide metabolic process;4.4294449468223e-11!GO:0043687;post-translational protein modification;8.51127662945199e-11!GO:0006163;purine nucleotide metabolic process;8.70105550886124e-11!GO:0048770;pigment granule;9.80887589862188e-11!GO:0042470;melanosome;9.80887589862188e-11!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.71522317993929e-10!GO:0004812;aminoacyl-tRNA ligase activity;1.71522317993929e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.71522317993929e-10!GO:0043038;amino acid activation;2.81661578587934e-10!GO:0006418;tRNA aminoacylation for protein translation;2.81661578587934e-10!GO:0043039;tRNA aminoacylation;2.81661578587934e-10!GO:0006164;purine nucleotide biosynthetic process;2.82779532673567e-10!GO:0006732;coenzyme metabolic process;3.38385653084225e-10!GO:0006310;DNA recombination;3.39060540993293e-10!GO:0000075;cell cycle checkpoint;3.96508402165232e-10!GO:0008639;small protein conjugating enzyme activity;5.28157217346749e-10!GO:0005657;replication fork;5.61753827909472e-10!GO:0009260;ribonucleotide biosynthetic process;6.3847923572734e-10!GO:0005819;spindle;7.61575225838167e-10!GO:0017038;protein import;9.82227512078927e-10!GO:0004842;ubiquitin-protein ligase activity;1.17678070763305e-09!GO:0016787;hydrolase activity;1.19707741492632e-09!GO:0009055;electron carrier activity;1.32537109127933e-09!GO:0015630;microtubule cytoskeleton;1.37805286548183e-09!GO:0006461;protein complex assembly;1.37805286548183e-09!GO:0005839;proteasome core complex (sensu Eukaryota);1.43994207842628e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.65268611626933e-09!GO:0009150;purine ribonucleotide metabolic process;1.890747578073e-09!GO:0019787;small conjugating protein ligase activity;2.79965104190596e-09!GO:0005783;endoplasmic reticulum;2.93651459799065e-09!GO:0015078;hydrogen ion transmembrane transporter activity;3.07343772874767e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.84669385475172e-09!GO:0044432;endoplasmic reticulum part;4.88396311244679e-09!GO:0009152;purine ribonucleotide biosynthetic process;6.51701044395155e-09!GO:0019829;cation-transporting ATPase activity;7.06611921658229e-09!GO:0016740;transferase activity;7.22757789499505e-09!GO:0005813;centrosome;7.30446684190932e-09!GO:0016741;transferase activity, transferring one-carbon groups;7.43104223505925e-09!GO:0004298;threonine endopeptidase activity;8.22491630833076e-09!GO:0008094;DNA-dependent ATPase activity;8.72135599845437e-09!GO:0009056;catabolic process;8.79174764169856e-09!GO:0019222;regulation of metabolic process;9.50071786017647e-09!GO:0006366;transcription from RNA polymerase II promoter;1.01281583172485e-08!GO:0005815;microtubule organizing center;1.44241967190061e-08!GO:0008168;methyltransferase activity;1.59116546339777e-08!GO:0012501;programmed cell death;1.84350047461253e-08!GO:0048193;Golgi vesicle transport;1.92160925584149e-08!GO:0003899;DNA-directed RNA polymerase activity;1.97590512521027e-08!GO:0006915;apoptosis;1.99022547156579e-08!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.99459944886142e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.0154386656702e-08!GO:0008565;protein transporter activity;3.31128005005226e-08!GO:0045333;cellular respiration;3.45208176888741e-08!GO:0030532;small nuclear ribonucleoprotein complex;3.52853417979939e-08!GO:0006302;double-strand break repair;4.5102523545977e-08!GO:0007051;spindle organization and biogenesis;5.03894070756258e-08!GO:0005789;endoplasmic reticulum membrane;5.78424232187745e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;9.07987271623874e-08!GO:0016881;acid-amino acid ligase activity;9.12966102535098e-08!GO:0009060;aerobic respiration;9.39806923217001e-08!GO:0032446;protein modification by small protein conjugation;1.01228543223397e-07!GO:0007059;chromosome segregation;1.10675148289084e-07!GO:0051325;interphase;1.13010749936595e-07!GO:0051329;interphase of mitotic cell cycle;1.2308015372427e-07!GO:0003713;transcription coactivator activity;1.33200468655245e-07!GO:0031323;regulation of cellular metabolic process;1.40530319291522e-07!GO:0015986;ATP synthesis coupled proton transport;1.50296640939293e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.50296640939293e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.61908211741445e-07!GO:0016567;protein ubiquitination;2.14795485253742e-07!GO:0000245;spliceosome assembly;2.22809775109748e-07!GO:0009141;nucleoside triphosphate metabolic process;2.29325400513301e-07!GO:0009199;ribonucleoside triphosphate metabolic process;2.50380813755921e-07!GO:0004518;nuclease activity;2.80326577686836e-07!GO:0016469;proton-transporting two-sector ATPase complex;2.92006074622409e-07!GO:0031497;chromatin assembly;4.15662860983068e-07!GO:0045259;proton-transporting ATP synthase complex;4.22998880657242e-07!GO:0009142;nucleoside triphosphate biosynthetic process;4.38122365448006e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.38122365448006e-07!GO:0051052;regulation of DNA metabolic process;4.47531784265457e-07!GO:0008219;cell death;4.85522420863295e-07!GO:0016265;death;4.85522420863295e-07!GO:0051246;regulation of protein metabolic process;4.8814523774195e-07!GO:0046034;ATP metabolic process;4.89938838710932e-07!GO:0006334;nucleosome assembly;5.03485562420948e-07!GO:0003690;double-stranded DNA binding;5.21214037370783e-07!GO:0050794;regulation of cellular process;5.63466994056946e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.87045940886493e-07!GO:0009144;purine nucleoside triphosphate metabolic process;5.87045940886493e-07!GO:0006754;ATP biosynthetic process;6.05216990383758e-07!GO:0006753;nucleoside phosphate metabolic process;6.05216990383758e-07!GO:0016772;transferase activity, transferring phosphorus-containing groups;6.31231408766859e-07!GO:0003684;damaged DNA binding;6.35043535766865e-07!GO:0003682;chromatin binding;6.48058749881538e-07!GO:0006752;group transfer coenzyme metabolic process;7.63844546678758e-07!GO:0007005;mitochondrion organization and biogenesis;8.29552657664032e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.05961739658046e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.05961739658046e-06!GO:0051188;cofactor biosynthetic process;1.10122107697641e-06!GO:0000151;ubiquitin ligase complex;1.16088522290775e-06!GO:0003724;RNA helicase activity;1.19144627170126e-06!GO:0006099;tricarboxylic acid cycle;1.21255759441724e-06!GO:0046356;acetyl-CoA catabolic process;1.21255759441724e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.22322666222128e-06!GO:0006350;transcription;1.2941509801247e-06!GO:0043623;cellular protein complex assembly;1.32909968225218e-06!GO:0006084;acetyl-CoA metabolic process;1.32909968225218e-06!GO:0009117;nucleotide metabolic process;1.57160454630521e-06!GO:0016310;phosphorylation;1.63725223894789e-06!GO:0006793;phosphorus metabolic process;1.70276595824513e-06!GO:0006796;phosphate metabolic process;1.70276595824513e-06!GO:0008033;tRNA processing;1.84096220233972e-06!GO:0051170;nuclear import;1.9552833647632e-06!GO:0000776;kinetochore;2.03301636730847e-06!GO:0065009;regulation of a molecular function;2.09444565659817e-06!GO:0007088;regulation of mitosis;2.13242666550917e-06!GO:0016563;transcription activator activity;2.41078476420485e-06!GO:0051168;nuclear export;2.75073526606276e-06!GO:0044452;nucleolar part;3.08955221933707e-06!GO:0006401;RNA catabolic process;3.44911912806194e-06!GO:0005667;transcription factor complex;3.83344514040666e-06!GO:0006352;transcription initiation;4.28381649512173e-06!GO:0006606;protein import into nucleus;4.29124127462299e-06!GO:0009108;coenzyme biosynthetic process;4.41281841660388e-06!GO:0005762;mitochondrial large ribosomal subunit;4.42128965049524e-06!GO:0000315;organellar large ribosomal subunit;4.42128965049524e-06!GO:0019899;enzyme binding;5.09698244775021e-06!GO:0030880;RNA polymerase complex;5.12119252072409e-06!GO:0003678;DNA helicase activity;6.23866342421585e-06!GO:0005794;Golgi apparatus;6.28475121667378e-06!GO:0003677;DNA binding;6.41930856291861e-06!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;7.17257120891256e-06!GO:0015399;primary active transmembrane transporter activity;7.17257120891256e-06!GO:0010468;regulation of gene expression;9.18243697451342e-06!GO:0009109;coenzyme catabolic process;9.53378100266017e-06!GO:0006613;cotranslational protein targeting to membrane;1.00700413808998e-05!GO:0042981;regulation of apoptosis;1.08173868474411e-05!GO:0004527;exonuclease activity;1.13265250226952e-05!GO:0016251;general RNA polymerase II transcription factor activity;1.13866650304263e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;1.15935956843984e-05!GO:0055029;nuclear DNA-directed RNA polymerase complex;1.26789112792754e-05!GO:0000428;DNA-directed RNA polymerase complex;1.26789112792754e-05!GO:0003729;mRNA binding;1.28540943238851e-05!GO:0043067;regulation of programmed cell death;1.43001956475623e-05!GO:0006888;ER to Golgi vesicle-mediated transport;1.4787386628522e-05!GO:0051427;hormone receptor binding;1.50729122810295e-05!GO:0000314;organellar small ribosomal subunit;1.5873479581122e-05!GO:0005763;mitochondrial small ribosomal subunit;1.5873479581122e-05!GO:0016363;nuclear matrix;1.97304809123851e-05!GO:0006402;mRNA catabolic process;1.99087708562793e-05!GO:0031072;heat shock protein binding;2.12997999542075e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;2.1993366177591e-05!GO:0007093;mitotic cell cycle checkpoint;2.36781754968098e-05!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.82903431222236e-05!GO:0006417;regulation of translation;2.84978050417813e-05!GO:0035257;nuclear hormone receptor binding;3.08783689132475e-05!GO:0006383;transcription from RNA polymerase III promoter;3.08783689132475e-05!GO:0031324;negative regulation of cellular metabolic process;3.10466221354988e-05!GO:0030120;vesicle coat;3.18396153299959e-05!GO:0030662;coated vesicle membrane;3.18396153299959e-05!GO:0016564;transcription repressor activity;3.61077979903829e-05!GO:0006284;base-excision repair;3.79052254182562e-05!GO:0045786;negative regulation of progression through cell cycle;3.93768211488115e-05!GO:0048475;coated membrane;4.22882892478862e-05!GO:0030117;membrane coat;4.22882892478862e-05!GO:0000228;nuclear chromosome;4.31593984950418e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.86578830671889e-05!GO:0043681;protein import into mitochondrion;5.25839116490045e-05!GO:0000079;regulation of cyclin-dependent protein kinase activity;5.9821374002418e-05!GO:0043021;ribonucleoprotein binding;6.57545615715135e-05!GO:0008186;RNA-dependent ATPase activity;7.59993557425305e-05!GO:0043492;ATPase activity, coupled to movement of substances;7.63593490680175e-05!GO:0032259;methylation;8.01163919749794e-05!GO:0007052;mitotic spindle organization and biogenesis;8.62583325617511e-05!GO:0006091;generation of precursor metabolites and energy;8.6670209178839e-05!GO:0006289;nucleotide-excision repair;8.92803904573861e-05!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000107817109309491!GO:0031326;regulation of cellular biosynthetic process;0.000108054695886432!GO:0051187;cofactor catabolic process;0.000121545940680445!GO:0006405;RNA export from nucleus;0.000124824150894448!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000134633048868689!GO:0032508;DNA duplex unwinding;0.000137314790055668!GO:0032392;DNA geometric change;0.000137314790055668!GO:0006414;translational elongation;0.000144807908233622!GO:0006367;transcription initiation from RNA polymerase II promoter;0.000147691968279007!GO:0003714;transcription corepressor activity;0.000149385337975808!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00015306194620542!GO:0008276;protein methyltransferase activity;0.000158552364803025!GO:0043596;nuclear replication fork;0.000165935773407151!GO:0032200;telomere organization and biogenesis;0.000165935773407151!GO:0000723;telomere maintenance;0.000165935773407151!GO:0050790;regulation of catalytic activity;0.000178977739219225!GO:0022890;inorganic cation transmembrane transporter activity;0.000179764126780279!GO:0006270;DNA replication initiation;0.000189896028600465!GO:0005793;ER-Golgi intermediate compartment;0.000191458278251171!GO:0006612;protein targeting to membrane;0.000203780601824688!GO:0000049;tRNA binding;0.000222645656325403!GO:0031570;DNA integrity checkpoint;0.00022866386556617!GO:0004004;ATP-dependent RNA helicase activity;0.000238365419907767!GO:0006268;DNA unwinding during replication;0.000240542261184917!GO:0000819;sister chromatid segregation;0.000243779679536403!GO:0000786;nucleosome;0.000252736571712676!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000267118408992343!GO:0016192;vesicle-mediated transport;0.000269199646240548!GO:0000070;mitotic sister chromatid segregation;0.00027842020397299!GO:0032774;RNA biosynthetic process;0.00031585490026685!GO:0003711;transcription elongation regulator activity;0.00036595901862535!GO:0043414;biopolymer methylation;0.00036595901862535!GO:0003887;DNA-directed DNA polymerase activity;0.000373186159104141!GO:0005885;Arp2/3 protein complex;0.000378293150464595!GO:0009165;nucleotide biosynthetic process;0.000387910655072092!GO:0051252;regulation of RNA metabolic process;0.000392162952523301!GO:0006275;regulation of DNA replication;0.000404695843804438!GO:0009112;nucleobase metabolic process;0.000414391043573696!GO:0006351;transcription, DNA-dependent;0.000417193320308993!GO:0009451;RNA modification;0.000427059024440082!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000442805838894814!GO:0009889;regulation of biosynthetic process;0.000446607390999152!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000469245667524123!GO:0005876;spindle microtubule;0.000481879299976234!GO:0000059;protein import into nucleus, docking;0.000495594548453636!GO:0008632;apoptotic program;0.000495594548453636!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000506314626961597!GO:0004674;protein serine/threonine kinase activity;0.000546984942039387!GO:0008408;3'-5' exonuclease activity;0.00056009349437383!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.000563681485724889!GO:0016859;cis-trans isomerase activity;0.00060044222329863!GO:0006950;response to stress;0.00062396958502552!GO:0042770;DNA damage response, signal transduction;0.000705512377532998!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000718256563119097!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.000776976243107596!GO:0031124;mRNA 3'-end processing;0.000781149688588148!GO:0015992;proton transport;0.000897284598088477!GO:0015631;tubulin binding;0.000927492871604985!GO:0016481;negative regulation of transcription;0.000935707390118768!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000949342154431297!GO:0005684;U2-dependent spliceosome;0.000950997239104279!GO:0009892;negative regulation of metabolic process;0.000955173951611437!GO:0006520;amino acid metabolic process;0.000957079008075297!GO:0006338;chromatin remodeling;0.000958758481658497!GO:0043601;nuclear replisome;0.000965167923766233!GO:0030894;replisome;0.000965167923766233!GO:0045449;regulation of transcription;0.000980927544817026!GO:0006818;hydrogen transport;0.000992181506451448!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00103925399385251!GO:0005669;transcription factor TFIID complex;0.00104524205517616!GO:0000077;DNA damage checkpoint;0.00105680295750211!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.00107175533497805!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00110221333463214!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00110221333463214!GO:0000725;recombinational repair;0.00114778565775819!GO:0000724;double-strand break repair via homologous recombination;0.00114778565775819!GO:0005048;signal sequence binding;0.00114990332391596!GO:0051540;metal cluster binding;0.00116442555254017!GO:0051536;iron-sulfur cluster binding;0.00116442555254017!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00117109510352252!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00117109510352252!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00117109510352252!GO:0051539;4 iron, 4 sulfur cluster binding;0.00119068866067317!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.00122736256137313!GO:0050789;regulation of biological process;0.00124403980954473!GO:0006144;purine base metabolic process;0.00125367662587131!GO:0016853;isomerase activity;0.00126782570681299!GO:0000287;magnesium ion binding;0.00128549127419983!GO:0000781;chromosome, telomeric region;0.00130953789386022!GO:0006626;protein targeting to mitochondrion;0.00132994686580191!GO:0005798;Golgi-associated vesicle;0.00140626605553148!GO:0004536;deoxyribonuclease activity;0.00141548864580469!GO:0000922;spindle pole;0.00146992968618116!GO:0006730;one-carbon compound metabolic process;0.00149913502331112!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00152066842858613!GO:0004003;ATP-dependent DNA helicase activity;0.00155134556929726!GO:0019843;rRNA binding;0.00155887106933624!GO:0003725;double-stranded RNA binding;0.00159757490566091!GO:0046966;thyroid hormone receptor binding;0.00160544765812294!GO:0051087;chaperone binding;0.00161382215691436!GO:0042393;histone binding;0.0016494203291381!GO:0000793;condensed chromosome;0.00165434876651657!GO:0003746;translation elongation factor activity;0.00166326535804762!GO:0005768;endosome;0.00167081102793416!GO:0044454;nuclear chromosome part;0.00167899674038915!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00175638555567331!GO:0015002;heme-copper terminal oxidase activity;0.00175638555567331!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00175638555567331!GO:0004129;cytochrome-c oxidase activity;0.00175638555567331!GO:0005770;late endosome;0.00175721258811488!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00176825435752695!GO:0044450;microtubule organizing center part;0.00178847054599298!GO:0000726;non-recombinational repair;0.00191228842405593!GO:0045454;cell redox homeostasis;0.00202249002094025!GO:0031647;regulation of protein stability;0.00214313727199652!GO:0031123;RNA 3'-end processing;0.0021785152762681!GO:0009124;nucleoside monophosphate biosynthetic process;0.00219832717020191!GO:0009123;nucleoside monophosphate metabolic process;0.00219832717020191!GO:0043065;positive regulation of apoptosis;0.00220417076296788!GO:0015980;energy derivation by oxidation of organic compounds;0.00221835505073356!GO:0042054;histone methyltransferase activity;0.00235798374300147!GO:0048500;signal recognition particle;0.0023707082629265!GO:0007006;mitochondrial membrane organization and biogenesis;0.00254651553321295!GO:0004532;exoribonuclease activity;0.00265400638231489!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.00265400638231489!GO:0006595;polyamine metabolic process;0.00271307054243007!GO:0016272;prefoldin complex;0.00275705000695926!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00280227683905491!GO:0043068;positive regulation of programmed cell death;0.0028383616686435!GO:0006400;tRNA modification;0.00289847049114517!GO:0008312;7S RNA binding;0.00291742165336968!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00302436522307831!GO:0000082;G1/S transition of mitotic cell cycle;0.00320274870745399!GO:0043488;regulation of mRNA stability;0.00325056935252616!GO:0043487;regulation of RNA stability;0.00325056935252616!GO:0030521;androgen receptor signaling pathway;0.00325415362544215!GO:0005874;microtubule;0.00329478260240351!GO:0007004;telomere maintenance via telomerase;0.00329773085970176!GO:0007050;cell cycle arrest;0.00333580311895314!GO:0044431;Golgi apparatus part;0.00336974356647927!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00346632597946843!GO:0051053;negative regulation of DNA metabolic process;0.00347507616244226!GO:0047485;protein N-terminus binding;0.00352332644963718!GO:0048523;negative regulation of cellular process;0.00355200370150292!GO:0000910;cytokinesis;0.00366053433640564!GO:0007017;microtubule-based process;0.00372015422692849!GO:0048471;perinuclear region of cytoplasm;0.00377396552911022!GO:0005773;vacuole;0.00386387120807038!GO:0004520;endodeoxyribonuclease activity;0.0039574960271277!GO:0000792;heterochromatin;0.00407219228728088!GO:0005663;DNA replication factor C complex;0.00411285902915553!GO:0009615;response to virus;0.00413510992365395!GO:0051338;regulation of transferase activity;0.00420761179854912!GO:0006611;protein export from nucleus;0.00427656411825429!GO:0043549;regulation of kinase activity;0.00436419447966511!GO:0006278;RNA-dependent DNA replication;0.00442547818666539!GO:0016279;protein-lysine N-methyltransferase activity;0.00447415177123788!GO:0018024;histone-lysine N-methyltransferase activity;0.00447415177123788!GO:0016278;lysine N-methyltransferase activity;0.00447415177123788!GO:0009161;ribonucleoside monophosphate metabolic process;0.00449605719770576!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.00449605719770576!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00449605719770576!GO:0045047;protein targeting to ER;0.00449605719770576!GO:0000323;lytic vacuole;0.0045283523792685!GO:0005764;lysosome;0.0045283523792685!GO:0000339;RNA cap binding;0.00457621914197448!GO:0008180;signalosome;0.00458799575221564!GO:0030658;transport vesicle membrane;0.00492777979963654!GO:0008139;nuclear localization sequence binding;0.00494719738439074!GO:0031577;spindle checkpoint;0.00513660048945171!GO:0046112;nucleobase biosynthetic process;0.00513780110286868!GO:0051920;peroxiredoxin activity;0.00513780110286868!GO:0048487;beta-tubulin binding;0.00540948084154496!GO:0006839;mitochondrial transport;0.00560145667794147!GO:0046483;heterocycle metabolic process;0.00565002609741277!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00581543374703174!GO:0051320;S phase;0.00585617644344207!GO:0035258;steroid hormone receptor binding;0.00618185477851288!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00661233162011555!GO:0006917;induction of apoptosis;0.00706052150802363!GO:0000152;nuclear ubiquitin ligase complex;0.00727565794520452!GO:0006378;mRNA polyadenylation;0.00742778041170999!GO:0007243;protein kinase cascade;0.00754328078894029!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.00776926579243425!GO:0019752;carboxylic acid metabolic process;0.00782489317071785!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00796385849511035!GO:0030518;steroid hormone receptor signaling pathway;0.00799562674952958!GO:0045859;regulation of protein kinase activity;0.00814063782189!GO:0006082;organic acid metabolic process;0.0083541558651066!GO:0030384;phosphoinositide metabolic process;0.00862436251315839!GO:0006007;glucose catabolic process;0.00880356238210163!GO:0008250;oligosaccharyl transferase complex;0.00890494959268706!GO:0004576;oligosaccharyl transferase activity;0.00895166371178314!GO:0005832;chaperonin-containing T-complex;0.00900744987341856!GO:0012502;induction of programmed cell death;0.00900744987341856!GO:0043022;ribosome binding;0.00946858890090406!GO:0043189;H4/H2A histone acetyltransferase complex;0.00958672593978365!GO:0009081;branched chain family amino acid metabolic process;0.00979104984373355!GO:0035267;NuA4 histone acetyltransferase complex;0.00986644097236861!GO:0051297;centrosome organization and biogenesis;0.00997633952167971!GO:0031023;microtubule organizing center organization and biogenesis;0.00997633952167971!GO:0005637;nuclear inner membrane;0.0104264728860985!GO:0016569;covalent chromatin modification;0.0106797847287288!GO:0030660;Golgi-associated vesicle membrane;0.0109269480151777!GO:0043069;negative regulation of programmed cell death;0.0111598635650057!GO:0006301;postreplication repair;0.0115630003168492!GO:0008017;microtubule binding;0.0116714788437202!GO:0016197;endosome transport;0.0117260336694355!GO:0006740;NADPH regeneration;0.0117260336694355!GO:0006098;pentose-phosphate shunt;0.0117260336694355!GO:0032404;mismatch repair complex binding;0.0117484218053679!GO:0008213;protein amino acid alkylation;0.0117484218053679!GO:0006479;protein amino acid methylation;0.0117484218053679!GO:0008022;protein C-terminus binding;0.0118217297845197!GO:0006891;intra-Golgi vesicle-mediated transport;0.0122779246238355!GO:0005758;mitochondrial intermembrane space;0.0122897580481643!GO:0000123;histone acetyltransferase complex;0.0124482111053307!GO:0030433;ER-associated protein catabolic process;0.0124482111053307!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0124482111053307!GO:0033261;regulation of progression through S phase;0.0126017017991391!GO:0044440;endosomal part;0.0129608054578479!GO:0010008;endosome membrane;0.0129608054578479!GO:0043066;negative regulation of apoptosis;0.0130387264153432!GO:0030041;actin filament polymerization;0.0133455329288844!GO:0019783;small conjugating protein-specific protease activity;0.0136597794097604!GO:0016491;oxidoreductase activity;0.013777958604194!GO:0006607;NLS-bearing substrate import into nucleus;0.0138275893996626!GO:0006406;mRNA export from nucleus;0.0138831819153647!GO:0006376;mRNA splice site selection;0.0138831819153647!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0138831819153647!GO:0004748;ribonucleoside-diphosphate reductase activity;0.0141246687214105!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.0141246687214105!GO:0009116;nucleoside metabolic process;0.0141338108385408!GO:0032039;integrator complex;0.014190954777612!GO:0006355;regulation of transcription, DNA-dependent;0.0142528728703661!GO:0030176;integral to endoplasmic reticulum membrane;0.0142568392460288!GO:0000178;exosome (RNase complex);0.0142568392460288!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0143114095158197!GO:0000175;3'-5'-exoribonuclease activity;0.0145102355446722!GO:0033170;DNA-protein loading ATPase activity;0.0145921413141638!GO:0003689;DNA clamp loader activity;0.0145921413141638!GO:0006650;glycerophospholipid metabolic process;0.0145921413141638!GO:0030663;COPI coated vesicle membrane;0.0146930280430063!GO:0030126;COPI vesicle coat;0.0146930280430063!GO:0008234;cysteine-type peptidase activity;0.0146930280430063!GO:0003702;RNA polymerase II transcription factor activity;0.0148816323120367!GO:0000738;DNA catabolic process, exonucleolytic;0.0150232336295679!GO:0042613;MHC class II protein complex;0.0152882216859031!GO:0005769;early endosome;0.0152882216859031!GO:0006303;double-strand break repair via nonhomologous end joining;0.0152882216859031!GO:0043281;regulation of caspase activity;0.0153898115467504!GO:0030867;rough endoplasmic reticulum membrane;0.0154540689747273!GO:0008156;negative regulation of DNA replication;0.0154540689747273!GO:0018196;peptidyl-asparagine modification;0.0156893936755775!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0156893936755775!GO:0008097;5S rRNA binding;0.0160270126963576!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.016653765385834!GO:0004519;endonuclease activity;0.0166895150963792!GO:0046489;phosphoinositide biosynthetic process;0.016782340699965!GO:0000018;regulation of DNA recombination;0.0170697510411638!GO:0046474;glycerophospholipid biosynthetic process;0.0171893314483999!GO:0004843;ubiquitin-specific protease activity;0.0174774334365188!GO:0009127;purine nucleoside monophosphate biosynthetic process;0.0175442873615036!GO:0009167;purine ribonucleoside monophosphate metabolic process;0.0175442873615036!GO:0009126;purine nucleoside monophosphate metabolic process;0.0175442873615036!GO:0009168;purine ribonucleoside monophosphate biosynthetic process;0.0175442873615036!GO:0051789;response to protein stimulus;0.0176898436856677!GO:0006986;response to unfolded protein;0.0176898436856677!GO:0004523;ribonuclease H activity;0.0178154396645183!GO:0007021;tubulin folding;0.0180543033988803!GO:0008159;positive transcription elongation factor activity;0.0180621896537744!GO:0006919;caspase activation;0.0180736693551145!GO:0016407;acetyltransferase activity;0.0182422632202588!GO:0003924;GTPase activity;0.0185158900865564!GO:0043624;cellular protein complex disassembly;0.0186113361933584!GO:0042113;B cell activation;0.0186562825345208!GO:0040029;regulation of gene expression, epigenetic;0.0188203652538958!GO:0030174;regulation of DNA replication initiation;0.0191114427097785!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0191604462204967!GO:0030118;clathrin coat;0.0192998456734572!GO:0019104;DNA N-glycosylase activity;0.0193707511052829!GO:0048519;negative regulation of biological process;0.0195407256546988!GO:0045792;negative regulation of cell size;0.0196007665252586!GO:0030137;COPI-coated vesicle;0.0196924931091262!GO:0043284;biopolymer biosynthetic process;0.020017296049798!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0203274225666098!GO:0051092;activation of NF-kappaB transcription factor;0.0203595209844224!GO:0009262;deoxyribonucleotide metabolic process;0.0205541902130802!GO:0008538;proteasome activator activity;0.0206189988832075!GO:0008170;N-methyltransferase activity;0.0207802711860541!GO:0042802;identical protein binding;0.0209463393670073!GO:0002504;antigen processing and presentation of peptide or polysaccharide antigen via MHC class II;0.0215313373633118!GO:0008287;protein serine/threonine phosphatase complex;0.0218791889771747!GO:0007346;regulation of progression through mitotic cell cycle;0.0222214319897277!GO:0009067;aspartate family amino acid biosynthetic process;0.0222450707527007!GO:0051336;regulation of hydrolase activity;0.0223671885062593!GO:0045120;pronucleus;0.0229541189978316!GO:0005658;alpha DNA polymerase:primase complex;0.0230836717874735!GO:0032984;macromolecular complex disassembly;0.023460256698202!GO:0009303;rRNA transcription;0.0234636315156307!GO:0033673;negative regulation of kinase activity;0.0241145718650886!GO:0006469;negative regulation of protein kinase activity;0.0241145718650886!GO:0019867;outer membrane;0.0241145718650886!GO:0005869;dynactin complex;0.0241994089408851!GO:0016790;thiolester hydrolase activity;0.0246776767440471!GO:0031968;organelle outer membrane;0.0249753747918003!GO:0000118;histone deacetylase complex;0.0250019394301786!GO:0006118;electron transport;0.0252288271906134!GO:0022411;cellular component disassembly;0.0254249518703491!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0254376809216332!GO:0006354;RNA elongation;0.0261528354518085!GO:0051348;negative regulation of transferase activity;0.0262683336745967!GO:0000139;Golgi membrane;0.0264236044793358!GO:0008536;Ran GTPase binding;0.0273283508380073!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0275620511954188!GO:0045039;protein import into mitochondrial inner membrane;0.0275620511954188!GO:0009113;purine base biosynthetic process;0.0277612884375895!GO:0030308;negative regulation of cell growth;0.028051318425694!GO:0031970;organelle envelope lumen;0.0285888443463523!GO:0006519;amino acid and derivative metabolic process;0.0286703931197805!GO:0031625;ubiquitin protein ligase binding;0.028822260096599!GO:0004540;ribonuclease activity;0.0291683034279355!GO:0004221;ubiquitin thiolesterase activity;0.0293519368136502!GO:0004722;protein serine/threonine phosphatase activity;0.0293753583026482!GO:0015036;disulfide oxidoreductase activity;0.0297424963022646!GO:0017056;structural constituent of nuclear pore;0.0303858924902801!GO:0000119;mediator complex;0.0307109226888351!GO:0006916;anti-apoptosis;0.0309534013474133!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0310396130333524!GO:0001832;blastocyst growth;0.0310648334948347!GO:0019210;kinase inhibitor activity;0.0311114553016094!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0315091051616462!GO:0046365;monosaccharide catabolic process;0.0316188118314695!GO:0006541;glutamine metabolic process;0.0317939877863859!GO:0043631;RNA polyadenylation;0.0318514865649752!GO:0016788;hydrolase activity, acting on ester bonds;0.032958956332404!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0330930831876315!GO:0030145;manganese ion binding;0.0331049268883504!GO:0006596;polyamine biosynthetic process;0.0331643667864366!GO:0043087;regulation of GTPase activity;0.0332060089781654!GO:0006266;DNA ligation;0.0333553641776597!GO:0007098;centrosome cycle;0.0334363949912272!GO:0019207;kinase regulator activity;0.0337302486328871!GO:0004659;prenyltransferase activity;0.0342385619494334!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0343285994235068!GO:0010257;NADH dehydrogenase complex assembly;0.0343285994235068!GO:0033108;mitochondrial respiratory chain complex assembly;0.0343285994235068!GO:0006415;translational termination;0.0344740177565847!GO:0045815;positive regulation of gene expression, epigenetic;0.0348474478208848!GO:0030508;thiol-disulfide exchange intermediate activity;0.0348924934131903!GO:0005784;translocon complex;0.0348924934131903!GO:0003747;translation release factor activity;0.036158854723256!GO:0008079;translation termination factor activity;0.036158854723256!GO:0005666;DNA-directed RNA polymerase III complex;0.0361943008764145!GO:0005732;small nucleolar ribonucleoprotein complex;0.0361943008764145!GO:0042809;vitamin D receptor binding;0.0363594702092226!GO:0016570;histone modification;0.036556754763059!GO:0016799;hydrolase activity, hydrolyzing N-glycosyl compounds;0.0372620954216897!GO:0032405;MutLalpha complex binding;0.0380356500486644!GO:0022415;viral reproductive process;0.0380393816663587!GO:0016180;snRNA processing;0.038106161638483!GO:0016073;snRNA metabolic process;0.038106161638483!GO:0005092;GDP-dissociation inhibitor activity;0.0382074094561801!GO:0008654;phospholipid biosynthetic process;0.0387253581045627!GO:0016605;PML body;0.0395259488019829!GO:0008537;proteasome activator complex;0.0398696218895713!GO:0051090;regulation of transcription factor activity;0.0399422382458114!GO:0046164;alcohol catabolic process;0.04027230930708!GO:0005680;anaphase-promoting complex;0.0403966220278036!GO:0043241;protein complex disassembly;0.040886768659934!GO:0016585;chromatin remodeling complex;0.040886768659934!GO:0009396;folic acid and derivative biosynthetic process;0.0411696324480593!GO:0045947;negative regulation of translational initiation;0.041309012264141!GO:0008637;apoptotic mitochondrial changes;0.0413450498630656!GO:0045926;negative regulation of growth;0.0414295188323124!GO:0004239;methionyl aminopeptidase activity;0.0415275846861516!GO:0051656;establishment of organelle localization;0.0415275846861516!GO:0031371;ubiquitin conjugating enzyme complex;0.0416466907316757!GO:0004860;protein kinase inhibitor activity;0.041744941696599!GO:0030125;clathrin vesicle coat;0.0418334739382525!GO:0030665;clathrin coated vesicle membrane;0.0418334739382525!GO:0050662;coenzyme binding;0.0422527610388096!GO:0006379;mRNA cleavage;0.0426252605583548!GO:0000096;sulfur amino acid metabolic process;0.0426718969852856!GO:0006308;DNA catabolic process;0.0427900827605271!GO:0006672;ceramide metabolic process;0.0429732293476967!GO:0019814;immunoglobulin complex;0.0432516932043064!GO:0019815;B cell receptor complex;0.0432516932043064!GO:0046128;purine ribonucleoside metabolic process;0.0447153823350334!GO:0042278;purine nucleoside metabolic process;0.0447153823350334!GO:0008143;poly(A) binding;0.0450292350834412!GO:0022406;membrane docking;0.0450292350834412!GO:0048278;vesicle docking;0.0450292350834412!GO:0006298;mismatch repair;0.0454258463528633!GO:0045005;maintenance of fidelity during DNA-dependent DNA replication;0.0454258463528633!GO:0005487;nucleocytoplasmic transporter activity;0.0457953376827531!GO:0033116;ER-Golgi intermediate compartment membrane;0.0459143961130073!GO:0045892;negative regulation of transcription, DNA-dependent;0.0459143961130073!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0459289196747198!GO:0000303;response to superoxide;0.0463076674584404!GO:0019320;hexose catabolic process;0.0465302477543955!GO:0045730;respiratory burst;0.0472093412467803!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.047512606724689!GO:0008320;protein transmembrane transporter activity;0.0481456002491951!GO:0000930;gamma-tubulin complex;0.0483086495227712!GO:0050000;chromosome localization;0.0488833873123762!GO:0051303;establishment of chromosome localization;0.0488833873123762!GO:0019238;cyclohydrolase activity;0.0489048309783531!GO:0046822;regulation of nucleocytoplasmic transport;0.0494587648852815!GO:0008652;amino acid biosynthetic process;0.0496194285295168!GO:0042769;DNA damage response, detection of DNA damage;0.0498790001941819
|sample_id=10422
|sample_id=10422
|sample_note=machine failed, remainder reloaded, low amount
|sample_note=machine failed, remainder reloaded, low amount
Line 76: Line 102:
|sample_tissue=blood
|sample_tissue=blood
|top_motifs=POU5F1:3.48930882857;POU2F1..3:2.79161204139;MYB:2.58995818777;E2F1..5:2.2574207408;FOXA2:2.00500583081;NFY{A,B,C}:1.99411676658;NRF1:1.96536912903;YY1:1.91901739572;BREu{core}:1.8897311784;ZBTB16:1.88465040003;AIRE:1.70727965355;VSX1,2:1.60362029358;PBX1:1.51280334453;POU1F1:1.45255369082;PDX1:1.44751926323;FOX{I1,J2}:1.40948616304;FOXP3:1.40539718407;NKX6-1,2:1.37134319468;ELK1,4_GABP{A,B1}:1.36989980034;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.35464440794;ZNF143:1.34389683571;ELF1,2,4:1.19822774444;CDX1,2,4:1.11250724224;FOX{F1,F2,J1}:1.0916677759;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.02455550814;PITX1..3:1.01067663445;LMO2:1.00701310479;HOXA9_MEIS1:0.990914592255;FOXP1:0.955739164518;PAX3,7:0.943681511779;DMAP1_NCOR{1,2}_SMARC:0.863625914411;PAX6:0.851435202655;TFDP1:0.832846467275;TOPORS:0.79856267184;bHLH_family:0.787256379445;PAX4:0.771037568204;ZEB1:0.728957472465;EN1,2:0.727746399488;CUX2:0.72218620662;ALX1:0.719171899659;TEF:0.704060674348;RUNX1..3:0.670629769288;GFI1:0.633356529705;SPI1:0.62035134754;ARID5B:0.597571539855;SPIB:0.563318647214;MYOD1:0.545763181811;GATA6:0.53795019324;HOX{A5,B5}:0.459442435853;RFX2..5_RFXANK_RFXAP:0.445357514891;OCT4_SOX2{dimer}:0.432025794129;CDC5L:0.418096636813;PAX8:0.413502405013;HOX{A6,A7,B6,B7}:0.413401663804;SNAI1..3:0.394005505958;EVI1:0.364790411856;IRF1,2:0.344948570645;FOXO1,3,4:0.317636775346;ETS1,2:0.284476007596;NR5A1,2:0.284046084216;ADNP_IRX_SIX_ZHX:0.273393907375;NFKB1_REL_RELA:0.267337899797;HOX{A4,D4}:0.257589395065;NKX2-2,8:0.256812125087;DBP:0.228501175534;POU3F1..4:0.223031569161;BPTF:0.173832181338;ATF4:0.159252006326;NKX3-1:0.157672105272;CRX:0.121526618916;NKX3-2:0.111638613731;CREB1:0.0939306654527;ATF5_CREB3:0.0869919803176;SOX{8,9,10}:0.0786367042381;HAND1,2:0.072381048789;T:0.0470595911545;NFIL3:0.0181991197866;RBPJ:0.00107608752352;TGIF1:-0.0302678218994;AHR_ARNT_ARNT2:-0.040676490345;IKZF2:-0.042192201116;IRF7:-0.0433781468811;NANOG{mouse}:-0.0482122560207;PPARG:-0.075853122166;PRRX1,2:-0.0813476768912;ZNF384:-0.0872033341677;HES1:-0.122545723297;CEBPA,B_DDIT3:-0.126955272748;TLX2:-0.145201971971;AR:-0.173525868975;LEF1_TCF7_TCF7L1,2:-0.189350454843;NKX2-1,4:-0.242309494195;FOXN1:-0.247063251956;HNF4A_NR2F1,2:-0.271182455099;FOXM1:-0.295941593;HNF1A:-0.308363083791;RXRA_VDR{dimer}:-0.312691117199;HIF1A:-0.313764955641;NANOG:-0.322901919781;FOXQ1:-0.328175831979;ZNF148:-0.340442196791;RFX1:-0.353143530421;STAT5{A,B}:-0.358502705601;RXR{A,B,G}:-0.395732242013;MYBL2:-0.407404345758;NR1H4:-0.413822995765;HMGA1,2:-0.44085766221;PRDM1:-0.471327790868;NFIX:-0.471350230589;MEF2{A,B,C,D}:-0.472725060557;SOX5:-0.482209117843;ZFP161:-0.484173115976;SREBF1,2:-0.505683584356;FOX{D1,D2}:-0.511633683727;RREB1:-0.518009782216;TP53:-0.525233764345;RORA:-0.530141405841;MYFfamily:-0.559124134045;ESRRA:-0.570417545451;SPZ1:-0.577769519393;POU6F1:-0.613681246694;SOX17:-0.616903637092;ONECUT1,2:-0.642626471777;FOSL2:-0.655259669863;ALX4:-0.656065174109;GZF1:-0.717277882767;FOXD3:-0.722062391224;JUN:-0.731048641738;GATA4:-0.734087690404;FOS_FOS{B,L1}_JUN{B,D}:-0.739719607519;UFEwm:-0.758202079097;HSF1,2:-0.786407137052;PAX2:-0.793821300435;NFE2:-0.807666492035;NKX2-3_NKX2-5:-0.812019573837;ESR1:-0.826544056278;PAX5:-0.836975315921;SMAD1..7,9:-0.844743044285;BACH2:-0.863944784413;ZIC1..3:-0.897812194067;HLF:-0.911973389339;IKZF1:-0.956674620274;TAL1_TCF{3,4,12}:-0.956703364723;NR6A1:-0.957171686195;EP300:-0.957359738124;SOX2:-0.989684920006;ZNF238:-0.993527366089;TBX4,5:-1.0334873304;MAFB:-1.03706325026;ATF2:-1.03965671145;NFE2L2:-1.04526389966;KLF4:-1.06368880644;FOXL1:-1.06727518239;NFATC1..3:-1.07589171455;LHX3,4:-1.08215541472;STAT1,3:-1.08505592517;NHLH1,2:-1.09912452673;GCM1,2:-1.11768834173;GFI1B:-1.13007657215;PAX1,9:-1.14418245449;MZF1:-1.16741476921;HBP1_HMGB_SSRP1_UBTF:-1.19758682909;STAT2,4,6:-1.21466480094;NR3C1:-1.22205280261;REST:-1.23903023759;PATZ1:-1.2399547403;TBP:-1.31415309267;EBF1:-1.31747598361;MED-1{core}:-1.38111347651;HIC1:-1.43415328308;ZBTB6:-1.45148637355;MTE{core}:-1.48035994276;SRF:-1.49950508598;GTF2A1,2:-1.54746322148;MAZ:-1.57847508807;MTF1:-1.58164007728;GTF2I:-1.58507388684;NFE2L1:-1.58577737632;TEAD1:-1.60085893196;TFAP4:-1.6159209579;ZNF423:-1.65621492755;HMX1:-1.69951936752;XCPE1{core}:-1.72445941464;ATF6:-1.7585983231;EGR1..3:-1.77345229595;SP1:-1.83372071186;TLX1..3_NFIC{dimer}:-1.83844727801;XBP1:-2.03839085848;TFAP2{A,C}:-2.16031916352;TFAP2B:-2.21478584271;GLI1..3:-2.21945120078;TFCP2:-2.30026552924
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|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10422-106C8;search_select_hide=table117:FF:10422-106C8
}}
}}

Latest revision as of 14:00, 3 June 2020

Name:Burkitt's lymphoma cell line:DAUDI
Species:Human (Homo sapiens)
Library ID:CNhs10739
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stage16 year old adolescent
sexmale
age16
cell typeb cell
cell lineDAUDI
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004763
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10739 CAGE DRX007779 DRR008651
Accession ID Hg19

Library idBAMCTSS
CNhs10739 DRZ000076 DRZ001461
Accession ID Hg38

Library idBAMCTSS
CNhs10739 DRZ011426 DRZ012811
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
RNA-Seq  SAMD00004763
Library accession numbers

Library idMethodExp. accession idRun accession id
RDhi10065 RNA-Seq DRX057122 DRR062881
Accession ID Hg19

Library idBAMCTSS
RDhi10065 DRZ007957


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0374
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.751
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0626
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.0324
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0.117
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0566
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.0196
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.061
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0.117
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.019
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.23
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.0324
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.121
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0.406
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.138
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.856
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.0997
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0295
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0767
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.209
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.0324
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.701
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.0211
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.0324
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.0167
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0.285
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.319
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0.758
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0.0324
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10739

Jaspar motifP-value
MA0002.20.213
MA0003.10.367
MA0004.10.039
MA0006.10.204
MA0007.10.382
MA0009.10.26
MA0014.10.943
MA0017.10.567
MA0018.20.825
MA0019.10.0899
MA0024.13.0985e-9
MA0025.10.476
MA0027.10.236
MA0028.12.19411e-5
MA0029.10.605
MA0030.10.446
MA0031.10.636
MA0035.20.467
MA0038.10.0234
MA0039.20.721
MA0040.10.178
MA0041.10.174
MA0042.10.674
MA0043.10.915
MA0046.10.138
MA0047.20.342
MA0048.10.431
MA0050.10.125
MA0051.10.251
MA0052.10.0235
MA0055.10.205
MA0057.10.693
MA0058.10.0122
MA0059.10.00401
MA0060.11.70947e-11
MA0061.10.26
MA0062.22.1172e-8
MA0065.20.154
MA0066.10.724
MA0067.10.914
MA0068.10.0776
MA0069.10.26
MA0070.10.524
MA0071.10.659
MA0072.10.428
MA0073.10.826
MA0074.10.324
MA0076.14.69977e-7
MA0077.10.163
MA0078.10.141
MA0079.20.273
MA0080.22.58402e-4
MA0081.10.00333
MA0083.11.10363e-5
MA0084.10.319
MA0087.10.0578
MA0088.10.00144
MA0090.17.62011e-5
MA0091.10.986
MA0092.10.945
MA0093.10.0248
MA0099.22.16419e-8
MA0100.10.00404
MA0101.10.987
MA0102.20.115
MA0103.10.00765
MA0104.21.9197e-4
MA0105.10.0145
MA0106.10.282
MA0107.10.779
MA0108.22.86828e-10
MA0111.10.21
MA0112.20.71
MA0113.10.131
MA0114.10.215
MA0115.10.02
MA0116.15.6412e-4
MA0117.10.63
MA0119.10.74
MA0122.10.595
MA0124.10.692
MA0125.10.82
MA0131.10.0628
MA0135.10.005
MA0136.19.30656e-7
MA0137.20.00838
MA0138.20.238
MA0139.10.222
MA0140.10.0227
MA0141.10.4
MA0142.10.011
MA0143.10.305
MA0144.10.00481
MA0145.10.114
MA0146.10.724
MA0147.15.52207e-5
MA0148.10.567
MA0149.10.0795
MA0150.10.0357
MA0152.10.194
MA0153.10.0304
MA0154.10.258
MA0155.10.351
MA0156.11.93776e-5
MA0157.10.242
MA0159.10.343
MA0160.10.529
MA0162.10.521
MA0163.12.23662e-5
MA0164.10.61
MA0258.10.512
MA0259.10.0467



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10739

Novel motifP-value
10.0248
100.0137
1000.197
1010.097
1020.316
1030.279
1040.589
1050.997
1060.0837
1070.0301
1080.342
1090.226
110.14
1100.188
1110.0603
1120.82
1130.906
1140.43
1150.762
1160.857
1170.0173
1180.36
1190.259
120.789
1200.696
1210.558
1220.474
1230.0011
1240.171
1250.224
1260.473
1270.471
1280.0234
1290.963
130.192
1300.928
1310.0365
1320.127
1330.385
1340.351
1350.428
1360.149
1370.0601
1380.367
1390.486
140.637
1400.617
1410.404
1420.218
1430.293
1440.308
1450.238
1460.664
1470.316
1480.964
1490.228
150.135
1500.796
1510.345
1520.00534
1530.681
1540.779
1550.0486
1560.778
1570.298
1580.3
1590.854
160.974
1600.907
1610.15
1620.989
1630.547
1640.405
1650.795
1660.236
1670.0364
1680.524
1690.535
170.596
180.605
190.521
20.25
200.395
210.208
220.607
230.0295
240.399
250.096
260.0459
270.982
280.379
290.0247
30.294
300.0973
310.996
320.195
330.595
340.318
350.294
360.0408
370.884
380.675
390.163
40.146
400.261
410.708
420.148
430.715
440.566
450.249
460.212
470.0294
480.146
490.144
50.87
500.697
510.933
520.0779
530.808
540.65
550.757
560.864
570.197
580.29
590.588
60.683
600.296
610.179
620.299
630.923
640.321
650.351
660.0147
670.684
680.189
690.861
70.188
700.861
710.0342
720.849
730.269
740.622
750.0132
760.0859
770.211
780.524
790.212
80.203
800.828
810.0636
820.757
830.718
840.853
850.161
860.412
870.375
880.781
890.696
90.48
900.00361
910.19
920.263
930.864
940.264
950.337
960.733
970.173
980.715
990.272



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10739


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000945 (lymphocyte of B lineage)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
0060058 (lymphoma)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100104 (lymphoma cell line sample)
0100889 (Burkitt lymphoma cell line sample)
0101561 (DAUDI cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)

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