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{{f5samples
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000119,UBERON:0000383,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000474,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000486,UBERON:0000490,UBERON:0000914,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0000990,UBERON:0000995,UBERON:0001015,UBERON:0001062,UBERON:0001134,UBERON:0002036,UBERON:0002050,UBERON:0002204,UBERON:0002329,UBERON:0002385,UBERON:0002532,UBERON:0003059,UBERON:0003077,UBERON:0003082,UBERON:0003100,UBERON:0003104,UBERON:0003133,UBERON:0003134,UBERON:0003975,UBERON:0004120,UBERON:0004175,UBERON:0004290,UBERON:0005156,UBERON:0005291,UBERON:0005423,UBERON:0005795,UBERON:0009142
|DRA_sample_Accession=CAGE@SAMD00005777
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000056,CL:0000144,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000220,CL:0000222,CL:0000255,CL:0000355,CL:0000393,CL:0000514,CL:0000548,CL:0000680,CL:0000723,CL:0002321,CL:0002371,CL:0002601
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005777
|accession_numbers=CAGE;DRX008515;DRR009387;DRZ000812;DRZ002197;DRZ012162;DRZ013547
|accession_numbers_RNASeq=sRNA-Seq;DRX036998;DRR041364;DRZ007006
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000995,UBERON:0003134,UBERON:0005156,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0003975,UBERON:0004175,UBERON:0010317,UBERON:0003100,UBERON:0000474
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0002601
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000185
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr1:170632285..170632309,+!p1@PRRX1!1.56!40.09!PRRX1;;chr4:174451370..174451387,-!p1@HAND2!1.51!31.57!HAND2;;chr15:57511609..57511651,+!p2@TCF12!1.48!48.60!TCF12;;chr6:34204921..34204939,+!p3@HMGA1!1.45!777.28!HMGA1;;chr16:86544113..86544145,+!p1@FOXF1!1.37!27.67!FOXF1;;chr11:65686802..65686818,+!p6@DRAP1!1.36!37.96!DRAP1;;chr1:170633348..170633399,+!p2@PRRX1!1.34!28.03!PRRX1;;chr1:170632959..170632987,+!p4@PRRX1!1.27!19.16!PRRX1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.26!17.38!ZBED1;;chr3:141150883..141150961,+!p6@ZBTB38!1.24!16.32!ZBTB38;;chr9:77112244..77112262,+!p1@RORB!1.23!18.09!RORB;;chr11:65686732..65686756,+!p2@DRAP1!1.21!63.50!DRAP1;;chr2:239756671..239756732,+!p1@TWIST2!1.21!48.96!TWIST2;;chr17:59477233..59477263,+!p1@TBX2!1.19!44.70!TBX2;;chr12:115122318..115122331,-!p2@TBX3!1.16!13.48!TBX3;;chr11:65687362..65687436,+!p3@DRAP1!1.13!56.76!DRAP1;;chr3:25470156..25470227,+!p2@RARB!1.13!12.42!RARB;;chr11:46299199..46299233,+!p1@CREB3L1!1.11!61.37!CREB3L1;;chr4:174450089..174450153,-!p2@HAND2!1.10!11.71!HAND2;;chr7:27224842..27224872,-!p1@HOXA11!1.09!11.35!HOXA11;;chr17:1959369..1959388,+!p2@HIC1!1.07!28.74!HIC1;;chr6:134210243..134210257,+!p1@TCF21!1.07!10.64!TCF21;;chr19:46801639..46801699,+!p1@HIF3A!1.07!10.64!HIF3A;;chr1:170633058..170633084,+!p5@PRRX1!1.07!10.64!PRRX1;;chr12:66218598..66218645,+!p2@HMGA2!1.03!45.41!HMGA2;;chr11:65687222..65687240,+!p7@DRAP1!1.03!12.42!DRAP1;;chr17:38256799..38256815,-!p3@NR1D1!0.99!16.32!NR1D1;;chr15:96873984..96873999,+!p3@NR2F2!0.98!63.86!NR2F2;;chr2:66662281..66662308,+!p1@MEIS1!0.98!30.15!MEIS1;;chr19:13134772..13134822,+!p2@NFIX!0.98!12.77!NFIX;;chr2:176969228..176969260,+!p1@HOXD11!0.98!8.51!HOXD11;;chr11:65667884..65667895,-!p2@FOSL1!0.97!32.99!FOSL1;;chr14:24837368..24837401,+!p1@NFATC4!0.97!20.22!NFATC4;;chr11:32457075..32457095,-!p1@WT1!0.96!8.16!WT1;;chr5:92918919..92918942,+!p1@NR2F1!0.95!36.90!NR2F1;;chr1:170633262..170633285,+!p3@PRRX1!0.95!9.22!PRRX1;;chr12:115121962..115121987,-!p1@TBX3!0.94!66.70!TBX3;;chr11:65687158..65687216,+!p4@DRAP1!0.93!45.05!DRAP1;;chr12:115121802..115121814,-!p5@TBX3!0.93!7.45!TBX3;;chr2:66662249..66662267,+!p2@MEIS1!0.92!29.09!MEIS1;;chr12:66218255..66218304,+!p3@HMGA2!0.92!20.58!HMGA2;;chr17:59477197..59477212,+!p2@TBX2!0.92!12.77!TBX2;;chr2:239756739..239756755,+!p2@TWIST2!0.91!12.42!TWIST2;;chr11:65667846..65667868,-!p1@FOSL1!0.90!192.99!FOSL1;;chr17:38256822..38256851,-!p1@NR1D1!0.88!54.63!NR1D1;;chr17:59477275..59477286,+!p3@TBX2!0.88!8.87!TBX2;;chr3:138665937..138665968,-!p1@FOXL2!0.87!6.39!FOXL2;;chr7:27224795..27224840,-!p2@HOXA11!0.87!6.39!HOXA11;;chr4:81118647..81118666,+!p1@PRDM8!0.85!8.16!PRDM8;;chr15:57511589..57511608,+!p4@TCF12!0.85!6.03!TCF12;;chr1:170632250..170632277,+!p7@PRRX1!0.85!6.03!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.85!6.03!PRRX1;;chr12:26277956..26277980,-!p1@BHLHE41!0.84!22.35!BHLHE41;;chr1:158979792..158979814,+!p2@IFI16!0.83!59.60!IFI16;;chr16:86600426..86600441,+!p1@FOXC2!0.83!14.90!FOXC2;;chr15:67430351..67430366,+!p10@SMAD3!0.82!5.68!SMAD3;;chr7:27239703..27239715,-!p1@HOXA13!0.82!5.68!HOXA13;;chr12:115121770..115121781,-!p4@TBX3!0.82!5.68!TBX3;;chr12:85673977..85674015,+!p1@ALX1!0.82!5.68!ALX1;;chr14:33403881..33403924,+!p1@NPAS3!0.80!5.32!NPAS3;;chr6:34204672..34204692,+!p1@HMGA1!0.79!634.67!HMGA1;;chr3:25469724..25469773,+!p1@RARB!0.79!7.80!RARB;;chr7:14029283..14029311,-!p1@ETV1!0.78!29.09!ETV1;;chr11:65687243..65687276,+!p8@DRAP1!0.78!7.10!DRAP1;;chr3:128212033..128212051,-!p1@GATA2!0.78!4.97!GATA2;;chr17:1958388..1958404,+!p1@HIC1!0.77!34.41!HIC1;;chr2:185463247..185463263,+!p1@ZNF804A!0.77!9.22!ZNF804A;;chr11:46299539..46299620,+!p2@CREB3L1!0.75!8.16!CREB3L1;;chr16:86612320..86612394,+!p1@FOXL1!0.75!4.61!FOXL1;;chr17:59477403..59477414,+!p4@TBX2!0.75!4.61!TBX2;;chr7:27205136..27205164,-!p1@HOXA9!0.75!4.61!HOXA9;;chr7:44143925..44143970,+!p1@AEBP1!0.74!111.75!AEBP1;;chr2:19558373..19558392,-!p1@OSR1!0.73!13.13!OSR1;;chr17:7492684..7492778,-!p2@SOX15!0.73!9.93!SOX15;;chr3:141121847..141121868,+!p5@ZBTB38!0.72!6.74!ZBTB38;;chr19:45260775..45260838,+!p5@BCL3!0.72!5.68!BCL3;;chr10:119303078..119303169,+!p2@EMX2!0.72!4.26!EMX2;;chr2:102091144..102091183,-!p2@RFX8!0.72!4.26!RFX8;;chr3:141151009..141151033,+!p10@ZBTB38!0.72!4.26!ZBTB38;;chr2:66662895..66662907,+!p3@MEIS1!0.71!5.32!MEIS1;;chr4:26322267..26322334,+!p3@RBPJ!0.70!10.64!RBPJ;;chr10:63809106..63809127,+!p1@ARID5B!0.69!60.31!ARID5B;;chr6:34204973..34204990,+!p4@HMGA1!0.69!59.60!HMGA1;;chr12:66218836..66218888,+!p1@HMGA2!0.69!41.51!HMGA2;;chr7:27205106..27205134,-!p2@HOXA9!0.69!3.90!HOXA9;;chr1:170632115..170632136,+!p9@PRRX1!0.69!3.90!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!0.69!3.90!PRRX1;;chr15:96874012..96874042,+!p2@NR2F2!0.68!39.02!NR2F2;;chr11:65686952..65686975,+!p5@DRAP1!0.68!23.77!DRAP1;;chr12:26277929..26277955,-!p3@BHLHE41!0.68!5.68!BHLHE41;;chr12:24715376..24715432,-!p1@SOX5!0.68!4.97!SOX5;;chr11:65686776..65686787,+!p9@DRAP1!0.68!4.61!DRAP1;;chr1:151032860..151032918,+!p1@MLLT11!0.67!50.38!MLLT11;;chr15:96869114..96869160,+!p11@NR2F2!0.67!5.32!NR2F2;;chr3:128206762..128206781,-!p2@GATA2!0.66!25.54!GATA2;;chr8:77593474..77593612,+!p1@ZFHX4!0.66!17.38!ZFHX4;;chr1:170632137..170632172,+!p10@PRRX1!0.66!3.55!PRRX1;;chr9:77112225..77112238,+!p2@RORB!0.66!3.55!RORB;;chr7:113726357..113726443,+!p1@FOXP2!0.65!6.39!FOXP2;;chr21:36260295..36260310,-!p3@RUNX1!0.65!6.03!RUNX1;;chr12:53614115..53614154,-!p1@RARG!0.64!20.93!RARG;;chr9:16870710..16870763,-!p1@BNC2!0.64!6.39!BNC2;;chr5:176738887..176738934,-!p1@MXD3!0.63!25.90!MXD3;;chr5:158526917..158526932,-!p1@EBF1!0.63!9.22!EBF1;;chr1:221052700..221052730,+!p5@HLX!0.63!5.32!HLX;;chr12:27485762..27485776,+!p3@ARNTL2!0.62!9.58!ARNTL2;;chr7:14028488..14028516,-!p2@ETV1!0.62!3.55!ETV1;;chr2:66662396..66662407,+!p4@MEIS1!0.62!3.19!MEIS1;;chr3:141121820..141121838,+!p9@ZBTB38!0.62!3.19!ZBTB38;;chr16:51185172..51185197,-!p1@SALL1!0.62!3.19!SALL1;;chr15:96873921..96873946,+!p1@NR2F2!0.61!103.94!NR2F2;;chr17:17726907..17726958,-!p2@SREBF1!0.61!22.35!SREBF1;;chr15:42749722..42749739,-!p2@ZFP106!0.61!6.03!ZFP106;;chr8:145159846..145159889,+!p6@MAF1!0.61!4.61!MAF1;;chr1:221052733..221052749,+!p2@HLX!0.61!4.26!HLX;;chr7:14029312..14029325,-!p4@ETV1!0.60!3.90!ETV1;;chr1:158979872..158979898,+!p3@IFI16!0.59!10.29!IFI16;;chr4:4861385..4861398,+!p1@MSX1!0.59!9.93!MSX1;;chr19:13134457..13134462,+!p5@NFIX!0.59!5.68!NFIX;;chr5:92919068..92919082,+!p5@NR2F1!0.59!3.55!NR2F1;;chr2:66662510..66662521,+!p6@MEIS1!0.58!2.84!MEIS1;;chr1:170632439..170632465,+!p11@PRRX1!0.58!2.84!PRRX1;;chr1:170632762..170632786,+!p13@PRRX1!0.58!2.84!PRRX1;;chr11:32457103..32457123,-!p3@WT1!0.58!2.84!WT1;;chr12:66218904..66218913,+!p11@HMGA2!0.58!2.84!HMGA2;;chr10:31608127..31608156,+!p1@ZEB1!0.57!61.73!ZEB1;;chr12:26277817..26277863,-!p2@BHLHE41!0.57!3.90!BHLHE41;;chr15:83953397..83953425,-!p1@BNC1!0.57!3.19!BNC1;;chr18:53068911..53068935,-!p4@TCF4!0.57!3.19!TCF4;;chr15:96874145..96874166,+!p7@NR2F2!0.56!5.68!NR2F2;;chr12:66218443..66218461,+!p8@HMGA2!0.56!3.55!HMGA2;;chr7:44143997..44144008,+!p3@AEBP1!0.56!3.55!AEBP1;;chr12:57914286..57914304,-!p1@DDIT3!0.55!117.78!DDIT3;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!0.55!6.39!SOHLH2;;chr5:92918956..92918969,+!p4@NR2F1!0.55!2.84!NR2F1;;chr12:66218212..66218244,+!p5@HMGA2!0.54!3.90!HMGA2;;chr10:119302645..119302712,+!p3@EMX2!0.54!2.48!EMX2;;chr11:32456954..32456965,-!p4@WT1!0.54!2.48!WT1;;chr12:115122262..115122271,-!p7@TBX3!0.54!2.48!TBX3;;chr12:115122303..115122314,-!p6@TBX3!0.54!2.48!TBX3;;chr7:27192185..27192209,-!p1@HOXA3!0.54!2.48!HOXA3;;chr16:31076332..31076388,-!p3@ZNF668!0.54!2.48!ZNF668;;chr16:51185318..51185348,-!p2@SALL1!0.54!2.48!SALL1;;chr1:170632310..170632321,+!p15@PRRX1!0.54!2.48!PRRX1;;chr12:66218573..66218596,+!p7@HMGA2!0.53!3.90!HMGA2;;chr3:12330560..12330579,+!p1@PPARG!0.53!2.84!PPARG;;chr11:65686855..65686946,+!p1@DRAP1!0.52!227.76!DRAP1;;chr19:20188776..20188826,+!p1@ZNF90!0.52!7.45!ZNF90;;chr18:52989031..52989079,-!p2@TCF4!0.52!6.39!TCF4;;chr1:158985493..158985535,+!p4@IFI16!0.52!3.90!IFI16;;chr11:65687882..65687902,+!p10@DRAP1!0.52!3.55!DRAP1;;chr1:164528445..164528459,+!p2@PBX1!0.51!8.51!PBX1;;chr12:115122005..115122016,-!p3@TBX3!0.51!2.84!TBX3;;chr17:47492252..47492265,-!p2@PHB!0.50!11.35!PHB;;chr12:53614155..53614187,-!p3@RARG!0.50!4.97!RARG;;chr12:115121587..115121597,-!p10@TBX3!0.50!2.13!TBX3;;chr16:86612046..86612065,+!p3@FOXL1!0.50!2.13!FOXL1;;chr7:27196267..27196311,-!p1@HOXA7!0.50!2.13!HOXA7;;chr7:27239740..27239759,-!p2@HOXA13!0.50!2.13!HOXA13;;chr8:55370487..55370503,+!p1@SOX17!0.50!2.13!SOX17;;chr2:176969179..176969226,+!p2@HOXD11!0.50!2.13!HOXD11;;chr2:185463158..185463181,+!p2@ZNF804A!0.50!2.13!ZNF804A;;chr3:138665774..138665786,-!p5@FOXL2!0.50!2.13!FOXL2;;chr3:25469815..25469866,+!p3@RARB!0.50!2.13!RARB;;chr3:25470062..25470084,+!p4@RARB!0.50!2.13!RARB;;chr4:26323764..26323821,+!p15@RBPJ!0.50!2.13!RBPJ;;chr16:8962202..8962222,-!p3@CARHSP1!0.49!4.26!CARHSP1;;chr6:42419290..42419314,-!p5@TRERF1!0.49!2.84!TRERF1;;chr7:14028743..14028799,-!p3@ETV1!0.49!2.84!ETV1;;chr20:55204351..55204377,+!p1@TFAP2C!0.49!2.84!TFAP2C;;chr8:72756637..72756664,-!p3@MSC!0.49!2.48!MSC;;chr3:114343768..114343822,-!p1@ZBTB20!0.48!11.35!ZBTB20;;chr5:321810..321877,+!p1@AHRR!0.48!8.16!AHRR;;chr1:164528616..164528660,+!p5@PBX1!0.48!4.97!PBX1;;chr12:66218183..66218209,+!p4@HMGA2!0.48!4.61!HMGA2;;chr1:221052776..221052799,+!p1@HLX!0.48!4.26!HLX;;chr10:35484804..35484902,+!p2@CREM!0.47!9.58!CREM;;chr3:12329358..12329393,+!p3@PPARG!0.47!6.03!PPARG;;chr1:221052840..221052875,+!p4@HLX!0.47!2.48!HLX;;chr3:157823517..157823562,-!p1@SHOX2!0.47!2.13!SHOX2;;chr10:63853436..63853442,+!p4@ARID5B!0.46!13.48!ARID5B;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.46!11.35!TAL1;;chr10:63809134..63809145,+!p6@ARID5B!0.46!5.32!ARID5B;;chr3:12329397..12329433,+!p2@PPARG!0.46!5.32!PPARG;;chr20:32274150..32274166,-!p2@E2F1!0.46!4.26!E2F1;;chr19:47922750..47922795,-!p1@MEIS3!0.46!3.55!MEIS3;;chr1:8926369..8926385,-!p12@ENO1!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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000990;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000995;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003134;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003975;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 34: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Uterine%252c%2520donor3.CNhs11927.11466-119B8.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Uterine%252c%2520donor3.CNhs11927.11466-119B8.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Uterine%252c%2520donor3.CNhs11927.11466-119B8.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Uterine%252c%2520donor3.CNhs11927.11466-119B8.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Uterine%252c%2520donor3.CNhs11927.11466-119B8.hg38.nobarcode.ctss.bed.gz
|id=FF:11466-119B8
|id=FF:11466-119B8
|is_a=EFO:0002091;;FF:0000002;;FF:0000185;;FF:0000210
|is_a=EFO:0002091;;FF:0000185
|is_obsolete=
|library_id=CNhs11927
|library_id_phase_based=2:CNhs11927
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11466
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10002.GGCTAC.11466
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11466
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10002.GGCTAC.11466
|name=Smooth Muscle Cells - Uterine, donor3
|name=Smooth Muscle Cells - Uterine, donor3
|namespace=FANTOM5
|namespace=FANTOM5
Line 41: Line 65:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11927,LSID835,release010,COMPLETED
|profile_hcage=CNhs11927,LSID835,release010,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10002,,,
|profile_srnaseq=SRhi10002,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=119
|rna_box=119
|rna_catalog_number=N/A
|rna_catalog_number=N/A
Line 55: Line 82:
|rna_tube_id=119B8
|rna_tube_id=119B8
|rna_weight_ug=5.6
|rna_weight_ug=5.6
|rnaseq_library_id=SRhi10002.GGCTAC
|sample_age=
|sample_age=
|sample_category=primary cells
|sample_cell_catalog=C-14059
|sample_cell_catalog=C-14059
|sample_cell_line=
|sample_cell_line=
Line 68: Line 97:
|sample_ethnicity=
|sample_ethnicity=
|sample_experimental_condition=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;5.10665228664208e-240!GO:0005737;cytoplasm;1.65820946645981e-199!GO:0043226;organelle;7.68780127105881e-187!GO:0043229;intracellular organelle;1.41029569403601e-186!GO:0043231;intracellular membrane-bound organelle;1.07381183560112e-181!GO:0043227;membrane-bound organelle;2.49082404602931e-181!GO:0044422;organelle part;7.19845859000098e-152!GO:0044446;intracellular organelle part;2.16049161477376e-150!GO:0044444;cytoplasmic part;1.68802544423571e-145!GO:0032991;macromolecular complex;3.82996432361723e-106!GO:0030529;ribonucleoprotein complex;8.93560227133297e-93!GO:0044237;cellular metabolic process;6.65899558869586e-82!GO:0044238;primary metabolic process;2.63991830593064e-81!GO:0005515;protein binding;1.40786229282315e-73!GO:0005739;mitochondrion;1.57146048526826e-72!GO:0043170;macromolecule metabolic process;3.86399527270919e-72!GO:0043233;organelle lumen;6.0337782573421e-71!GO:0031974;membrane-enclosed lumen;6.0337782573421e-71!GO:0044428;nuclear part;9.56994458178516e-70!GO:0005634;nucleus;1.93860115181121e-66!GO:0003723;RNA binding;1.06699399443376e-63!GO:0005840;ribosome;4.97266845253508e-59!GO:0043234;protein complex;4.03318398201631e-53!GO:0003735;structural constituent of ribosome;6.44280348345406e-52!GO:0031090;organelle membrane;9.31889596355255e-51!GO:0006412;translation;1.05973519757042e-50!GO:0016043;cellular component organization and biogenesis;1.46515938207713e-50!GO:0044429;mitochondrial part;6.97186986650699e-49!GO:0006396;RNA processing;2.62726611008795e-47!GO:0019538;protein metabolic process;5.13262611968966e-47!GO:0015031;protein transport;2.937474484962e-45!GO:0009058;biosynthetic process;3.01783318577749e-44!GO:0033036;macromolecule localization;4.14508072665179e-44!GO:0031967;organelle envelope;5.84849822421543e-44!GO:0031975;envelope;1.10515382578396e-43!GO:0033279;ribosomal subunit;3.31567903125652e-43!GO:0044249;cellular biosynthetic process;2.70940540699414e-42!GO:0045184;establishment of protein localization;8.31832699989684e-42!GO:0005829;cytosol;1.37955068367082e-41!GO:0008104;protein localization;2.80008010945084e-41!GO:0044260;cellular macromolecule metabolic process;3.64407314191656e-41!GO:0044267;cellular protein metabolic process;1.86280206199396e-40!GO:0043228;non-membrane-bound organelle;1.88128499217464e-40!GO:0043232;intracellular non-membrane-bound organelle;1.88128499217464e-40!GO:0031981;nuclear lumen;2.97489413953667e-39!GO:0009059;macromolecule biosynthetic process;9.90917890823119e-38!GO:0046907;intracellular transport;3.16376887974819e-37!GO:0016071;mRNA metabolic process;9.24246016234054e-37!GO:0006996;organelle organization and biogenesis;1.1738229392744e-35!GO:0043283;biopolymer metabolic process;1.70728612064127e-35!GO:0008380;RNA splicing;1.94439700613677e-34!GO:0006397;mRNA processing;8.18262378264761e-33!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.14381125214172e-32!GO:0010467;gene expression;5.34562647990119e-32!GO:0065003;macromolecular complex assembly;6.80717026227911e-32!GO:0005740;mitochondrial envelope;1.68083065897334e-30!GO:0006259;DNA metabolic process;2.80708021873949e-30!GO:0006886;intracellular protein transport;2.9325542826545e-30!GO:0022607;cellular component assembly;2.39262947680091e-29!GO:0031966;mitochondrial membrane;5.42689184998675e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);6.76600122294666e-29!GO:0007049;cell cycle;1.93922824047669e-28!GO:0019866;organelle inner membrane;2.78471834202179e-28!GO:0022613;ribonucleoprotein complex biogenesis and assembly;7.59937883059423e-28!GO:0005743;mitochondrial inner membrane;2.84567101165431e-26!GO:0005681;spliceosome;8.35463497190947e-25!GO:0006119;oxidative phosphorylation;9.09689316657471e-25!GO:0051649;establishment of cellular localization;4.12973720516388e-24!GO:0051641;cellular localization;7.57249718725616e-24!GO:0044445;cytosolic part;1.34146514770967e-23!GO:0044455;mitochondrial membrane part;3.37311186356593e-23!GO:0005654;nucleoplasm;5.2675416105442e-23!GO:0022402;cell cycle process;1.10242210508914e-22!GO:0015935;small ribosomal subunit;3.2947741651188e-22!GO:0015934;large ribosomal subunit;4.38315107164279e-22!GO:0000278;mitotic cell cycle;8.8869036859004e-22!GO:0031980;mitochondrial lumen;9.00239061614488e-22!GO:0005759;mitochondrial matrix;9.00239061614488e-22!GO:0000166;nucleotide binding;9.05550676814856e-22!GO:0006457;protein folding;3.56607540704141e-21!GO:0005783;endoplasmic reticulum;5.06863065047491e-21!GO:0012505;endomembrane system;1.07208843011748e-20!GO:0016462;pyrophosphatase activity;1.9318194738416e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.03455148466286e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;3.04163295784473e-20!GO:0017111;nucleoside-triphosphatase activity;1.33266910936575e-19!GO:0048770;pigment granule;3.61709076408601e-19!GO:0042470;melanosome;3.61709076408601e-19!GO:0005746;mitochondrial respiratory chain;5.57356313257128e-19!GO:0005761;mitochondrial ribosome;9.75857301080152e-19!GO:0000313;organellar ribosome;9.75857301080152e-19!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.88930327477321e-18!GO:0006974;response to DNA damage stimulus;3.94413714737733e-18!GO:0044451;nucleoplasm part;4.75192506691306e-18!GO:0000502;proteasome complex (sensu Eukaryota);6.74699937007179e-18!GO:0000087;M phase of mitotic cell cycle;7.36242024809607e-18!GO:0051186;cofactor metabolic process;8.50483814479024e-18!GO:0007067;mitosis;1.50255531216389e-17!GO:0005694;chromosome;3.10631222050464e-17!GO:0005730;nucleolus;4.01750625761492e-17!GO:0050136;NADH dehydrogenase (quinone) activity;1.27114514455445e-16!GO:0003954;NADH dehydrogenase activity;1.27114514455445e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.27114514455445e-16!GO:0022618;protein-RNA complex assembly;1.27114514455445e-16!GO:0044432;endoplasmic reticulum part;1.44133124805918e-16!GO:0043285;biopolymer catabolic process;1.60329978168504e-16!GO:0044427;chromosomal part;2.94410654607255e-16!GO:0044265;cellular macromolecule catabolic process;5.75937973778387e-16!GO:0022403;cell cycle phase;7.60927535674678e-16!GO:0016874;ligase activity;8.87219103919967e-16!GO:0003676;nucleic acid binding;1.10028549040534e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;1.42599233638957e-15!GO:0006605;protein targeting;1.47801818603873e-15!GO:0032553;ribonucleotide binding;1.68178668587536e-15!GO:0032555;purine ribonucleotide binding;1.68178668587536e-15!GO:0009057;macromolecule catabolic process;1.68178668587536e-15!GO:0051301;cell division;2.01804029466619e-15!GO:0019941;modification-dependent protein catabolic process;2.34754393598323e-15!GO:0043632;modification-dependent macromolecule catabolic process;2.34754393598323e-15!GO:0017076;purine nucleotide binding;2.51202378653799e-15!GO:0006511;ubiquitin-dependent protein catabolic process;3.08425596025084e-15!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.72087371479971e-15!GO:0044257;cellular protein catabolic process;3.92146746615762e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.08823839733385e-15!GO:0044248;cellular catabolic process;5.52550461764414e-15!GO:0006281;DNA repair;5.77231611880398e-15!GO:0006512;ubiquitin cycle;8.7411609910972e-15!GO:0042775;organelle ATP synthesis coupled electron transport;8.7411609910972e-15!GO:0042773;ATP synthesis coupled electron transport;8.7411609910972e-15!GO:0030964;NADH dehydrogenase complex (quinone);8.81100286177875e-15!GO:0045271;respiratory chain complex I;8.81100286177875e-15!GO:0005747;mitochondrial respiratory chain complex I;8.81100286177875e-15!GO:0008135;translation factor activity, nucleic acid binding;1.14857019105083e-14!GO:0030163;protein catabolic process;1.29043469205785e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.43529917330333e-14!GO:0008134;transcription factor binding;1.75761434157714e-14!GO:0005635;nuclear envelope;2.7262975458577e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.77845060518761e-14!GO:0006732;coenzyme metabolic process;5.50402850074352e-14!GO:0009719;response to endogenous stimulus;6.8228973604429e-14!GO:0000279;M phase;9.21316409388927e-14!GO:0005794;Golgi apparatus;1.36575506842955e-13!GO:0048193;Golgi vesicle transport;1.39362340194214e-13!GO:0051082;unfolded protein binding;1.4533518872238e-13!GO:0005524;ATP binding;4.36933539373937e-13!GO:0009055;electron carrier activity;5.17236881437359e-13!GO:0051276;chromosome organization and biogenesis;5.52112640116898e-13!GO:0032559;adenyl ribonucleotide binding;7.87734176690235e-13!GO:0000074;regulation of progression through cell cycle;7.97538355897321e-13!GO:0051726;regulation of cell cycle;9.26863336639877e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;1.37130619702945e-12!GO:0000375;RNA splicing, via transesterification reactions;1.37130619702945e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.37130619702945e-12!GO:0030554;adenyl nucleotide binding;1.67598493669084e-12!GO:0031965;nuclear membrane;2.70308528129045e-12!GO:0042254;ribosome biogenesis and assembly;2.90567470613958e-12!GO:0005793;ER-Golgi intermediate compartment;4.30698137300359e-12!GO:0009259;ribonucleotide metabolic process;5.38810839543535e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;5.87735297256264e-12!GO:0044453;nuclear membrane part;6.28542817050412e-12!GO:0016192;vesicle-mediated transport;7.56844577467839e-12!GO:0006260;DNA replication;8.38712110238512e-12!GO:0006163;purine nucleotide metabolic process;1.49712484564025e-11!GO:0005789;endoplasmic reticulum membrane;2.28939079880438e-11!GO:0003743;translation initiation factor activity;3.77349690490133e-11!GO:0009150;purine ribonucleotide metabolic process;4.15947242421719e-11!GO:0015630;microtubule cytoskeleton;4.81513362013419e-11!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;5.15393514265567e-11!GO:0016070;RNA metabolic process;5.92262508590856e-11!GO:0006164;purine nucleotide biosynthetic process;1.33138790310342e-10!GO:0009260;ribonucleotide biosynthetic process;1.619410523514e-10!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.79161612135099e-10!GO:0006413;translational initiation;1.91796838684114e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;2.19777254579182e-10!GO:0006913;nucleocytoplasmic transport;2.86407436010263e-10!GO:0042623;ATPase activity, coupled;3.30159460993832e-10!GO:0009152;purine ribonucleotide biosynthetic process;3.59414697332217e-10!GO:0009199;ribonucleoside triphosphate metabolic process;3.72717838686373e-10!GO:0016887;ATPase activity;3.79656807575736e-10!GO:0006399;tRNA metabolic process;3.84155214642537e-10!GO:0009141;nucleoside triphosphate metabolic process;5.25517400576922e-10!GO:0003712;transcription cofactor activity;5.55984406821459e-10!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.9131316938488e-10!GO:0009144;purine nucleoside triphosphate metabolic process;5.9131316938488e-10!GO:0051169;nuclear transport;6.2065595754448e-10!GO:0006323;DNA packaging;6.40952679817752e-10!GO:0008565;protein transporter activity;6.71249611519426e-10!GO:0065004;protein-DNA complex assembly;7.85699925796731e-10!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;8.93478933560753e-10!GO:0009056;catabolic process;1.13918706906188e-09!GO:0006446;regulation of translational initiation;1.72743634868987e-09!GO:0043412;biopolymer modification;1.90571561119347e-09!GO:0015986;ATP synthesis coupled proton transport;3.04081649038178e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.04081649038178e-09!GO:0051188;cofactor biosynthetic process;3.05373290553157e-09!GO:0005643;nuclear pore;3.27690923441788e-09!GO:0016604;nuclear body;3.48313016691433e-09!GO:0009142;nucleoside triphosphate biosynthetic process;3.69879400153524e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.69879400153524e-09!GO:0000785;chromatin;3.92700015878807e-09!GO:0009117;nucleotide metabolic process;4.28286792590447e-09!GO:0045333;cellular respiration;5.29861849167385e-09!GO:0006461;protein complex assembly;5.65366761759402e-09!GO:0017038;protein import;5.94234376072398e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.98764109609199e-09!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.98764109609199e-09!GO:0019829;cation-transporting ATPase activity;7.33579897316004e-09!GO:0006333;chromatin assembly or disassembly;7.43452070813298e-09!GO:0009060;aerobic respiration;7.43494751198485e-09!GO:0046034;ATP metabolic process;8.49410359535887e-09!GO:0065002;intracellular protein transport across a membrane;9.12338515518435e-09!GO:0015078;hydrogen ion transmembrane transporter activity;1.04109003639332e-08!GO:0006888;ER to Golgi vesicle-mediated transport;1.31426161793749e-08!GO:0006364;rRNA processing;2.15171099565035e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.33422662683424e-08!GO:0004812;aminoacyl-tRNA ligase activity;2.33422662683424e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.33422662683424e-08!GO:0006464;protein modification process;3.08014787015477e-08!GO:0043038;amino acid activation;3.13362630147495e-08!GO:0006418;tRNA aminoacylation for protein translation;3.13362630147495e-08!GO:0043039;tRNA aminoacylation;3.13362630147495e-08!GO:0006334;nucleosome assembly;3.13362630147495e-08!GO:0016491;oxidoreductase activity;3.57396088762371e-08!GO:0016072;rRNA metabolic process;3.69432063239785e-08!GO:0012501;programmed cell death;3.7848963636499e-08!GO:0004386;helicase activity;3.7848963636499e-08!GO:0007005;mitochondrion organization and biogenesis;3.84276117253683e-08!GO:0008639;small protein conjugating enzyme activity;4.23814680116411e-08!GO:0048523;negative regulation of cellular process;4.82111477451359e-08!GO:0006915;apoptosis;5.23689090763956e-08!GO:0046930;pore complex;6.66021204187013e-08!GO:0030532;small nuclear ribonucleoprotein complex;6.66933925495314e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;7.53010425606399e-08!GO:0006754;ATP biosynthetic process;7.53011087629467e-08!GO:0006753;nucleoside phosphate metabolic process;7.53011087629467e-08!GO:0004842;ubiquitin-protein ligase activity;8.28105360733037e-08!GO:0005839;proteasome core complex (sensu Eukaryota);9.16322255014377e-08!GO:0019787;small conjugating protein ligase activity;9.30587496389316e-08!GO:0030120;vesicle coat;9.68903769584221e-08!GO:0030662;coated vesicle membrane;9.68903769584221e-08!GO:0043566;structure-specific DNA binding;1.01718494829732e-07!GO:0031497;chromatin assembly;1.01959547928941e-07!GO:0016469;proton-transporting two-sector ATPase complex;1.0341108547337e-07!GO:0005813;centrosome;1.03872389129664e-07!GO:0005788;endoplasmic reticulum lumen;1.45973727294935e-07!GO:0016607;nuclear speck;1.54932077964505e-07!GO:0051187;cofactor catabolic process;1.56019471360241e-07!GO:0005819;spindle;1.59342873196649e-07!GO:0003697;single-stranded DNA binding;1.61014243546393e-07!GO:0009108;coenzyme biosynthetic process;1.61949563615905e-07!GO:0005815;microtubule organizing center;1.67627108497161e-07!GO:0006099;tricarboxylic acid cycle;1.76095032505043e-07!GO:0046356;acetyl-CoA catabolic process;1.76095032505043e-07!GO:0043687;post-translational protein modification;1.85257007574534e-07!GO:0008026;ATP-dependent helicase activity;2.25724370801568e-07!GO:0048475;coated membrane;2.61721347319095e-07!GO:0030117;membrane coat;2.61721347319095e-07!GO:0000775;chromosome, pericentric region;2.67626713560845e-07!GO:0005768;endosome;2.98488551354858e-07!GO:0008219;cell death;3.03529512672912e-07!GO:0016265;death;3.03529512672912e-07!GO:0006403;RNA localization;3.47292460996431e-07!GO:0003924;GTPase activity;3.73051634296004e-07!GO:0009109;coenzyme catabolic process;4.44017743499213e-07!GO:0050657;nucleic acid transport;4.4636080657692e-07!GO:0051236;establishment of RNA localization;4.4636080657692e-07!GO:0050658;RNA transport;4.4636080657692e-07!GO:0016787;hydrolase activity;5.69898422357052e-07!GO:0048519;negative regulation of biological process;6.07078605359424e-07!GO:0016881;acid-amino acid ligase activity;6.26155477933182e-07!GO:0004298;threonine endopeptidase activity;6.73239660870241e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;6.95609514022343e-07!GO:0006084;acetyl-CoA metabolic process;7.28515424042303e-07!GO:0045786;negative regulation of progression through cell cycle;7.88419941983089e-07!GO:0006752;group transfer coenzyme metabolic process;1.25542314464912e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.33399592798796e-06!GO:0016779;nucleotidyltransferase activity;1.36320910534094e-06!GO:0006091;generation of precursor metabolites and energy;1.45660554497957e-06!GO:0005762;mitochondrial large ribosomal subunit;1.58589643547868e-06!GO:0000315;organellar large ribosomal subunit;1.58589643547868e-06!GO:0007051;spindle organization and biogenesis;1.73316824764996e-06!GO:0045259;proton-transporting ATP synthase complex;1.82814155627853e-06!GO:0005770;late endosome;2.12120571644813e-06!GO:0000314;organellar small ribosomal subunit;2.60911291037242e-06!GO:0005763;mitochondrial small ribosomal subunit;2.60911291037242e-06!GO:0016740;transferase activity;2.85444976142834e-06!GO:0016853;isomerase activity;2.95231161007906e-06!GO:0051246;regulation of protein metabolic process;3.10434543208839e-06!GO:0016023;cytoplasmic membrane-bound vesicle;3.24322517263918e-06!GO:0031988;membrane-bound vesicle;3.24976656236336e-06!GO:0051170;nuclear import;3.45333522437409e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.49625483216916e-06!GO:0006366;transcription from RNA polymerase II promoter;3.52941796917817e-06!GO:0000245;spliceosome assembly;3.83097872717017e-06!GO:0008654;phospholipid biosynthetic process;4.38771739307645e-06!GO:0031982;vesicle;5.27025298425888e-06!GO:0006606;protein import into nucleus;5.45389517044165e-06!GO:0044440;endosomal part;5.46820745503431e-06!GO:0010008;endosome membrane;5.46820745503431e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;5.57039075098111e-06!GO:0016859;cis-trans isomerase activity;5.61919240718656e-06!GO:0044431;Golgi apparatus part;5.61959912096507e-06!GO:0031410;cytoplasmic vesicle;5.99941879074058e-06!GO:0006613;cotranslational protein targeting to membrane;6.20888274465377e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;6.20888274465377e-06!GO:0032446;protein modification by small protein conjugation;6.35872539376727e-06!GO:0051329;interphase of mitotic cell cycle;6.60509251540316e-06!GO:0045454;cell redox homeostasis;7.59594007922187e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;8.48323490002947e-06!GO:0016567;protein ubiquitination;1.24267138484068e-05!GO:0051028;mRNA transport;1.51696177382507e-05!GO:0031252;leading edge;1.64724012996473e-05!GO:0007010;cytoskeleton organization and biogenesis;2.04180260266297e-05!GO:0006261;DNA-dependent DNA replication;2.22126003792712e-05!GO:0000151;ubiquitin ligase complex;2.25462369357563e-05!GO:0042981;regulation of apoptosis;2.28987441419738e-05!GO:0030867;rough endoplasmic reticulum membrane;2.28987441419738e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.30767655869594e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;2.45956190415502e-05!GO:0000075;cell cycle checkpoint;2.48676842553923e-05!GO:0043067;regulation of programmed cell death;2.53225610545565e-05!GO:0003713;transcription coactivator activity;2.86091957407714e-05!GO:0005773;vacuole;3.25386072914964e-05!GO:0006916;anti-apoptosis;3.30596633355448e-05!GO:0051325;interphase;3.49269163256767e-05!GO:0005525;GTP binding;3.54226944373955e-05!GO:0009165;nucleotide biosynthetic process;3.56313297150421e-05!GO:0031968;organelle outer membrane;3.67006706983423e-05!GO:0043069;negative regulation of programmed cell death;3.94163434306661e-05!GO:0003899;DNA-directed RNA polymerase activity;4.60549247497676e-05!GO:0005798;Golgi-associated vesicle;4.8178380239838e-05!GO:0019867;outer membrane;5.37801644629695e-05!GO:0043623;cellular protein complex assembly;5.41187595185992e-05!GO:0016568;chromatin modification;5.46671896860959e-05!GO:0006793;phosphorus metabolic process;5.6713529747566e-05!GO:0006796;phosphate metabolic process;5.6713529747566e-05!GO:0015980;energy derivation by oxidation of organic compounds;5.78457734132818e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;5.93936541709082e-05!GO:0043066;negative regulation of apoptosis;6.0246316510089e-05!GO:0016310;phosphorylation;6.05625830507205e-05!GO:0050794;regulation of cellular process;6.26007715570086e-05!GO:0005667;transcription factor complex;6.50918384640315e-05!GO:0000139;Golgi membrane;7.32397951351303e-05!GO:0003714;transcription corepressor activity;7.41796902953032e-05!GO:0043021;ribonucleoprotein binding;7.72018701909532e-05!GO:0000776;kinetochore;8.01467753190462e-05!GO:0016564;transcription repressor activity;8.41937539682714e-05!GO:0051427;hormone receptor binding;9.28479137669152e-05!GO:0046474;glycerophospholipid biosynthetic process;0.00012370251044244!GO:0006612;protein targeting to membrane;0.000125938931449806!GO:0003724;RNA helicase activity;0.000126982251546559!GO:0005769;early endosome;0.000129196728732195!GO:0016126;sterol biosynthetic process;0.000150522548422703!GO:0033116;ER-Golgi intermediate compartment membrane;0.000157222225463553!GO:0016563;transcription activator activity;0.000160113058103104!GO:0051789;response to protein stimulus;0.000163815028263984!GO:0006986;response to unfolded protein;0.000163815028263984!GO:0031324;negative regulation of cellular metabolic process;0.000165413011740248!GO:0006839;mitochondrial transport;0.000179317971267302!GO:0000786;nucleosome;0.000189788384631866!GO:0035257;nuclear hormone receptor binding;0.000193015150232633!GO:0000323;lytic vacuole;0.000205873869119506!GO:0005764;lysosome;0.000205873869119506!GO:0005741;mitochondrial outer membrane;0.000210879044235438!GO:0032561;guanyl ribonucleotide binding;0.000242908412122209!GO:0019001;guanyl nucleotide binding;0.000242908412122209!GO:0005048;signal sequence binding;0.000249303461668777!GO:0008094;DNA-dependent ATPase activity;0.000276142424790462!GO:0006626;protein targeting to mitochondrion;0.000286694346268365!GO:0006302;double-strand break repair;0.000293071151153641!GO:0005657;replication fork;0.000316083943165574!GO:0005885;Arp2/3 protein complex;0.000320356256729084!GO:0008250;oligosaccharyl transferase complex;0.000321374358900648!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000328490667637402!GO:0005791;rough endoplasmic reticulum;0.000356576925932139!GO:0005905;coated pit;0.000378643059732773!GO:0043681;protein import into mitochondrion;0.000387139113612058!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000402639933714523!GO:0004576;oligosaccharyl transferase activity;0.00041873621265889!GO:0030663;COPI coated vesicle membrane;0.000419988884267157!GO:0030126;COPI vesicle coat;0.000419988884267157!GO:0008361;regulation of cell size;0.000419988884267157!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00042522660391413!GO:0005874;microtubule;0.000443702010948106!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000460429337673143!GO:0007088;regulation of mitosis;0.00049832317743871!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000525704253893828!GO:0006414;translational elongation;0.000559816837713326!GO:0042802;identical protein binding;0.000564460417214739!GO:0043284;biopolymer biosynthetic process;0.000564853297437664!GO:0009892;negative regulation of metabolic process;0.0005884456070669!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000613655798837037!GO:0008610;lipid biosynthetic process;0.000613655798837037!GO:0019843;rRNA binding;0.000613655798837037!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000624594269643056!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000628670428424577!GO:0030133;transport vesicle;0.000633961730545725!GO:0016049;cell growth;0.000659554111279256!GO:0007093;mitotic cell cycle checkpoint;0.000706705511474655!GO:0000059;protein import into nucleus, docking;0.000747447597044309!GO:0051920;peroxiredoxin activity;0.000748394895656242!GO:0019899;enzyme binding;0.000753435073504277!GO:0007050;cell cycle arrest;0.000865155555003464!GO:0007052;mitotic spindle organization and biogenesis;0.000953768437852422!GO:0003690;double-stranded DNA binding;0.000962329487556598!GO:0046483;heterocycle metabolic process;0.00107176520396539!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00111466599370265!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00113034771648029!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00113034771648029!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00113034771648029!GO:0018196;peptidyl-asparagine modification;0.00117939818135474!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00117939818135474!GO:0016741;transferase activity, transferring one-carbon groups;0.00118355968003639!GO:0044262;cellular carbohydrate metabolic process;0.00118371404184009!GO:0006695;cholesterol biosynthetic process;0.00120483526467198!GO:0008168;methyltransferase activity;0.00121186731637583!GO:0007059;chromosome segregation;0.00127626225109543!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00128546694616789!GO:0001558;regulation of cell growth;0.0012912132986735!GO:0030176;integral to endoplasmic reticulum membrane;0.00129504935005054!GO:0006383;transcription from RNA polymerase III promoter;0.00130826883925274!GO:0016363;nuclear matrix;0.00132630137142925!GO:0030036;actin cytoskeleton organization and biogenesis;0.00137199983262792!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00137199983262792!GO:0046489;phosphoinositide biosynthetic process;0.0014531479184815!GO:0030137;COPI-coated vesicle;0.00145472090879344!GO:0030880;RNA polymerase complex;0.00145484093094363!GO:0008180;signalosome;0.00157095970515754!GO:0044452;nucleolar part;0.00158900325858067!GO:0008033;tRNA processing;0.00167461236242557!GO:0006950;response to stress;0.0016762067686448!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00168701959098832!GO:0006310;DNA recombination;0.0017531501499198!GO:0065009;regulation of a molecular function;0.0018335748180734!GO:0015631;tubulin binding;0.00184014103984039!GO:0008186;RNA-dependent ATPase activity;0.00186361181612796!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00190795450347552!GO:0051287;NAD binding;0.00197735065776024!GO:0003678;DNA helicase activity;0.00201086406325921!GO:0048500;signal recognition particle;0.00205066431560971!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00210529656215974!GO:0015399;primary active transmembrane transporter activity;0.00210529656215974!GO:0003684;damaged DNA binding;0.0021282355157761!GO:0006979;response to oxidative stress;0.00217452414477591!GO:0046467;membrane lipid biosynthetic process;0.00217948762503891!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00217948762503891!GO:0048471;perinuclear region of cytoplasm;0.00221322350406728!GO:0007006;mitochondrial membrane organization and biogenesis;0.0025450670814571!GO:0015992;proton transport;0.0027146316020537!GO:0031902;late endosome membrane;0.00314404964322788!GO:0006818;hydrogen transport;0.00316960658772376!GO:0009116;nucleoside metabolic process;0.00324618804260329!GO:0051087;chaperone binding;0.00324674356888113!GO:0009112;nucleobase metabolic process;0.00333752625740566!GO:0031072;heat shock protein binding;0.00334503549114354!GO:0051540;metal cluster binding;0.00335673495656418!GO:0051536;iron-sulfur cluster binding;0.00335673495656418!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00338710479724733!GO:0000428;DNA-directed RNA polymerase complex;0.00338710479724733!GO:0008047;enzyme activator activity;0.00340202546575762!GO:0007017;microtubule-based process;0.00340617856990348!GO:0051168;nuclear export;0.00343211194124696!GO:0048522;positive regulation of cellular process;0.00343503051105818!GO:0022890;inorganic cation transmembrane transporter activity;0.00351150965046597!GO:0008312;7S RNA binding;0.00351284519896929!GO:0008632;apoptotic program;0.00352031582209147!GO:0005684;U2-dependent spliceosome;0.00352550509793539!GO:0051052;regulation of DNA metabolic process;0.00354349707051691!GO:0030658;transport vesicle membrane;0.00359080426456743!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00359868904205957!GO:0015002;heme-copper terminal oxidase activity;0.00359868904205957!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00359868904205957!GO:0004129;cytochrome-c oxidase activity;0.00359868904205957!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00367180786695091!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00367180786695091!GO:0004177;aminopeptidase activity;0.00383145750962991!GO:0004527;exonuclease activity;0.00398662185329603!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00410983130913675!GO:0045047;protein targeting to ER;0.00410983130913675!GO:0050789;regulation of biological process;0.00429197348771276!GO:0003746;translation elongation factor activity;0.00435030152779034!GO:0001726;ruffle;0.00446823943588608!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.00449535561712196!GO:0004004;ATP-dependent RNA helicase activity;0.00458391535968407!GO:0005869;dynactin complex;0.00484447757600386!GO:0016481;negative regulation of transcription;0.00487641401274056!GO:0003729;mRNA binding;0.00489702533257639!GO:0006891;intra-Golgi vesicle-mediated transport;0.00492198552498756!GO:0016197;endosome transport;0.00513390140562545!GO:0006082;organic acid metabolic process;0.00549249305842545!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00555670497754397!GO:0035258;steroid hormone receptor binding;0.00560102732205178!GO:0019752;carboxylic acid metabolic process;0.00562126186840871!GO:0005876;spindle microtubule;0.0056235123443952!GO:0017166;vinculin binding;0.0056472462435902!GO:0031124;mRNA 3'-end processing;0.00566591298559497!GO:0032984;macromolecular complex disassembly;0.00585480526053957!GO:0050662;coenzyme binding;0.00594698602734182!GO:0005637;nuclear inner membrane;0.00596277204943723!GO:0043624;cellular protein complex disassembly;0.00611577691545583!GO:0000082;G1/S transition of mitotic cell cycle;0.00611984329330499!GO:0007243;protein kinase cascade;0.00614468709372935!GO:0048487;beta-tubulin binding;0.00614982417784303!GO:0030134;ER to Golgi transport vesicle;0.00617050820247851!GO:0006650;glycerophospholipid metabolic process;0.00617956301702049!GO:0051252;regulation of RNA metabolic process;0.00619091419491083!GO:0030118;clathrin coat;0.00636706183594671!GO:0006220;pyrimidine nucleotide metabolic process;0.00666533172631454!GO:0000049;tRNA binding;0.00670304919195027!GO:0030029;actin filament-based process;0.00671500668129348!GO:0030521;androgen receptor signaling pathway;0.00690827610020505!GO:0030132;clathrin coat of coated pit;0.00692926037288208!GO:0030659;cytoplasmic vesicle membrane;0.00730037129990435!GO:0006289;nucleotide-excision repair;0.00735771881085286!GO:0043022;ribosome binding;0.00741093615394805!GO:0043488;regulation of mRNA stability;0.00741093615394805!GO:0043487;regulation of RNA stability;0.00741093615394805!GO:0006497;protein amino acid lipidation;0.00749646035267595!GO:0008022;protein C-terminus binding;0.00753384920268007!GO:0022411;cellular component disassembly;0.00755052486418319!GO:0005096;GTPase activator activity;0.00758304204212507!GO:0006595;polyamine metabolic process;0.00763281865617598!GO:0030027;lamellipodium;0.00784040569721105!GO:0008139;nuclear localization sequence binding;0.00805352737971053!GO:0051539;4 iron, 4 sulfur cluster binding;0.00810877648074031!GO:0030127;COPII vesicle coat;0.0082399247360587!GO:0012507;ER to Golgi transport vesicle membrane;0.0082399247360587!GO:0000922;spindle pole;0.00836256428533129!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00840907335000132!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00840907335000132!GO:0000096;sulfur amino acid metabolic process;0.00849330674509957!GO:0016044;membrane organization and biogenesis;0.00900755374450094!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0090171151489345!GO:0007264;small GTPase mediated signal transduction;0.00925284682959332!GO:0003682;chromatin binding;0.00927472902454108!GO:0006402;mRNA catabolic process;0.00935401310139036!GO:0030660;Golgi-associated vesicle membrane;0.0094360713622314!GO:0006740;NADPH regeneration;0.00999856096474668!GO:0006098;pentose-phosphate shunt;0.00999856096474668!GO:0043241;protein complex disassembly;0.0103287109751621!GO:0006778;porphyrin metabolic process;0.0105752418623533!GO:0033013;tetrapyrrole metabolic process;0.0105752418623533!GO:0016272;prefoldin complex;0.0106653864733015!GO:0006352;transcription initiation;0.0106710410699545!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0108363600317315!GO:0031901;early endosome membrane;0.0108363600317315!GO:0007021;tubulin folding;0.0112862151901505!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0115463350639004!GO:0005862;muscle thin filament tropomyosin;0.0116295272145992!GO:0019206;nucleoside kinase activity;0.0119907317967993!GO:0005774;vacuolar membrane;0.0119907317967993!GO:0005832;chaperonin-containing T-complex;0.0119907317967993!GO:0006007;glucose catabolic process;0.0123437810746497!GO:0016251;general RNA polymerase II transcription factor activity;0.0125033253705766!GO:0033673;negative regulation of kinase activity;0.0126348119902012!GO:0006469;negative regulation of protein kinase activity;0.0126348119902012!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0128328241419957!GO:0030503;regulation of cell redox homeostasis;0.0128942874905783!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0128942874905783!GO:0043492;ATPase activity, coupled to movement of substances;0.0152733511551459!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0153137739501535!GO:0000339;RNA cap binding;0.0160472050520738!GO:0008092;cytoskeletal protein binding;0.0162206375467645!GO:0044433;cytoplasmic vesicle part;0.0163197889144549!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0164023109217105!GO:0051348;negative regulation of transferase activity;0.0166360876104253!GO:0006144;purine base metabolic process;0.0168291681886069!GO:0045045;secretory pathway;0.0168360746621984!GO:0006892;post-Golgi vesicle-mediated transport;0.0169752495176092!GO:0048037;cofactor binding;0.0169752495176092!GO:0008652;amino acid biosynthetic process;0.0169889780151955!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0173746495887316!GO:0030119;AP-type membrane coat adaptor complex;0.017474965637776!GO:0003711;transcription elongation regulator activity;0.017474965637776!GO:0031418;L-ascorbic acid binding;0.0175378118157476!GO:0006401;RNA catabolic process;0.0177221155876758!GO:0000910;cytokinesis;0.0177235531170624!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0178630127654622!GO:0000152;nuclear ubiquitin ligase complex;0.0178843872324538!GO:0006984;ER-nuclear signaling pathway;0.0185480400855129!GO:0006509;membrane protein ectodomain proteolysis;0.0186960992272244!GO:0033619;membrane protein proteolysis;0.0186960992272244!GO:0006118;electron transport;0.0188836190465356!GO:0005680;anaphase-promoting complex;0.0189292280431328!GO:0032508;DNA duplex unwinding;0.0189681575781097!GO:0032392;DNA geometric change;0.0189681575781097!GO:0050681;androgen receptor binding;0.0190875857805239!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0192036524837706!GO:0031123;RNA 3'-end processing;0.019243184241842!GO:0031577;spindle checkpoint;0.0197728306459874!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0201378221307565!GO:0042158;lipoprotein biosynthetic process;0.0202128052651647!GO:0004518;nuclease activity;0.0205727645171062!GO:0009119;ribonucleoside metabolic process;0.0209894619305415!GO:0000209;protein polyubiquitination;0.0210059691439924!GO:0043433;negative regulation of transcription factor activity;0.0212460017322571!GO:0000178;exosome (RNase complex);0.0213047434464518!GO:0016584;nucleosome positioning;0.0215551920026347!GO:0006506;GPI anchor biosynthetic process;0.0217313051411212!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0224386283692625!GO:0006520;amino acid metabolic process;0.0225325543851365!GO:0050790;regulation of catalytic activity;0.0226391342975822!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0227991458227618!GO:0007040;lysosome organization and biogenesis;0.0230253300741472!GO:0006268;DNA unwinding during replication;0.0238184853261168!GO:0006733;oxidoreduction coenzyme metabolic process;0.0238184853261168!GO:0031625;ubiquitin protein ligase binding;0.0238723434024619!GO:0004003;ATP-dependent DNA helicase activity;0.0242623169161291!GO:0004674;protein serine/threonine kinase activity;0.0243600434511624!GO:0040008;regulation of growth;0.0248222343195641!GO:0016860;intramolecular oxidoreductase activity;0.0254120556385169!GO:0030125;clathrin vesicle coat;0.0254120556385169!GO:0030665;clathrin coated vesicle membrane;0.0254120556385169!GO:0031371;ubiquitin conjugating enzyme complex;0.0255254205155649!GO:0006378;mRNA polyadenylation;0.0259412431203728!GO:0044437;vacuolar part;0.0263488920508202!GO:0008538;proteasome activator activity;0.0265995109919614!GO:0005875;microtubule associated complex;0.0266756518767099!GO:0007033;vacuole organization and biogenesis;0.0269618713347749!GO:0012506;vesicle membrane;0.027076878167191!GO:0051128;regulation of cellular component organization and biogenesis;0.0271963484198954!GO:0030131;clathrin adaptor complex;0.027482872055231!GO:0042168;heme metabolic process;0.0275704570288222!GO:0030508;thiol-disulfide exchange intermediate activity;0.0282889161676924!GO:0019798;procollagen-proline dioxygenase activity;0.0283381075928383!GO:0007569;cell aging;0.0287429498600901!GO:0006607;NLS-bearing substrate import into nucleus;0.0287429498600901!GO:0031543;peptidyl-proline dioxygenase activity;0.0292180442665742!GO:0008408;3'-5' exonuclease activity;0.0293937273542606!GO:0008601;protein phosphatase type 2A regulator activity;0.0300959158266178!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0300959158266178!GO:0008243;plasminogen activator activity;0.0302746560157802!GO:0008147;structural constituent of bone;0.0302938558915995!GO:0005758;mitochondrial intermembrane space;0.0306951636860333!GO:0006505;GPI anchor metabolic process;0.0309083393699004!GO:0031970;organelle envelope lumen;0.0310289578259119!GO:0030518;steroid hormone receptor signaling pathway;0.0313144314909086!GO:0031529;ruffle organization and biogenesis;0.0313275312305493!GO:0007034;vacuolar transport;0.0313275312305493!GO:0030433;ER-associated protein catabolic process;0.0314214608228165!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0314214608228165!GO:0005784;translocon complex;0.0315996018850715!GO:0016408;C-acyltransferase activity;0.0323385137933176!GO:0007346;regulation of progression through mitotic cell cycle;0.0323740844144364!GO:0045792;negative regulation of cell size;0.0329132804474121!GO:0009303;rRNA transcription;0.0329132804474121!GO:0006779;porphyrin biosynthetic process;0.0331319332145747!GO:0033014;tetrapyrrole biosynthetic process;0.0331319332145747!GO:0006739;NADP metabolic process;0.0332389316646937!GO:0006275;regulation of DNA replication;0.0338341185856235!GO:0006376;mRNA splice site selection;0.0339232256730213!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0339232256730213!GO:0005669;transcription factor TFIID complex;0.0347533326888122!GO:0030496;midbody;0.0347849739576067!GO:0015036;disulfide oxidoreductase activity;0.0356255350843803!GO:0009124;nucleoside monophosphate biosynthetic process;0.0357885760012218!GO:0009123;nucleoside monophosphate metabolic process;0.0357885760012218!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0371488288608659!GO:0005765;lysosomal membrane;0.0372490880889149!GO:0000159;protein phosphatase type 2A complex;0.0373679340808034!GO:0003756;protein disulfide isomerase activity;0.0373679340808034!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0373679340808034!GO:0006611;protein export from nucleus;0.0373782456128018!GO:0030384;phosphoinositide metabolic process;0.0376416331505706!GO:0000287;magnesium ion binding;0.0379680380182949!GO:0030911;TPR domain binding;0.0380646991325221!GO:0016125;sterol metabolic process;0.0380733787627195!GO:0043189;H4/H2A histone acetyltransferase complex;0.0381114301029602!GO:0051101;regulation of DNA binding;0.0392593678055162!GO:0050811;GABA receptor binding;0.0404360585178015!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0404360585178015!GO:0010257;NADH dehydrogenase complex assembly;0.0404360585178015!GO:0033108;mitochondrial respiratory chain complex assembly;0.0404360585178015!GO:0030308;negative regulation of cell growth;0.0406369334782707!GO:0046128;purine ribonucleoside metabolic process;0.0410931283327255!GO:0042278;purine nucleoside metabolic process;0.0410931283327255!GO:0043130;ubiquitin binding;0.0412169695406561!GO:0032182;small conjugating protein binding;0.0412169695406561!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0412297049198453!GO:0006405;RNA export from nucleus;0.0412297049198453!GO:0003923;GPI-anchor transamidase activity;0.0412297049198453!GO:0016255;attachment of GPI anchor to protein;0.0412297049198453!GO:0042765;GPI-anchor transamidase complex;0.0412297049198453!GO:0042393;histone binding;0.0421715181268131!GO:0009262;deoxyribonucleotide metabolic process;0.0430509871557628!GO:0006213;pyrimidine nucleoside metabolic process;0.0434385375935131!GO:0042770;DNA damage response, signal transduction;0.0442473602407659!GO:0030032;lamellipodium biogenesis;0.0445414750761824!GO:0006720;isoprenoid metabolic process;0.0445414750761824!GO:0000819;sister chromatid segregation;0.0446994445680805!GO:0006769;nicotinamide metabolic process;0.0450427218408582!GO:0047485;protein N-terminus binding;0.045093138184012!GO:0035267;NuA4 histone acetyltransferase complex;0.0456414297187554!GO:0005099;Ras GTPase activator activity;0.0458343073796803!GO:0009967;positive regulation of signal transduction;0.0462577306543234!GO:0030031;cell projection biogenesis;0.0463135164657396!GO:0033559;unsaturated fatty acid metabolic process;0.0463555292175582!GO:0006636;unsaturated fatty acid biosynthetic process;0.0463555292175582!GO:0000118;histone deacetylase complex;0.0472043602812017!GO:0000070;mitotic sister chromatid segregation;0.0477957774055371!GO:0009066;aspartate family amino acid metabolic process;0.0495749810202001!GO:0006354;RNA elongation;0.0499520112279791
|sample_id=11466
|sample_id=11466
|sample_note=
|sample_note=
Line 75: Line 105:
|sample_tissue=uterus
|sample_tissue=uterus
|top_motifs=CDC5L:1.41879385178;GFI1:1.33845119361;GZF1:1.18336733714;POU3F1..4:1.16138884358;YY1:1.14657233307;NR1H4:1.10379564439;ZNF238:1.10347714004;ALX4:1.07869444653;HOX{A4,D4}:1.07160589603;TBP:0.76532407571;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.760020609242;HSF1,2:0.699199251567;TAL1_TCF{3,4,12}:0.675824228093;PBX1:0.672618181434;TBX4,5:0.662071339057;MYBL2:0.649780130419;GFI1B:0.629016917271;HMX1:0.626900549327;NFIX:0.611499956308;PDX1:0.610180970171;SRF:0.60905700136;ADNP_IRX_SIX_ZHX:0.604182873958;E2F1..5:0.589463441479;TEAD1:0.584798948872;TLX1..3_NFIC{dimer}:0.581741014092;FOXQ1:0.574200342849;NKX2-2,8:0.556311072171;NR3C1:0.53198009422;NKX3-1:0.522923625998;EN1,2:0.518563433697;ELK1,4_GABP{A,B1}:0.50703914767;ATF6:0.500993205583;HES1:0.46147531036;IKZF1:0.44560289427;HBP1_HMGB_SSRP1_UBTF:0.445290017562;NR5A1,2:0.443944161464;NFE2L2:0.437102257822;NKX6-1,2:0.43415551284;BACH2:0.422659068071;NFY{A,B,C}:0.415334044793;TFCP2:0.411642892354;TFAP4:0.410000972618;SMAD1..7,9:0.409775169599;MAFB:0.384952692643;ZBTB6:0.38397186199;GTF2I:0.372599842976;ZNF143:0.368652992151;HOX{A5,B5}:0.337680051946;CEBPA,B_DDIT3:0.326881066081;EBF1:0.315110454523;FOS_FOS{B,L1}_JUN{B,D}:0.313486562749;MZF1:0.308760534536;NFATC1..3:0.304371362607;NFE2:0.303976320462;NFE2L1:0.299679808619;KLF4:0.297060019556;GCM1,2:0.29138650664;HAND1,2:0.291356843913;RXR{A,B,G}:0.287342939436;FOSL2:0.279730190476;LHX3,4:0.263399643082;ESR1:0.261217671975;GTF2A1,2:0.255012179525;bHLH_family:0.251385185332;MYB:0.245019631421;STAT5{A,B}:0.236854779763;ARID5B:0.230116353489;POU5F1:0.227076987257;UFEwm:0.22435133114;ZIC1..3:0.213985710695;T:0.205080377292;AHR_ARNT_ARNT2:0.204758605915;NHLH1,2:0.203766583978;LEF1_TCF7_TCF7L1,2:0.194975637573;XBP1:0.179789440596;RFX1:0.168403126002;CRX:0.167203522918;SPZ1:0.166185000151;HLF:0.15200609777;ESRRA:0.151007306333;XCPE1{core}:0.147143256815;NKX3-2:0.146374847262;SOX17:0.124684842188;ZNF423:0.124499085313;ZNF148:0.12306577192;TLX2:0.120955012879;PRRX1,2:0.115688946177;HOX{A6,A7,B6,B7}:0.111239227436;PAX1,9:0.102283299128;JUN:0.101040757432;HOXA9_MEIS1:0.0818837085957;POU2F1..3:0.0696866803372;MYFfamily:0.0597604598945;HNF1A:0.0414624067557;PRDM1:0.0357580974616;POU1F1:0.025266355815;HIF1A:0.0184378341354;NRF1:0.0101914959191;DMAP1_NCOR{1,2}_SMARC:-0.0019964166564;STAT1,3:-0.0283306361704;SP1:-0.0327343304888;HNF4A_NR2F1,2:-0.033789067603;NANOG:-0.0344472497792;ELF1,2,4:-0.0408987959316;GLI1..3:-0.0436882909501;TEF:-0.0473684923778;SREBF1,2:-0.0522911911019;AIRE:-0.0540823491407;OCT4_SOX2{dimer}:-0.0579544535993;AR:-0.0639424264675;TP53:-0.0718311623861;SOX{8,9,10}:-0.0739907679204;DBP:-0.0795353325495;POU6F1:-0.0857433925889;FOXD3:-0.114567727967;HIC1:-0.125418872187;ATF2:-0.125872520615;PATZ1:-0.130112635707;FOXA2:-0.135870059995;RUNX1..3:-0.139958906935;RREB1:-0.154519488475;MEF2{A,B,C,D}:-0.169718745288;RXRA_VDR{dimer}:-0.176248972851;PPARG:-0.181918811808;TFAP2{A,C}:-0.183632907544;MAZ:-0.186562461773;PAX3,7:-0.196898528835;ZBTB16:-0.197700334297;GATA4:-0.214460431244;PAX4:-0.223488594128;TFDP1:-0.243127627434;IRF1,2:-0.245671928712;RFX2..5_RFXANK_RFXAP:-0.250941565658;NANOG{mouse}:-0.261935396724;ZNF384:-0.264944822037;REST:-0.266522596358;NKX2-3_NKX2-5:-0.279395700822;CREB1:-0.298532186965;CDX1,2,4:-0.304621731957;FOXL1:-0.337776107795;IRF7:-0.35114841385;FOXM1:-0.374144901363;PAX2:-0.383959094495;LMO2:-0.385841213477;PAX5:-0.408864695073;ETS1,2:-0.411011448715;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.411841872629;NFKB1_REL_RELA:-0.416757033418;ATF5_CREB3:-0.418723445097;FOXO1,3,4:-0.424583538161;CUX2:-0.434602560631;MED-1{core}:-0.435744675296;PAX8:-0.442429583397;STAT2,4,6:-0.447250762386;TGIF1:-0.448009073561;NFIL3:-0.452005189907;GATA6:-0.460309723686;SPIB:-0.462225109812;EGR1..3:-0.486994173542;FOX{I1,J2}:-0.494592334815;ONECUT1,2:-0.4987471587;EVI1:-0.50105268095;SPI1:-0.508773188173;NKX2-1,4:-0.517579138581;NR6A1:-0.566497899305;PAX6:-0.588803662518;SOX5:-0.597287362767;RORA:-0.598296942008;MTE{core}:-0.629089726699;RBPJ:-0.633789577858;SOX2:-0.63638329104;MTF1:-0.637745895105;ALX1:-0.638308081539;ZFP161:-0.64139001026;SNAI1..3:-0.646650685336;MYOD1:-0.672118880309;TOPORS:-0.675092975897;FOXP1:-0.696579982207;TFAP2B:-0.708754402066;EP300:-0.75974355078;FOXN1:-0.78325080509;FOX{D1,D2}:-0.800618353094;HMGA1,2:-0.802409351416;ATF4:-0.813078920658;VSX1,2:-0.854295885955;ZEB1:-0.95670191606;FOXP3:-0.987307989136;FOX{F1,F2,J1}:-1.00819778388;BREu{core}:-1.03026283332;PITX1..3:-1.0875200706;IKZF2:-1.09526003635;BPTF:-1.31064392547
|top_motifs=CDC5L:1.41879385178;GFI1:1.33845119361;GZF1:1.18336733714;POU3F1..4:1.16138884358;YY1:1.14657233307;NR1H4:1.10379564439;ZNF238:1.10347714004;ALX4:1.07869444653;HOX{A4,D4}:1.07160589603;TBP:0.76532407571;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.760020609242;HSF1,2:0.699199251567;TAL1_TCF{3,4,12}:0.675824228093;PBX1:0.672618181434;TBX4,5:0.662071339057;MYBL2:0.649780130419;GFI1B:0.629016917271;HMX1:0.626900549327;NFIX:0.611499956308;PDX1:0.610180970171;SRF:0.60905700136;ADNP_IRX_SIX_ZHX:0.604182873958;E2F1..5:0.589463441479;TEAD1:0.584798948872;TLX1..3_NFIC{dimer}:0.581741014092;FOXQ1:0.574200342849;NKX2-2,8:0.556311072171;NR3C1:0.53198009422;NKX3-1:0.522923625998;EN1,2:0.518563433697;ELK1,4_GABP{A,B1}:0.50703914767;ATF6:0.500993205583;HES1:0.46147531036;IKZF1:0.44560289427;HBP1_HMGB_SSRP1_UBTF:0.445290017562;NR5A1,2:0.443944161464;NFE2L2:0.437102257822;NKX6-1,2:0.43415551284;BACH2:0.422659068071;NFY{A,B,C}:0.415334044793;TFCP2:0.411642892354;TFAP4:0.410000972618;SMAD1..7,9:0.409775169599;MAFB:0.384952692643;ZBTB6:0.38397186199;GTF2I:0.372599842976;ZNF143:0.368652992151;HOX{A5,B5}:0.337680051946;CEBPA,B_DDIT3:0.326881066081;EBF1:0.315110454523;FOS_FOS{B,L1}_JUN{B,D}:0.313486562749;MZF1:0.308760534536;NFATC1..3:0.304371362607;NFE2:0.303976320462;NFE2L1:0.299679808619;KLF4:0.297060019556;GCM1,2:0.29138650664;HAND1,2:0.291356843913;RXR{A,B,G}:0.287342939436;FOSL2:0.279730190476;LHX3,4:0.263399643082;ESR1:0.261217671975;GTF2A1,2:0.255012179525;bHLH_family:0.251385185332;MYB:0.245019631421;STAT5{A,B}:0.236854779763;ARID5B:0.230116353489;POU5F1:0.227076987257;UFEwm:0.22435133114;ZIC1..3:0.213985710695;T:0.205080377292;AHR_ARNT_ARNT2:0.204758605915;NHLH1,2:0.203766583978;LEF1_TCF7_TCF7L1,2:0.194975637573;XBP1:0.179789440596;RFX1:0.168403126002;CRX:0.167203522918;SPZ1:0.166185000151;HLF:0.15200609777;ESRRA:0.151007306333;XCPE1{core}:0.147143256815;NKX3-2:0.146374847262;SOX17:0.124684842188;ZNF423:0.124499085313;ZNF148:0.12306577192;TLX2:0.120955012879;PRRX1,2:0.115688946177;HOX{A6,A7,B6,B7}:0.111239227436;PAX1,9:0.102283299128;JUN:0.101040757432;HOXA9_MEIS1:0.0818837085957;POU2F1..3:0.0696866803372;MYFfamily:0.0597604598945;HNF1A:0.0414624067557;PRDM1:0.0357580974616;POU1F1:0.025266355815;HIF1A:0.0184378341354;NRF1:0.0101914959191;DMAP1_NCOR{1,2}_SMARC:-0.0019964166564;STAT1,3:-0.0283306361704;SP1:-0.0327343304888;HNF4A_NR2F1,2:-0.033789067603;NANOG:-0.0344472497792;ELF1,2,4:-0.0408987959316;GLI1..3:-0.0436882909501;TEF:-0.0473684923778;SREBF1,2:-0.0522911911019;AIRE:-0.0540823491407;OCT4_SOX2{dimer}:-0.0579544535993;AR:-0.0639424264675;TP53:-0.0718311623861;SOX{8,9,10}:-0.0739907679204;DBP:-0.0795353325495;POU6F1:-0.0857433925889;FOXD3:-0.114567727967;HIC1:-0.125418872187;ATF2:-0.125872520615;PATZ1:-0.130112635707;FOXA2:-0.135870059995;RUNX1..3:-0.139958906935;RREB1:-0.154519488475;MEF2{A,B,C,D}:-0.169718745288;RXRA_VDR{dimer}:-0.176248972851;PPARG:-0.181918811808;TFAP2{A,C}:-0.183632907544;MAZ:-0.186562461773;PAX3,7:-0.196898528835;ZBTB16:-0.197700334297;GATA4:-0.214460431244;PAX4:-0.223488594128;TFDP1:-0.243127627434;IRF1,2:-0.245671928712;RFX2..5_RFXANK_RFXAP:-0.250941565658;NANOG{mouse}:-0.261935396724;ZNF384:-0.264944822037;REST:-0.266522596358;NKX2-3_NKX2-5:-0.279395700822;CREB1:-0.298532186965;CDX1,2,4:-0.304621731957;FOXL1:-0.337776107795;IRF7:-0.35114841385;FOXM1:-0.374144901363;PAX2:-0.383959094495;LMO2:-0.385841213477;PAX5:-0.408864695073;ETS1,2:-0.411011448715;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.411841872629;NFKB1_REL_RELA:-0.416757033418;ATF5_CREB3:-0.418723445097;FOXO1,3,4:-0.424583538161;CUX2:-0.434602560631;MED-1{core}:-0.435744675296;PAX8:-0.442429583397;STAT2,4,6:-0.447250762386;TGIF1:-0.448009073561;NFIL3:-0.452005189907;GATA6:-0.460309723686;SPIB:-0.462225109812;EGR1..3:-0.486994173542;FOX{I1,J2}:-0.494592334815;ONECUT1,2:-0.4987471587;EVI1:-0.50105268095;SPI1:-0.508773188173;NKX2-1,4:-0.517579138581;NR6A1:-0.566497899305;PAX6:-0.588803662518;SOX5:-0.597287362767;RORA:-0.598296942008;MTE{core}:-0.629089726699;RBPJ:-0.633789577858;SOX2:-0.63638329104;MTF1:-0.637745895105;ALX1:-0.638308081539;ZFP161:-0.64139001026;SNAI1..3:-0.646650685336;MYOD1:-0.672118880309;TOPORS:-0.675092975897;FOXP1:-0.696579982207;TFAP2B:-0.708754402066;EP300:-0.75974355078;FOXN1:-0.78325080509;FOX{D1,D2}:-0.800618353094;HMGA1,2:-0.802409351416;ATF4:-0.813078920658;VSX1,2:-0.854295885955;ZEB1:-0.95670191606;FOXP3:-0.987307989136;FOX{F1,F2,J1}:-1.00819778388;BREu{core}:-1.03026283332;PITX1..3:-1.0875200706;IKZF2:-1.09526003635;BPTF:-1.31064392547
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11466-119B8;search_select_hide=table117:FF:11466-119B8
}}
}}

Latest revision as of 18:03, 4 June 2020

Name:Smooth Muscle Cells - Uterine, donor3
Species:Human (Homo sapiens)
Library ID:CNhs11927
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueuterus
dev stageNA
sexfemale
ageNA
cell typesmooth muscle cell
cell lineNA
companyPromocell
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberN/A
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005777
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11927 CAGE DRX008515 DRR009387
Accession ID Hg19

Library idBAMCTSS
CNhs11927 DRZ000812 DRZ002197
Accession ID Hg38

Library idBAMCTSS
CNhs11927 DRZ012162 DRZ013547
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005777
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10002.GGCTAC sRNA-Seq DRX036998 DRR041364
Accession ID Hg19

Library idBAMCTSS
SRhi10002.GGCTAC DRZ007006


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0751
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.425
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.122
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.114
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.132
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.233
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.093
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.126
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.638
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.132
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.381
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.132
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.11
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.233
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.132
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.0765
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11927

Jaspar motifP-value
MA0002.20.669
MA0003.10.369
MA0004.10.69
MA0006.10.49
MA0007.10.132
MA0009.10.662
MA0014.10.848
MA0017.10.796
MA0018.22.61324e-4
MA0019.10.631
MA0024.10.00155
MA0025.10.163
MA0027.10.495
MA0028.10.00209
MA0029.10.45
MA0030.10.136
MA0031.10.0457
MA0035.20.119
MA0038.10.0401
MA0039.20.259
MA0040.10.537
MA0041.10.514
MA0042.10.932
MA0043.10.00414
MA0046.10.975
MA0047.20.424
MA0048.10.17
MA0050.10.16
MA0051.10.3
MA0052.10.939
MA0055.10.0544
MA0057.10.0855
MA0058.10.562
MA0059.10.266
MA0060.10.00992
MA0061.10.9
MA0062.20.488
MA0065.20.847
MA0066.10.67
MA0067.10.236
MA0068.10.747
MA0069.10.0957
MA0070.10.549
MA0071.10.498
MA0072.10.888
MA0073.10.953
MA0074.10.588
MA0076.10.00492
MA0077.10.12
MA0078.10.153
MA0079.20.297
MA0080.21.60797e-7
MA0081.10.00597
MA0083.10.00531
MA0084.10.913
MA0087.10.543
MA0088.10.00474
MA0090.10.0645
MA0091.10.488
MA0092.10.464
MA0093.10.532
MA0099.26.25114e-9
MA0100.10.426
MA0101.10.0268
MA0102.20.0922
MA0103.10.00145
MA0104.20.995
MA0105.10.0332
MA0106.10.39
MA0107.10.0179
MA0108.20.00457
MA0111.10.172
MA0112.20.0302
MA0113.10.803
MA0114.10.961
MA0115.10.888
MA0116.10.117
MA0117.10.58
MA0119.10.348
MA0122.10.896
MA0124.10.939
MA0125.10.145
MA0131.10.8
MA0135.10.797
MA0136.17.40613e-4
MA0137.20.724
MA0138.20.691
MA0139.10.0459
MA0140.10.594
MA0141.10.386
MA0142.10.208
MA0143.10.223
MA0144.10.713
MA0145.10.0975
MA0146.10.215
MA0147.10.702
MA0148.10.334
MA0149.10.696
MA0150.10.0851
MA0152.10.0101
MA0153.10.789
MA0154.10.496
MA0155.10.353
MA0156.10.268
MA0157.10.0422
MA0159.10.394
MA0160.10.756
MA0162.10.115
MA0163.10.0422
MA0164.10.478
MA0258.10.694
MA0259.10.353



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11927

Novel motifP-value
10.486
100.139
1000.698
1010.681
1020.902
1030.51
1040.627
1050.356
1060.999
1070.156
1080.211
1090.0612
110.156
1109.92908e-4
1110.197
1120.742
1130.00287
1140.483
1150.914
1160.277
1170.0167
1180.582
1190.988
120.949
1200.116
1210.951
1220.432
1231.13479e-4
1240.893
1250.53
1260.452
1270.678
1280.761
1290.963
130.178
1300.00823
1310.902
1320.748
1330.336
1340.439
1350.72
1360.838
1370.464
1380.137
1390.00618
140.222
1400.114
1410.37
1420.356
1430.969
1440.418
1450.523
1460.397
1470.115
1480.875
1490.425
150.679
1500.448
1510.569
1520.495
1530.242
1540.214
1550.00326
1560.857
1570.41
1580.00134
1590.0379
160.083
1600.257
1610.518
1620.813
1630.82
1640.977
1650.773
1660.409
1670.454
1680.979
1690.0821
170.935
180.142
190.0876
20.555
200.612
210.596
220.122
230.407
240.113
250.221
260.276
270.438
280.205
290.169
30.38
300.278
310.711
320.349
330.326
340.49
350.86
360.378
370.0948
380.675
390.244
40.394
400.813
410.12
420.47
430.547
440.937
450.546
460.36
470.755
480.293
490.523
50.596
500.598
510.376
520.44
530.0268
540.912
550.897
560.704
570.473
580.533
590.399
60.302
600.618
610.957
620.873
630.968
640.539
650.578
660.0927
670.599
680.277
690.471
70.356
700.476
710.0735
720.917
730.218
740.473
750.151
760.232
770.153
780.167
790.743
80.408
800.415
810.766
820.405
830.295
840.754
850.145
860.54
870.0102
880.301
890.169
90.184
900.745
910.119
920.43
930.732
940.79
950.201
960.644
970.417
980.555
990.0164



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11927


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0002601 (uterine smooth muscle cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000995 (uterus)
0003134 (female reproductive organ)
0005156 (reproductive structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0003975 (internal female genitalia)
0004175 (internal genitalia)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0000474 (female reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000185 (human uterine smooth muscle cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

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