FF:10035-101E8: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005480 | ||
|accession_numbers=CAGE;DRX008699;DRR009571;DRZ000996;DRZ002381;DRZ012346;DRZ013731 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0000200,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0010317,UBERON:0001017,UBERON:0007190,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010035 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/paracentral%2520gyrus%252c%2520adult%252c%2520pool1.CNhs10642.10035-101E8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/paracentral%2520gyrus%252c%2520adult%252c%2520pool1.CNhs10642.10035-101E8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/paracentral%2520gyrus%252c%2520adult%252c%2520pool1.CNhs10642.10035-101E8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/paracentral%2520gyrus%252c%2520adult%252c%2520pool1.CNhs10642.10035-101E8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/paracentral%2520gyrus%252c%2520adult%252c%2520pool1.CNhs10642.10035-101E8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10035-101E8 | |id=FF:10035-101E8 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0010035 | ||
|is_obsolete= | |||
|library_id=CNhs10642 | |||
|library_id_phase_based=2:CNhs10642 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10035 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10035 | |||
|name=paracentral gyrus, adult, pool1 | |name=paracentral gyrus, adult, pool1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10642,LSID658,release008,COMPLETED | |profile_hcage=CNhs10642,LSID658,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=101 | |rna_box=101 | ||
|rna_catalog_number=Cat:636574 | |rna_catalog_number=Cat:636574 | ||
| Line 54: | Line 76: | ||
|rna_rin= | |rna_rin= | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.01E+10 | ||
|rna_weight_ug=50 | |rna_weight_ug=50 | ||
|sample_age= | |sample_age= | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;6.03669500546537e-298!GO:0005737;cytoplasm;1.2718113228141e-157!GO:0044444;cytoplasmic part;8.1783878274616e-105!GO:0043226;organelle;1.28328804124406e-87!GO:0043229;intracellular organelle;3.5797626647793e-87!GO:0043227;membrane-bound organelle;1.1470370773261e-82!GO:0043231;intracellular membrane-bound organelle;1.57945381454012e-82!GO:0044422;organelle part;4.02102244161145e-61!GO:0005515;protein binding;1.0175080743776e-60!GO:0044446;intracellular organelle part;3.08630309533555e-60!GO:0032991;macromolecular complex;5.06675768508474e-54!GO:0016043;cellular component organization and biogenesis;1.05291141207386e-43!GO:0005739;mitochondrion;6.3957091177419e-42!GO:0033036;macromolecule localization;2.35262247307854e-41!GO:0031090;organelle membrane;4.18685508453821e-41!GO:0015031;protein transport;7.7326333524373e-41!GO:0008104;protein localization;4.94960757015249e-38!GO:0045184;establishment of protein localization;3.20703918249198e-37!GO:0003723;RNA binding;1.4116873410228e-33!GO:0030529;ribonucleoprotein complex;1.49214658196025e-33!GO:0044429;mitochondrial part;1.03399180897032e-31!GO:0043234;protein complex;3.06808026345258e-31!GO:0046907;intracellular transport;4.24309690817896e-31!GO:0051641;cellular localization;1.77266668570395e-29!GO:0051649;establishment of cellular localization;3.13710487462105e-29!GO:0016192;vesicle-mediated transport;3.23399442838065e-28!GO:0043233;organelle lumen;1.51267924829708e-27!GO:0031974;membrane-enclosed lumen;1.51267924829708e-27!GO:0031975;envelope;1.87740772804627e-26!GO:0031967;organelle envelope;2.74940652932736e-26!GO:0019538;protein metabolic process;1.05985084956717e-24!GO:0044428;nuclear part;1.85635528376091e-24!GO:0006886;intracellular protein transport;3.37140287763689e-23!GO:0005740;mitochondrial envelope;6.81501177157794e-22!GO:0005794;Golgi apparatus;9.01527534010692e-22!GO:0044260;cellular macromolecule metabolic process;1.67950411573189e-21!GO:0006119;oxidative phosphorylation;1.67950411573189e-21!GO:0031966;mitochondrial membrane;2.15311785407053e-21!GO:0044238;primary metabolic process;2.35591995144269e-21!GO:0016071;mRNA metabolic process;2.48890160318106e-21!GO:0005829;cytosol;5.04397362957638e-21!GO:0031982;vesicle;6.349682465352e-21!GO:0044267;cellular protein metabolic process;6.37770560677174e-21!GO:0031410;cytoplasmic vesicle;2.99739648610846e-20!GO:0044237;cellular metabolic process;6.30175589071775e-20!GO:0006396;RNA processing;6.52570684581624e-20!GO:0031988;membrane-bound vesicle;7.58407277108578e-20!GO:0016023;cytoplasmic membrane-bound vesicle;3.60562827115819e-19!GO:0008380;RNA splicing;3.64954868365835e-19!GO:0019866;organelle inner membrane;8.75521516852143e-19!GO:0043170;macromolecule metabolic process;1.37027852921796e-18!GO:0005840;ribosome;2.17272374704474e-18!GO:0005743;mitochondrial inner membrane;2.2745509699477e-18!GO:0006397;mRNA processing;6.16960402844103e-18!GO:0006996;organelle organization and biogenesis;1.64735539832357e-17!GO:0006512;ubiquitin cycle;5.06842805889972e-17!GO:0012505;endomembrane system;3.48779894020241e-16!GO:0000166;nucleotide binding;3.75844548672317e-16!GO:0044455;mitochondrial membrane part;1.41687368927927e-15!GO:0009058;biosynthetic process;2.55252201806787e-15!GO:0065003;macromolecular complex assembly;2.58636071791276e-15!GO:0043412;biopolymer modification;2.59926883461779e-15!GO:0005746;mitochondrial respiratory chain;4.47051747678375e-15!GO:0006464;protein modification process;1.3648001391415e-14!GO:0006412;translation;1.3648001391415e-14!GO:0006810;transport;1.74652429036916e-14!GO:0003735;structural constituent of ribosome;1.89775138412974e-14!GO:0005634;nucleus;2.21826799722514e-14!GO:0031981;nuclear lumen;2.21826799722514e-14!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.76586808429088e-14!GO:0016817;hydrolase activity, acting on acid anhydrides;3.3089256591122e-14!GO:0016874;ligase activity;3.56263079538547e-14!GO:0043687;post-translational protein modification;3.58462726761508e-14!GO:0016462;pyrophosphatase activity;3.62034184212764e-14!GO:0045045;secretory pathway;5.97245153357118e-14!GO:0022607;cellular component assembly;1.17180178094459e-13!GO:0050136;NADH dehydrogenase (quinone) activity;1.30874415102226e-13!GO:0003954;NADH dehydrogenase activity;1.30874415102226e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.30874415102226e-13!GO:0017111;nucleoside-triphosphatase activity;2.44885551337809e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.71343158409965e-13!GO:0007264;small GTPase mediated signal transduction;5.17737045218324e-13!GO:0048770;pigment granule;5.21971620695642e-13!GO:0042470;melanosome;5.21971620695642e-13!GO:0030135;coated vesicle;5.21971620695642e-13!GO:0032553;ribonucleotide binding;6.18320884710516e-13!GO:0032555;purine ribonucleotide binding;6.18320884710516e-13!GO:0005681;spliceosome;7.6053819658955e-13!GO:0006457;protein folding;2.19953808154666e-12!GO:0048193;Golgi vesicle transport;3.18907973296837e-12!GO:0031980;mitochondrial lumen;3.8692385313196e-12!GO:0005759;mitochondrial matrix;3.8692385313196e-12!GO:0017076;purine nucleotide binding;5.14997898588535e-12!GO:0042775;organelle ATP synthesis coupled electron transport;6.68746611062377e-12!GO:0042773;ATP synthesis coupled electron transport;6.68746611062377e-12!GO:0030964;NADH dehydrogenase complex (quinone);8.2449580543748e-12!GO:0045271;respiratory chain complex I;8.2449580543748e-12!GO:0005747;mitochondrial respiratory chain complex I;8.2449580543748e-12!GO:0051234;establishment of localization;8.36923153480724e-12!GO:0044249;cellular biosynthetic process;1.26405267118749e-11!GO:0009059;macromolecule biosynthetic process;1.43048267830524e-11!GO:0051179;localization;1.6587478877511e-11!GO:0033279;ribosomal subunit;1.67116045632034e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.69602029264147e-11!GO:0044431;Golgi apparatus part;3.97929883678857e-11!GO:0019829;cation-transporting ATPase activity;6.45701666908486e-11!GO:0007399;nervous system development;9.52989622623789e-11!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.04160329265833e-10!GO:0043005;neuron projection;1.15420643774319e-10!GO:0008092;cytoskeletal protein binding;1.24092453609378e-10!GO:0005768;endosome;1.47132233565772e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.60216538900478e-10!GO:0043283;biopolymer metabolic process;2.19105167641135e-10!GO:0051603;proteolysis involved in cellular protein catabolic process;2.21293835256317e-10!GO:0030695;GTPase regulator activity;2.4325796377466e-10!GO:0005783;endoplasmic reticulum;2.58502976885729e-10!GO:0006511;ubiquitin-dependent protein catabolic process;2.95877341847431e-10!GO:0019941;modification-dependent protein catabolic process;3.85685767169836e-10!GO:0043632;modification-dependent macromolecule catabolic process;3.85685767169836e-10!GO:0044257;cellular protein catabolic process;4.5654943511218e-10!GO:0005083;small GTPase regulator activity;4.65302138090749e-10!GO:0006793;phosphorus metabolic process;4.75198736525168e-10!GO:0006796;phosphate metabolic process;4.75198736525168e-10!GO:0003924;GTPase activity;5.69285168132093e-10!GO:0051082;unfolded protein binding;6.60615218259495e-10!GO:0006605;protein targeting;7.17262866363853e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.28563551430882e-09!GO:0022618;protein-RNA complex assembly;1.59072475478707e-09!GO:0044265;cellular macromolecule catabolic process;1.64278095430622e-09!GO:0008639;small protein conjugating enzyme activity;1.70569850429418e-09!GO:0032940;secretion by cell;1.70797065706602e-09!GO:0008565;protein transporter activity;1.94034555350631e-09!GO:0030136;clathrin-coated vesicle;2.08155270898268e-09!GO:0005654;nucleoplasm;2.66988878672648e-09!GO:0008135;translation factor activity, nucleic acid binding;2.67328235537446e-09!GO:0019787;small conjugating protein ligase activity;2.78943978166717e-09!GO:0004842;ubiquitin-protein ligase activity;3.16410309156426e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.77093871369622e-09!GO:0005525;GTP binding;4.94952232217693e-09!GO:0016044;membrane organization and biogenesis;5.9264600153716e-09!GO:0051186;cofactor metabolic process;6.56116501835981e-09!GO:0015986;ATP synthesis coupled proton transport;7.86584330849603e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;7.86584330849603e-09!GO:0000502;proteasome complex (sensu Eukaryota);1.21752678062366e-08!GO:0007010;cytoskeleton organization and biogenesis;1.53840078376017e-08!GO:0000139;Golgi membrane;1.63913145690642e-08!GO:0044445;cytosolic part;1.72899819894791e-08!GO:0044248;cellular catabolic process;2.15661254686766e-08!GO:0044451;nucleoplasm part;2.33757720760178e-08!GO:0016881;acid-amino acid ligase activity;3.68167372967995e-08!GO:0030163;protein catabolic process;4.38013829082064e-08!GO:0043285;biopolymer catabolic process;5.37458854006687e-08!GO:0008134;transcription factor binding;8.16777626726363e-08!GO:0006461;protein complex assembly;1.0522063149912e-07!GO:0009060;aerobic respiration;1.17716596628612e-07!GO:0046034;ATP metabolic process;1.29008317308003e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.32293808687604e-07!GO:0045333;cellular respiration;1.52969038427771e-07!GO:0032559;adenyl ribonucleotide binding;1.56421391637787e-07!GO:0032561;guanyl ribonucleotide binding;1.83474764360671e-07!GO:0019001;guanyl nucleotide binding;1.83474764360671e-07!GO:0015631;tubulin binding;1.93370824194801e-07!GO:0043228;non-membrane-bound organelle;2.19951073141496e-07!GO:0043232;intracellular non-membrane-bound organelle;2.19951073141496e-07!GO:0048471;perinuclear region of cytoplasm;2.32304298514756e-07!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.91674525968404e-07!GO:0019717;synaptosome;3.03402047878676e-07!GO:0009057;macromolecule catabolic process;3.29340147363943e-07!GO:0048475;coated membrane;3.79616608094425e-07!GO:0030117;membrane coat;3.79616608094425e-07!GO:0016310;phosphorylation;3.81007109610206e-07!GO:0015935;small ribosomal subunit;4.17123937931414e-07!GO:0009141;nucleoside triphosphate metabolic process;4.63509527282372e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.70589202978543e-07!GO:0044440;endosomal part;4.81923591167652e-07!GO:0010008;endosome membrane;4.81923591167652e-07!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;4.84502619716789e-07!GO:0006163;purine nucleotide metabolic process;4.84502619716789e-07!GO:0006754;ATP biosynthetic process;4.84502619716789e-07!GO:0006753;nucleoside phosphate metabolic process;4.84502619716789e-07!GO:0005524;ATP binding;5.20754947749939e-07!GO:0016469;proton-transporting two-sector ATPase complex;5.27859090114169e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;6.24554538174309e-07!GO:0009144;purine nucleoside triphosphate metabolic process;6.24554538174309e-07!GO:0009199;ribonucleoside triphosphate metabolic process;7.48806395447804e-07!GO:0009150;purine ribonucleotide metabolic process;7.82634494001908e-07!GO:0007242;intracellular signaling cascade;7.88427981126063e-07!GO:0030036;actin cytoskeleton organization and biogenesis;8.03597765188398e-07!GO:0015078;hydrogen ion transmembrane transporter activity;9.30332911325153e-07!GO:0030554;adenyl nucleotide binding;9.43788456792754e-07!GO:0008287;protein serine/threonine phosphatase complex;9.65249112722262e-07!GO:0006732;coenzyme metabolic process;1.04355191457729e-06!GO:0006164;purine nucleotide biosynthetic process;1.16407259581914e-06!GO:0006446;regulation of translational initiation;1.38599074942479e-06!GO:0019226;transmission of nerve impulse;1.41789849893361e-06!GO:0005761;mitochondrial ribosome;1.45189415320862e-06!GO:0000313;organellar ribosome;1.45189415320862e-06!GO:0009259;ribonucleotide metabolic process;1.46225846171838e-06!GO:0003743;translation initiation factor activity;1.48113710628059e-06!GO:0009152;purine ribonucleotide biosynthetic process;1.80032280969488e-06!GO:0006413;translational initiation;2.06541913485944e-06!GO:0030425;dendrite;2.08545547074934e-06!GO:0044432;endoplasmic reticulum part;2.17340638653724e-06!GO:0000398;nuclear mRNA splicing, via spliceosome;2.46177191681684e-06!GO:0000375;RNA splicing, via transesterification reactions;2.46177191681684e-06!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.46177191681684e-06!GO:0031965;nuclear membrane;2.57712241484887e-06!GO:0006099;tricarboxylic acid cycle;2.60159287151934e-06!GO:0046356;acetyl-CoA catabolic process;2.60159287151934e-06!GO:0005905;coated pit;3.07018586070494e-06!GO:0008021;synaptic vesicle;3.082306810444e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.14676822475918e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.14676822475918e-06!GO:0007265;Ras protein signal transduction;3.27192094651008e-06!GO:0015630;microtubule cytoskeleton;3.60471448267645e-06!GO:0006913;nucleocytoplasmic transport;3.63283090534833e-06!GO:0030029;actin filament-based process;3.72876985697151e-06!GO:0009142;nucleoside triphosphate biosynthetic process;3.75492897679554e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.75492897679554e-06!GO:0009055;electron carrier activity;3.78812614892496e-06!GO:0016604;nuclear body;3.82536050459298e-06!GO:0016607;nuclear speck;4.3838024382509e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;4.81509198097705e-06!GO:0051169;nuclear transport;5.22058789672443e-06!GO:0009260;ribonucleotide biosynthetic process;6.47754558802692e-06!GO:0005770;late endosome;6.57927853330748e-06!GO:0005798;Golgi-associated vesicle;6.7222976959449e-06!GO:0019899;enzyme binding;7.42314887880715e-06!GO:0009109;coenzyme catabolic process;8.14342606367967e-06!GO:0051056;regulation of small GTPase mediated signal transduction;8.8040078533108e-06!GO:0006084;acetyl-CoA metabolic process;9.16487588352382e-06!GO:0006897;endocytosis;9.26127593628945e-06!GO:0010324;membrane invagination;9.26127593628945e-06!GO:0005635;nuclear envelope;1.09144652597828e-05!GO:0045259;proton-transporting ATP synthase complex;1.26458013431497e-05!GO:0031252;leading edge;1.30773929889097e-05!GO:0010467;gene expression;1.30773929889097e-05!GO:0005769;early endosome;1.36435192356491e-05!GO:0022890;inorganic cation transmembrane transporter activity;1.36435192356491e-05!GO:0030120;vesicle coat;1.49830949587272e-05!GO:0030662;coated vesicle membrane;1.49830949587272e-05!GO:0032446;protein modification by small protein conjugation;1.59589310361973e-05!GO:0003779;actin binding;1.68282983992399e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.74262539549539e-05!GO:0005789;endoplasmic reticulum membrane;1.93542198402201e-05!GO:0005874;microtubule;1.97082995950431e-05!GO:0042623;ATPase activity, coupled;2.31891453161628e-05!GO:0016567;protein ubiquitination;2.3380074176183e-05!GO:0051187;cofactor catabolic process;2.7150380813085e-05!GO:0008654;phospholipid biosynthetic process;3.02385415695103e-05!GO:0015934;large ribosomal subunit;3.29341985088341e-05!GO:0016887;ATPase activity;3.72515899632903e-05!GO:0048489;synaptic vesicle transport;5.39322743365046e-05!GO:0008047;enzyme activator activity;5.58226094962266e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;5.99882180715779e-05!GO:0015399;primary active transmembrane transporter activity;5.99882180715779e-05!GO:0046467;membrane lipid biosynthetic process;6.18906863166008e-05!GO:0005096;GTPase activator activity;7.8224953909902e-05!GO:0009056;catabolic process;8.2675198105315e-05!GO:0005730;nucleolus;8.36222130412633e-05!GO:0007268;synaptic transmission;8.5219557984939e-05!GO:0030133;transport vesicle;9.31955241806581e-05!GO:0051128;regulation of cellular component organization and biogenesis;9.38018652011952e-05!GO:0008017;microtubule binding;0.000102137987043987!GO:0017038;protein import;0.000109839621145249!GO:0006888;ER to Golgi vesicle-mediated transport;0.000128885263586862!GO:0006650;glycerophospholipid metabolic process;0.00013471760567223!GO:0016301;kinase activity;0.000152534304013551!GO:0043492;ATPase activity, coupled to movement of substances;0.000173086526306614!GO:0006613;cotranslational protein targeting to membrane;0.000183076417336938!GO:0003712;transcription cofactor activity;0.000193404213401587!GO:0005773;vacuole;0.000196504226131678!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000224345800200136!GO:0006643;membrane lipid metabolic process;0.000241248691196755!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000245278144006676!GO:0030118;clathrin coat;0.00025070443309336!GO:0016311;dephosphorylation;0.000260989572307124!GO:0007269;neurotransmitter secretion;0.000271577109731228!GO:0000151;ubiquitin ligase complex;0.0002754514330136!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00027939727727941!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);0.00027939727727941!GO:0046578;regulation of Ras protein signal transduction;0.000286079751536469!GO:0015980;energy derivation by oxidation of organic compounds;0.00029953141410206!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000345987885520236!GO:0051188;cofactor biosynthetic process;0.000350852824993947!GO:0005085;guanyl-nucleotide exchange factor activity;0.000350852824993947!GO:0016740;transferase activity;0.000361791285624317!GO:0006403;RNA localization;0.000364019046585711!GO:0005643;nuclear pore;0.000409802426907489!GO:0006752;group transfer coenzyme metabolic process;0.000434784871162177!GO:0004721;phosphoprotein phosphatase activity;0.000452426280391482!GO:0050657;nucleic acid transport;0.000478138051096721!GO:0051236;establishment of RNA localization;0.000478138051096721!GO:0050658;RNA transport;0.000478138051096721!GO:0044453;nuclear membrane part;0.000488176943786809!GO:0030027;lamellipodium;0.000510414019869355!GO:0019902;phosphatase binding;0.000525301936352844!GO:0000902;cell morphogenesis;0.000526643534995084!GO:0032989;cellular structure morphogenesis;0.000526643534995084!GO:0005793;ER-Golgi intermediate compartment;0.000562985581926709!GO:0048523;negative regulation of cellular process;0.000574318285406173!GO:0030384;phosphoinositide metabolic process;0.00058193003238925!GO:0016791;phosphoric monoester hydrolase activity;0.000591216865898021!GO:0007019;microtubule depolymerization;0.000591216865898021!GO:0051246;regulation of protein metabolic process;0.000620964876811687!GO:0045055;regulated secretory pathway;0.00064970455248763!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000667351786265451!GO:0019208;phosphatase regulator activity;0.000675652309460141!GO:0005741;mitochondrial outer membrane;0.000675652309460141!GO:0031072;heat shock protein binding;0.000683763610002634!GO:0000245;spliceosome assembly;0.000708229055721858!GO:0016197;endosome transport;0.00071567092290875!GO:0000159;protein phosphatase type 2A complex;0.000757136749426947!GO:0030427;site of polarized growth;0.000776351975760514!GO:0006470;protein amino acid dephosphorylation;0.000780989128797509!GO:0008601;protein phosphatase type 2A regulator activity;0.000833411118254767!GO:0016568;chromatin modification;0.000854682429952678!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000996907977222104!GO:0030426;growth cone;0.000998423315441424!GO:0001505;regulation of neurotransmitter levels;0.00105674815889367!GO:0004722;protein serine/threonine phosphatase activity;0.00106165642734952!GO:0003729;mRNA binding;0.00108101094784568!GO:0030424;axon;0.00111166555609716!GO:0005516;calmodulin binding;0.00118790482244775!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.00124989383907587!GO:0004674;protein serine/threonine kinase activity;0.00140989339961991!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);0.00141906573302345!GO:0045786;negative regulation of progression through cell cycle;0.00145680825281443!GO:0043623;cellular protein complex assembly;0.00153083407754738!GO:0019867;outer membrane;0.00156596555652629!GO:0031968;organelle outer membrane;0.00159736500133331!GO:0005938;cell cortex;0.0016639068617303!GO:0022406;membrane docking;0.0017035089301497!GO:0048278;vesicle docking;0.0017035089301497!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00171899673491351!GO:0009108;coenzyme biosynthetic process;0.00174481710149033!GO:0050767;regulation of neurogenesis;0.00178779659411786!GO:0016050;vesicle organization and biogenesis;0.00180556842838561!GO:0006904;vesicle docking during exocytosis;0.00185459109389977!GO:0030054;cell junction;0.00185459109389977!GO:0016126;sterol biosynthetic process;0.00189215504099877!GO:0006325;establishment and/or maintenance of chromatin architecture;0.00189215504099877!GO:0046488;phosphatidylinositol metabolic process;0.00189897398065331!GO:0048167;regulation of synaptic plasticity;0.00198614218646378!GO:0031114;regulation of microtubule depolymerization;0.00199434743332314!GO:0007026;negative regulation of microtubule depolymerization;0.00199434743332314!GO:0031902;late endosome membrane;0.00206303238124611!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00208003274690647!GO:0007266;Rho protein signal transduction;0.0021229863682318!GO:0006891;intra-Golgi vesicle-mediated transport;0.00212919461835258!GO:0000323;lytic vacuole;0.00213439377206641!GO:0005764;lysosome;0.00213439377206641!GO:0019888;protein phosphatase regulator activity;0.00213439377206641!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00217094742906439!GO:0012506;vesicle membrane;0.00219869932779867!GO:0048487;beta-tubulin binding;0.00220028803234174!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.00221103922356704!GO:0006612;protein targeting to membrane;0.00221103922356704!GO:0043566;structure-specific DNA binding;0.00225868873236955!GO:0051129;negative regulation of cellular component organization and biogenesis;0.00234885728261815!GO:0006892;post-Golgi vesicle-mediated transport;0.00235830598989477!GO:0005869;dynactin complex;0.00235830598989477!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00235830598989477!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00235830598989477!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00235830598989477!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00237126405562417!GO:0051087;chaperone binding;0.00261336173693182!GO:0005774;vacuolar membrane;0.00262394657660903!GO:0005875;microtubule associated complex;0.00263578587810551!GO:0003697;single-stranded DNA binding;0.00271317827855206!GO:0008026;ATP-dependent helicase activity;0.00296017107432652!GO:0009966;regulation of signal transduction;0.00306062503107626!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00307735295151444!GO:0004812;aminoacyl-tRNA ligase activity;0.00307735295151444!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00307735295151444!GO:0008610;lipid biosynthetic process;0.00314705624066112!GO:0003724;RNA helicase activity;0.00333862601752631!GO:0048519;negative regulation of biological process;0.00338649234202544!GO:0006644;phospholipid metabolic process;0.00338960991085598!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.00347041501093592!GO:0048699;generation of neurons;0.00354981069571181!GO:0009117;nucleotide metabolic process;0.00359365901909814!GO:0031901;early endosome membrane;0.00384002888658363!GO:0065002;intracellular protein transport across a membrane;0.00384785509220056!GO:0043209;myelin sheath;0.00391974939088061!GO:0008154;actin polymerization and/or depolymerization;0.0039854504405376!GO:0032011;ARF protein signal transduction;0.00409859944452658!GO:0032012;regulation of ARF protein signal transduction;0.00409859944452658!GO:0006606;protein import into nucleus;0.00412892062010389!GO:0046474;glycerophospholipid biosynthetic process;0.00438159650847191!GO:0030660;Golgi-associated vesicle membrane;0.00450032482150525!GO:0051170;nuclear import;0.00462792938002505!GO:0044433;cytoplasmic vesicle part;0.00462792938002505!GO:0050803;regulation of synapse structure and activity;0.0046309232872806!GO:0043038;amino acid activation;0.00471678677185357!GO:0006418;tRNA aminoacylation for protein translation;0.00471678677185357!GO:0043039;tRNA aminoacylation;0.00471678677185357!GO:0016564;transcription repressor activity;0.00471919404688304!GO:0005048;signal sequence binding;0.00481615313440513!GO:0051028;mRNA transport;0.00534503480389452!GO:0051168;nuclear export;0.00534503480389452!GO:0006665;sphingolipid metabolic process;0.00534503480389452!GO:0022008;neurogenesis;0.00534503480389452!GO:0019903;protein phosphatase binding;0.00551766524617203!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.00551766524617203!GO:0004667;prostaglandin-D synthase activity;0.00551766524617203!GO:0050802;circadian sleep/wake cycle, sleep;0.00551766524617203!GO:0022410;circadian sleep/wake cycle process;0.00551766524617203!GO:0042749;regulation of circadian sleep/wake cycle;0.00551766524617203!GO:0007272;ensheathment of neurons;0.00552792781105824!GO:0008366;axon ensheathment;0.00552792781105824!GO:0003714;transcription corepressor activity;0.00552792781105824!GO:0043087;regulation of GTPase activity;0.00564014099112524!GO:0007017;microtubule-based process;0.00587516934306396!GO:0006323;DNA packaging;0.00606059672114043!GO:0006695;cholesterol biosynthetic process;0.00607129223678488!GO:0030658;transport vesicle membrane;0.00619699330380368!GO:0051427;hormone receptor binding;0.00621813835485376!GO:0050839;cell adhesion molecule binding;0.00633171786540647!GO:0005099;Ras GTPase activator activity;0.00639432844828986!GO:0004386;helicase activity;0.00639432844828986!GO:0030182;neuron differentiation;0.00648721192054194!GO:0050811;GABA receptor binding;0.00689404492845331!GO:0030320;cellular monovalent inorganic anion homeostasis;0.00701467880664219!GO:0055083;monovalent inorganic anion homeostasis;0.00701467880664219!GO:0055064;chloride ion homeostasis;0.00701467880664219!GO:0030644;cellular chloride ion homeostasis;0.00701467880664219!GO:0051540;metal cluster binding;0.00701467880664219!GO:0051536;iron-sulfur cluster binding;0.00701467880664219!GO:0006607;NLS-bearing substrate import into nucleus;0.00701467880664219!GO:0030258;lipid modification;0.00763127628535946!GO:0043021;ribonucleoprotein binding;0.00769764316314856!GO:0042578;phosphoric ester hydrolase activity;0.00770535902261615!GO:0044448;cell cortex part;0.00774707258205776!GO:0001508;regulation of action potential;0.00787616658384733!GO:0051261;protein depolymerization;0.00792337900990427!GO:0005001;transmembrane receptor protein tyrosine phosphatase activity;0.00809467904778441!GO:0019198;transmembrane receptor protein phosphatase activity;0.00809467904778441!GO:0005765;lysosomal membrane;0.00846516373017992!GO:0051920;peroxiredoxin activity;0.00862635104353511!GO:0044456;synapse part;0.00878572789967577!GO:0019887;protein kinase regulator activity;0.0090620706020284!GO:0000287;magnesium ion binding;0.00912972081389526!GO:0048500;signal recognition particle;0.00925094668369896!GO:0030865;cortical cytoskeleton organization and biogenesis;0.00954793314945341!GO:0030867;rough endoplasmic reticulum membrane;0.0096752263672696!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.010129542867833!GO:0044437;vacuolar part;0.0101691771780558!GO:0035257;nuclear hormone receptor binding;0.0105782770060364!GO:0030137;COPI-coated vesicle;0.0106385687661328!GO:0030532;small nuclear ribonucleoprotein complex;0.0109604152776492!GO:0005839;proteasome core complex (sensu Eukaryota);0.0111656933566412!GO:0006414;translational elongation;0.0114762308167601!GO:0000314;organellar small ribosomal subunit;0.0119023187141543!GO:0005763;mitochondrial small ribosomal subunit;0.0119023187141543!GO:0003746;translation elongation factor activity;0.0121837941836945!GO:0031109;microtubule polymerization or depolymerization;0.0123204381183587!GO:0005791;rough endoplasmic reticulum;0.0124463333505908!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0124782266426143!GO:0030132;clathrin coat of coated pit;0.0126202333429365!GO:0030659;cytoplasmic vesicle membrane;0.0126603029980679!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0134217687981471!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0134217687981471!GO:0015629;actin cytoskeleton;0.013665551480319!GO:0030041;actin filament polymerization;0.0137036176075749!GO:0033673;negative regulation of kinase activity;0.0141786751420456!GO:0006469;negative regulation of protein kinase activity;0.0141786751420456!GO:0035035;histone acetyltransferase binding;0.015269405407858!GO:0001578;microtubule bundle formation;0.0155544555847544!GO:0009165;nucleotide biosynthetic process;0.0156118069198217!GO:0006818;hydrogen transport;0.0156335687787798!GO:0030742;GTP-dependent protein binding;0.01609898739953!GO:0046489;phosphoinositide biosynthetic process;0.0161591583603259!GO:0030125;clathrin vesicle coat;0.0161756314418915!GO:0030665;clathrin coated vesicle membrane;0.0161756314418915!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0164899420290022!GO:0005086;ARF guanyl-nucleotide exchange factor activity;0.0165179317249574!GO:0046930;pore complex;0.0165179317249574!GO:0006887;exocytosis;0.0165763683898284!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.0172495870345006!GO:0048666;neuron development;0.0175314257658533!GO:0001726;ruffle;0.017825462176919!GO:0042254;ribosome biogenesis and assembly;0.0178484127309178!GO:0008186;RNA-dependent ATPase activity;0.0186334854772176!GO:0007034;vacuolar transport;0.019101266762194!GO:0060052;neurofilament cytoskeleton organization and biogenesis;0.019101266762194!GO:0008180;signalosome;0.0191153113781918!GO:0000904;cellular morphogenesis during differentiation;0.0192566211304864!GO:0045296;cadherin binding;0.0192903013922471!GO:0005813;centrosome;0.0192903013922471!GO:0031124;mRNA 3'-end processing;0.0196239023152732!GO:0019207;kinase regulator activity;0.019828366269629!GO:0008250;oligosaccharyl transferase complex;0.020019090367563!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.020503068435013!GO:0045047;protein targeting to ER;0.020503068435013!GO:0006402;mRNA catabolic process;0.0205273659820177!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.020767333324309!GO:0003713;transcription coactivator activity;0.0208725132940174!GO:0005092;GDP-dissociation inhibitor activity;0.0209944920497203!GO:0008139;nuclear localization sequence binding;0.021389619301582!GO:0007611;learning and/or memory;0.0214594180137207!GO:0015992;proton transport;0.0214594180137207!GO:0035258;steroid hormone receptor binding;0.0216346756288888!GO:0005885;Arp2/3 protein complex;0.021708872189996!GO:0030030;cell projection organization and biogenesis;0.021708872189996!GO:0048858;cell projection morphogenesis;0.021708872189996!GO:0032990;cell part morphogenesis;0.021708872189996!GO:0019904;protein domain specific binding;0.0217296263753558!GO:0006661;phosphatidylinositol biosynthetic process;0.0219201246063439!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0220585440085947!GO:0043681;protein import into mitochondrion;0.0223027785244752!GO:0051287;NAD binding;0.0225117725605648!GO:0048667;neuron morphogenesis during differentiation;0.0231269555789531!GO:0048812;neurite morphogenesis;0.0231269555789531!GO:0043407;negative regulation of MAP kinase activity;0.0231491470384443!GO:0004683;calmodulin-dependent protein kinase activity;0.0231627815973868!GO:0008088;axon cargo transport;0.0234037001031121!GO:0043025;cell soma;0.0234037001031121!GO:0030119;AP-type membrane coat adaptor complex;0.0234465736719294!GO:0051348;negative regulation of transferase activity;0.0234753736572121!GO:0019783;small conjugating protein-specific protease activity;0.0240176781802022!GO:0016079;synaptic vesicle exocytosis;0.0242864600056831!GO:0008286;insulin receptor signaling pathway;0.0244533689928126!GO:0005868;cytoplasmic dynein complex;0.0245122146191829!GO:0046839;phospholipid dephosphorylation;0.0245168374792142!GO:0006672;ceramide metabolic process;0.0248490927033545!GO:0019894;kinesin binding;0.0248490927033545!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0263260558905568!GO:0000209;protein polyubiquitination;0.0263260558905568!GO:0031301;integral to organelle membrane;0.0263905913793122!GO:0005100;Rho GTPase activator activity;0.0265736311393118!GO:0051539;4 iron, 4 sulfur cluster binding;0.0274222971371699!GO:0004298;threonine endopeptidase activity;0.0274222971371699!GO:0000059;protein import into nucleus, docking;0.0275449715774429!GO:0007005;mitochondrion organization and biogenesis;0.0275449715774429!GO:0000062;acyl-CoA binding;0.0277452037415499!GO:0031371;ubiquitin conjugating enzyme complex;0.0278627549836951!GO:0006916;anti-apoptosis;0.0278680299760254!GO:0046519;sphingoid metabolic process;0.0282985207674962!GO:0008090;retrograde axon cargo transport;0.0282985207674962!GO:0033596;TSC1-TSC2 complex;0.0282985207674962!GO:0033693;neurofilament bundle assembly;0.0282985207674962!GO:0030131;clathrin adaptor complex;0.0285570222450612!GO:0031175;neurite development;0.0287330741231803!GO:0016579;protein deubiquitination;0.0304024542238213!GO:0004843;ubiquitin-specific protease activity;0.0305515229265272!GO:0004672;protein kinase activity;0.0313990489744359!GO:0006595;polyamine metabolic process;0.0322835227381731!GO:0004428;inositol or phosphatidylinositol kinase activity;0.0324236998769485!GO:0005088;Ras guanyl-nucleotide exchange factor activity;0.0325918521994366!GO:0042995;cell projection;0.0328710433295087!GO:0008312;7S RNA binding;0.0329067725069615!GO:0006259;DNA metabolic process;0.0329656766451318!GO:0031110;regulation of microtubule polymerization or depolymerization;0.0346787734272338!GO:0051252;regulation of RNA metabolic process;0.0355435145905171!GO:0005762;mitochondrial large ribosomal subunit;0.0356645468065655!GO:0000315;organellar large ribosomal subunit;0.0356645468065655!GO:0019911;structural constituent of myelin sheath;0.0357699281746987!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0359830214782185!GO:0006611;protein export from nucleus;0.0362271710027521!GO:0005815;microtubule organizing center;0.0362271710027521!GO:0043069;negative regulation of programmed cell death;0.036924819394225!GO:0030663;COPI coated vesicle membrane;0.0372416558307485!GO:0030126;COPI vesicle coat;0.0372416558307485!GO:0004221;ubiquitin thiolesterase activity;0.0376181705181131!GO:0016363;nuclear matrix;0.0384645161650683!GO:0007158;neuron adhesion;0.0386445022732158!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0386445022732158!GO:0033043;regulation of organelle organization and biogenesis;0.0386445022732158!GO:0042552;myelination;0.0398049971081545!GO:0048168;regulation of neuronal synaptic plasticity;0.0401751072131429!GO:0042670;retinal cone cell differentiation;0.0402851941508799!GO:0051281;positive regulation of release of sequestered calcium ion into cytosol;0.0402851941508799!GO:0046549;retinal cone cell development;0.0402851941508799!GO:0004004;ATP-dependent RNA helicase activity;0.0403461596895641!GO:0043066;negative regulation of apoptosis;0.0412616310078096!GO:0033130;acetylcholine receptor binding;0.0413494075980933!GO:0008022;protein C-terminus binding;0.0413494075980933!GO:0008219;cell death;0.0417755062849823!GO:0016265;death;0.0417755062849823!GO:0043086;negative regulation of catalytic activity;0.0417879151482642!GO:0004576;oligosaccharyl transferase activity;0.0418245902831566!GO:0009892;negative regulation of metabolic process;0.0427106045993638!GO:0003711;transcription elongation regulator activity;0.0428976400395816!GO:0030911;TPR domain binding;0.0432268622983383!GO:0035023;regulation of Rho protein signal transduction;0.043268361626369!GO:0006366;transcription from RNA polymerase II promoter;0.0441130864216188!GO:0007612;learning;0.0442305001736071!GO:0051726;regulation of cell cycle;0.0447188325575045!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0450219856627377!GO:0006376;mRNA splice site selection;0.0458871716378504!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0458871716378504!GO:0000096;sulfur amino acid metabolic process;0.0465243444295493!GO:0009066;aspartate family amino acid metabolic process;0.046820747726003!GO:0007006;mitochondrial membrane organization and biogenesis;0.0468293794166908!GO:0032318;regulation of Ras GTPase activity;0.0481483948312809!GO:0007041;lysosomal transport;0.0489292759417608!GO:0016859;cis-trans isomerase activity;0.0492425497271848 | |||
|sample_id=10035 | |sample_id=10035 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=paracentral gyrus | |sample_tissue=paracentral gyrus | ||
|top_motifs=REST:4.48037292993;NHLH1,2:4.35552390011;EGR1..3:4.03762219603;ZFP161:3.85897498525;MYFfamily:3.72238252281;AHR_ARNT_ARNT2:3.60719633381;PRRX1,2:3.60231787347;MTE{core}:3.5070044674;ZBTB6:3.4995813093;MED-1{core}:3.49134957469;ATF2:3.41983028033;PAX5:3.33484066133;TFAP2B:3.28787208692;MTF1:3.20330069301;CUX2:3.18364444165;HIC1:3.03591493276;RREB1:2.90746966245;GTF2I:2.85528914277;RFX1:2.75578582496;BREu{core}:2.65442367865;LMO2:2.56514376832;SMAD1..7,9:2.56418654141;SOX2:2.55092294348;MZF1:2.55079802826;JUN:2.51140241107;PRDM1:2.44687624959;HOXA9_MEIS1:2.43163946894;DBP:2.39447073472;SOX5:2.35133070961;TGIF1:2.29426787505;POU6F1:2.28468826749;FOXM1:2.26430255276;SOX{8,9,10}:2.26096432262;NKX3-2:2.25897404107;PATZ1:2.25523746602;MAZ:2.24187310731;NKX2-3_NKX2-5:2.23576673218;GFI1B:2.19320263097;NANOG:2.1228590874;GCM1,2:2.10710847865;OCT4_SOX2{dimer}:2.05240937991;POU5F1:2.02190191928;TFDP1:2.00729649415;SOX17:1.96202527963;MAFB:1.91550101544;EBF1:1.87456271911;NFIX:1.8639572283;LEF1_TCF7_TCF7L1,2:1.85054805811;PAX6:1.84699055602;NRF1:1.75029870078;ESRRA:1.7411672523;RFX2..5_RFXANK_RFXAP:1.6056364993;HOX{A4,D4}:1.50778812105;KLF4:1.48635214393;CDC5L:1.46704151963;ARID5B:1.45943669212;GATA4:1.45469587577;XBP1:1.41509725939;NFIL3:1.4019355824;MYOD1:1.40057260006;FOXQ1:1.38362397137;RORA:1.36870974545;FOX{F1,F2,J1}:1.33037542299;GTF2A1,2:1.30187540655;ZNF238:1.27351640508;EP300:1.25782028889;POU3F1..4:1.25519296037;HMGA1,2:1.25020520474;SP1:1.24037631885;RBPJ:1.18195628762;SREBF1,2:1.12532512431;ZNF423:1.08762950407;SPZ1:1.0040579683;CREB1:0.984092552225;TFAP2{A,C}:0.977340348882;STAT1,3:0.898881581607;ZNF143:0.880785599935;MEF2{A,B,C,D}:0.878601899255;CRX:0.876694525805;ZEB1:0.86707710462;HBP1_HMGB_SSRP1_UBTF:0.834804473031;HMX1:0.831124940012;HAND1,2:0.822880119;ADNP_IRX_SIX_ZHX:0.753365529468;ALX1:0.712062776382;YY1:0.681471168665;FOXP3:0.654105279307;FOXN1:0.596496704022;TLX1..3_NFIC{dimer}:0.58748465931;ZNF384:0.566340434392;ONECUT1,2:0.531443579358;ZIC1..3:0.489075646068;GFI1:0.478810311582;GZF1:0.468273356229;FOX{D1,D2}:0.466579543332;ATF5_CREB3:0.459529618803;FOXP1:0.425882149629;TBX4,5:0.413727534241;ATF4:0.408021453971;XCPE1{core}:0.376435832484;TLX2:0.369277489796;bHLH_family:0.354593080715;BPTF:0.304923626262;PBX1:0.294299161477;AR:0.277217387153;POU1F1:0.266476596136;PAX3,7:0.240736566919;PAX2:0.239208449384;NKX6-1,2:0.230994388927;NR3C1:0.19987295643;T:0.177626758674;MYBL2:0.174167974884;IKZF1:0.153733551546;NFY{A,B,C}:0.069584797894;NFE2L2:0.0563037727802;FOX{I1,J2}:-0.0280116288197;VSX1,2:-0.0525016635179;FOXA2:-0.073196669635;IRF7:-0.0969876812564;IKZF2:-0.12087372508;PDX1:-0.123584788956;NFATC1..3:-0.142369201498;NANOG{mouse}:-0.155129853662;FOXL1:-0.191102205911;PAX4:-0.208108848079;SNAI1..3:-0.211112109532;ZNF148:-0.247502468174;LHX3,4:-0.260935632531;NR5A1,2:-0.269198726215;PAX1,9:-0.274758545949;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.283835218653;NR1H4:-0.299140170996;TEF:-0.337852265801;TFAP4:-0.357302799661;GATA6:-0.363924978056;NFE2:-0.367229261338;HOX{A6,A7,B6,B7}:-0.37899965577;NFE2L1:-0.387415099671;STAT2,4,6:-0.448857375656;SPI1:-0.491765819416;UFEwm:-0.494920796295;PAX8:-0.524245269176;HSF1,2:-0.528061681225;IRF1,2:-0.546597848174;FOXD3:-0.572553916355;HNF1A:-0.589277051948;TFCP2:-0.594099253578;TOPORS:-0.603410684668;ESR1:-0.60364180924;CEBPA,B_DDIT3:-0.604417730685;DMAP1_NCOR{1,2}_SMARC:-0.613261920486;TAL1_TCF{3,4,12}:-0.619614108815;FOXO1,3,4:-0.663489216618;ATF6:-0.668903841928;ETS1,2:-0.717091001593;FOSL2:-0.731199386777;SPIB:-0.788109609104;TP53:-0.871758151798;FOS_FOS{B,L1}_JUN{B,D}:-0.909999298672;ELK1,4_GABP{A,B1}:-0.919413705296;BACH2:-0.939692084438;GLI1..3:-0.984670096915;HNF4A_NR2F1,2:-1.02491039201;TEAD1:-1.06282735309;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.09222137232;TBP:-1.14268963593;HLF:-1.18396955507;RUNX1..3:-1.18899221871;NFKB1_REL_RELA:-1.20070024154;PPARG:-1.2183030473;HIF1A:-1.22829514793;RXR{A,B,G}:-1.23559161879;E2F1..5:-1.23887965144;SRF:-1.26481195087;MYB:-1.35529268828;RXRA_VDR{dimer}:-1.40223842519;NKX2-2,8:-1.44206613728;POU2F1..3:-1.53519551888;ZBTB16:-1.53924355055;NKX3-1:-1.54855582463;STAT5{A,B}:-1.57197494954;ELF1,2,4:-1.57473029995;EVI1:-1.58380991934;HES1:-1.59550835561;EN1,2:-1.63742936716;ALX4:-1.64421548313;NKX2-1,4:-1.75991045457;CDX1,2,4:-1.818453423;PITX1..3:-1.8779746085;HOX{A5,B5}:-2.13409455375;AIRE:-2.23132356931;NR6A1:-3.16660871672 | |top_motifs=REST:4.48037292993;NHLH1,2:4.35552390011;EGR1..3:4.03762219603;ZFP161:3.85897498525;MYFfamily:3.72238252281;AHR_ARNT_ARNT2:3.60719633381;PRRX1,2:3.60231787347;MTE{core}:3.5070044674;ZBTB6:3.4995813093;MED-1{core}:3.49134957469;ATF2:3.41983028033;PAX5:3.33484066133;TFAP2B:3.28787208692;MTF1:3.20330069301;CUX2:3.18364444165;HIC1:3.03591493276;RREB1:2.90746966245;GTF2I:2.85528914277;RFX1:2.75578582496;BREu{core}:2.65442367865;LMO2:2.56514376832;SMAD1..7,9:2.56418654141;SOX2:2.55092294348;MZF1:2.55079802826;JUN:2.51140241107;PRDM1:2.44687624959;HOXA9_MEIS1:2.43163946894;DBP:2.39447073472;SOX5:2.35133070961;TGIF1:2.29426787505;POU6F1:2.28468826749;FOXM1:2.26430255276;SOX{8,9,10}:2.26096432262;NKX3-2:2.25897404107;PATZ1:2.25523746602;MAZ:2.24187310731;NKX2-3_NKX2-5:2.23576673218;GFI1B:2.19320263097;NANOG:2.1228590874;GCM1,2:2.10710847865;OCT4_SOX2{dimer}:2.05240937991;POU5F1:2.02190191928;TFDP1:2.00729649415;SOX17:1.96202527963;MAFB:1.91550101544;EBF1:1.87456271911;NFIX:1.8639572283;LEF1_TCF7_TCF7L1,2:1.85054805811;PAX6:1.84699055602;NRF1:1.75029870078;ESRRA:1.7411672523;RFX2..5_RFXANK_RFXAP:1.6056364993;HOX{A4,D4}:1.50778812105;KLF4:1.48635214393;CDC5L:1.46704151963;ARID5B:1.45943669212;GATA4:1.45469587577;XBP1:1.41509725939;NFIL3:1.4019355824;MYOD1:1.40057260006;FOXQ1:1.38362397137;RORA:1.36870974545;FOX{F1,F2,J1}:1.33037542299;GTF2A1,2:1.30187540655;ZNF238:1.27351640508;EP300:1.25782028889;POU3F1..4:1.25519296037;HMGA1,2:1.25020520474;SP1:1.24037631885;RBPJ:1.18195628762;SREBF1,2:1.12532512431;ZNF423:1.08762950407;SPZ1:1.0040579683;CREB1:0.984092552225;TFAP2{A,C}:0.977340348882;STAT1,3:0.898881581607;ZNF143:0.880785599935;MEF2{A,B,C,D}:0.878601899255;CRX:0.876694525805;ZEB1:0.86707710462;HBP1_HMGB_SSRP1_UBTF:0.834804473031;HMX1:0.831124940012;HAND1,2:0.822880119;ADNP_IRX_SIX_ZHX:0.753365529468;ALX1:0.712062776382;YY1:0.681471168665;FOXP3:0.654105279307;FOXN1:0.596496704022;TLX1..3_NFIC{dimer}:0.58748465931;ZNF384:0.566340434392;ONECUT1,2:0.531443579358;ZIC1..3:0.489075646068;GFI1:0.478810311582;GZF1:0.468273356229;FOX{D1,D2}:0.466579543332;ATF5_CREB3:0.459529618803;FOXP1:0.425882149629;TBX4,5:0.413727534241;ATF4:0.408021453971;XCPE1{core}:0.376435832484;TLX2:0.369277489796;bHLH_family:0.354593080715;BPTF:0.304923626262;PBX1:0.294299161477;AR:0.277217387153;POU1F1:0.266476596136;PAX3,7:0.240736566919;PAX2:0.239208449384;NKX6-1,2:0.230994388927;NR3C1:0.19987295643;T:0.177626758674;MYBL2:0.174167974884;IKZF1:0.153733551546;NFY{A,B,C}:0.069584797894;NFE2L2:0.0563037727802;FOX{I1,J2}:-0.0280116288197;VSX1,2:-0.0525016635179;FOXA2:-0.073196669635;IRF7:-0.0969876812564;IKZF2:-0.12087372508;PDX1:-0.123584788956;NFATC1..3:-0.142369201498;NANOG{mouse}:-0.155129853662;FOXL1:-0.191102205911;PAX4:-0.208108848079;SNAI1..3:-0.211112109532;ZNF148:-0.247502468174;LHX3,4:-0.260935632531;NR5A1,2:-0.269198726215;PAX1,9:-0.274758545949;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.283835218653;NR1H4:-0.299140170996;TEF:-0.337852265801;TFAP4:-0.357302799661;GATA6:-0.363924978056;NFE2:-0.367229261338;HOX{A6,A7,B6,B7}:-0.37899965577;NFE2L1:-0.387415099671;STAT2,4,6:-0.448857375656;SPI1:-0.491765819416;UFEwm:-0.494920796295;PAX8:-0.524245269176;HSF1,2:-0.528061681225;IRF1,2:-0.546597848174;FOXD3:-0.572553916355;HNF1A:-0.589277051948;TFCP2:-0.594099253578;TOPORS:-0.603410684668;ESR1:-0.60364180924;CEBPA,B_DDIT3:-0.604417730685;DMAP1_NCOR{1,2}_SMARC:-0.613261920486;TAL1_TCF{3,4,12}:-0.619614108815;FOXO1,3,4:-0.663489216618;ATF6:-0.668903841928;ETS1,2:-0.717091001593;FOSL2:-0.731199386777;SPIB:-0.788109609104;TP53:-0.871758151798;FOS_FOS{B,L1}_JUN{B,D}:-0.909999298672;ELK1,4_GABP{A,B1}:-0.919413705296;BACH2:-0.939692084438;GLI1..3:-0.984670096915;HNF4A_NR2F1,2:-1.02491039201;TEAD1:-1.06282735309;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.09222137232;TBP:-1.14268963593;HLF:-1.18396955507;RUNX1..3:-1.18899221871;NFKB1_REL_RELA:-1.20070024154;PPARG:-1.2183030473;HIF1A:-1.22829514793;RXR{A,B,G}:-1.23559161879;E2F1..5:-1.23887965144;SRF:-1.26481195087;MYB:-1.35529268828;RXRA_VDR{dimer}:-1.40223842519;NKX2-2,8:-1.44206613728;POU2F1..3:-1.53519551888;ZBTB16:-1.53924355055;NKX3-1:-1.54855582463;STAT5{A,B}:-1.57197494954;ELF1,2,4:-1.57473029995;EVI1:-1.58380991934;HES1:-1.59550835561;EN1,2:-1.63742936716;ALX4:-1.64421548313;NKX2-1,4:-1.75991045457;CDX1,2,4:-1.818453423;PITX1..3:-1.8779746085;HOX{A5,B5}:-2.13409455375;AIRE:-2.23132356931;NR6A1:-3.16660871672 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10035-101E8;search_select_hide=table117:FF:10035-101E8 | |||
}} | }} | ||
Latest revision as of 12:16, 3 June 2020
| Name: | paracentral gyrus, adult, pool1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10642 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10642
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10642
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.033 |
| 10 | 10 | 0.0256 |
| 100 | 100 | 0.261 |
| 101 | 101 | 0.896 |
| 102 | 102 | 0.792 |
| 103 | 103 | 0.23 |
| 104 | 104 | 0.147 |
| 105 | 105 | 0.299 |
| 106 | 106 | 0.058 |
| 107 | 107 | 0.129 |
| 108 | 108 | 0.829 |
| 109 | 109 | 0.01 |
| 11 | 11 | 0.0149 |
| 110 | 110 | 0.0367 |
| 111 | 111 | 0.0667 |
| 112 | 112 | 0.335 |
| 113 | 113 | 0.662 |
| 114 | 114 | 0.0895 |
| 115 | 115 | 0.951 |
| 116 | 116 | 0.165 |
| 117 | 117 | 0.00907 |
| 118 | 118 | 0.0982 |
| 119 | 119 | 0.108 |
| 12 | 12 | 0.753 |
| 120 | 120 | 0.136 |
| 121 | 121 | 0.674 |
| 122 | 122 | 0.537 |
| 123 | 123 | 0.57 |
| 124 | 124 | 0.0275 |
| 125 | 125 | 0.164 |
| 126 | 126 | 0.029 |
| 127 | 127 | 0.493 |
| 128 | 128 | 0.171 |
| 129 | 129 | 0.538 |
| 13 | 13 | 0.00119 |
| 130 | 130 | 0.519 |
| 131 | 131 | 0.0669 |
| 132 | 132 | 0.775 |
| 133 | 133 | 0.0015 |
| 134 | 134 | 0.262 |
| 135 | 135 | 0.162 |
| 136 | 136 | 0.0145 |
| 137 | 137 | 0.763 |
| 138 | 138 | 0.833 |
| 139 | 139 | 0.0991 |
| 14 | 14 | 0.884 |
| 140 | 140 | 0.114 |
| 141 | 141 | 0.26 |
| 142 | 142 | 0.854 |
| 143 | 143 | 0.0142 |
| 144 | 144 | 0.88 |
| 145 | 145 | 0.0782 |
| 146 | 146 | 0.624 |
| 147 | 147 | 0.973 |
| 148 | 148 | 0.127 |
| 149 | 149 | 0.279 |
| 15 | 15 | 0.0707 |
| 150 | 150 | 0.181 |
| 151 | 151 | 0.649 |
| 152 | 152 | 0.149 |
| 153 | 153 | 0.737 |
| 154 | 154 | 0.616 |
| 155 | 155 | 0.379 |
| 156 | 156 | 0.389 |
| 157 | 157 | 0.401 |
| 158 | 158 | 0.719 |
| 159 | 159 | 0.0483 |
| 16 | 16 | 0.0707 |
| 160 | 160 | 0.184 |
| 161 | 161 | 0.169 |
| 162 | 162 | 0.976 |
| 163 | 163 | 0.83 |
| 164 | 164 | 0.0168 |
| 165 | 165 | 0.0443 |
| 166 | 166 | 0.863 |
| 167 | 167 | 0.335 |
| 168 | 168 | 0.72 |
| 169 | 169 | 0.00757 |
| 17 | 17 | 0.154 |
| 18 | 18 | 0.192 |
| 19 | 19 | 0.204 |
| 2 | 2 | 0.997 |
| 20 | 20 | 0.0904 |
| 21 | 21 | 0.077 |
| 22 | 22 | 0.25 |
| 23 | 23 | 0.452 |
| 24 | 24 | 0.108 |
| 25 | 25 | 0.486 |
| 26 | 26 | 6.70521e-5 |
| 27 | 27 | 0.976 |
| 28 | 28 | 0.703 |
| 29 | 29 | 0.0113 |
| 3 | 3 | 0.0263 |
| 30 | 30 | 0.591 |
| 31 | 31 | 0.89 |
| 32 | 32 | 0.0271 |
| 33 | 33 | 0.0685 |
| 34 | 34 | 0.774 |
| 35 | 35 | 0.476 |
| 36 | 36 | 0.086 |
| 37 | 37 | 0.0451 |
| 38 | 38 | 0.309 |
| 39 | 39 | 0.241 |
| 4 | 4 | 0.922 |
| 40 | 40 | 0.0511 |
| 41 | 41 | 0.425 |
| 42 | 42 | 0.176 |
| 43 | 43 | 0.106 |
| 44 | 44 | 0.0892 |
| 45 | 45 | 0.812 |
| 46 | 46 | 0.0497 |
| 47 | 47 | 0.0621 |
| 48 | 48 | 0.0526 |
| 49 | 49 | 0.131 |
| 5 | 5 | 0.486 |
| 50 | 50 | 0.356 |
| 51 | 51 | 0.526 |
| 52 | 52 | 0.64 |
| 53 | 53 | 0.967 |
| 54 | 54 | 0.484 |
| 55 | 55 | 0.359 |
| 56 | 56 | 0.484 |
| 57 | 57 | 0.243 |
| 58 | 58 | 0.309 |
| 59 | 59 | 0.137 |
| 6 | 6 | 0.561 |
| 60 | 60 | 0.0805 |
| 61 | 61 | 0.0729 |
| 62 | 62 | 0.17 |
| 63 | 63 | 0.158 |
| 64 | 64 | 0.213 |
| 65 | 65 | 0.278 |
| 66 | 66 | 0.303 |
| 67 | 67 | 0.355 |
| 68 | 68 | 0.335 |
| 69 | 69 | 0.404 |
| 7 | 7 | 0.0568 |
| 70 | 70 | 0.0186 |
| 71 | 71 | 0.0086 |
| 72 | 72 | 0.507 |
| 73 | 73 | 0.0486 |
| 74 | 74 | 0.638 |
| 75 | 75 | 0.0292 |
| 76 | 76 | 0.383 |
| 77 | 77 | 0.215 |
| 78 | 78 | 0.00308 |
| 79 | 79 | 0.168 |
| 8 | 8 | 0.0509 |
| 80 | 80 | 0.993 |
| 81 | 81 | 0.544 |
| 82 | 82 | 0.453 |
| 83 | 83 | 0.173 |
| 84 | 84 | 0.661 |
| 85 | 85 | 0.259 |
| 86 | 86 | 0.213 |
| 87 | 87 | 0.00841 |
| 88 | 88 | 0.868 |
| 89 | 89 | 0.535 |
| 9 | 9 | 0.521 |
| 90 | 90 | 0.0355 |
| 91 | 91 | 0.429 |
| 92 | 92 | 0.487 |
| 93 | 93 | 0.601 |
| 94 | 94 | 0.0513 |
| 95 | 95 | 0.0333 |
| 96 | 96 | 0.844 |
| 97 | 97 | 0.759 |
| 98 | 98 | 0.206 |
| 99 | 99 | 0.812 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10642
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0000200 (gyrus)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0007190 (paracentral gyrus)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010035 (human paracentral gyrus - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)
