FF:11427-118G5: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| (26 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00004672 | ||
| | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004672 | ||
|accession_numbers=CAGE;DRX008406;DRR009278;DRZ000703;DRZ002088;DRZ012053;DRZ013438 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037114;DRR041480;DRZ007122 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001987,UBERON:0005156,UBERON:0004119,UBERON:0000062,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000478,UBERON:0010317,UBERON:0003100,UBERON:0000474 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000349,CL:0000255,CL:0002577 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000136 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Placental%2520Epithelial%2520Cells%252c%2520donor3.CNhs12037.11427-118G5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Placental%2520Epithelial%2520Cells%252c%2520donor3.CNhs12037.11427-118G5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Placental%2520Epithelial%2520Cells%252c%2520donor3.CNhs12037.11427-118G5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Placental%2520Epithelial%2520Cells%252c%2520donor3.CNhs12037.11427-118G5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Placental%2520Epithelial%2520Cells%252c%2520donor3.CNhs12037.11427-118G5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11427-118G5 | |id=FF:11427-118G5 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000136 | ||
|is_obsolete= | |||
|library_id=CNhs12037 | |||
|library_id_phase_based=2:CNhs12037 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11427 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10008.ACTTGA.11427 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11427 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10008.ACTTGA.11427 | |||
|name=Placental Epithelial Cells, donor3 | |name=Placental Epithelial Cells, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 64: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12037,LSID837,release011,COMPLETED | |profile_hcage=CNhs12037,LSID837,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10008,,, | |profile_srnaseq=SRhi10008,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,0.0954659177154296,0.0356544152351227,0,0,0,0,0,0,0,0,0,0,0,0,0,0.694730922480603,0,0,0,0,0,0.395741571144544,0,0,0.14743301722181,0,0,0,0,0,0,0,0,0,0,0,0,0.361245434649486,0,0,0,0,0,0,0,0,0.078492809869121,0,0,0,0,0,0.0595869438753306,0.114741150775265,0.108423300721306,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0.34430602982544,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123437166344936,0.0741623465011475,0,0.114741150775265,0,0,0.0167057995375588,0.033675814111825,0,0,0,0.114741150775265,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0.205415661963911,0,0,0.193290389573464,0.428985565410132,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,0.0167057995375588,0,0,0,0,0,0,0,0,0.114741150775265,0,0,-0.132437724510299,0,-0.474086218752008,0.136874464477201,0,0,-0.369908511521938,0,0,0,0,0,0,0,0,0,-0.0133787161772995,0,-0.0504125515893149,0,0,0,0,0.0466108986943314,-0.305472230898407,0,-0.00210504623678956,-0.0683442610773682,0,0,0,0,0.129770574819047,0,-0.120879483793741,0.0320209824518479,-0.057855330902243,0.244282699465138,-0.04680465889238,0,0,0,-0.26104547948577,-0.0562683408645497,0,0,-0.121779851751874,-0.181349618560659,0,0,0.102654885860966,0,0.0461668966605182,0.216116609191082,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0452143641605188,0.0173174331464715,0,0,0.114741150775265,0,0.358451145323454,0,0,0.23136133993772,0.179744858426331,0.00698791586620875,-0.135981897955213,0.00112560061026664,-0.187648576234648,0.166823152221294,0.159544728560152,0.137877083314267,0.301974985540054,0.343932921907423,0.114741150775265,-0.135967756396374,0.378305144853779,0,0.189592213433752,0.144983405683983,0.267472728010555,0.420339673554183,0,0.114741150775265,0,0.488529901356854,0,-0.0163396778163472,0.338893996479359,-0.00693134098373525,0.59951450964758,0.0951950372587155,0.284759215640553,0.272945249825976,-0.0395325284566706,-0.057425208743223,0.022052351577966,-0.136212575706683,0,0,0.0249140882384864,0.0428505485031099,0.254645918464858,-0.166449338267487,0.0721741762033004,0.234811788121631,0.137071400886543,0.0573705753876325,0.112053998501249,0.216401728172733,0,0,-0.00805773247737906,0,0,0,0,0,0.271976696120551,-0.334076481066256,-0.232855561555545,0,0.0409051755636249,0,0.183769205911582,0,0.0728969160137931,0.0594057645065166,0,0.156743030314956,0,0.0971361341761965,0.112427966404815,-0.0459976937629143,0.148324693002295,-0.0584468268118252,-0.450082326775059,0.192258262735656,0.0993411527615062,-0.0701506148576148,0.104051047431272,-0.0881268324752877,0,-0.483533506365008,-0.230121296710332,0.0389565547896215,0.130689954179993,0.15473963735732,-0.0930007816302121,0,-0.0580897842139276,0,0.109898138357628,0.307620181355791,-0.158899767580014,-0.437037673535039,0,0.183838794573702,-0.507741330773302,0.114741150775265,0.00776273323186694,-0.0212463252102046,0,0.0550485786292715,0.090517316179004,-0.154279852476956,0.0905341336211581,0,0.172030414138682,0,0,-0.149375095056516,-0.120734886989124,0,0.0209528208527918,-0.0752882727561255,-0.204204797041923,-0.00122992265966888,0.205415661963911,0,0.163389497360204,0,0.604647495894287,0.310913525593889,0.028925096976395,0.264024920675799,-0.0479106795228449,-0.0135770753197012,0.49667967024107,0,0,0.222483478188196,0,0.0661584830100725,0,0,0.137163240607813,0,0,0,0.114741150775265,0,0,0,0,0,0.101609097055311,0,0,-0.391345376874373,-0.240092179441183,0,0.0357255928176794,0,0,0,0,0,0,0,0,0.095890179846438,0,0.276993828476951,0.200005622076686,0,0,0,-0.100982251778209,-0.0884954113194586,0.114741150775265,-0.131862706497632,0,0,0,0,-0.0861409897892114,0,0,0,0,0.476184184403607,0.359127390847984,0,0.114741150775265,0,0.06735162822365,0,0,0,0,-0.157164025259517,0,0,-0.0369948952919903,0,0.160924286737113,0.0331592712284237,0,-0.0892371171572091,-0.115520459964186,0.356509446804151,0,0,-0.146605981014622,0,0,-0.586567486722055,0,0,0,0,0,0,0,0,0,-0.214314512399756,0,0,0.0535095455698232,0,0,0,0,0,0,0,0,-0.102397345708925,-0.0922240566585104,0,0,0,0,0,0,0,-0.0241060230789031,-0.100641804151113,0,0,0,0,0,0.34430602982544,0,0,-0.19103633266257,0,0,0,0,0,0.108423300721306,0,0,0,0,0.0713088304702453,0,0,0.0669438976319264,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,0.0954659177154296,0,0,0,0,0,0,0,0.418108205331497,0,0,0,0,0.0915312882549336,0,0,0,-0.104796384789156,0,-0.160318030086386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0573705753876325,0,0,0,0.146016741143381,0,0.101918821657365,-0.0111931236013375,0,0,0.217691104609949,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205415661963911,0,0,0,0,0,0,-0.0962259712900034,0,0,0,0,0,0,0,0.395741571144544,0,0,0.0680455965690619,0,0,0,0,0.102553277866954,0,-0.11582382574399,0.711700775919063,-0.0313420920586433,0,0,0,0.00298500290517758,0,0,0.144256099903925,0.114741150775265,0.213612219581771,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.114741150775265,0,0,0,0,0,0,0,0,0,0.694730922480603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.114741150775265,0,0,0,0,0,0,0,0,0,-0.0340113632754165,0,0,0.114741150775265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,-0.213086229657044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.287512636587193,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232167531761618,0,0.121039029733884,0,0,0,0,0,0.280389607000673,0,0,0,0,0,0,0,0,0,0,-0.10112720760452,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0,0.050996558469266,0,0,0.400011244153372,0,0,0,0,0,0,0,0,0,0,-0.0481949463245942,0,0,0.573263160205287,0,0,0,0,0,0,0,0,0,0,0,0,-0.0613201791501264,0,0,0,0,0,0,0,0,0,0,0.156985619738242,0,0,0,0,0,0,0,0,1.24628842727691,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0573173884606405,0.205415661963911,0.428985565410132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0573705753876325,0.0573705753876325,0,0,0,0,0,0,0,0,0,0,0,0,-0.182571061194678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0296969223726757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.171019583838412,0,0,0,0,0,0,0,0,0.114741150775265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.192747187844922,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0998658388988745,0,0,0,0,0,0,0,0.157693610003672,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0237397835175619,0,0,0,0,0,0,0,0,0,0,0,0.0573705753876325,0,0,0,0,0,-0.0317165860483832,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0573705753876325,0,0,0,0.0349991521102871,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14743301722181,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0573705753876325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0573705753876325,0,0,0,-0.0499379825215864,0,0,0,0,0,0,0,0,0,0,-0.0412500915278073,0.0573705753876325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11649894974087,0,0,-0.0422874684771159,0,0.201245096789452,0.130082717350423,0,0,0,0,0,0.138058085887603,0,0,0,0,0,0,0,0.246849733706301,0,0,-0.0400762477245316,0,0,-0.137338502423895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.280072095322966,0,0,0.0966247788905862,0,0.0180852735693183,0.448087692281013,0,0,0.0109139714061033,0,0,-0.174992895090299,-0.0875572184711085,0,0,0,0,0.114741150775265,0,0,0,0,0,0,0,0,0,0,0,0.114741150775265,0,0.148556715801312,-0.269475635594569,0.114741150775265,-0.0984466473497514,0,0,-0.303850998426433,0,0,0,0.0187817434016783 | |||
|rna_box=118 | |rna_box=118 | ||
|rna_catalog_number=CA230-R10f | |rna_catalog_number=CA230-R10f | ||
| Line 56: | Line 81: | ||
|rna_tube_id=118G5 | |rna_tube_id=118G5 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10008.ACTTGA | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 96: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.32752610250962e-225!GO:0005737;cytoplasm;6.70297797908239e-180!GO:0043226;organelle;1.44762507493866e-179!GO:0043229;intracellular organelle;4.4469068377117e-179!GO:0043231;intracellular membrane-bound organelle;7.38972005782883e-173!GO:0043227;membrane-bound organelle;2.32917232307291e-172!GO:0044422;organelle part;1.80127493844817e-135!GO:0044446;intracellular organelle part;2.69821842719866e-134!GO:0044444;cytoplasmic part;2.89286894454918e-124!GO:0032991;macromolecular complex;1.44507612619818e-84!GO:0044238;primary metabolic process;8.33321351044192e-81!GO:0044237;cellular metabolic process;9.76834171749735e-80!GO:0005515;protein binding;2.24441037947113e-78!GO:0030529;ribonucleoprotein complex;1.84429941727313e-76!GO:0043170;macromolecule metabolic process;1.52728865202405e-72!GO:0005634;nucleus;6.07635102064903e-67!GO:0043233;organelle lumen;1.61562724873329e-62!GO:0031974;membrane-enclosed lumen;1.61562724873329e-62!GO:0005739;mitochondrion;8.16153281986577e-61!GO:0044428;nuclear part;7.29330431722524e-60!GO:0003723;RNA binding;6.2016258318523e-54!GO:0005840;ribosome;7.10718588923018e-50!GO:0006412;translation;1.89417754649152e-45!GO:0016043;cellular component organization and biogenesis;3.44928049477446e-45!GO:0019538;protein metabolic process;4.86490060175911e-45!GO:0031090;organelle membrane;1.35521640374514e-44!GO:0003735;structural constituent of ribosome;3.56004425917958e-44!GO:0043234;protein complex;4.8787742701188e-42!GO:0043283;biopolymer metabolic process;3.69943728919118e-41!GO:0044260;cellular macromolecule metabolic process;2.121622490446e-39!GO:0044429;mitochondrial part;2.29599401609162e-39!GO:0009058;biosynthetic process;4.52459273677872e-39!GO:0033279;ribosomal subunit;7.2720571731904e-39!GO:0044267;cellular protein metabolic process;2.533199947803e-38!GO:0006396;RNA processing;1.08782560335691e-37!GO:0043228;non-membrane-bound organelle;1.1910305335573e-37!GO:0043232;intracellular non-membrane-bound organelle;1.1910305335573e-37!GO:0044249;cellular biosynthetic process;1.21691903758673e-36!GO:0031981;nuclear lumen;1.62508269117352e-36!GO:0009059;macromolecule biosynthetic process;9.8668541072297e-36!GO:0033036;macromolecule localization;2.62421808403174e-35!GO:0031967;organelle envelope;9.7474183553059e-35!GO:0005829;cytosol;9.99314181932525e-35!GO:0031975;envelope;2.27480676115069e-34!GO:0006996;organelle organization and biogenesis;3.6952814909611e-34!GO:0015031;protein transport;4.32646080603364e-34!GO:0010467;gene expression;1.43366775174023e-33!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.64878296727852e-33!GO:0008104;protein localization;6.68753321129463e-33!GO:0045184;establishment of protein localization;2.40745401824065e-32!GO:0065003;macromolecular complex assembly;2.7715105431056e-32!GO:0016071;mRNA metabolic process;2.91306175669725e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.00681863810457e-29!GO:0022607;cellular component assembly;1.56360105317029e-29!GO:0006259;DNA metabolic process;2.51469391339709e-29!GO:0008380;RNA splicing;8.1603401764732e-28!GO:0046907;intracellular transport;2.06276175457092e-26!GO:0006397;mRNA processing;7.81119793403255e-26!GO:0005740;mitochondrial envelope;1.13190164382521e-25!GO:0019866;organelle inner membrane;1.8037394752133e-24!GO:0007049;cell cycle;1.98354424428281e-24!GO:0031966;mitochondrial membrane;3.39286595347797e-24!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.84121528200967e-23!GO:0006886;intracellular protein transport;9.70271404285256e-23!GO:0005743;mitochondrial inner membrane;1.00972029938209e-22!GO:0005654;nucleoplasm;6.19219769899147e-22!GO:0044445;cytosolic part;7.43785939920148e-22!GO:0005681;spliceosome;6.74540425779772e-21!GO:0015934;large ribosomal subunit;2.76150404128836e-20!GO:0022402;cell cycle process;3.90116477724688e-20!GO:0006119;oxidative phosphorylation;7.41677860794654e-20!GO:0015935;small ribosomal subunit;1.05753226049874e-19!GO:0044455;mitochondrial membrane part;1.7158879255465e-18!GO:0005783;endoplasmic reticulum;2.62383249503951e-18!GO:0044451;nucleoplasm part;3.45581728316857e-18!GO:0000278;mitotic cell cycle;4.95993894634557e-18!GO:0012505;endomembrane system;9.47430615468137e-18!GO:0048770;pigment granule;2.56196397089056e-17!GO:0042470;melanosome;2.56196397089056e-17!GO:0003676;nucleic acid binding;3.44708525104504e-17!GO:0051649;establishment of cellular localization;4.59731260725138e-17!GO:0031980;mitochondrial lumen;6.45202119213266e-17!GO:0005759;mitochondrial matrix;6.45202119213266e-17!GO:0051641;cellular localization;6.94046832553964e-17!GO:0016874;ligase activity;9.49975136342285e-17!GO:0008134;transcription factor binding;2.89673789076082e-16!GO:0000166;nucleotide binding;5.40043970352198e-16!GO:0044432;endoplasmic reticulum part;6.35641230966906e-16!GO:0005746;mitochondrial respiratory chain;6.35641230966906e-16!GO:0016462;pyrophosphatase activity;8.48197360327877e-16!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;9.48768008844966e-16!GO:0016817;hydrolase activity, acting on acid anhydrides;1.09839837797136e-15!GO:0006457;protein folding;1.68624161968609e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.0068565962946e-15!GO:0051276;chromosome organization and biogenesis;4.05845170416428e-15!GO:0005730;nucleolus;7.13776585627813e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);7.53546931404536e-15!GO:0005694;chromosome;8.12702992898381e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.47107375102406e-14!GO:0017111;nucleoside-triphosphatase activity;1.61167176932299e-14!GO:0044427;chromosomal part;2.61106942842143e-14!GO:0051186;cofactor metabolic process;3.20350005035385e-14!GO:0022403;cell cycle phase;4.22238854335092e-14!GO:0022618;protein-RNA complex assembly;5.50737611580099e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.93019012728659e-14!GO:0050136;NADH dehydrogenase (quinone) activity;9.21706676831028e-14!GO:0003954;NADH dehydrogenase activity;9.21706676831028e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;9.21706676831028e-14!GO:0006325;establishment and/or maintenance of chromatin architecture;9.69968955799817e-14!GO:0043285;biopolymer catabolic process;1.37043570068264e-13!GO:0006974;response to DNA damage stimulus;1.37677756235551e-13!GO:0016070;RNA metabolic process;1.83417922352854e-13!GO:0005794;Golgi apparatus;2.10586107421871e-13!GO:0006323;DNA packaging;6.63423714560879e-13!GO:0043412;biopolymer modification;6.75843679847783e-13!GO:0006512;ubiquitin cycle;7.05663486583238e-13!GO:0007067;mitosis;7.68163807316613e-13!GO:0000087;M phase of mitotic cell cycle;1.02830363722805e-12!GO:0005761;mitochondrial ribosome;1.37349372179228e-12!GO:0000313;organellar ribosome;1.37349372179228e-12!GO:0000502;proteasome complex (sensu Eukaryota);1.62147759810136e-12!GO:0044265;cellular macromolecule catabolic process;2.11092393308346e-12!GO:0009057;macromolecule catabolic process;2.29850116450488e-12!GO:0006605;protein targeting;4.49341202432249e-12!GO:0042775;organelle ATP synthesis coupled electron transport;4.5487136712226e-12!GO:0042773;ATP synthesis coupled electron transport;4.5487136712226e-12!GO:0030964;NADH dehydrogenase complex (quinone);6.46887035362454e-12!GO:0045271;respiratory chain complex I;6.46887035362454e-12!GO:0005747;mitochondrial respiratory chain complex I;6.46887035362454e-12!GO:0000074;regulation of progression through cell cycle;9.90204207773183e-12!GO:0006464;protein modification process;1.15013513457015e-11!GO:0051726;regulation of cell cycle;1.1678765847867e-11!GO:0032553;ribonucleotide binding;1.30799764705044e-11!GO:0032555;purine ribonucleotide binding;1.30799764705044e-11!GO:0006281;DNA repair;1.75961313928719e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.04428181233756e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;3.97774287009709e-11!GO:0000375;RNA splicing, via transesterification reactions;3.97774287009709e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.97774287009709e-11!GO:0044248;cellular catabolic process;4.01825713544304e-11!GO:0006333;chromatin assembly or disassembly;4.79598238467338e-11!GO:0008135;translation factor activity, nucleic acid binding;5.12347920330638e-11!GO:0006732;coenzyme metabolic process;5.75845024011424e-11!GO:0030163;protein catabolic process;5.75845024011424e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;5.81109104373345e-11!GO:0017076;purine nucleotide binding;5.87221460904045e-11!GO:0005789;endoplasmic reticulum membrane;8.26606954853827e-11!GO:0051082;unfolded protein binding;1.09404374183271e-10!GO:0009719;response to endogenous stimulus;1.28611246464065e-10!GO:0006260;DNA replication;1.30549399798024e-10!GO:0000785;chromatin;1.32150870295305e-10!GO:0065004;protein-DNA complex assembly;1.51168520183112e-10!GO:0000279;M phase;1.67970904883149e-10!GO:0051603;proteolysis involved in cellular protein catabolic process;2.29804427951187e-10!GO:0005524;ATP binding;2.47177009940038e-10!GO:0006511;ubiquitin-dependent protein catabolic process;2.50989033556323e-10!GO:0019941;modification-dependent protein catabolic process;3.36625309130963e-10!GO:0043632;modification-dependent macromolecule catabolic process;3.36625309130963e-10!GO:0032559;adenyl ribonucleotide binding;4.45995049689082e-10!GO:0044257;cellular protein catabolic process;4.47055461854966e-10!GO:0012501;programmed cell death;4.67023504141866e-10!GO:0042254;ribosome biogenesis and assembly;5.68051136263434e-10!GO:0005635;nuclear envelope;5.83521191083567e-10!GO:0048193;Golgi vesicle transport;5.8971063150842e-10!GO:0006461;protein complex assembly;5.8971063150842e-10!GO:0006915;apoptosis;6.66174554733156e-10!GO:0051301;cell division;6.66174554733156e-10!GO:0006334;nucleosome assembly;7.58403998993078e-10!GO:0003712;transcription cofactor activity;8.48865564285683e-10!GO:0043687;post-translational protein modification;1.06286371383699e-09!GO:0009055;electron carrier activity;1.15953076789842e-09!GO:0031497;chromatin assembly;1.66920623045405e-09!GO:0030554;adenyl nucleotide binding;2.74101463522055e-09!GO:0031965;nuclear membrane;4.26086950535825e-09!GO:0006399;tRNA metabolic process;4.27391002578417e-09!GO:0005793;ER-Golgi intermediate compartment;4.44634616461078e-09!GO:0016604;nuclear body;6.2165681821179e-09!GO:0008219;cell death;7.25990767711245e-09!GO:0016265;death;7.25990767711245e-09!GO:0006446;regulation of translational initiation;7.94852056382449e-09!GO:0016192;vesicle-mediated transport;8.96898888402564e-09!GO:0008639;small protein conjugating enzyme activity;1.30298062266691e-08!GO:0006413;translational initiation;1.43584898287981e-08!GO:0009259;ribonucleotide metabolic process;1.75191472439107e-08!GO:0003743;translation initiation factor activity;1.78376096494652e-08!GO:0008565;protein transporter activity;2.59325255599382e-08!GO:0004842;ubiquitin-protein ligase activity;2.82490443875263e-08!GO:0006913;nucleocytoplasmic transport;3.15000506310325e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.54642231782868e-08!GO:0044453;nuclear membrane part;3.70655734700595e-08!GO:0030532;small nuclear ribonucleoprotein complex;4.17570210810353e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.30273392476196e-08!GO:0009150;purine ribonucleotide metabolic process;4.89430477806701e-08!GO:0019787;small conjugating protein ligase activity;5.15288624776809e-08!GO:0051169;nuclear transport;5.57767507507721e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;6.00507873765567e-08!GO:0004812;aminoacyl-tRNA ligase activity;6.00507873765567e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;6.00507873765567e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.24608226983011e-08!GO:0006163;purine nucleotide metabolic process;7.1023868816327e-08!GO:0009060;aerobic respiration;8.30950431929185e-08!GO:0042623;ATPase activity, coupled;9.10704132150046e-08!GO:0005768;endosome;1.31518787699098e-07!GO:0048475;coated membrane;1.41544700510048e-07!GO:0030117;membrane coat;1.41544700510048e-07!GO:0005788;endoplasmic reticulum lumen;1.47711589799757e-07!GO:0009260;ribonucleotide biosynthetic process;1.74607101217221e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.75832245089832e-07!GO:0043038;amino acid activation;1.79002933239381e-07!GO:0006418;tRNA aminoacylation for protein translation;1.79002933239381e-07!GO:0043039;tRNA aminoacylation;1.79002933239381e-07!GO:0009056;catabolic process;1.82911440897081e-07!GO:0050794;regulation of cellular process;2.1376592273557e-07!GO:0009152;purine ribonucleotide biosynthetic process;2.17093742350744e-07!GO:0016740;transferase activity;2.29389670734422e-07!GO:0009199;ribonucleoside triphosphate metabolic process;2.66068849687764e-07!GO:0009141;nucleoside triphosphate metabolic process;2.77032527077159e-07!GO:0030120;vesicle coat;2.88797401748517e-07!GO:0030662;coated vesicle membrane;2.88797401748517e-07!GO:0015986;ATP synthesis coupled proton transport;3.08592335858093e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.08592335858093e-07!GO:0016887;ATPase activity;3.20108020202433e-07!GO:0006164;purine nucleotide biosynthetic process;3.21797320596166e-07!GO:0051188;cofactor biosynthetic process;3.34769735313383e-07!GO:0016607;nuclear speck;3.78776807071719e-07!GO:0006366;transcription from RNA polymerase II promoter;4.1669735511817e-07!GO:0017038;protein import;4.17777285970037e-07!GO:0045333;cellular respiration;4.37076055536839e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.48332491541864e-07!GO:0009144;purine nucleoside triphosphate metabolic process;4.48332491541864e-07!GO:0007005;mitochondrion organization and biogenesis;4.86200216884085e-07!GO:0048523;negative regulation of cellular process;5.63005751792188e-07!GO:0016881;acid-amino acid ligase activity;5.72640502953754e-07!GO:0006364;rRNA processing;5.85913328066596e-07!GO:0009142;nucleoside triphosphate biosynthetic process;5.9663576311456e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.9663576311456e-07!GO:0016568;chromatin modification;9.17506200562632e-07!GO:0051329;interphase of mitotic cell cycle;1.01218115904681e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.05669692657203e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.05669692657203e-06!GO:0065002;intracellular protein transport across a membrane;1.14635553846263e-06!GO:0016072;rRNA metabolic process;1.29669769036435e-06!GO:0051325;interphase;1.61150936914648e-06!GO:0003697;single-stranded DNA binding;1.75195789691012e-06!GO:0009117;nucleotide metabolic process;2.04808936610371e-06!GO:0015630;microtubule cytoskeleton;2.30428635484138e-06!GO:0016023;cytoplasmic membrane-bound vesicle;2.32195721805807e-06!GO:0031252;leading edge;2.4460650599599e-06!GO:0005643;nuclear pore;2.75833780494202e-06!GO:0046034;ATP metabolic process;2.78591089149322e-06!GO:0043623;cellular protein complex assembly;3.06386698537605e-06!GO:0004386;helicase activity;3.5590778782324e-06!GO:0016564;transcription repressor activity;3.59909188455992e-06!GO:0016491;oxidoreductase activity;3.92602838891527e-06!GO:0031988;membrane-bound vesicle;4.20754456001394e-06!GO:0019829;cation-transporting ATPase activity;4.62326012839517e-06!GO:0015078;hydrogen ion transmembrane transporter activity;4.62563358512255e-06!GO:0006099;tricarboxylic acid cycle;5.10084385528769e-06!GO:0046356;acetyl-CoA catabolic process;5.10084385528769e-06!GO:0003924;GTPase activity;5.34691628710417e-06!GO:0003714;transcription corepressor activity;5.3904877868295e-06!GO:0006888;ER to Golgi vesicle-mediated transport;5.48476799067258e-06!GO:0008026;ATP-dependent helicase activity;5.49381693464245e-06!GO:0006754;ATP biosynthetic process;5.56657804925848e-06!GO:0006753;nucleoside phosphate metabolic process;5.56657804925848e-06!GO:0005667;transcription factor complex;6.9046566583746e-06!GO:0044431;Golgi apparatus part;7.64904392078409e-06!GO:0045259;proton-transporting ATP synthase complex;7.70502277061734e-06!GO:0016469;proton-transporting two-sector ATPase complex;8.47633819672904e-06!GO:0042981;regulation of apoptosis;1.04109768412399e-05!GO:0045786;negative regulation of progression through cell cycle;1.11065762687913e-05!GO:0031324;negative regulation of cellular metabolic process;1.13019692815976e-05!GO:0043067;regulation of programmed cell death;1.19641752482061e-05!GO:0006793;phosphorus metabolic process;1.26606272717931e-05!GO:0006796;phosphate metabolic process;1.26606272717931e-05!GO:0031982;vesicle;1.28236474142652e-05!GO:0006084;acetyl-CoA metabolic process;1.32079304326698e-05!GO:0048519;negative regulation of biological process;1.40908860360725e-05!GO:0032446;protein modification by small protein conjugation;1.43583057253568e-05!GO:0043566;structure-specific DNA binding;1.51565067238269e-05!GO:0031410;cytoplasmic vesicle;1.6206306633612e-05!GO:0006916;anti-apoptosis;1.75285886326422e-05!GO:0000786;nucleosome;1.75285886326422e-05!GO:0005773;vacuole;1.83003097590892e-05!GO:0051246;regulation of protein metabolic process;1.85037351321322e-05!GO:0005762;mitochondrial large ribosomal subunit;2.02063673486512e-05!GO:0000315;organellar large ribosomal subunit;2.02063673486512e-05!GO:0016567;protein ubiquitination;2.06074011053585e-05!GO:0008361;regulation of cell size;2.28265883712138e-05!GO:0016049;cell growth;2.34832871218119e-05!GO:0050657;nucleic acid transport;2.35896544215379e-05!GO:0051236;establishment of RNA localization;2.35896544215379e-05!GO:0050658;RNA transport;2.35896544215379e-05!GO:0006752;group transfer coenzyme metabolic process;2.50680942503047e-05!GO:0009109;coenzyme catabolic process;2.58110665864435e-05!GO:0046930;pore complex;2.6066108629211e-05!GO:0016853;isomerase activity;2.82485269427071e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.84982418021483e-05!GO:0005798;Golgi-associated vesicle;3.01252278843559e-05!GO:0044440;endosomal part;3.17922540626615e-05!GO:0010008;endosome membrane;3.17922540626615e-05!GO:0016310;phosphorylation;3.310340195811e-05!GO:0009108;coenzyme biosynthetic process;3.37318345589127e-05!GO:0006403;RNA localization;3.4463189906343e-05!GO:0019843;rRNA binding;3.87843220890885e-05!GO:0050789;regulation of biological process;4.00480899707267e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.14818394167401e-05!GO:0051187;cofactor catabolic process;4.31455243599287e-05!GO:0005819;spindle;4.5860197162602e-05!GO:0016563;transcription activator activity;4.63078470433676e-05!GO:0005839;proteasome core complex (sensu Eukaryota);4.73906035428932e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;4.86107105441535e-05!GO:0000245;spliceosome assembly;5.04934035353949e-05!GO:0043069;negative regulation of programmed cell death;5.17894765727852e-05!GO:0008654;phospholipid biosynthetic process;5.96424633913943e-05!GO:0001558;regulation of cell growth;6.17568914150148e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;7.04188355139946e-05!GO:0043066;negative regulation of apoptosis;7.53539070293379e-05!GO:0006091;generation of precursor metabolites and energy;8.58820561783809e-05!GO:0016859;cis-trans isomerase activity;9.01673458527657e-05!GO:0005905;coated pit;9.40188316423963e-05!GO:0003713;transcription coactivator activity;9.59101787298178e-05!GO:0015980;energy derivation by oxidation of organic compounds;0.000107858156320985!GO:0009892;negative regulation of metabolic process;0.000119774052281369!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000122532898429686!GO:0045454;cell redox homeostasis;0.000125713898110985!GO:0033116;ER-Golgi intermediate compartment membrane;0.000128633587390734!GO:0000151;ubiquitin ligase complex;0.00013778330405356!GO:0016779;nucleotidyltransferase activity;0.000138528378620967!GO:0016126;sterol biosynthetic process;0.000138859326210115!GO:0007010;cytoskeleton organization and biogenesis;0.000140495523439908!GO:0051170;nuclear import;0.000149580880089161!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000149580880089161!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000161408738626562!GO:0000323;lytic vacuole;0.000167035953060752!GO:0005764;lysosome;0.000167035953060752!GO:0019899;enzyme binding;0.000167668920042812!GO:0005770;late endosome;0.00017196481461415!GO:0030133;transport vesicle;0.000174146194434229!GO:0005813;centrosome;0.000177833153597798!GO:0030867;rough endoplasmic reticulum membrane;0.000181323076496049!GO:0030036;actin cytoskeleton organization and biogenesis;0.000193913660804317!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000208977942066697!GO:0006261;DNA-dependent DNA replication;0.000229113333137235!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000271318942755504!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000275128007779237!GO:0006606;protein import into nucleus;0.000281792571632596!GO:0006613;cotranslational protein targeting to membrane;0.000288944438480886!GO:0065009;regulation of a molecular function;0.000289550348625299!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000289710127754215!GO:0046474;glycerophospholipid biosynthetic process;0.000289710127754215!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.000301509926375225!GO:0004298;threonine endopeptidase activity;0.000310575770257117!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000347002437726633!GO:0005815;microtubule organizing center;0.000373742831018871!GO:0051427;hormone receptor binding;0.00037466148361035!GO:0003684;damaged DNA binding;0.000419631265343566!GO:0016787;hydrolase activity;0.000419631265343566!GO:0030118;clathrin coat;0.000419906688902022!GO:0005769;early endosome;0.00043476697455222!GO:0000139;Golgi membrane;0.00044581662248853!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000469262264979107!GO:0051028;mRNA transport;0.000484743867355736!GO:0008250;oligosaccharyl transferase complex;0.000484743867355736!GO:0003724;RNA helicase activity;0.000509326990677695!GO:0042802;identical protein binding;0.000512810092495088!GO:0044262;cellular carbohydrate metabolic process;0.000522837318885815!GO:0051789;response to protein stimulus;0.00054679077227232!GO:0006986;response to unfolded protein;0.00054679077227232!GO:0005791;rough endoplasmic reticulum;0.000589924927320819!GO:0008094;DNA-dependent ATPase activity;0.000597202549798018!GO:0005525;GTP binding;0.000613333181514696!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000674678050103593!GO:0005657;replication fork;0.000718403500776579!GO:0035257;nuclear hormone receptor binding;0.000747599463821672!GO:0000314;organellar small ribosomal subunit;0.00079565093609397!GO:0005763;mitochondrial small ribosomal subunit;0.00079565093609397!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000842789459169031!GO:0007051;spindle organization and biogenesis;0.000845386083087808!GO:0003899;DNA-directed RNA polymerase activity;0.000866779614386995!GO:0004576;oligosaccharyl transferase activity;0.00090347859074947!GO:0043488;regulation of mRNA stability;0.00092638493499212!GO:0043487;regulation of RNA stability;0.00092638493499212!GO:0016481;negative regulation of transcription;0.000932831820331305!GO:0040008;regulation of growth;0.000932831820331305!GO:0030132;clathrin coat of coated pit;0.000932831820331305!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000962053249918833!GO:0007264;small GTPase mediated signal transduction;0.000983283782929076!GO:0043681;protein import into mitochondrion;0.00100182423104127!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00107435340788986!GO:0030029;actin filament-based process;0.00107910098372335!GO:0051252;regulation of RNA metabolic process;0.00110856034175003!GO:0000775;chromosome, pericentric region;0.00115662921410282!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00115662921410282!GO:0001726;ruffle;0.0011682303050102!GO:0048522;positive regulation of cellular process;0.00119102659785466!GO:0030119;AP-type membrane coat adaptor complex;0.0012784142533251!GO:0005048;signal sequence binding;0.00128499308058798!GO:0051920;peroxiredoxin activity;0.00131469053015998!GO:0030027;lamellipodium;0.00139139564397728!GO:0006695;cholesterol biosynthetic process;0.0013932971148147!GO:0043021;ribonucleoprotein binding;0.00142737851285228!GO:0008092;cytoskeletal protein binding;0.00152581432629826!GO:0018196;peptidyl-asparagine modification;0.00155629380863355!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00155629380863355!GO:0006979;response to oxidative stress;0.00158498921870956!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00169886244123261!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00169886244123261!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00169886244123261!GO:0005885;Arp2/3 protein complex;0.00176720862065646!GO:0046489;phosphoinositide biosynthetic process;0.00179585402953018!GO:0019867;outer membrane;0.00179619767406406!GO:0030131;clathrin adaptor complex;0.00185463291145326!GO:0051168;nuclear export;0.0019455934589505!GO:0007243;protein kinase cascade;0.00195760527803553!GO:0007088;regulation of mitosis;0.00196421958731808!GO:0031968;organelle outer membrane;0.00206281816002746!GO:0030663;COPI coated vesicle membrane;0.00212364024121242!GO:0030126;COPI vesicle coat;0.00212364024121242!GO:0006650;glycerophospholipid metabolic process;0.00228217775236074!GO:0009165;nucleotide biosynthetic process;0.00233471175462407!GO:0007006;mitochondrial membrane organization and biogenesis;0.00234482328631104!GO:0006839;mitochondrial transport;0.0023488627517213!GO:0006414;translational elongation;0.00238847698667396!GO:0030176;integral to endoplasmic reticulum membrane;0.00243637242168878!GO:0019222;regulation of metabolic process;0.00252377403380329!GO:0008186;RNA-dependent ATPase activity;0.00287953303737199!GO:0048471;perinuclear region of cytoplasm;0.0029267680896683!GO:0000075;cell cycle checkpoint;0.00307447410958054!GO:0005684;U2-dependent spliceosome;0.0031522410576821!GO:0003682;chromatin binding;0.00315804142646604!GO:0008033;tRNA processing;0.00321460424678813!GO:0006402;mRNA catabolic process;0.00339850922891815!GO:0006612;protein targeting to membrane;0.00357161432256044!GO:0048487;beta-tubulin binding;0.0036469797903245!GO:0030659;cytoplasmic vesicle membrane;0.00375641196572397!GO:0032561;guanyl ribonucleotide binding;0.00400447944040683!GO:0019001;guanyl nucleotide binding;0.00400447944040683!GO:0005741;mitochondrial outer membrane;0.00401766433142797!GO:0005852;eukaryotic translation initiation factor 3 complex;0.004335297531853!GO:0006626;protein targeting to mitochondrion;0.00440901086536599!GO:0006289;nucleotide-excision repair;0.00440901086536599!GO:0017166;vinculin binding;0.00440901086536599!GO:0032508;DNA duplex unwinding;0.0046078309395229!GO:0032392;DNA geometric change;0.0046078309395229!GO:0030658;transport vesicle membrane;0.00466587153215516!GO:0043284;biopolymer biosynthetic process;0.00520929493152!GO:0030137;COPI-coated vesicle;0.00535743491871269!GO:0003729;mRNA binding;0.00549440459579337!GO:0016363;nuclear matrix;0.00575014656842252!GO:0006082;organic acid metabolic process;0.00581609985093686!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00623314044238856!GO:0008610;lipid biosynthetic process;0.00628597748031025!GO:0019752;carboxylic acid metabolic process;0.00657770860143631!GO:0007050;cell cycle arrest;0.00690543826269962!GO:0004004;ATP-dependent RNA helicase activity;0.00709670037999793!GO:0051101;regulation of DNA binding;0.00742635184284294!GO:0006268;DNA unwinding during replication;0.00749025116976635!GO:0004177;aminopeptidase activity;0.00779726666907552!GO:0005874;microtubule;0.00779726666907552!GO:0007040;lysosome organization and biogenesis;0.0078918454860625!GO:0006818;hydrogen transport;0.00801586544447797!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00831685397546178!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00831685397546178!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00839707120835676!GO:0008022;protein C-terminus binding;0.00883095899996382!GO:0050790;regulation of catalytic activity;0.00904069846848617!GO:0030384;phosphoinositide metabolic process;0.00915232761095803!GO:0006509;membrane protein ectodomain proteolysis;0.00939452627847105!GO:0033619;membrane protein proteolysis;0.00939452627847105!GO:0016741;transferase activity, transferring one-carbon groups;0.00945284787667559!GO:0000049;tRNA binding;0.00960131583373052!GO:0008168;methyltransferase activity;0.00967800799004357!GO:0007265;Ras protein signal transduction;0.00967811392582458!GO:0006740;NADPH regeneration;0.00967811392582458!GO:0006098;pentose-phosphate shunt;0.00967811392582458!GO:0003690;double-stranded DNA binding;0.00969433531693717!GO:0000059;protein import into nucleus, docking;0.00971419966010606!GO:0003711;transcription elongation regulator activity;0.0100105815745427!GO:0044433;cytoplasmic vesicle part;0.0101027835459326!GO:0006284;base-excision repair;0.0102170532185128!GO:0030125;clathrin vesicle coat;0.0102779719416896!GO:0030665;clathrin coated vesicle membrane;0.0102779719416896!GO:0030660;Golgi-associated vesicle membrane;0.0105367735536883!GO:0045936;negative regulation of phosphate metabolic process;0.0105807775333394!GO:0030145;manganese ion binding;0.0106547738419716!GO:0015992;proton transport;0.0106865684058363!GO:0008637;apoptotic mitochondrial changes;0.0107134327948065!GO:0040029;regulation of gene expression, epigenetic;0.0107936171933098!GO:0006401;RNA catabolic process;0.0109578013159305!GO:0031543;peptidyl-proline dioxygenase activity;0.0113327958607341!GO:0005637;nuclear inner membrane;0.0114272996759824!GO:0015631;tubulin binding;0.0114501812111199!GO:0007033;vacuole organization and biogenesis;0.0117380151714726!GO:0007346;regulation of progression through mitotic cell cycle;0.0118924813996658!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0124204242505216!GO:0006779;porphyrin biosynthetic process;0.0124345282770308!GO:0033014;tetrapyrrole biosynthetic process;0.0124345282770308!GO:0003678;DNA helicase activity;0.0125146004391857!GO:0000082;G1/S transition of mitotic cell cycle;0.0128363744880765!GO:0006506;GPI anchor biosynthetic process;0.0131002511301728!GO:0016408;C-acyltransferase activity;0.0137994387044173!GO:0030031;cell projection biogenesis;0.0138957048447214!GO:0051098;regulation of binding;0.0141798524452976!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0147294973360151!GO:0005869;dynactin complex;0.0147596827914792!GO:0001836;release of cytochrome c from mitochondria;0.0148014109654185!GO:0006778;porphyrin metabolic process;0.014958666081409!GO:0033013;tetrapyrrole metabolic process;0.014958666081409!GO:0045892;negative regulation of transcription, DNA-dependent;0.0152875267581359!GO:0019798;procollagen-proline dioxygenase activity;0.0154164736287359!GO:0005583;fibrillar collagen;0.015474218748864!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0158010159918598!GO:0015002;heme-copper terminal oxidase activity;0.0158010159918598!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0158010159918598!GO:0004129;cytochrome-c oxidase activity;0.0158010159918598!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0158345981099979!GO:0006383;transcription from RNA polymerase III promoter;0.015841926913951!GO:0030057;desmosome;0.0159062054033953!GO:0016044;membrane organization and biogenesis;0.0162144103481389!GO:0051287;NAD binding;0.0162144103481389!GO:0006066;alcohol metabolic process;0.0168110658347531!GO:0043154;negative regulation of caspase activity;0.0169434502532463!GO:0016125;sterol metabolic process;0.0172484687691586!GO:0006405;RNA export from nucleus;0.0172484687691586!GO:0046467;membrane lipid biosynthetic process;0.0175230537924613!GO:0006520;amino acid metabolic process;0.0175360098176998!GO:0065007;biological regulation;0.0175360098176998!GO:0031902;late endosome membrane;0.0175389981947629!GO:0008629;induction of apoptosis by intracellular signals;0.0177352094289769!GO:0045893;positive regulation of transcription, DNA-dependent;0.0180288520143325!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.018166895936992!GO:0019904;protein domain specific binding;0.0183258833171428!GO:0006595;polyamine metabolic process;0.0188823928366273!GO:0003746;translation elongation factor activity;0.0190195083146363!GO:0006505;GPI anchor metabolic process;0.0197727471237695!GO:0030134;ER to Golgi transport vesicle;0.0200052124627828!GO:0031529;ruffle organization and biogenesis;0.020415943220995!GO:0008286;insulin receptor signaling pathway;0.0204965838638876!GO:0030880;RNA polymerase complex;0.0205071937480603!GO:0031124;mRNA 3'-end processing;0.0209271059652958!GO:0006891;intra-Golgi vesicle-mediated transport;0.0209965236613133!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0212161203231373!GO:0008139;nuclear localization sequence binding;0.0213192609342683!GO:0048518;positive regulation of biological process;0.0213284743789571!GO:0048500;signal recognition particle;0.0215582117574905!GO:0035035;histone acetyltransferase binding;0.0216882645972164!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0223803208238688!GO:0035258;steroid hormone receptor binding;0.0223901510538624!GO:0006338;chromatin remodeling;0.0233999623131245!GO:0004518;nuclease activity;0.0235394273120538!GO:0045941;positive regulation of transcription;0.0239077779395403!GO:0032507;maintenance of cellular protein localization;0.0242603565828756!GO:0004527;exonuclease activity;0.0242871507097024!GO:0012506;vesicle membrane;0.024404229554578!GO:0005832;chaperonin-containing T-complex;0.0247133584157227!GO:0030521;androgen receptor signaling pathway;0.025095000895025!GO:0031072;heat shock protein binding;0.0250984022169662!GO:0044452;nucleolar part;0.02517853949497!GO:0046426;negative regulation of JAK-STAT cascade;0.0257641764806181!GO:0042326;negative regulation of phosphorylation;0.025783147190516!GO:0048468;cell development;0.0259811470588632!GO:0051656;establishment of organelle localization;0.026079932165431!GO:0006354;RNA elongation;0.0262447997332024!GO:0045806;negative regulation of endocytosis;0.0263271594850991!GO:0008632;apoptotic program;0.0264317379500767!GO:0006352;transcription initiation;0.0265891614938038!GO:0006807;nitrogen compound metabolic process;0.0275035978182921!GO:0005520;insulin-like growth factor binding;0.0277654675326454!GO:0051338;regulation of transferase activity;0.0282537867598129!GO:0008180;signalosome;0.0287775733632235!GO:0030127;COPII vesicle coat;0.0293692601740783!GO:0012507;ER to Golgi transport vesicle membrane;0.0293692601740783!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0295378425250459!GO:0006497;protein amino acid lipidation;0.0301473736944431!GO:0043022;ribosome binding;0.030185221695812!GO:0000030;mannosyltransferase activity;0.0301968376602086!GO:0001527;microfibril;0.0303018285259072!GO:0007052;mitotic spindle organization and biogenesis;0.030651055121356!GO:0051235;maintenance of localization;0.0312480552659146!GO:0046483;heterocycle metabolic process;0.0312480552659146!GO:0006739;NADP metabolic process;0.031322182476233!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.031322182476233!GO:0015399;primary active transmembrane transporter activity;0.031322182476233!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0316131291489976!GO:0010257;NADH dehydrogenase complex assembly;0.0316131291489976!GO:0033108;mitochondrial respiratory chain complex assembly;0.0316131291489976!GO:0005774;vacuolar membrane;0.032545340911396!GO:0016584;nucleosome positioning;0.0327527050669792!GO:0000123;histone acetyltransferase complex;0.0327527050669792!GO:0042158;lipoprotein biosynthetic process;0.0328701646821805!GO:0006458;'de novo' protein folding;0.0329501624733755!GO:0051084;'de novo' posttranslational protein folding;0.0329501624733755!GO:0016407;acetyltransferase activity;0.0332837728713159!GO:0016301;kinase activity;0.0339854453051727!GO:0005862;muscle thin filament tropomyosin;0.0342952738731829!GO:0043414;biopolymer methylation;0.0346743650160879!GO:0008312;7S RNA binding;0.0347402996213158!GO:0050811;GABA receptor binding;0.0356696732692236!GO:0031418;L-ascorbic acid binding;0.0357637244983978!GO:0050662;coenzyme binding;0.0359089840178394!GO:0006611;protein export from nucleus;0.0359089840178394!GO:0006376;mRNA splice site selection;0.0360739834927904!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0360739834927904!GO:0022890;inorganic cation transmembrane transporter activity;0.0367925067952128!GO:0006644;phospholipid metabolic process;0.0367925067952128!GO:0051128;regulation of cellular component organization and biogenesis;0.036808671572416!GO:0051087;chaperone binding;0.0371819521993198!GO:0033673;negative regulation of kinase activity;0.0372425552627164!GO:0006469;negative regulation of protein kinase activity;0.0372425552627164!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0373137494394985!GO:0009967;positive regulation of signal transduction;0.0375318231158468!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.037818631140833!GO:0000428;DNA-directed RNA polymerase complex;0.037818631140833!GO:0006767;water-soluble vitamin metabolic process;0.0394449339969442!GO:0000776;kinetochore;0.0398748993015019!GO:0005856;cytoskeleton;0.0398768863823664!GO:0006783;heme biosynthetic process;0.0398768863823664!GO:0030128;clathrin coat of endocytic vesicle;0.0398768863823664!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0398768863823664!GO:0030122;AP-2 adaptor complex;0.0398768863823664!GO:0009308;amine metabolic process;0.040099336575419!GO:0051059;NF-kappaB binding;0.040099336575419!GO:0000086;G2/M transition of mitotic cell cycle;0.0401394475220894!GO:0004860;protein kinase inhibitor activity;0.0403260771503261!GO:0016197;endosome transport;0.0403609734881695!GO:0045737;positive regulation of cyclin-dependent protein kinase activity;0.0406402970072281!GO:0031323;regulation of cellular metabolic process;0.0409424839547116!GO:0051348;negative regulation of transferase activity;0.0410198212301705!GO:0006643;membrane lipid metabolic process;0.0410198212301705!GO:0043065;positive regulation of apoptosis;0.0410844057469986!GO:0016251;general RNA polymerase II transcription factor activity;0.0417493118344377!GO:0000096;sulfur amino acid metabolic process;0.0421860347807287!GO:0043189;H4/H2A histone acetyltransferase complex;0.0422763038412628!GO:0009303;rRNA transcription;0.0422834937645452!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0424634490202261!GO:0000209;protein polyubiquitination;0.0424872579961472!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0427529405558086!GO:0045047;protein targeting to ER;0.0427529405558086!GO:0000118;histone deacetylase complex;0.0427529405558086!GO:0006733;oxidoreduction coenzyme metabolic process;0.0427539555085351!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0433550588495462!GO:0006519;amino acid and derivative metabolic process;0.0435600463805761!GO:0008652;amino acid biosynthetic process;0.0441408475949157!GO:0042168;heme metabolic process;0.044782127940471!GO:0045334;clathrin-coated endocytic vesicle;0.044782127940471!GO:0043549;regulation of kinase activity;0.0448669544443786!GO:0005925;focal adhesion;0.0450122972925035!GO:0000792;heterochromatin;0.0450939927643455!GO:0008538;proteasome activator activity;0.0451757244386229!GO:0005876;spindle microtubule;0.0452450637402723!GO:0043068;positive regulation of programmed cell death;0.0454148651227875!GO:0003756;protein disulfide isomerase activity;0.0461972693217699!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0461972693217699!GO:0051651;maintenance of cellular localization;0.0464031051792271!GO:0005092;GDP-dissociation inhibitor activity;0.0464527096329481!GO:0030911;TPR domain binding;0.0467458189426694!GO:0050178;phenylpyruvate tautomerase activity;0.0467776487033377!GO:0006378;mRNA polyadenylation;0.0469049586668266!GO:0048144;fibroblast proliferation;0.047119360642242!GO:0048145;regulation of fibroblast proliferation;0.047119360642242!GO:0008426;protein kinase C inhibitor activity;0.0471554635496816!GO:0004674;protein serine/threonine kinase activity;0.0477913731174176!GO:0005581;collagen;0.0481540641730869!GO:0006302;double-strand break repair;0.0488746543699608!GO:0046966;thyroid hormone receptor binding;0.0489032648139045!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.048982712420437!GO:0051052;regulation of DNA metabolic process;0.048982712420437!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0494569618701953!GO:0004364;glutathione transferase activity;0.0495197298849167 | |||
|sample_id=11427 | |sample_id=11427 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 104: | ||
|sample_tissue=placenta | |sample_tissue=placenta | ||
|top_motifs=PPARG:1.93393490652;XCPE1{core}:1.90928801082;ZNF148:1.73132820066;HOX{A5,B5}:1.67899270537;GLI1..3:1.65084492649;TP53:1.63293391629;GCM1,2:1.57740160343;ZIC1..3:1.5654309092;PAX5:1.55836314945;TFAP2{A,C}:1.52986420773;ZNF423:1.38690428274;TBP:1.36628093946;ESR1:1.27795907984;ZNF384:1.26871866666;TEAD1:1.26431185486;SP1:1.20136426963;RXR{A,B,G}:1.18074171227;RXRA_VDR{dimer}:1.17339010785;MAZ:1.13857973315;AR:1.04267815344;TFAP4:1.00799025091;NKX2-3_NKX2-5:0.937482935643;NKX2-1,4:0.931530425073;SPZ1:0.926256413136;TBX4,5:0.903670764053;EBF1:0.888286032654;SNAI1..3:0.886026935973;HMX1:0.878434135125;TFCP2:0.873672833819;HAND1,2:0.871209462353;FOXM1:0.869398158157;ZNF238:0.828614932393;UFEwm:0.800095004823;RORA:0.761130308023;GTF2A1,2:0.75474283757;GFI1:0.749158246521;IKZF1:0.724827190699;NFY{A,B,C}:0.71164518132;EP300:0.685314308957;NR3C1:0.671880705541;EN1,2:0.666669803522;ONECUT1,2:0.661140969583;MTF1:0.651414362695;KLF4:0.609614076585;HIC1:0.558519768649;PAX1,9:0.554607914719;E2F1..5:0.511874406012;ZEB1:0.510338703093;SOX17:0.497829537701;YY1:0.491686063558;RREB1:0.479616848557;POU2F1..3:0.452487531044;HES1:0.445193457114;PATZ1:0.392847412097;NKX2-2,8:0.390982567883;PBX1:0.389678607711;FOS_FOS{B,L1}_JUN{B,D}:0.337576420134;GTF2I:0.337421263686;TLX1..3_NFIC{dimer}:0.326117754644;ALX4:0.297386764439;BACH2:0.263930329731;SOX{8,9,10}:0.26069142372;FOXL1:0.245341806504;ZNF143:0.236063893684;ZBTB6:0.223926507603;HLF:0.218791959041;TFAP2B:0.207124994374;HIF1A:0.206909795483;XBP1:0.185268282954;TAL1_TCF{3,4,12}:0.165067364223;GZF1:0.155987925024;TOPORS:0.144177651168;TFDP1:0.136972116228;NR6A1:0.124400473388;PAX8:0.0914828643411;STAT5{A,B}:0.0884358453732;LEF1_TCF7_TCF7L1,2:0.0753071409637;POU3F1..4:0.0686806433835;bHLH_family:0.0663022108157;LHX3,4:0.0619911846921;HOX{A4,D4}:0.0576503062281;NR5A1,2:0.0399493817778;SOX5:0.0135599823365;AIRE:-0.0363454936718;NANOG{mouse}:-0.0759407695371;FOSL2:-0.0880678308746;ELK1,4_GABP{A,B1}:-0.0993442427177;REST:-0.101405680659;ATF6:-0.103065280194;NFE2:-0.129468009418;HNF4A_NR2F1,2:-0.136951521505;HNF1A:-0.153237338697;ESRRA:-0.173775349896;ARID5B:-0.194934417765;MED-1{core}:-0.205608298519;MZF1:-0.247579650418;MYB:-0.250372256846;HOXA9_MEIS1:-0.265659636322;NFIL3:-0.26725791305;HOX{A6,A7,B6,B7}:-0.267267930962;JUN:-0.280821969325;POU6F1:-0.282561033552;CDC5L:-0.292788265817;SMAD1..7,9:-0.294803438294;STAT1,3:-0.295049076666;NFE2L2:-0.295401767505;POU1F1:-0.298457355795;CEBPA,B_DDIT3:-0.308813642257;ATF2:-0.318094371195;SRF:-0.32363779077;NHLH1,2:-0.341434371843;RUNX1..3:-0.346870974533;MYBL2:-0.348340382746;PRRX1,2:-0.352166515767;NFKB1_REL_RELA:-0.353924185606;HSF1,2:-0.361897260828;ADNP_IRX_SIX_ZHX:-0.371244661245;GATA6:-0.381088803694;FOXQ1:-0.394805863252;MYOD1:-0.406622948515;GFI1B:-0.420911485923;EGR1..3:-0.423109801855;T:-0.477050020891;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.500415586836;RFX1:-0.515520921825;ATF4:-0.563926461001;NRF1:-0.581420223655;OCT4_SOX2{dimer}:-0.600895291633;MEF2{A,B,C,D}:-0.603124362825;MTE{core}:-0.619001500246;SOX2:-0.622735826173;FOXO1,3,4:-0.62803681864;PAX4:-0.629948768023;DBP:-0.697902832949;NKX3-2:-0.716484348178;PAX3,7:-0.718407556174;BREu{core}:-0.719836692664;PAX2:-0.720833744509;HMGA1,2:-0.738787642681;SPIB:-0.741429618521;RBPJ:-0.742015059177;ETS1,2:-0.745341421828;NFATC1..3:-0.754032274944;MAFB:-0.755341175907;ELF1,2,4:-0.756668138111;PRDM1:-0.757897913152;BPTF:-0.771558688044;LMO2:-0.775397989612;MYFfamily:-0.778815118372;STAT2,4,6:-0.801246655588;SPI1:-0.808196426341;SREBF1,2:-0.825147164107;CREB1:-0.843942598537;NR1H4:-0.863829345112;PITX1..3:-0.904181083115;CUX2:-0.93470817613;NKX3-1:-0.942773821195;FOX{F1,F2,J1}:-0.97240491952;TLX2:-0.993557507158;EVI1:-1.03279807611;FOXA2:-1.04003447293;NANOG:-1.05967110376;ALX1:-1.07611711488;PAX6:-1.07683521695;GATA4:-1.08533267966;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.15713918001;AHR_ARNT_ARNT2:-1.15891735791;DMAP1_NCOR{1,2}_SMARC:-1.16982835708;ZFP161:-1.17316597497;FOXN1:-1.17838078888;IRF7:-1.2061494288;ATF5_CREB3:-1.20796044623;IRF1,2:-1.21323784361;POU5F1:-1.22022971916;FOX{D1,D2}:-1.23644323069;TEF:-1.23716715898;NFE2L1:-1.27279462876;FOXP3:-1.27372316009;FOX{I1,J2}:-1.27758659401;CRX:-1.28267823459;NFIX:-1.30430129509;FOXD3:-1.31561590032;TGIF1:-1.32322135391;VSX1,2:-1.46404649777;RFX2..5_RFXANK_RFXAP:-1.46574137666;CDX1,2,4:-1.53865327074;FOXP1:-1.55026172149;PDX1:-1.76901561735;IKZF2:-1.99365917592;NKX6-1,2:-2.02902150855;ZBTB16:-2.26864875786;HBP1_HMGB_SSRP1_UBTF:-2.72336102483 | |top_motifs=PPARG:1.93393490652;XCPE1{core}:1.90928801082;ZNF148:1.73132820066;HOX{A5,B5}:1.67899270537;GLI1..3:1.65084492649;TP53:1.63293391629;GCM1,2:1.57740160343;ZIC1..3:1.5654309092;PAX5:1.55836314945;TFAP2{A,C}:1.52986420773;ZNF423:1.38690428274;TBP:1.36628093946;ESR1:1.27795907984;ZNF384:1.26871866666;TEAD1:1.26431185486;SP1:1.20136426963;RXR{A,B,G}:1.18074171227;RXRA_VDR{dimer}:1.17339010785;MAZ:1.13857973315;AR:1.04267815344;TFAP4:1.00799025091;NKX2-3_NKX2-5:0.937482935643;NKX2-1,4:0.931530425073;SPZ1:0.926256413136;TBX4,5:0.903670764053;EBF1:0.888286032654;SNAI1..3:0.886026935973;HMX1:0.878434135125;TFCP2:0.873672833819;HAND1,2:0.871209462353;FOXM1:0.869398158157;ZNF238:0.828614932393;UFEwm:0.800095004823;RORA:0.761130308023;GTF2A1,2:0.75474283757;GFI1:0.749158246521;IKZF1:0.724827190699;NFY{A,B,C}:0.71164518132;EP300:0.685314308957;NR3C1:0.671880705541;EN1,2:0.666669803522;ONECUT1,2:0.661140969583;MTF1:0.651414362695;KLF4:0.609614076585;HIC1:0.558519768649;PAX1,9:0.554607914719;E2F1..5:0.511874406012;ZEB1:0.510338703093;SOX17:0.497829537701;YY1:0.491686063558;RREB1:0.479616848557;POU2F1..3:0.452487531044;HES1:0.445193457114;PATZ1:0.392847412097;NKX2-2,8:0.390982567883;PBX1:0.389678607711;FOS_FOS{B,L1}_JUN{B,D}:0.337576420134;GTF2I:0.337421263686;TLX1..3_NFIC{dimer}:0.326117754644;ALX4:0.297386764439;BACH2:0.263930329731;SOX{8,9,10}:0.26069142372;FOXL1:0.245341806504;ZNF143:0.236063893684;ZBTB6:0.223926507603;HLF:0.218791959041;TFAP2B:0.207124994374;HIF1A:0.206909795483;XBP1:0.185268282954;TAL1_TCF{3,4,12}:0.165067364223;GZF1:0.155987925024;TOPORS:0.144177651168;TFDP1:0.136972116228;NR6A1:0.124400473388;PAX8:0.0914828643411;STAT5{A,B}:0.0884358453732;LEF1_TCF7_TCF7L1,2:0.0753071409637;POU3F1..4:0.0686806433835;bHLH_family:0.0663022108157;LHX3,4:0.0619911846921;HOX{A4,D4}:0.0576503062281;NR5A1,2:0.0399493817778;SOX5:0.0135599823365;AIRE:-0.0363454936718;NANOG{mouse}:-0.0759407695371;FOSL2:-0.0880678308746;ELK1,4_GABP{A,B1}:-0.0993442427177;REST:-0.101405680659;ATF6:-0.103065280194;NFE2:-0.129468009418;HNF4A_NR2F1,2:-0.136951521505;HNF1A:-0.153237338697;ESRRA:-0.173775349896;ARID5B:-0.194934417765;MED-1{core}:-0.205608298519;MZF1:-0.247579650418;MYB:-0.250372256846;HOXA9_MEIS1:-0.265659636322;NFIL3:-0.26725791305;HOX{A6,A7,B6,B7}:-0.267267930962;JUN:-0.280821969325;POU6F1:-0.282561033552;CDC5L:-0.292788265817;SMAD1..7,9:-0.294803438294;STAT1,3:-0.295049076666;NFE2L2:-0.295401767505;POU1F1:-0.298457355795;CEBPA,B_DDIT3:-0.308813642257;ATF2:-0.318094371195;SRF:-0.32363779077;NHLH1,2:-0.341434371843;RUNX1..3:-0.346870974533;MYBL2:-0.348340382746;PRRX1,2:-0.352166515767;NFKB1_REL_RELA:-0.353924185606;HSF1,2:-0.361897260828;ADNP_IRX_SIX_ZHX:-0.371244661245;GATA6:-0.381088803694;FOXQ1:-0.394805863252;MYOD1:-0.406622948515;GFI1B:-0.420911485923;EGR1..3:-0.423109801855;T:-0.477050020891;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.500415586836;RFX1:-0.515520921825;ATF4:-0.563926461001;NRF1:-0.581420223655;OCT4_SOX2{dimer}:-0.600895291633;MEF2{A,B,C,D}:-0.603124362825;MTE{core}:-0.619001500246;SOX2:-0.622735826173;FOXO1,3,4:-0.62803681864;PAX4:-0.629948768023;DBP:-0.697902832949;NKX3-2:-0.716484348178;PAX3,7:-0.718407556174;BREu{core}:-0.719836692664;PAX2:-0.720833744509;HMGA1,2:-0.738787642681;SPIB:-0.741429618521;RBPJ:-0.742015059177;ETS1,2:-0.745341421828;NFATC1..3:-0.754032274944;MAFB:-0.755341175907;ELF1,2,4:-0.756668138111;PRDM1:-0.757897913152;BPTF:-0.771558688044;LMO2:-0.775397989612;MYFfamily:-0.778815118372;STAT2,4,6:-0.801246655588;SPI1:-0.808196426341;SREBF1,2:-0.825147164107;CREB1:-0.843942598537;NR1H4:-0.863829345112;PITX1..3:-0.904181083115;CUX2:-0.93470817613;NKX3-1:-0.942773821195;FOX{F1,F2,J1}:-0.97240491952;TLX2:-0.993557507158;EVI1:-1.03279807611;FOXA2:-1.04003447293;NANOG:-1.05967110376;ALX1:-1.07611711488;PAX6:-1.07683521695;GATA4:-1.08533267966;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.15713918001;AHR_ARNT_ARNT2:-1.15891735791;DMAP1_NCOR{1,2}_SMARC:-1.16982835708;ZFP161:-1.17316597497;FOXN1:-1.17838078888;IRF7:-1.2061494288;ATF5_CREB3:-1.20796044623;IRF1,2:-1.21323784361;POU5F1:-1.22022971916;FOX{D1,D2}:-1.23644323069;TEF:-1.23716715898;NFE2L1:-1.27279462876;FOXP3:-1.27372316009;FOX{I1,J2}:-1.27758659401;CRX:-1.28267823459;NFIX:-1.30430129509;FOXD3:-1.31561590032;TGIF1:-1.32322135391;VSX1,2:-1.46404649777;RFX2..5_RFXANK_RFXAP:-1.46574137666;CDX1,2,4:-1.53865327074;FOXP1:-1.55026172149;PDX1:-1.76901561735;IKZF2:-1.99365917592;NKX6-1,2:-2.02902150855;ZBTB16:-2.26864875786;HBP1_HMGB_SSRP1_UBTF:-2.72336102483 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11427-118G5;search_select_hide=table117:FF:11427-118G5 | |||
}} | }} | ||
Latest revision as of 18:00, 4 June 2020
| Name: | Placental Epithelial Cells, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12037 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
|
| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12037
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12037
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.208 |
| 10 | 10 | 0.3 |
| 100 | 100 | 0.238 |
| 101 | 101 | 0.108 |
| 102 | 102 | 0.509 |
| 103 | 103 | 0.908 |
| 104 | 104 | 0.931 |
| 105 | 105 | 0.531 |
| 106 | 106 | 0.181 |
| 107 | 107 | 0.251 |
| 108 | 108 | 0.396 |
| 109 | 109 | 0.0214 |
| 11 | 11 | 0.605 |
| 110 | 110 | 0.222 |
| 111 | 111 | 0.391 |
| 112 | 112 | 0.689 |
| 113 | 113 | 0.0836 |
| 114 | 114 | 0.585 |
| 115 | 115 | 0.0794 |
| 116 | 116 | 0.182 |
| 117 | 117 | 0.536 |
| 118 | 118 | 0.395 |
| 119 | 119 | 0.939 |
| 12 | 12 | 0.794 |
| 120 | 120 | 0.0871 |
| 121 | 121 | 0.232 |
| 122 | 122 | 0.507 |
| 123 | 123 | 0.00447 |
| 124 | 124 | 0.0755 |
| 125 | 125 | 0.247 |
| 126 | 126 | 0.428 |
| 127 | 127 | 0.979 |
| 128 | 128 | 0.988 |
| 129 | 129 | 0.689 |
| 13 | 13 | 0.27 |
| 130 | 130 | 0.0898 |
| 131 | 131 | 0.0294 |
| 132 | 132 | 0.437 |
| 133 | 133 | 0.377 |
| 134 | 134 | 0.121 |
| 135 | 135 | 0.93 |
| 136 | 136 | 0.0478 |
| 137 | 137 | 0.0185 |
| 138 | 138 | 0.171 |
| 139 | 139 | 0.168 |
| 14 | 14 | 0.808 |
| 140 | 140 | 0.557 |
| 141 | 141 | 0.984 |
| 142 | 142 | 0.259 |
| 143 | 143 | 0.633 |
| 144 | 144 | 0.887 |
| 145 | 145 | 0.836 |
| 146 | 146 | 0.233 |
| 147 | 147 | 0.302 |
| 148 | 148 | 0.0123 |
| 149 | 149 | 0.274 |
| 15 | 15 | 0.314 |
| 150 | 150 | 0.263 |
| 151 | 151 | 0.429 |
| 152 | 152 | 0.0463 |
| 153 | 153 | 0.0442 |
| 154 | 154 | 0.254 |
| 155 | 155 | 0.304 |
| 156 | 156 | 0.285 |
| 157 | 157 | 0.594 |
| 158 | 158 | 0.528 |
| 159 | 159 | 0.723 |
| 16 | 16 | 0.0973 |
| 160 | 160 | 0.0751 |
| 161 | 161 | 0.0936 |
| 162 | 162 | 0.27 |
| 163 | 163 | 0.895 |
| 164 | 164 | 0.368 |
| 165 | 165 | 0.711 |
| 166 | 166 | 0.802 |
| 167 | 167 | 0.12 |
| 168 | 168 | 0.79 |
| 169 | 169 | 0.0891 |
| 17 | 17 | 0.188 |
| 18 | 18 | 0.787 |
| 19 | 19 | 0.288 |
| 2 | 2 | 0.0739 |
| 20 | 20 | 0.847 |
| 21 | 21 | 0.925 |
| 22 | 22 | 0.0736 |
| 23 | 23 | 0.858 |
| 24 | 24 | 0.711 |
| 25 | 25 | 0.559 |
| 26 | 26 | 0.42 |
| 27 | 27 | 0.558 |
| 28 | 28 | 0.474 |
| 29 | 29 | 0.304 |
| 3 | 3 | 0.621 |
| 30 | 30 | 0.063 |
| 31 | 31 | 0.481 |
| 32 | 32 | 5.65071e-9 |
| 33 | 33 | 0.362 |
| 34 | 34 | 0.359 |
| 35 | 35 | 0.16 |
| 36 | 36 | 0.278 |
| 37 | 37 | 0.589 |
| 38 | 38 | 0.898 |
| 39 | 39 | 0.318 |
| 4 | 4 | 0.747 |
| 40 | 40 | 0.00839 |
| 41 | 41 | 0.341 |
| 42 | 42 | 0.357 |
| 43 | 43 | 0.951 |
| 44 | 44 | 0.558 |
| 45 | 45 | 0.183 |
| 46 | 46 | 0.902 |
| 47 | 47 | 0.834 |
| 48 | 48 | 0.548 |
| 49 | 49 | 0.342 |
| 5 | 5 | 0.152 |
| 50 | 50 | 0.491 |
| 51 | 51 | 0.461 |
| 52 | 52 | 0.547 |
| 53 | 53 | 0.284 |
| 54 | 54 | 0.575 |
| 55 | 55 | 0.373 |
| 56 | 56 | 0.527 |
| 57 | 57 | 0.764 |
| 58 | 58 | 0.259 |
| 59 | 59 | 0.0592 |
| 6 | 6 | 0.739 |
| 60 | 60 | 0.994 |
| 61 | 61 | 0.782 |
| 62 | 62 | 0.153 |
| 63 | 63 | 0.991 |
| 64 | 64 | 0.351 |
| 65 | 65 | 0.499 |
| 66 | 66 | 0.531 |
| 67 | 67 | 0.732 |
| 68 | 68 | 0.787 |
| 69 | 69 | 0.0147 |
| 7 | 7 | 0.989 |
| 70 | 70 | 0.518 |
| 71 | 71 | 0.602 |
| 72 | 72 | 0.728 |
| 73 | 73 | 0.028 |
| 74 | 74 | 0.0292 |
| 75 | 75 | 0.604 |
| 76 | 76 | 0.159 |
| 77 | 77 | 0.00495 |
| 78 | 78 | 0.938 |
| 79 | 79 | 0.0113 |
| 8 | 8 | 0.97 |
| 80 | 80 | 0.78 |
| 81 | 81 | 0.19 |
| 82 | 82 | 0.885 |
| 83 | 83 | 0.843 |
| 84 | 84 | 0.287 |
| 85 | 85 | 0.986 |
| 86 | 86 | 0.622 |
| 87 | 87 | 0.159 |
| 88 | 88 | 0.276 |
| 89 | 89 | 0.0996 |
| 9 | 9 | 0.338 |
| 90 | 90 | 0.0166 |
| 91 | 91 | 0.586 |
| 92 | 92 | 0.247 |
| 93 | 93 | 0.764 |
| 94 | 94 | 0.557 |
| 95 | 95 | 0.0961 |
| 96 | 96 | 0.218 |
| 97 | 97 | 0.484 |
| 98 | 98 | 0.823 |
| 99 | 99 | 0.0161 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12037
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000349 (extraembryonic cell)
0000255 (eukaryotic cell)
0002577 (placental epithelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001987 (placenta)
0005156 (reproductive structure)
0004119 (endoderm-derived structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000478 (extraembryonic structure)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0000474 (female reproductive system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000136 (human placental epithelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
